Xanthomonas axonopodis pv. citri str. 306

  1. XAC3824rpoHNP_644130.1RNA polymerase factor sigma-32

rpoH XAC3824
XAC3823
XAC3823
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Codon
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Narcisse
StringString database Remora
Multalin
XAC3825
XAC3825
ID rpoH
AC NP_644130.1
LT XAC3824
SY
OR NC_003919 from 4498013 to 4498888 on strand -
OS Xanthomonas axonopodis pv. citri str. 306
DE RNA polymerase factor sigma-32
IP RNA polymerase sigma factor RpoH, proteobacteria; RNA polymerase sigma-F type; RNA polymerase sigma-70
CL
EC
GO Biological Process: response to heat (GO:0009408)
Biological Process: transcription initiation (GO:0006352)
DNA-dependent (GO:0006355)
Molecular Function: DNA binding (GO:0003677)
Molecular Function: sigma factor activity (GO:0016987)
Molecular Function: transcription factor activity (GO:0003700)
Molecular Function: zinc ion binding (GO:0008270)
PM
AN
SQ 291 aa
 
........10........20........30........40........50
| | | | |
MNQTTSTALVANNLPIPSALGSLDAYIGAVHQIPVLSVDEEQDLARRFRD
ELDLDAARELVHSHLRFVVHVARGYNGYGLPLGDLIQEGNIGLMKAVKRF
DPDMGVRLVSFAVHWIRAEMHEFILKNWRIVKVATTKAQRKLFFNLRKSK
TRLGWLNASEVTAVAKDLNVSEREVMEMESRLSGRDIGFDASSDEDDDHG
PPSPVSYLVANEEDPSQAYERHDSEDNQLQLLREGMAGLDARSRDIVKRR
WLDSDSKVTLQELADEYGVSAERIRQIEANALKKMKALFVA
xansp

NP_644094.1 lcl|rpoD-XAC3788

56

286

S=240 I=30 E=1.18229e-22

RNA polymerase sigma factor RpoD

pubmed

1

291

S=1510 I=98 E=1.9404e-174

Heat shock sigma factor 32 (RNA polymerase sigma-32 factor) ; DNA-binding Stress response Transcription regulation

Pubmed 9535756

 

prodomImg

pubmed

6

291

S=864 I=59 E=3.78155e-96

RNA polymerase sigma factor ; DNA-binding Stress response Transcription regulation

Pubmed 11320135

 

prodomImg

pubmed

16

286

S=857 I=62 E=2.76053e-95

RNA polymerase sigma factor ; DNA-binding Transcription regulation

Pubmed 11430412

 

prodomImg

pubmed

12

286

S=845 I=60 E=7.25993e-94

RNA polymerase sigma-32 factor ; DNA-binding Stress response Transcription regulation

Pubmed 9168128

 

prodomImg

pubmed

21

286

S=842 I=59 E=1.60511e-93

RNA polymerase sigma-32 factor ; DNA-binding Stress response Transcription regulation

Pubmed 7501460

 

prodomImg

pubmed

11

290

S=840 I=56 E=2.8044e-93

RNA polymerase sigma factor ; DNA-binding Stress response Transcription regulation

Pubmed 16362517

 

prodomImg

pubmed

6

289

S=840 I=58 E=3.39738e-93

RNA polymerase sigma factor ; DNA-binding Transcription regulation

Pubmed 10492171

 

prodomImg

pubmed

18

287

S=830 I=60 E=5.43566e-92

RNA polymerase sigma-32 factor ; DNA-binding Stress response Transcription regulation

Pubmed 2841288,6088062

 

prodomImg

pubmed

13

287

S=823 I=59 E=3.83204e-91

RNA polymerase sigma-32 factor ; DNA-binding Stress response Transcription regulation

Pubmed 2664713

 

prodomImg

pubmed

21

286

S=805 I=55 E=4.79903e-89

RNA polymerase sigma-32 factor ; DNA-binding Stress response Transcription regulation

Pubmed 9079916

 

prodomImg

sp

12

286

S=845 I=60 E=4.57554e-94

RNA polymerase sigma-32 factor - Vibrio cholerae

Pubmed 9168128,

 

prodomImg

sp

21

286

S=842 I=59 E=1.01161e-93

RNA polymerase sigma-32 factor - Proteus mirabilis

Pubmed 7501460,

 

prodomImg

sp

21

287

S=838 I=60 E=3.45869e-93

RNA polymerase sigma-32 factor - Haemophilus influenzae

 

prodomImg

sp

18

287

S=830 I=60 E=3.4258e-92

RNA polymerase sigma-32 factor - Escherichia coli (strain K12)

Pubmed 2841288,6088062,6387714,8041620,

 

prodomImg

sp

18

287

S=830 I=60 E=3.4258e-92

RNA polymerase sigma-32 factor - Escherichia coli O6

 

prodomImg

trembl

1

291

S=1532 I=99 E=3.1925e-176

RNA polymerase sigma-32 factor - Xanthomonas oryzae pv. oryzae

 

prodomImg

trembl

1

291

S=1530 I=100 E=5.11213e-176

RNA polymerase sigma-32 factor - Xanthomonas campestris pv. vesicatoria (strain 85-10)

 

prodomImg

trembl

1

291

S=1524 I=99 E=2.77449e-175

RNA polymerase sigma-32 factor - Xanthomonas oryzae pv. oryzae (strain MAFF 311018)

 

prodomImg

Iprscan IPR000943 [PR00046]

239

251

RNA polymerase sigma-70 factor

Iprscan IPR000943 [PR00046]

259

274

RNA polymerase sigma-70 factor

Iprscan IPR000943 [PR00046]

274

285

RNA polymerase sigma-70 factor

Iprscan IPR000943 [PR00046]

84

97

RNA polymerase sigma-70 factor

Iprscan IPR011991 [G3DSA:1.10.10.10]

221

286

Winged helix repressor DNA-binding

Iprscan [G3DSA:1.10.601.10]

25

129

-

Iprscan IPR007627 [PF04542]

60

130

RNA polymerase sigma-70 region 2

Iprscan IPR007630 [PF04545]

235

287

RNA polymerase sigma-70 region 4

Iprscan IPR012759 [TIGR02392]

21

291

RNA polymerase sigma factor RpoH, proteobacteria

Iprscan IPR014284 [TIGR02937]

55

289

RNA polymerase sigma-70

Iprscan IPR000943 [PS00715]

84

97

RNA polymerase sigma-70 factor

Iprscan IPR000943 [PS00716]

259

285

RNA polymerase sigma-70 factor

Iprscan IPR013324 [SSF88659]

197

289

RNA polymerase sigma factor, regions 3 and 4

Iprscan IPR013325 [SSF88946]

16

130

RNA polymerase sigma factor, region 2

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pubmed

Set of Uniprot with relevant PubMed cross-references ncbi-blastp

N/A hits
swiss-prot

Swiss-Prot ncbi-blastp

N/A hits
trembl

TrEMBL ncbi-blastp

N/A hits
xanac

Xanthomonas axonopodis pv. citri str. 306 proteome ncbi-blastp

N/A hits
hamap

HAMAP scan

N/A hits
Interpro Scan

IprScan

N/A hits