Xanthomonas albilineans str. GPE PC73

1	Metabolism	GO:0008152
1.1	Carbon compound utilization
1.1.1	Carbohydrates/Carbon compounds	GO:0016052
1.1.1.1	D-allose catabolism	GO:0019316
1.1.1.2	2,5-ketogluconate metabolism	GO:0019522
1.1.1.3	D-arabinose catabolism	GO:0019571
1.1.1.4	D-galactarate catabolism	GO:0019582
1.1.1.5	D- galacturonate catabolism	GO:0019698
1.1.1.6	D-glucarate catabolism	GO:0042838
1.1.1.7	D-glucuronate catabolism	GO:0042840
1.1.1.8	L-arabinose catabolism	GO:0019572
1.1.1.9	L-idonate catabolism	GO:0046183
1.1.1.10	L-lyxose metabolism	GO:0019324
1.1.1.11	Fucose catabolism	GO:0019317
1.1.1.12	Galactitol catabolism	GO:0019404
1.1.1.13	Galactonate catabolism	GO:0019584
1.1.1.14	Lactose degradation	GO:0005990
1.1.1.15	Mannose catabolism	GO:0019309
1.1.1.16	Rhamnose catabolism	GO:0019301
1.1.1.17	Sorbitol degradation	GO:0006062
1.1.1.18	Trehalose degradation, low osmolarity+	GO:0005993
1.1.1.19	Xylose catabolism	GO:0042843
1.1.1.20	Glycol degradation	GO:0042846
1.1.1.21	Mannitol degradation	GO:0019592
1.1.1.22	Ribose degradation	GO:0019303
1.1.1.23	Galactose degradation	GO:0019388
1.1.1.24	Sorbose degradation	GO:0042848
1.1.1.25	L-ascorbate degradation	GO:0019854
1.1.1.26	2-O-alpha-mannosyl-D-glycerate degradation
1.1.1.27	Trehalose degradation, high osmolarity
1.1.1.28	L-galactonate catabolism
1.1.1.29	Malate utilization
1.1.2	Fatty acids (fatty acid oxidation)	GO:0019395
1.1.2.1	Degradation of short-chain fatty acids	GO:0019626
1.1.2.2	3-phenylpropionate and 3-(3-hydroxyphenyl)propionate degradation	GO:0019380	GO:0019622
1.1.2.3	Propionate degradation	GO:0019543
1.1.2.4	Anaerobic fatty acid oxidation pathway
1.1.2.5	Propionyl-CoA (methylmalonyl pathway)
1.1.2.6	Aerobic fatty acid oxidation pathway
1.1.2.7	Acetoacetate degradation
1.1.3	Amino acids	GO:0009063
1.1.3.1	L-alanine degradation	GO:0006524
1.1.3.2	L-serine degradation	GO:0006565
1.1.3.3	Arginine catabolism	GO:0006527
1.1.3.4	Glutamate degradation	GO:0006538
1.1.3.5	Glycine cleavage	GO:0019464
1.1.3.6	Proline utilization	GO:0006562
1.1.3.7	Threonine catabolism	GO:0006567
1.1.3.8	Tryptophan utilization	GO:0006569
1.1.3.9	L-cysteine catabolism	GO:0019448
1.1.3.10	Lysine cleavage	GO:0006554
1.1.3.11	Histidine degradation	GO:0006548
1.1.3.12	Leucine degradation	GO:0006552
1.1.3.13	Methionine degradation	GO:0009087
1.1.3.14	Valine degradation	GO:0006574
1.1.3.15	Phenylalanine, tyrosine degradation	GO:0006559	GO:0006572
1.1.3.16	Glutamine
1.1.3.17	Taurine
1.1.3.18	Arginine degradation III (agmatinase pathway)
1.1.3.19	Aspartate degradation
1.1.3.20	Isoleucine degradation
1.1.4	Amines	GO:0009310
1.1.4.1	Phenylethylamine degradation	GO:0019607
1.1.4.2	Carnitine degradation	GO:0042413
1.1.4.3	Ornithine degradation	GO:0006593
1.1.5	Others
1.1.5.1	Phenylacetic acid degradation	GO:0010124
1.1.5.2	Ethanol degradation	GO:0006068
1.1.5.3	Eugenol catabolism	GO:0042856
1.1.5.4	Beta-ketoadipate pathway	GO:0042952
1.1.5.5	Mandelate catabolism	GO:0019596
1.1.5.6	(deoxy)ribose phosphate degradation
1.1.5.7	Formaldehyde degradation
1.2	Macromolecule degradation	GO:0009057
1.2.1	RNA	GO:0006401
1.2.2	DNA	GO:0006308
1.2.3	Proteins/peptides/glycopeptides	GO:0006508	GO:0009050
1.2.4	Polysaccharides	GO:0000272
1.2.4.1	Glycogen catabolism	GO:0005980
1.2.4.2	Chitin catabolism	GO:0006032
1.3	Energy metabolism (carbon)	GO:0015980
1.3.1	Glycolysis	GO:0006096
1.3.2	Pentose phosphate shunt, oxidative branch	GO:0009051
1.3.3	Pyruvate dehydrogenase	GO:0006086
1.3.4	Tricarboxylic acid cycle	GO:0006099
1.3.5	Fermentation	GO:0006113
1.3.6	Aerobic respiration	GO:0009060
1.3.7	Anaerobic respiration	GO:0009061
1.3.8	ATP proton motive force interconversion	GO:0015986
1.3.9	Entner-Doudoroff pathway	GO:0009255
1.3.10	Formate oxidation
1.3.11	Acyclic isoprenoid degradation
1.4	Energy production/transport
1.4.1	Electron donor	GO:0009053
1.4.2	Electron acceptor	GO:0009054
1.4.3	Electron carrier	GO:0009055
1.5	Building block biosynthesis
1.5.1	Amino acids	GO:0008652
1.5.1.1	Glutamate	GO:0006537
1.5.1.2	Glutamine	GO:0006542
1.5.1.3	Arginine	GO:0006526
1.5.1.4	Proline	GO:0006561
1.5.1.5	Aspartate	GO:0006532
1.5.1.6	Asparagine	GO:0006529
1.5.1.7	Lysine, diaminopimelate	GO:0009089
1.5.1.8	Threonine	GO:0009088
1.5.1.9	Methionine	GO:0009086
1.5.1.10	Glycine	GO:0006545
1.5.1.11	Serine	GO:0006564
1.5.1.12	Cysteine	GO:0019344
1.5.1.13	Phenylalanine	GO:0009094
1.5.1.14	Tyrosine	GO:0006571
1.5.1.15	Tryptophan	GO:0000162
1.5.1.16	Histidine	GO:0000105
1.5.1.17	Alanine	GO:0006523
1.5.1.18	Isoleucine/valine	GO:0009097	GO:0009099
1.5.1.19	Leucine	GO:0009098
1.5.1.20	Chorismate	GO:0009423
1.5.1.21	Homoserine	GO:0009090
1.5.1.22	Ornithine
1.5.1.23	Selenocysteine
1.5.1.24	Glutamate biosynthesis I
1.5.1.25	Alanine biosynthesis III
1.5.2	Nucleotide	GO:0009165
1.5.2.1	Purine biosynthesis	GO:0006164
1.5.2.2	Pyrimidine biosynthesis	GO:0006221
1.5.2.3	Purine ribonucleotide biosynthesis	GO:0009152
1.5.2.4	Pyrimidine ribonucleotide/ribonucleoside biosynthesis	GO:0009220	GO:0042455
1.5.3	Cofactor, small molecule carrier	GO:0009108	GO:0051191
1.5.3.1Biotin	GO:0009102	GO:0009102
1.5.3.2	Folic acid	GO:0046656
1.5.3.3	Lipoate	GO:0009107
1.5.3.4	Molybdenum (molybdopterin)	GO:0006777
1.5.3.5	Coenzyme A	GO:0015937
1.5.3.6	Pyridoxine (vitamin B6)	GO:0008615
1.5.3.7	Nicotinamide adenine dinucleotide (NAD)	GO:0009435
1.5.3.8	Thiamine (Vitamin B1)	GO:0009228
1.5.3.9	Riboflavin (Vitamin B2), FAD, FMN	GO:0009231	GO:0006747	GO:0009398
1.5.3.10	Glutathione	GO:0006750
1.5.3.11	Menaquinone (MK), ubiquinone (Q)	GO:0009234	GO:0006744
1.5.3.12	Heme, porphyrin	GO:0006783	GO:0006779
1.5.3.13	Cobalamin (Vitamin B12)	GO:0009236
1.5.3.14	Enterochelin (enterobactin)	GO:0009239
1.5.3.15	Chrysobactin	GO:0042858
1.5.3.16	Achromobactin	GO:0042861
1.5.3.19	Isoprenoid biosynthesis	GO:0008299
1.5.3.20	Tetrahydrobiopterin biosynthesis	GO:0006729
1.5.3.21	Pyochelin biosynthesis	GO:0042864
1.5.3.22	Glutathione redox reactions
1.5.3.23	Pantothenate biosynthesis I
1.5.3.24	Folate polyglutamylation
1.5.4	Fatty acid and phosphatidic acid	GO:0006633	GO:0006654
1.5.4.1	Fatty acid  elongation - unsaturated
1.5.4.2	Fatty acid  elongation - saturated
1.5.4.3	Fatty acid biosynthesis -- initial steps
1.6	Macromolecules (cellular constituent)  biosynthesis	GO:0009059
1.6.1	Phospholipid	GO:0008654
1.6.1.1	Cyclopropane fatty acid (CFA) biosynthesis
1.6.1.2	Phospholipid biosynthesis I
1.6.2	Colanic acid (M antigen)	GO:0009242
1.6.3	Lipopolysaccharide	GO:0009103
1.6.3.1	antigen	GO:0009243
1.6.3.2	Core region	GO:0009244
1.6.3.3	Lipid A	GO:0009245
1.6.4	Enterobacterial common antigen  (surface glycolipid)	GO:0009246
1.6.5	K antigen	GO:0009248
1.6.6	Osmoregulated periplasmic glucan	GO:0009250
1.6.7	Peptidoglycan (murein)	GO:0009252
1.6.9	Polysaccharides, cytoplasmic	GO:0000271
1.6.10	Lipoprotein	GO:0042158
1.6.11	Glycoprotein	GO:0009101
1.6.12	Flagella	GO:0009296
1.6.13	Fimbria, pili, curli	GO:0009297
1.6.15	Large molecule carriers	GO:0006412
1.6.15.1	Cytochromes	GO:0017004
1.6.15.2	Thioredoxin, glutaredoxin	GO:0042964	GO:0042965
1.6.15.3	Biotin carboxyl carrier protein	GO:0042966
1.6.15.4	Acyl carrier protein	GO:0042967
1.6.16	Cellulose biosynthesis	GO:0030244
1.6.17	GDP-mannose metabolism
1.6.18	Siderophore
1.7	Central intermediary metabolism
1.7.1	Unassigned reversible reactions
1.7.2	Glyoxylate bypass	GO:0006097
1.7.3	Pentose phosphate shunt, non-oxidative branch	GO:0009052
1.7.6	Glycerol metabolism	GO:0006071
1.7.6.1	Glycerol degradation I
1.7.6.2	Glycerol degradation II
1.7.7	Galactose metabolism	GO:0006012
1.7.8	Gluconeogenesis	GO:0006094
1.7.9	Misc. glucose metabolism	GO:0006006
1.7.10	Sugar nucleotide biosynthesis, conversions	GO:0009226
1.7.12	Amino sugar conversions	GO:0046349
1.7.13	Amino acid conversion	GO:0006520
1.7.14	Polyamine biosynthesis	GO:0006596
1.7.14.1	Putrescine biosynthesis I
1.7.14.2	Putrescine biosynthesis III
1.7.14.3	Spermidine biosynthesis
1.7.15	2'-deoxyribonucleotide/ribonucleoside metabolism	GO:0009265
1.7.17	Formyl-tetrahydrofolate biosynthesis	GO:0009257
1.7.18	Betaine biosynthesis	GO:0006578
1.7.19	Incorporation of metal ions
1.7.20	S-adenosyl methionine biosynthesis	GO:0006556
1.7.21	Glyoxylate degradation	GO:0009436
1.7.22	Carnitine metabolism	GO:0042413
1.7.23	Methylglyoxal metabolism	GO:0009438
1.7.24	Cyanate catabolism	GO:0009440
1.7.25	Glycolate metabolism	GO:0009441
1.7.26	Allantoin assimilation	GO:0009442
1.7.27	Pyridoxal 5'-phosphate salvage	GO:0009443
1.7.28	Pyruvate catabolism	GO:0042867
1.7.29	Acetate catabolism	GO:0045733
1.7.31	Aminobutyrate catabolism	GO:0009450
1.7.32	Putrescine catabolism	GO:0009447
1.7.32.1	Putrescine degradation I
1.7.32.2	Putrescine degradation II
1.7.33	Nucleotide and nucleoside conversions	GO:0015949
1.7.33.1	Salvage pathways of adenine, hypoxanthine, and their nucleosides
1.7.33.2	Salvage pathways of guanine, xanthine, and their nucleosides
1.7.33.3	Salvage pathways of pyrimidine deoxyribonucleotides
1.7.33.4	Salvage pathways of pyrimidine ribonucleotides
1.7.34	Peptidoglycan (murein) turnover, recycling	GO:0000270
1.7.35	Lactate oxidation	GO:0019516
1.7.36	Trehalose biosynthesis	GO:0005992
1.7.37	C1 assimilation, serine pathway	GO:0019496
1.7.38	Methionine salvage pathway	GO:0019509
1.7.39	Conversion of succinate to propionate
1.7.40	Fructoselysine and psicoselysine degradation
1.7.41	PRPP biosynthesis I
1.7.42	PRPP biosynthesis II
1.7.43	ppGpp biosynthesis
1.7.44	NAD phosphorylation and dephosphorylation
1.7.45	Pyridine nucleotide cycling
1.7.46	Pyridine nucleotide synthesis
1.8	Metabolism of other compounds
1.8.1	Phosphorous metabolism	GO:0006793
1.8.2	Sulfur metabolism	GO:0006790
1.8.2.1	Sulfate assimilation
1.8.3	Nitrogen metabolism	GO:0006807
2	Information transfer
2.1	DNA related	GO:0006259
2.1.1	DNA replication	GO:0006261
2.1.2	DNA restriction/modification	GO:0006304	GO:0009307
2.1.3	DNA recombination	GO:0006310
2.1.4	DNA repair	GO:0006281
2.1.5	DNA degradation	GO:0006308
2.2	RNA related	GO:0016070
2.2.2	Transcription related	GO:0006350
2.2.3	RNA modification	GO:0009451
2.2.4	RNA degradation	GO:0006401
2.2.5	tRNA	GO:0006399
2.2.6	rRNA, stable RNA	GO:0016072
2.2.7	Antisense RNA	GO:0042868
2.3	Protein related	GO:0006412
2.3.1	Amino acid-activation	GO:0006418
2.3.2	Translation	GO:0006412
2.3.3	Posttranslational modification	GO:0006464
2.3.4	Chaperoning, folding	GO:0006457
2.3.5	Export, signal peptide cleavage	GO:0006605	GO:0006886	GO:0016485
2.3.6	Turnover, degradation	GO:0006508
2.3.7	Nucleoproteins, basic proteins
2.3.8	Ribosomal proteins	GO:0003735
2.3.9	Non-ribosomal peptide synthetase	GO:0019184
3	Regulation	GO:0050789
3.1	Type of regulation 
3.1.1	DNA structure level
3.1.1.1	DNA bending, supercoiling, inversion	GO:0008301	GO:0003916
3.1.1.2	Methylation	GO:0006306
3.1.2	Transcriptional level	GO:0006355
3.1.2.1	Sigma factors, anti-sigmafactors	GO:0016987	GO:0016989
3.1.2.2	Activator	GO:0016563
3.1.2.3	Repressor	GO:0016564
3.1.2.4	Complex regulation
3.1.2.4.1	More than one signal needed 
3.1.2.4.2	Regulons or multilayer component regulatory systems 
3.1.2.4.3	Two-component regulatory systems (external signal)	GO:0000155	GO:0000156
3.1.2.4.4	Quorum sensing	GO:0009370	GO:0009369	GO:0009372
3.1.2.5	Action unknown
3.1.3	Posttranscriptional
3.1.3.1	Translation attenuation and efficiency	GO:0009386
3.1.3.2	Covalent modification, demodification, maturation	GO:0006464	GO:0016485
3.1.3.3	Inhibition / activation of enzymes	GO:0004857	GO:0008047
3.1.3.4	Proteases, cleavage of compounds	GO:0008233
3.1.3.5	Multilayer regulatory systems
3.1.3.6	Antisense RNA	GO:0016246
3.1.3.7	binding, sequestering
3.1.4	Regulation level unknown
3.3	Genetic unit regulated
3.3.1	Operon (regulation of one operon)
3.3.2	Regulon (a network of operons encoding related functions)
3.3.3	Stimulon (ie. environmental stimulus)
3.3.4	Global 
3.4	Trigger (some information added)
3.5	Trigger modulation (some information added)
4	 Transport	GO:0005215	GO:0006810
4.1	Channel-type Transporters	GO:0015267
4.1.A	alpha-type channels
4.1.A.1	The Voltage-gated Ion Channel (VIC) Superfamily	GO:0005244
4.1.A.8	The Major Intrinsic Protein (MIP) Family
4.1.A.11	The Chloride Channel (ClC) Family
4.1.B.17	The Outer Membrane Factor (OMF) Family
4.1.A.22	The Large Conductance Mechanosensitive Ion Channel (MscL) Family
4.1.A.23	The Small Conductance Mechanosensitive Ion Channel (MscS) Family
4.1.A.46	 The H+- or Na+-translocating Bacterial Flagellar Motor (Mot) Family
4.1.B	Beta barrel porins (The Outer Membrane Porin (OMP) Functional Superfamily)
4.1.B.1	The General Bacterial Porin (GBP) Family
4.1.B.3	The Sugar Porin (SP) Family
4.1.B.9	The FadL Outer Membrane Protein (FadL) Family
4.1.B.10	The Nucleoside-specific Channel-forming Outer Membrane Porin (Tsx) Family
4.1.B.14	The Outer Membrane Receptor (OMR) Family
4.1.B.21	The OmpG Porin (OmpG) Family
4.2	 Electrochemical potential driven transporters	GO:0015290
4.2.A	Porters (Uni-, Sym- and Antiporters)	GO:0015293	GO:0015297	GO:0015292
4.2.A.1	The Major Facilitator Superfamily (MFS)
4.2.A.2	The Glycoside-Pentoside-Hexuronide (GPH):Cation Symporter Family
4.2.A.3	The Amino Acid-Polyamine-Choline (APC) Family
4.2.A.4	The Cation Diffusion Facilitator (CDF) Family
4.2.A.6	The Resistance-Nodulation-Cell Division (RND) Superfamily
4.2.A.7	The Drug/Metabolite Transporter (DMT) Superfamily
4.2.A.8	The Gluconate:H+ Symporter (GntP) Family
4.2.A.9	The Cytochrome oxidase biogenesis (Oxa1) Family
4.2.A.10	The 2-Keto-3-Deoxygluconate Transporter (KDGT) Family
4.2.A.13	The C4-Dicarboxylate Uptake (Dcu) Family
4.2.A.14	The Lactate Permease (LctP) Family
4.2.A.15	The Betaine/Carnitine/Choline Transporter (BCCT) Family
4.2.A.16	The Telurite-resistance/Dicarboxylate Transporter (TDT) Family
4.2.A.17	The Proton-dependent Oligopeptide Transporter (POT) Family
4.2.A.19	The Ca2+:Cation Antiporter (CaCA) Family
4.2.A.20	The Inorganic Phosphate Transporter (PiT) Family
4.2.A.21	The Solute:Sodium Symporter (SSS) Family
4.2.A.23	The Dicarboxylate/Amino Acid:Cation (Na+ or H+) Symporter (DAACS) Family
4.2.A.25	The Alanine/Glycine:Cation symporter (AGCS) Family
4.2.A.26	The Branched Chain Amino Acid:Cation Symporter (LIVCS) Family
4.2.A.27	The Glutamate:Na+ Symporter (GltS) Family
4.2.A.33	The NhaA Na+:H+ Antiporter (NhaA) Family
4.2.A.34	The NhaB Na+:H+ Antiporter (NhaB) Family
4.2.A.36	The Monovalent Cation:Proton Antiporter-1 (CPA1) Family
4.2.A.37	The Monovalent Cation:Proton Antiporter-2 (CPA2) Family
4.2.A.38	The K+ Transporter (Trk) Family
4.2.A.39	The Nucleobase:Cation Symporter-1 (NCS1) Family
4.2.A.40	The Nucleobase:Cation Symporter-2 (NCS2) Family
4.2.A.41	The Concentrative Nucleoside Transporter (CNT) Family
4.2.A.42	The Hydroxy/Aromatic Amino Acid Permease (HAAAP) Family
4.2.A.44	The Formate-Nitrite Transporter (FNT) Family
4.2.A.45	The Metal Ion Transporter (MIT) Family
4.2.A.47	The Divalent Anion:Na+ Symporter (DASS) Family
4.2.A.49	The Ammonium Transporter (Amt) Family
4.2.A.53	The Sulfate Permease (SulP) Family
4.2.A.55	The Manganese (Nramp) Fam.
4.2.A.58	The Phosphate:Na+ Symporter (PNaS) Family
4.2.A.61	The C4-dicarboxylate Uptake C (DcuC) Family
4.2.A.64	The Type V Secretory Pathway or Twin Arginine Targeting (Tat) Family
4.2.A.66	The Multi Antimicrobial Extrusion (MATE) Family
4.2.A.68	The p-Aminobenzoyl-glutamate Transporter (AbgT) Family
4.2.A.69	The Auxin Efflux Carrier (AEC) Family
4.2.A.72	The K+ uptake permease (KUP) family 
4.2.A.75	The L-lysine exporter (LysE) family
4.2.A.76	The Resistance to Homoserine/Threonine (RhtB) Family
4.2.C	Ion-gradient driven energizers	GO:0015404
4.2.C.1	TonB Family of Auxiliary Proteins for Energization of OMR-mediated Transport
4.3	Primary Active Transporters	GO:0015291
4.3.A	Pyrophosphate Bond (ATP; GTP; P2) Hydrolysis-driven Active Transporters	GO:0016887
4.3.A.1	The ATP-binding Cassette (ABC) Superfamily + ABC-type Uptake Permeases	GO:0042626
4.3.A.1.a	ATP binding component
4.3.A.1.m	membrane component
4.3.A.1.p	periplasmic binding component
4.3.A.1.am	ATP binding and membrane component
4.3.A.2	The H+/Na+-translocating F-, V- and A-type ATPase (F-ATPase) Superfamily	GO:0045256	GO:0016471
4.3.A.3	The P-type ATPase (P-ATPase) Superfamily	GO:0015662
4.3.A.4	The Arsenite-Antimonite (Ars) Efflux Family	GO:0015446	GO:0042961	GO:0015699	GO:0015700
4.3.A.5	The Type II (General) Secretory Pathway (IISP) Family	GO:0015628	GO:0015447
4.3.A.6	The Type III (Virulence-related) Secretory Pathway (IIISP) Family	GO:0030254	GO:0015448
4.3.A.7	The Type IV (Conjugal DNA-Protein Transfer) Secretory Pathway (IVSP) Family	GO:0030255	GO:0015449
4.3.D	Oxidoreduction-driven Active Transporters	GO:0015453
4.3.D.1	The Proton- or sodium ion-translocating NADH Dehydrogenase (NDH) Family
4.3.D.4	The Proton-translocating Cytochrome Oxidase (COX) Superfamily
4.4	Group Translocators	GO:0015455
4.4.A	Phosphotransferase Systems (PEP-dependent PTS)	GO:0009401
4.4.A.1	The PTS Glucose-Glucoside (Glc) Family
4.4.A.2	The PTS Fructose-Mannitol (Fru) Family
4.4.A.3	The PTS Lactose-N,N'-Diacetylchitobiose-betaucoside (Lac) Family
4.4.A.4	The PTS Glucitol (Gut) Family
4.4.A.5	The PTS Galactitol (Gat) Family
4.4.A.6	The PTS Mannose-Fructose-Sorbose (Man) Family
4.8.A	Accessory Factors Involved in Transport
4.8.A.1	The Membrane Fusion Protein (MFP) Family
4.8.A.2	The Secretin Auxiliary Lipoprotein (SAL) Family
4.8.A.3	MPA1 Family auxillary transport protein
4.8.A.7	The Phosphotransferase System Enzyme I (EI) Family
4.8.A.8	The Phosphotransferase System HPr (HPr) Family
4.9.A	Transporters of Unknown Classification	GO:0005215	GO:0006810GO:0005215	GO:0006810
4.9.A	Recognized transporters of unknown biochemical mechanism	GO:0005215	GO:0006810GO:0005215	GO:0006810
4.9.A.1	The Polysaccharide Transporter (PST) Family	GO:0015159	GO:0015774
4.9.A.4	The Nicotinamide Mononucleotide (NMN) Uptake Permease (PnuC) Family	GO:0015663	GO:0015890
4.9.A.8	The Ferrous Iron Uptake (FeoB) Family	GO:0015093	GO:0015684
4.9.A.13	The Short Chain Fatty Acid Transporter (scFAT) Family	GO:0015635	GO:0015912
4.9.A.16	The Septal DNA Translocator (SDT) Family
4.9.A.17	The Metal Ion Transporter (MIT) Family	GO:0046873	GO:0030001
4.9.B	Putative uncharacterized transport protein	GO:0005215	GO:0006810
4.9.B.3	The Putative Bacterial Murein Precursor Exporter (MPE) Family
4.9.B.4	 The Putative Efflux Transporter (PET) Family
4.9.B.6	The Toxic Hok/Gef Protein (Hok/Gef) Family
4.9.B.10	The 6TMS Putative MarC Transporter (MarC) Family
4.9.B.18	The SecDF-associated Single Transmembrane Protein (SSTP) Family
4.9.B.21	The Frataxin (Frataxin) Family
4.9.B.22	The Putative Permease (PerM) Family
4.9.B.24	The Testis-Enhanced Gene Transfer (TEGT) Family
4.9.B.25	The YbbM (YbbM) Family
4.9.B.27	The YdjX-Z (YdjX-Z) Family
4.9.B.28	The YqaE (YqaE) Family
4.9.B.29	The YebN (YebN) Family
4.9.B.31	The YqiH (YqiH) Family
4.9.B.32	The Putative Vectorial Glycosyl Polymerization (VGP) Family
4.S	substrate	GO:0005215	GO:0006810
4.S.1	(D)-galactarate	GO:0042871	GO:0042877	GO:0042878
4.S.2	2-keto-3-deoxy-D-gluconate	GO:0046411	GO:0015649
4.S.3	3-hydroxyphenylpropionic acid	GO:0042920	GO:0042926
4.S.4	3-phenylpropionic acid	GO:0042889
4.S.5	alkanesulfonate	GO:0042918	GO:0042959
4.S.6	alkanesulphonate
4.S.8	alkylphosphonate	GO:0042916	GO:0042917
4.S.9	allantoin	GO:0015720	GO:0015206
4.S.10	allose/ribose	GO:0015754	GO:0015752	GO:0015593	GO:0015591
4.S.11	alpha-ketoglutarate	GO:0015742	GO:0015139
4.S.12	amino acid	GO:0015171	GO:0006865
4.S.13	amino acid/amide	GO:0042886
4.S.14	ammonium	GO:0015696	GO:0008519
4.S.15	antibiotic	GO:0042891	GO:0042895
4.S.16	arabinose polymer	GO:0042899	GO:0042900
4.S.17	arginine	GO:0015809	GO:0015181
4.S.18	arginine/ornithine	GO:0015822	GO:0015809
4.S.19	arsenite	GO:0015700	GO:0015105
4.S.20	benzoate	GO:0042919	GO:0042925
4.S.21	lactose/glucose	GO:0005355	GO:0015155
4.S.22	beta-glucoside	GO:0015759	GO:0015573
4.S.25	Ca+/ H+	GO:0006816	GO:0015369
4.S.26	cadaverine/lysine	GO:0015819	GO:0015839	GO:0015497
4.S.27	carnitine	GO:0015879	GO:0015226
4.S.28	cation	GO:0006812	GO:0008324
4.S.29	cellobiose/arbutin/salicin	GO:0042948	GO:0042950	GO:0019533	GO:0019191	GO:0042950	GO:0042950
4.S.31	chloramphenicol	GO:0042892
4.S.32	chloride	GO:0006821	GO:0015108
4.S.33	choline	GO:0015871	GO:0015220
4.S.34	citrate/succinate	GO:0015744	GO:0015746	GO:0015515
4.S.35	colicin	GO:0042914	GO:0042912
4.S.36	Cu+	GO:0006825	GO:0005375
4.S.37	curli subunit
4.S.38	cyanate	GO:0015704	GO:0015110
4.S.39	cysteine	GO:0042883
4.S.40	cysteine/O-acetyl-L-serine/cysteine metabolites
4.S.41	cytosine	GO:0015856	GO:0015209
4.S.42	D-alanine/D-serine/glycine	GO:0042942	GO:0042941	GO:0042944	GO:0042945
4.S.43	D-galactonate	GO:0042875	GO:0042880
4.S.44	D-glucarate	GO:0042871	GO:0042878
4.S.45	D-glucose/trehalose	GO:0015771	GO:0015758	GO:0015574	GO:0005355
4.S.46	dicarboxylate	GO:0006835	GO:0005310
4.S.47	dipeptide	GO:0042938	GO:0042936
4.S.48	D-ribose	GO:0015752	GO:0015591
4.S.49	drug	GO:0015893	GO:0015238
4.S.50	D-xylose	GO:0015753	GO:0015148
4.S.51	enterochelin	GO:0042930	GO:0042931
4.S.52	fatty acid	GO:0015908	GO:0015245
4.S.53	Fe	GO:0006826	GO:0005381
4.S.54	Fe++	GO:0015682	GO:0015091
4.S.56	ferric enterobactin	GO:0015685	GO:0015620
4.S.57	ferric hydroxamate	GO:0015687	GO:0015622
4.S.58	ferrichrome	GO:0042928	GO:0042929
4.S.59	formate	GO:0015724	GO:0015499
4.S.60	formate/oxalate	GO:0015724	GO:0019532	GO:0015499	GO:0019531
4.S.61	fosfidomycin/H+	GO:0042894	GO:0042898
4.S.63	fructose	GO:0015755	GO:0005353
4.S.64	fucose	GO:0015756	GO:0015150
4.S.65	galactitol	GO:0015796	GO:0015577
4.S.66	galactose/H+	GO:0015757	GO:0015517
4.S.67	gamma-aminobutyrate	GO:0015812	GO:0015185
4.S.68	glucitol/sorbitol	GO:0015795	GO:0015576
4.S.69	gluconate	GO:0015725	GO:0015128
4.S.70	gluconate/L-idonate	GO:0015725	GO:0015726	GO:0015128	GO:0015568
4.S.71	glucose	GO:0015758	GO:0005355
4.S.72	glucose/maltose	GO:0015758	GO:0015768	GO:0005363	GO:0005355
4.S.73	glucuronide	GO:0015779	GO:0015164
4.S.74	glutamate/aminobutyric acid	GO:0015812	GO:0015813	GO:0015185	GO:0005313
4.S.75	glutamate/aspartate	GO:0015813	GO:0015810	GO:0005313	GO:0015183
4.S.76	glutamine	GO:0006868	GO:0015186
4.S.77	glycerol	GO:0015793	GO:0015168
4.S.78	glycerol-3-P	GO:0015793	GO:0015169
4.S.79	glycine betaine/choline	GO:0015838	GO:0015871
4.S.80	glycine betaine/proline	GO:0015193	GO:0015187	GO:0015199	GO:0015418
4.S.81	group A colicin	GO:0042915	GO:0042913
4.S.82	H+	GO:0015992	GO:0015078
4.S.83	H+/acridine	GO:0042909	GO:0042962
4.S.84	H+/lactose/glucose	GO:0015767	GO:0015758	GO:0015517	GO:0015528
4.S.85	heme	GO:0015886	GO:0015232
4.S.86	hexose phosphate	GO:0015712	GO:0015119
4.S.87	hexuronate	GO:0015736	GO:0015134
4.S.88	histidine	GO:0015817	GO:0005290
4.S.89	histidine/lysine/arginine/ornithine	GO:0015817	GO:0015819	GO:0015809	GO:0015822	GO:0015181	GO:0005290	GO:0015189	GO:0000064
4.S.90	homoserine/lactone	GO:0042968	GO:0042970	GO:0042969	GO:0042971
4.S.91	hydrophilic molecule
4.S.92	hydrophilic molecules
4.S.93	ion	GO:0006811	GO:0015075
4.S.95	iron dicitrate	GO:0015688	GO:0015623
4.S.96	K+	GO:0006813	GO:0015079
4.S.97	K+/H+	GO:0015386
4.S.98	lactate	GO:0015727	GO:0015129
4.S.99	lactose	GO:0015767	GO:0015155
4.S.100	L-arabinose	GO:0042882	GO:0015147
4.S.101	L-arabinose /H+	GO:0015518
4.S.102	L-arabinose/ isopropyl-beta-D-thiogalactopyranoside	GO:0015147
4.S.103	L-asparagine	GO:0006867	GO:0015182
4.S.104	lipooligosaccharides	GO:0015920	GO:0015221
4.S.105	lipopolysaccharide	GO:0015920	GO:0015221
4.S.106	lipoprotein	GO:0042953	GO:0042954
4.S.107	L-lactate	GO:0015727	GO:0015129
4.S.108	L-leucine/L-valine/L-iso-leucine	GO:0015818	GO:0015820	GO:0015829	GO:0015188	GO:0005304	GO:0015190
4.S.109	L-rhamnose/H+	GO:0015762	GO:0015153
4.S.110	L-threonine/L-serine	GO:0015826	GO:0015825	GO:0015195	GO:0015194
4.S.111	lysine	GO:0015819	GO:0015189
4.S.112	lysine/arginine/ornithine	GO:0015819	GO:0015189	GO:0015809	GO:0015181	GO:0000064	GO:0015822
4.S.113	maltose	GO:0005363	GO:0015768
4.S.114	maltose/maltodextrin	GO:0042956	GO:0042958	GO:0005363	GO:0015768
4.S.115	mannitol	GO:0015797	GO:0015575
4.S.116	mannose	GO:0015761	GO:0015578
4.S.117	melibiose	GO:0015156	GO:0015769
4.S.118	methionine	GO:0015821	GO:0015191
4.S.119	methylgalactoside/galactose	GO:0005354	GO:0005354	GO:0015592	GO:0015765
4.S.120	Mg++	GO:0015693	GO:0015095
4.S.121	Mg2+/Ni2+/Co2+	GO:0015675	GO:0006824	GO:0015693	GO:0015099	GO:0015087	GO:0015095
4.S.122	microcin B17	GO:0015638	GO:0042885
4.S.123	Mn+/H+	GO:0005384	GO:0006828
4.S.124	molybdate	GO:0015689	GO:0015098
4.S.125	molybdenum	GO:0042888
4.S.126	multidrug	GO:0015239	GO:0006855
4.S.127	multidrug/bicyclomycin	GO:0015905	GO:0015545
4.S.128	muropeptide	GO:0015640	GO:0015834
4.S.129	myo-inositol	GO:0015798	GO:0005365
4.S.130	Na+	GO:0015081	GO:0006814
4.S.131	Na+/ alanine/glycine	GO:0015808	GO:0015816	GO:0015180	GO:0015187
4.S.132	Na+/ H+	GO:0015385
4.S.133	Na+/Ca+	GO:0005432
4.S.134	Na+/dicarboxylate	GO:0017153
4.S.135	Na+/glutamate/aspartate	GO:0015813	GO:0015810	GO:0015183	GO:0005313
4.S.136	Na+/H+	GO:0015385
4.S.137	Na+/leucine/valine/iso-leucine	GO:0015818	GO:0015820	GO:0015829	GO:0015188	GO:0015190
4.S.138	Na+/pantothenate	GO:0015887	GO:0015498
4.S.139	Na+/proline	GO:0005298
4.S.140	Na+/serine/threonine	GO:0015826	GO:0015825	GO:0015195	GO:0015194
4.S.141	N-acetylgalactosamine	GO:0015763	GO:0015571
4.S.142	N-acetylglucosamine	GO:0015764	GO:0015572
4.S.143	Ni++	GO:0015675	GO:0015099
4.S.144	nicotinamide mononucleotide	GO:0015890	GO:0015663
4.S.145	nitrite	GO:0015707	GO:0015113
4.S.146	nucleoside	GO:0015858	GO:0005337	GO:0015858
4.S.147	nucleoside/H+	GO:0015858	GO:0005337	GO:0015858
4.S.148	oligopeptide	GO:0006857	GO:0015198
4.S.150	p-aminobenzoyl-glutamate	GO:0015814	GO:0015569
4.S.151	Pb/Cd/Zn/Hg	GO:0015692	GO:0015094	GO:0006829	GO:0005385	GO:0015691	GO:0015086	GO:0006829	GO:0005385	GO:0015694	GO:0015097
4.S.152	peptide	GO:0015833	GO:0015197
4.S.153	phenylalanine	GO:0015823	GO:0015192
4.S.154	phenylalanine/ tyrosine	GO:0015801	GO:0015173
4.S.155	phosphate	GO:0006817	GO:0015114
4.S.156	polymyxin	GO:0042893	GO:0042897
4.S.158	proline	GO:0015824	GO:0015193
4.S.159	proline/betaine	GO:0015838	GO:0015824	GO:0015187	GO:0015199
4.S.160	protein	GO:0015031	GO:0008565
4.S.161	protein/DNA	GO:0015869	GO:0015219
4.S.162	purine/xanthine	GO:0006863	GO:0005345
4.S.163	putrescine	GO:0015847
4.S.164	putrescine/ornithine	GO:0015496
4.S.166	putrescine/spermidine	GO:0015847	GO:0015848	GO:0015606	GO:0015489
4.S.167	serine	GO:0015825	GO:0015194
4.S.168	shikimate/dehydroshikimate	GO:0015530	GO:0015733
4.S.169	sialic acid	GO:0015739	GO:0015136
4.S.170	S-methylmethionine	GO:0015806	GO:0000100
4.S.172	sucrose	GO:0008515	GO:0015770
4.S.173	sugar	GO:0008643	GO:0015144
4.S.174	sulfate	GO:0008272	GO:0015116
4.S.175	taurine	GO:0015734	GO:0005368
4.S.176	tellurite	GO:0015710	GO:0015118
4.S.177	thiamine	GO:0015888	GO:0015234
4.S.178	thiosulfate	GO:0015709	GO:0008272	GO:0015117
4.S.179	thiosulfate/sulfate	GO:0015419
4.S.180	threonine	GO:0015826	GO:0015195
4.S.181	trehalose	GO:0015771	GO:0015574
4.S.182	tripeptide	GO:0042939	GO:0042937
4.S.183	tryptophan	GO:0015827	GO:0015196
4.S.184	tyrosine	GO:0015828	GO:0005302
4.S.185	uracil	GO:0015857	GO:0015210
4.S.187	vitamin B12	GO:0015889	GO:0015235
4.S.188	water	GO:0006833	GO:0005372
4.S.189	xanthosine	GO:0015863	GO:0015553
4.S.190	xylose/H+	GO:0015753
4.S.191	Zn	GO:0006829	GO:0005385
4.S.192	chrysobactin	GO:0042932	GO:0042933
4.S.193	achromobactin	GO:0042935	GO:0042934
4.S.194	acetate
4.S.195	2-O-alpha-mannosyl-D-glycerate
4.S.196	Zn(2+)
4.S.197	N-acetylmuramic acid (MurNAc)
5	Cell processes	GO:0009987
5.1	Cell division	GO:0000910
5.2	Cell cycle physiology	GO:0007049
5.3	Motility (incl. chemotaxis, energytaxis, aerotaxis, redoxtaxis)	GO:0042330
5.4	Genetic exchange, recombination	GO:0006310
5.5	Adaptation to stress	GO:0006950
5.5.1	Osmotic pressure	GO:0006970
5.5.2	Temperature extremes	GO:0009266
5.5.3	Starvation response	GO:0042594
5.5.4	pH response	GO:0009268
5.5.5	Dessication	GO:0009269
5.5.6	Other stresses (mechanical, nutritional, oxidative)	GO:0009612	GO:0007584	GO:0006979
5.5.7	Fe aquisition	GO:0006826
5.6	Protection	GO:0006950
5.6.1	Radiation	GO:0009314
5.6.2	Detoxification (xenobiotic metabolism)	GO:0006805
5.6.3	Cell killing	GO:0001906
5.6.4	Drug resistance/sensitivity	GO:0042493
5.8	SOS response	GO:0009432
5.10	Defense/survival	GO:0006952
5.11	DNA uptake	GO:0009290
5.12	Biofilm production	GO:0042710
5.13	Virulence associated	GO:0009405
6	Cell structure	GO:0005575
6.1	Membrane	GO:0009274
6.2	Peptidoglycan (murein)	GO:0009274
6.3	Surface antigens (ECA, O antigen of LPS)
6.4	Flagellum	GO:0019861
6.5	Pilus	GO:0009289
6.6	Ribosome	GO:0009281
6.7	Capsule (M and K antigens)	GO:0030113
7	Location of gene products	GO:0005575
7.1	Cytoplasm	GO:0005737
7.2	Periplasmic space	GO:0042597
7.3	Inner membrane	GO:0005886
7.4	Outer membrane	GO:0009279
7.5	Extracellular	GO:0005576
8	extrachromosomal
8.1	Prophage genes and phage related functions
8.1.1	DNA packaging, phage assembly	GO:0006323	GO:0042963
8.1.2	Replication	GO:0006261
8.1.3	Regulation	GO:0019054
8.1.4	Integration, recombination	GO:0015074	GO:0006310	GO:0019047
8.1.5	Lysis	GO:0019077
8.1.6	Structural component	GO:0005198
8.2	Plasmid related
8.2.1	replication and maintenance	GO:0006261	GO:0006276
8.2.2	plasmid transfer	GO:0009291
8.3	Transposon related
8.3.1	transposases	GO:0004803
8.3.2	regulation of mobility	GO:0000337
8.4	Colicin related
9	DNA sites
10	cryptic genes
10.1	Partial similarity
10.2	Conserved hypothetical protein