Sinorhizobium meliloti 1021

InventorychromosomepSymApSymBProtocol/Nomenclature

Last updated March 13, 2001


The following table provides access to most recent the annotation performed on S. meliloti insertion sequences.
- "Multiple Alignment" provides a graphical view of the multiple alignment of the different copies of the same IS
- "MA with context" provides the same view as above exept that 20bp have been added both upstream and downstream the IS.
- "MA in MSF format" provides the first alignment in the common MSF format.
- the links accessible from SM codes draw a gene-map centered on the corresponding IS element
 
Multiple Alignment MA with context MA in MSF format
IS Family
ISRm name
Accession number 
  Chr (*) 
pSymA(*) 
pSymB(*) 
IS3
ISRm1
SMc03904

SMc01996

SMc03306

SMc02204

SMa3003

SMa3010

SMa3012

SMb21615

SMb21613

4 - 0
3 - 0
2 - 0
     
IS66
ISRm2
not identified / sequence not available in ISdb
/
/
/
IS256
ISRm3
SMc03083

SMc04379

SMc02916

SMc03749

SMa3002

SMa3004

SMa3006

SMa3008

SMa3011

3 - 1
4 - 1
/
     
IS5
ISRm4
absent in 1021
/
/
/
IS256
ISRm5
SMc04418/SMc04419

SMc04421/SMc04420

SMc04080

SMc01253

SMc01672

SMc00417

SMc01539

SMa3009*

SMb20060_AA

5 - 2
1 - 0 
1 - 0
     
IS3
ISRm6
absent in 1021
/
/
/
IS3
ISRm7
SMa4006
/
0 - 1
/
IS66
ISRm8
SMa3008
/
0 - 1
/
     
IS630
ISRm10
absent in 1021
/
/
/
IS630
ISRm11

(2011-2)

SMc03305

SMc02411

SMc01382

SMc03084

SMc02205

SMc00848

SMa3000

SMa3018

SMa3016

SMa3014/SMa3015

SMb21616

SMb21703/ SMb21705

6 - 0 
3 - 1
1 - 1
     
IS5
ISRm12
absent in 1021
/
/
/
     
IS5
ISRm13
absent in 1021
/
/
/
 
ISRm14
SMb20541_AA
 

SMb21085_AA
 

/
/
2 - 0
     
IS5
ISRm15
absent in 1021
/
/
/
 
ISRm17
SMc04424

SMc04422

SMc04423

SMb21614

SMa3005

SMa3013

SMa4002

2 - 1
2 - 1
0 - 1
 
ISRm18
SMc04425

SMc04426

2 - 0
/
/
IS110 ?
ISRm19
SMc04427

SMc01395

SMb21608

SMb21607

1 - 1
/
2 - 0
IS481 ?
ISRm20
SMc01254

SMc01255

SMc04464

SMc04465

SMb21606

3 - 1
/
0 - 1
ISAs1  ?
ISRm21
SMc04466

SMc04467

SMc01466

SMc00587

SMb21660

3 - 1
/
1 - 0
IS4
ISRm22
SMc04473

SMc04477

SMc04475

SMc04476

SMc01402

SMc04470

SMc04472

SMc04471

SMb21609

8 - 0
/
1 - 0
IS3
ISRm23
SMa4010

SMa4005/SMa4004

/
1 -1
/
IS30
ISRm24
SMc04883
SMa4003
SMa4008
SMa4013
0 - 1
3 - 0
/
 
ISRm25
SMa4009
SMa4012
/
1 - 1
/
IS66
ISRm26
SMc04869
1 - 0 
/
/
IS21
ISRm27
SMc04867
1 - 0
/
/
IS66
ISRm28
SMc04868
1 - 0
/
/
IS66
ISRm29
SMc04106

SMa4017

SMa4016

0 - 1
2 - 0 
/
?
ISRm30
SMc04870

SMa4015

1 - 0
1 - 0
/

(*)  The format used to count IS is
number of complete copies - number of partial or inactivated copies
Inactivated IS include : 
- IS containing another IS inserted into it (although a complete IS can be restored by precise excision of the internal IS).
- IS whith frameshifted-transposase