Ralstonia solanacearum sp.

3 hits

  1. RSc1721prhNRSc1721Transcriptional Regulator PrhN
  2. RSc1880prhORSc1880transcription regulator protein PrhO
  3. RSp0526RSp0526RSp0526TRANSCRIPTION REGULATOR, IscR family

prhN RSc1721
RSc1720
RSc1720 		Cluster
DrawMap 		XML file

FASTA file 		Extract
Sequence 		Codon
Usage 		Narcisse
StringString database Find Mutants

Find Clones 		Remora
Multalin 		RSc1722
RSc1722
ID prhN
AC NP_519842.1
LT RSc1721
SY RS02911
RX strain GMI1000
OR AL646052 from 1841340 to 1841906 on strand +
DE Transcriptional Regulator PrhN
IP Uncharacterised conserved protein UCP036158, transcription regulator, MarR-type HTH region
CL VI.A Not classified regulator
EC
GO
PM
AN
SQ 188 aa
  
........10........20........30........40........50
         |         |         |         |         |
MSKSSSSSKVDLPEAAANEGGKSGAIVSSAHLVSARSPELSEFEFALNTA
YNAYHRWCVRCMAAAGVRDLTFLDVLVVHHVNHRGRAKRLADICFVLNVE
DTHLVTYSLKKLQALELVEGTRNGKEVTYTTTATGETACARYREIREQCL
TSNISPGGEENAEIGELARLMRVLTGLYEQAARSATSL

    






    

        
            
                trembl_Pdown
            
        
        
B2UF63|B2UF63_BURPI

        
1

	
188

	
S=801 I=81 E=6.515e-88

	
Putative transcriptional regulator - Ralstonia pickettii 12J

    





    

        
            
                trembl_Pdown
            
        
        
A7CLE2|A7CLE2_BURPI

        
1

	
188

	
S=796 I=81 E=2.24698e-87

	
Putative transcriptional regulator - Ralstonia pickettii 12D

    





    

        
            
                trembl_Pdown
            
        
        
Q472C4|Q472C4_RALEJ

        
26

	
188

	
S=688 I=82 E=3.12289e-74

	
Putative uncharacterized protein - Ralstonia eutropha (strain JMP134) (Alcaligenes eutrophus)

    





    

        Iprscan
        IPR014601
	[PIRSF036158]
	
1

	
188

	
	
Uncharacterised conserved protein UCP036158, transcription regulator, MarR-type HTH region

    





    

        Iprscan
        
	[SSF46785]
	
36

	
160

	
	
-

    




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                pubmed
            
        
	    
            
Set of Uniprot with relevant PubMed cross-references ncbi-blastp

        		
 	    
            N/A hits
        
    

    

        
            
                swiss-prot
            
        
	    
            
Swiss-Prot ncbi-blastp

        		
 	    
            N/A hits
        
    

    
    

        
            
                trembl
            
        
	    
            
TrEMBL ncbi-blastp

        		 	    
        
            N/A hits
        
    

    
    

        
            
                trembl
            
        
    	
            
Ralstonia solanacearum str.GMI1000 proteome ncbi-blastp

        		        
        
            N/A hits
        
    

        
    

        
            
                hamap
            
        
	
            
HAMAP scan

        		        
        
            N/A hits
        
    

    
    

	    
            
                Interpro Scan
            
            
	        
                
IprScan

            		        
            
                N/A hits
            
    








prhO RSc1880




    

         
             
            RSc1879
            
RSc1879
            
        		


       
           
	   Cluster
	   
DrawMap
	   
        		
	
        
            XML file
        	


	    FASTA file
        		
	
	
             
            Extract
Sequence
            
        		
	
	
             
            Codon
Usage
            
        			
	
	
            Narcisse
            

        		
	
            
	    StringString database
            
        
	
            Find Mutants
        	


            Find Clones
    		
      	



        
    
             
            Remora
            
Multalin
            
    		

	
             
            RSc1881
            
RSc1881
            
        		

    





    

        ID
        prhO
    

    

        AC
        NP_520001.1
    

    

        LT
        RSc1880
    

    

        SY
        RS03440
    

    

        RX
        strain GMI1000
    

    

        OR
        AL646052 from 2063472 to 2064446 on strand +
    

   

        DE
        transcription regulator protein PrhO
  

   

        IP
        LysR, substrate-binding; Winged helix repressor DNA-binding
  

  

        CL
        VI.A Not classified regulator 
    

  

        EC
        
    

    
    

        GO
        DNA-dependent (GO:0006355)
Molecular Function: transcription factor activity (GO:0003700)		
    

  
  

        PM
        
    

  

        AN
        
    

  


    

        SQ
        324 aa
    

    

         
        
........10........20........30........40........50
         |         |         |         |         |
MELRQLEAFAAVMSTGSVTAAGKLLGRSQPAISRLIQDLEAEIGYALFTR
SGPRVSPTEQGFLLYEDVEHTLISLRQIRTRAEEIARGEARPLRLAATSA
LAAGLLPAALADDAELGRHIQIRSASPEQVVHAVLTGAADLGVSSLPLEH
RGVTVHWIGEAACVAAVQAGDPLAAGDRVALADCGGRRIITMHNPYRLRR
RLDFALAQAGVTPAELIETNASFNALTTVRAGLGVALLEPVTAYGVPIEG
VTVRPIDVSIPFFFGVITPEARRPSPAVTALIDALSRAAQRLLPDCKLHD
PARHASMLQVLYGEPLNETEGASA

    





Show or not Domain decomposition
 

    

        
            
                ralso
            
                
        
NP_520618.1 lcl|RSc2497

        
1

	
292

	
S=183 I=23 E=1.30461e-15

	
transcription regulator protein

     	

   





    

        
            
                ralso
            
                
        
NP_519469.1 lcl|cysB1-RSc1348

        
1

	
238

	
S=165 I=27 E=1.99661e-13

	
transcriptional regulator CysB-like protein

     	

   





    

        
            
                ralso
            
                
        
NP_520548.1 lcl|cysB2-RSc2427

        
1

	
238

	
S=131 I=25 E=2.99783e-09

	
transcriptional regulator CysB-like protein

     	

   





    

        
            
                ralso
            
                
        
NP_522503.1 lcl|nac-RSp0942

        
1

	
88

	
S=122 I=33 E=2.96933e-08

	
nitrogen assimilation transcriptional regulator

     	

   





    

        
            
                ralso
            
                
        
NP_521451.1 lcl|RSc3332

        
2

	
85

	
S=122 I=35 E=3.1562e-08

	
transcription regulator protein

     	

   





    

        
            
                ralso
            
                
        
NP_520619.1 lcl|RSc2498

        
1

	
78

	
S=111 I=35 E=6.11752e-07

	
transcription regulator protein

     	

   





    

        
            
                ralso
            
                
        
NP_522384.1 lcl|RSp0823

        
140

	
285

	
S=110 I=30 E=8.52046e-07

	
transcription regulator protein

     	

   





    

        
            
                ralso
            
                
        
NP_521399.1 lcl|RSc3280

        
2

	
75

	
S=110 I=39 E=9.88174e-07

	
transcription regulator protein

     	

   





    

        
            
                ralso
            
                
        
NP_518925.1 lcl|RSc0804

        
1

	
67

	
S=110 I=41 E=1.04124e-06

	
transcription regulator protein

     	

   





    

        
            
                ralso
            
                
        
NP_522558.1 lcl|RSp0997

        
5

	
88

	
S=109 I=36 E=1.27245e-06

	
transcription regulator protein

     	

   





    

        
                pubmed
        
        

        
1

	
274

	
S=283 I=30 E=1.20671e-25

	
Regulatory protein nocR ; Activator DNA-binding Plasmid Transcription regulation

	
Pubmed 1799698

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
1

	
274

	
S=283 I=30 E=1.28266e-25

	
Tiorf6 protein ; DNA-binding Plasmid Transcription regulation

	
Pubmed 10721727,9524202

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
1

	
274

	
S=278 I=29 E=4.58078e-25

	
Regulatory protein nocR ; Activator DNA-binding Plasmid Transcription regulation

	
Pubmed 8232213

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
4

	
285

	
S=273 I=30 E=1.80062e-24

	
Positive regulator for lys ; DNA-binding Transcription regulation

	
Pubmed 12754231

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
1

	
232

	
S=239 I=32 E=2.72723e-20

	
OccR ; DNA-binding Plasmid Transcription regulation

	
Pubmed 16547030

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
1

	
232

	
S=239 I=32 E=2.72723e-20

	
Octopine catabolism/uptake operon regulatory protein occR ; Activator DNA-binding Plasmid Transcription regulation

	
Pubmed 1799699

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
1

	
232

	
S=239 I=32 E=2.72723e-20

	
Octopine catabolism/uptake operon regulatory protein occR ; Activator DNA-binding Plasmid Transcription regulation

	
Pubmed 1799698

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
1

	
283

	
S=169 I=24 E=7.84828e-12

	
Uncharacterized HTH-type transcriptional regulator ywbI ; DNA-binding regulation

	
Pubmed 7934828

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
1

	
257

	
S=167 I=25 E=1.15181e-11

	
HTH-type transcriptional regulator alsR ; Acetoin biosynthesis DNA-binding regulation

	
Pubmed 7685336,9353933

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
1

	
238

	
S=163 I=28 E=3.45526e-11

	
Putative reguratory protein ; DNA-binding Transcription regulation

	
Pubmed 15451113

    

    

         
        
prodomImg

    





    

        
            
                sp_Pdown
            
        
        
Q00678|NOCR_AGRT5

        
1

	
274

	
S=283 I=30 E=7.60262e-26

	
Regulatory protein nocR - Agrobacterium tumefaciens (strain C58 / ATCC 33970)

    





    

        
            
                sp_Pdown
            
        
        
P35112|NOCR_AGRT7

        
1

	
274

	
S=278 I=29 E=2.88601e-25

	
Regulatory protein nocR - Agrobacterium tumefaciens (strain T37)

    





    

        
            
                sp_Pdown
            
        
        
P72294|OCCR_RHIME

        
1

	
260

	
S=264 I=31 E=1.62056e-23

	
Octopine catabolism/uptake operon regulatory protein occR - Rhizobium meliloti (Sinorhizobium meliloti)

    





    

        
            
                sp_Pdown
            
        
        
P0A4T3|OCCR_AGRTU

        
1

	
232

	
S=239 I=32 E=1.71823e-20

	
Octopine catabolism/uptake operon regulatory protein occR - Agrobacterium tumefaciens

    





    

        
            
                sp_Pdown
            
        
        
P0A4T4|OCCR_AGRT4

        
1

	
232

	
S=239 I=32 E=1.71823e-20

	
Octopine catabolism/uptake operon regulatory protein occR - Agrobacterium tumefaciens (strain Ach5)

    





    

        
            
                trembl_Pdown
            
        
        
A7CIS7|A7CIS7_BURPI

        
1

	
324

	
S=1367 I=83 E=4.06998e-156

	
Transcriptional regulator, LysR family precursor - Ralstonia pickettii 12D

    





    

        
            
                trembl_Pdown
            
        
        
B2U6T3|B2U6T3_BURPI

        
1

	
324

	
S=1346 I=82 E=1.32994e-153

	
Transcriptional regulator, LysR family precursor - Ralstonia pickettii 12J

    





    

        
            
                trembl_Pdown
            
        
        
Q471W3|Q471W3_RALEJ

        
1

	
320

	
S=930 I=59 E=3.05034e-103

	
Transcriptional regulator, LysR family - Ralstonia eutropha (strain JMP134) (Alcaligenes eutrophus)

    





    

        Iprscan
        IPR000847
	[PR00039]
	
18

	
29

	
	
Bacterial regulatory protein, LysR

    





    

        Iprscan
        IPR000847
	[PR00039]
	
29

	
39

	
	
Bacterial regulatory protein, LysR

    





    

        Iprscan
        IPR000847
	[PR00039]
	
39

	
50

	
	
Bacterial regulatory protein, LysR

    





    

        Iprscan
        IPR011991
	[G3DSA:1.10.10.10]
	
1

	
87

	
	
Winged helix repressor DNA-binding

    





    

        Iprscan
        
	[G3DSA:3.40.190.10]
	
164

	
262

	
	
-

    





    

        Iprscan
        IPR000847
	[PF00126]
	
3

	
62

	
	
Bacterial regulatory protein, LysR

    





    

        Iprscan
        IPR005119
	[PF03466]
	
86

	
290

	
	
LysR, substrate-binding

    





    

        Iprscan
        IPR000847
	[PS50931]
	
1

	
58

	
	
Bacterial regulatory protein, LysR

    





    

        Iprscan
        
	[SSF46785]
	
1

	
105

	
	
-

    





    

        Iprscan
        
	[SSF53850]
	
86

	
318

	
	
-

    




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DE


EC


GO


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CL

 
  Your email  
 
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Show or not Access unfiltered results






    

       
            
                pubmed
            
        
	    
            
Set of Uniprot with relevant PubMed cross-references ncbi-blastp

        		
 	    
            N/A hits
        
    

    

        
            
                swiss-prot
            
        
	    
            
Swiss-Prot ncbi-blastp

        		
 	    
            N/A hits
        
    

    
    

        
            
                trembl
            
        
	    
            
TrEMBL ncbi-blastp

        		 	    
        
            N/A hits
        
    

    
    

        
            
                trembl
            
        
    	
            
Ralstonia solanacearum str.GMI1000 proteome ncbi-blastp

        		        
        
            N/A hits
        
    

        
    

        
            
                hamap
            
        
	
            
HAMAP scan

        		        
        
            N/A hits
        
    

    
    

	    
            
                Interpro Scan
            
            
	        
                
IprScan

            		        
            
                N/A hits
            
    








RSp0526 RSp0526




    

         
             
            RSp0525
            
RSp0525
            
        		


       
           
	   Cluster
	   
DrawMap
	   
        		
	
        
            XML file
        	


	    FASTA file
        		
	
	
             
            Extract
Sequence
            
        		
	
	
             
            Codon
Usage
            
        			
	
	
            Narcisse
            

        		
	
            
	    StringString database
            
        
	
            Find Mutants
        	


            Find Clones
    		
      	



        
    
             
            Remora
            
Multalin
            
    		

	
             
            RSp0527
            
RSp0527
            
        		

    





    

        ID
        RSp0526
    

    

        AC
        NP_522087.1
    

    

        LT
        RSp0526
    

    

        SY
        RS00405
    

    

        RX
        strain GMI1000
    

    

        OR
        AL646053 from 656937 to 657368 on strand -
    

   

        DE
        TRANSCRIPTION REGULATOR, IscR family
  

   

        IP
        Transcriptional regulator, Rrf2
  

  

        CL
        VI.A Not classified regulator 
    

  

        EC
        
    

    
    

        GO
        
    

  
  

        PM
        
    

  

        AN
        
    

  


    

        SQ
        143 aa
    

    

         
        
........10........20........30........40........50
         |         |         |         |         |
MSTSSRFAVAVHILTLLASAGEPVPSSLIAGSVGTNPALIRRLVALLAEA
GFVTSQMGASGGSTLARPADRITLLDVFRAVESPVLIALPHSQPNPACEV
GREITGVLERVTARAQSAMEAELAAQTIAGMLTEVGRAQRRRA

    





Show or not Domain decomposition
 

    

        
            
                ralso
            
                
        
NP_519139.1 lcl|RSc1018

        
1

	
85

	
S=91 I=32 E=5.93224e-05

	
hypothetical protein

     	

   





    

        
                pubmed
        
        

        
4

	
135

	
S=273 I=42 E=4.07636e-25

	
Putative uncharacterized protein ywnA (YwnA protein)

	
Pubmed 9150240

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
1

	
135

	
S=228 I=42 E=1.17601e-19

	
Putative uncharacterized protein ; Plasmid

	
Pubmed 12791134,10954087

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
6

	
139

	
S=145 I=34 E=1.3884e-09

	
Transcriptional regulator ; Plasmid

	
Pubmed 15328093,18440636

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
26

	
124

	
S=142 I=34 E=3.62269e-09

	
Putative transcriptional regulator

	
Pubmed 18245259,17449683

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
26

	
139

	
S=123 I=29 E=5.99685e-07

	
Putative transcriptional regulator

	
Pubmed 17449683

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
1

	
134

	
S=122 I=27 E=8.95576e-07

	
Protein rrf2 ; DNA-binding

	
Pubmed 8335628

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
1

	
135

	
S=114 I=28 E=7.58222e-06

	
Similar to B.subtilis ywgB gene(27%-identity) (BH0656 protein) ; 2Fe-2S DNA-binding Iron Iron-sulfur Metal-binding

	
Pubmed 10086842

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
1

	
82

	
S=107 I=34 E=5.25292e-05

	
Putative uncharacterized protein ; 2Fe-2S DNA-binding Iron Iron-sulfur Metal-binding

	
Pubmed 15262926

    

    

         
        
prodomImg

    





    

        
            
                sp_Pdown
            
        
        
P33395|RRF2_DESVH

        
1

	
134

	
S=122 I=27 E=5.88255e-07

	
Protein rrf2 - Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)

    





    

        
            
                sp_Pdown
            
        
        
P67160|Y1318_MYCBO

        
1

	
134

	
S=105 I=28 E=6.69326e-05

	
Putative HTH-type transcriptional regulator Mb1318 - Mycobacterium bovis

    





    

        
            
                sp_Pdown
            
        
        
P67159|Y1287_MYCTU

        
1

	
134

	
S=105 I=28 E=6.69326e-05

	
Putative HTH-type transcriptional regulator Rv1287/MT1325 - Mycobacterium tuberculosis

    





    

        
            
                sp_Pdown
            
        
        
P71047|YWGB_BACSU

        
23

	
82

	
S=104 I=39 E=8.25114e-05

	
Putative HTH-type transcriptional regulator ywgB - Bacillus subtilis

    





    

        
            
                trembl_Pdown
            
        
        
Q46ZJ6|Q46ZJ6_RALEJ

        
1

	
142

	
S=512 I=75 E=3.19656e-53

	
Transcriptional regulator, BadM/Rrf2 family - Ralstonia eutropha (strain JMP134) (Alcaligenes eutrophus)

    





    

        
            
                trembl_Pdown
            
        
        
Q1LLK4|Q1LLK4_RALME

        
1

	
142

	
S=472 I=69 E=2.38734e-48

	
Transcriptional regulator, BadM/Rrf2 family precursor - Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839)

    





    

        
            
                trembl_Pdown
            
        
        
Q0K975|Q0K975_RALEH

        
9

	
142

	
S=445 I=69 E=3.71483e-45

	
Putative Transcriptional regulator - Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) (Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337))

    





    

        Iprscan
        IPR000944
	[PF02082]
	
1

	
123

	
	
Transcriptional regulator, Rrf2

    





    

        Iprscan
        IPR000944
	[PS51197]
	
1

	
133

	
	
Transcriptional regulator, Rrf2

    





    

        Iprscan
        
	[signalp]
	
1

	
20

	
	
-

    





    

        Iprscan
        
	[SSF46785]
	
5

	
133

	
	
-

    




Show or not Suggestions
Suggest an annotation


Move your mouse over each field to get more informations


ID


DE


EC


GO


PM



CC


CL

 
  Your email  
 
  Validation code (copy this one aqOyiOXN)  
 
     



Show or not Access unfiltered results






    

       
            
                pubmed
            
        
	    
            
Set of Uniprot with relevant PubMed cross-references ncbi-blastp

        		
 	    
            N/A hits
        
    

    

        
            
                swiss-prot
            
        
	    
            
Swiss-Prot ncbi-blastp

        		
 	    
            N/A hits
        
    

    
    

        
            
                trembl
            
        
	    
            
TrEMBL ncbi-blastp

        		 	    
        
            N/A hits
        
    

    
    

        
            
                trembl
            
        
    	
            
Ralstonia solanacearum str.GMI1000 proteome ncbi-blastp

        		        
        
            N/A hits
        
    

        
    

        
            
                hamap
            
        
	
            
HAMAP scan

        		        
        
            N/A hits
        
    

    
    

	    
            
                Interpro Scan
            
            
	        
                
IprScan

            		        
            
                N/A hits