Ralstonia solanacearum sp.

5 hits

RSc1721 prhN RSc1721 Transcriptional Regulator PrhN
RSc1880 prhO RSc1880 transcription regulator protein PrhO
RSc3149 efpH RSc3149 Transcription regulator protein EfpH
RSc3332 crgA RSc3332 transcription regulator protein CrgA
RSp0526 RSp0526 RSp0526 TRANSCRIPTION REGULATOR, IscR family

prhN RSc1721

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Multalin

RSc1722

ID	prhN
AC	NP_519842.1
LT	RSc1721
SY	RS02911
RX	strain GMI1000
OR	AL646052 from 1841340 to 1841906 on strand +
DE	Transcriptional Regulator PrhN
IP	Uncharacterised conserved protein UCP036158, transcription regulator, MarR-type HTH region
CL	VI.A Not classified regulator
EC
GO
PM
AN
SQ	188 aa
	........10........20........30........40........50 \| \| \| \| \| MSKSSSSSKVDLPEAAANEGGKSGAIVSSAHLVSARSPELSEFEFALNTA YNAYHRWCVRCMAAAGVRDLTFLDVLVVHHVNHRGRAKRLADICFVLNVE DTHLVTYSLKKLQALELVEGTRNGKEVTYTTTATGETACARYREIREQCL TSNISPGGEENAEIGELARLMRVLTGLYEQAARSATSL

B2UF63|B2UF63_BURPI

188

S=801 I=81 E=6.515e-88

Putative transcriptional regulator - Ralstonia pickettii 12J

A7CLE2|A7CLE2_BURPI

188

S=796 I=81 E=2.24698e-87

Putative transcriptional regulator - Ralstonia pickettii 12D

Q472C4|Q472C4_RALEJ

188

S=688 I=82 E=3.12289e-74

Putative uncharacterized protein - Ralstonia eutropha (strain JMP134) (Alcaligenes eutrophus)

IPR014601 [PIRSF036158]

188

Uncharacterised conserved protein UCP036158, transcription regulator, MarR-type HTH region

[SSF46785]

160

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	Set of Uniprot with relevant PubMed cross-references ncbi-blastp	N/A hits
	Swiss-Prot ncbi-blastp	N/A hits
	TrEMBL ncbi-blastp	N/A hits
	Ralstonia solanacearum str.GMI1000 proteome ncbi-blastp	N/A hits
	HAMAP scan	N/A hits
	IprScan	N/A hits

prhO RSc1880

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Multalin

RSc1881

ID	prhO
AC	NP_520001.1
LT	RSc1880
SY	RS03440
RX	strain GMI1000
OR	AL646052 from 2063472 to 2064446 on strand +
DE	transcription regulator protein PrhO
IP	LysR, substrate-binding; Winged helix repressor DNA-binding
CL	VI.A Not classified regulator
EC
GO	DNA-dependent (GO:0006355) Molecular Function: transcription factor activity (GO:0003700)
PM
AN
SQ	324 aa
	........10........20........30........40........50 \| \| \| \| \| MELRQLEAFAAVMSTGSVTAAGKLLGRSQPAISRLIQDLEAEIGYALFTR SGPRVSPTEQGFLLYEDVEHTLISLRQIRTRAEEIARGEARPLRLAATSA LAAGLLPAALADDAELGRHIQIRSASPEQVVHAVLTGAADLGVSSLPLEH RGVTVHWIGEAACVAAVQAGDPLAAGDRVALADCGGRRIITMHNPYRLRR RLDFALAQAGVTPAELIETNASFNALTTVRAGLGVALLEPVTAYGVPIEG VTVRPIDVSIPFFFGVITPEARRPSPAVTALIDALSRAAQRLLPDCKLHD PARHASMLQVLYGEPLNETEGASA

Domain decomposition

NP_520618.1 lcl|RSc2497

292

S=183 I=23 E=1.30461e-15

transcription regulator protein

NP_519469.1 lcl|cysB1-RSc1348

238

S=165 I=27 E=1.99661e-13

transcriptional regulator CysB-like protein

NP_520548.1 lcl|cysB2-RSc2427

238

S=131 I=25 E=2.99783e-09

transcriptional regulator CysB-like protein

NP_522503.1 lcl|nac-RSp0942

S=122 I=33 E=2.96933e-08

nitrogen assimilation transcriptional regulator

NP_521451.1 lcl|RSc3332

S=122 I=35 E=3.1562e-08

transcription regulator protein

NP_520619.1 lcl|RSc2498

S=111 I=35 E=6.11752e-07

transcription regulator protein

NP_522384.1 lcl|RSp0823

140

285

S=110 I=30 E=8.52046e-07

transcription regulator protein

NP_521399.1 lcl|RSc3280

S=110 I=39 E=9.88174e-07

transcription regulator protein

NP_518925.1 lcl|RSc0804

S=110 I=41 E=1.04124e-06

transcription regulator protein

NP_522558.1 lcl|RSp0997

S=109 I=36 E=1.27245e-06

transcription regulator protein

Q00678 sp|Q00678|NOCR_AGRT5

274

S=283 I=30 E=1.20671e-25

Regulatory protein nocR ; Activator DNA-binding Plasmid Transcription regulation

Pubmed 1799698

prodomImg

Q9R6P0 sp|Q9R6P0|Q9R6P0_9RHIZ

274

S=283 I=30 E=1.28266e-25

Tiorf6 protein ; DNA-binding Plasmid Transcription regulation

Pubmed 10721727,9524202

prodomImg

P35112 sp|P35112|NOCR_AGRT7

274

S=278 I=29 E=4.58078e-25

Regulatory protein nocR ; Activator DNA-binding Plasmid Transcription regulation

Pubmed 8232213

prodomImg

Q84BW1 sp|Q84BW1|Q84BW1_9BURK

285

S=273 I=30 E=1.80062e-24

Positive regulator for lys ; DNA-binding Transcription regulation

Pubmed 12754231

prodomImg

Q20HV1 sp|Q20HV1|Q20HV1_9RHIZ

232

S=239 I=32 E=2.72723e-20

OccR ; DNA-binding Plasmid Transcription regulation

Pubmed 16547030

prodomImg

P0A4T3 sp|P0A4T3|OCCR_AGRTU

232

S=239 I=32 E=2.72723e-20

Octopine catabolism/uptake operon regulatory protein occR ; Activator DNA-binding Plasmid Transcription regulation

Pubmed 1799699

prodomImg

P0A4T4 sp|P0A4T4|OCCR_AGRT4

232

S=239 I=32 E=2.72723e-20

Octopine catabolism/uptake operon regulatory protein occR ; Activator DNA-binding Plasmid Transcription regulation

Pubmed 1799698

prodomImg

P39592 sp|P39592|YWBI_BACSU

283

S=169 I=24 E=7.84828e-12

Uncharacterized HTH-type transcriptional regulator ywbI ; DNA-binding regulation

Pubmed 7934828

prodomImg

Q04778 sp|Q04778|ALSR_BACSU

257

S=167 I=25 E=1.15181e-11

HTH-type transcriptional regulator alsR ; Acetoin biosynthesis DNA-binding regulation

Pubmed 7685336,9353933

prodomImg

Q60G67 sp|Q60G67|Q60G67_9NOCA

238

S=163 I=28 E=3.45526e-11

Putative reguratory protein ; DNA-binding Transcription regulation

Pubmed 15451113

prodomImg

Q00678|NOCR_AGRT5

274

S=283 I=30 E=7.60262e-26

Regulatory protein nocR - Agrobacterium tumefaciens (strain C58 / ATCC 33970)

P35112|NOCR_AGRT7

274

S=278 I=29 E=2.88601e-25

Regulatory protein nocR - Agrobacterium tumefaciens (strain T37)

P72294|OCCR_RHIME

260

S=264 I=31 E=1.62056e-23

Octopine catabolism/uptake operon regulatory protein occR - Rhizobium meliloti (Sinorhizobium meliloti)

P0A4T3|OCCR_AGRTU

232

S=239 I=32 E=1.71823e-20

Octopine catabolism/uptake operon regulatory protein occR - Agrobacterium tumefaciens

P0A4T4|OCCR_AGRT4

232

S=239 I=32 E=1.71823e-20

Octopine catabolism/uptake operon regulatory protein occR - Agrobacterium tumefaciens (strain Ach5)

A7CIS7|A7CIS7_BURPI

324

S=1367 I=83 E=4.06998e-156

Transcriptional regulator, LysR family precursor - Ralstonia pickettii 12D

B2U6T3|B2U6T3_BURPI

324

S=1346 I=82 E=1.32994e-153

Transcriptional regulator, LysR family precursor - Ralstonia pickettii 12J

Q471W3|Q471W3_RALEJ

320

S=930 I=59 E=3.05034e-103

Transcriptional regulator, LysR family - Ralstonia eutropha (strain JMP134) (Alcaligenes eutrophus)

IPR000847 [PR00039]

Bacterial regulatory protein, LysR

IPR000847 [PR00039]

Bacterial regulatory protein, LysR

IPR000847 [PR00039]

Bacterial regulatory protein, LysR

IPR011991 [G3DSA:1.10.10.10]

Winged helix repressor DNA-binding

[G3DSA:3.40.190.10]

164

262

IPR000847 [PF00126]

Bacterial regulatory protein, LysR

IPR005119 [PF03466]

290

LysR, substrate-binding

IPR000847 [PS50931]

Bacterial regulatory protein, LysR

[SSF46785]

105

[SSF53850]

318

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ID
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	Set of Uniprot with relevant PubMed cross-references ncbi-blastp	N/A hits
	Swiss-Prot ncbi-blastp	N/A hits
	TrEMBL ncbi-blastp	N/A hits
	Ralstonia solanacearum str.GMI1000 proteome ncbi-blastp	N/A hits
	HAMAP scan	N/A hits
	IprScan	N/A hits

efpH RSc3149

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Multalin

RSc3150

ID	efpH
AC	NP_521270.1
LT	RSc3149
SY	RS00451
RX	strain GMI1000
OR	AL646052 from 3399263 to 3399604 on strand +
DE	Transcription regulator protein EfpH
IP	Lambda repressor-like, DNA-binding
CL	VI.A Not classified regulator
EC
GO	Molecular Function: DNA binding (GO:0003677) Molecular Function: sequence-specific DNA binding (GO:0043565)
PM
AN
SQ	113 aa
	........10........20........30........40........50 \| \| \| \| \| MLPGMTAKRTDPSTSRPAPILSALGERIKLCRHAADKSQETLAFEALVDR TYISSIERGIANPSIETLANICYALNVTLAELFGPMDGISLKPTGTRRAN AATPPEIKRSRLR

Domain decomposition

NP_519218.1 lcl|RSc1097

113

S=424 I=79 E=1.78712e-45

transcription regulator protein

NP_521253.1 lcl|RSc3132

102

S=98 I=36 E=5.28059e-06

putative transcription regulator protein

Q8GC35 sp|Q8GC35|Q8GC35_LEUCI

S=120 I=41 E=7.25209e-07

Putative regulatory protein ; Plasmid

Pubmed 15212790

prodomImg

P43640 sp|P43640|MUNC_MYCSP

S=118 I=44 E=1.54842e-06

Regulatory protein munI ; DNA-binding Restriction system Transcription regulation

Pubmed 8181741

prodomImg

Q7X0F0 sp|Q7X0F0|Q7X0F0_AERHY

S=114 I=40 E=4.8945e-06

C.AhdI

Pubmed 12771207,15713456

prodomImg

Q8RNV9 sp|Q8RNV9|Q8RNV9_9BACL

S=113 I=38 E=5.52992e-06

Regulatory protein C.BcnI

Pubmed 11917015

prodomImg

P23939 sp|P23939|CEBA_BACAM

S=108 I=44 E=2.19274e-05

BamHI control element ; DNA-binding Plasmid Restriction system Transcription regulation

Pubmed 1901989

prodomImg

Q45487 sp|Q45487|Q45487_BACSU

S=104 I=34 E=7.49694e-05

BglII control element

Pubmed 9073062

prodomImg

P43640|MUNC_MYCSP

S=118 I=44 E=1.0245e-06

Regulatory protein munI - Mycoplasma sp.

P23939|CEBA_BACAM

S=108 I=44 E=1.45081e-05

BamHI control element - Bacillus amyloliquefaciens

A8KSX3|A8KSX3_BURPS

113

S=464 I=81 E=1.07419e-47

Probable transcription regulator protein - Burkholderia pseudomallei Pasteur 52237

Q2T2D2|Q2T2D2_BURTA

113

S=458 I=78 E=6.76133e-47

Possible transcriptional regulator, XRE family - Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301)

A0K375|A0K375_BURCH

113

S=430 I=89 E=1.71435e-43

Transcriptional regulator, XRE family - Burkholderia cenocepacia (strain HI2424)

[G3DSA:1.10.260.40]

IPR001387 [PF01381]

Helix-turn-helix type 3

IPR001387 [SM00530]

Helix-turn-helix type 3

IPR001387 [PS50943]

Helix-turn-helix type 3

IPR010982 [SSF47413]

Lambda repressor-like, DNA-binding

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	Set of Uniprot with relevant PubMed cross-references ncbi-blastp	N/A hits
	Swiss-Prot ncbi-blastp	N/A hits
	TrEMBL ncbi-blastp	N/A hits
	Ralstonia solanacearum str.GMI1000 proteome ncbi-blastp	N/A hits
	HAMAP scan	N/A hits
	IprScan	N/A hits

crgA RSc3332

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Multalin

RSc3333

ID	crgA
AC	NP_521451.1
LT	RSc3332
SY	RS02566
RX	strain GMI1000
OR	AL646052 from 3594672 to 3595568 on strand +
DE	transcription regulator protein CrgA
IP	LysR, substrate-binding; Winged helix repressor DNA-binding
CL	VI.A Not classified regulator
EC
GO	DNA-dependent (GO:0006355) Molecular Function: transcription factor activity (GO:0003700)
PM
AN
SQ	298 aa
	........10........20........30........40........50 \| \| \| \| \| MDKLRSMETFVAVVDAGSFTEAAMQLEMSAVMVGKYVRELETRLGARLLQ RSTRRQSLTDAGRVFYEDAKRVLEQVRWAETSVERLRAQPSGTLRVSAPT TFGACVIAPLTATFQQAHPQVRVELDLSNRMVDLADEGFDLAVRIGALGD ADLVAKPLCAYRMVISASPDYLARHGRPETPADLPAHRCLSHMVWNSRNA WQLSGWDGTTSWRDDPAFSCNDGHGLRMAAIAGAGLLLQPEVLVAEDLAS GRLVRVLQTYAPQPRPIHLVYRQDRRPLPKLTAFTAHLLEQVPARGLT

Domain decomposition

NP_520448.1 lcl|RSc2327

284

S=598 I=42 E=5.56579e-66

transcription regulator protein

NP_522707.1 lcl|RSp1146

284

S=564 I=43 E=8.14109e-62

transcription regulator protein

NP_522471.1 lcl|RSp0910

294

S=451 I=36 E=4.29513e-48

transcription regulator protein

NP_521399.1 lcl|RSc3280

288

S=433 I=37 E=5.286e-46

transcription regulator protein

NP_522008.1 lcl|RSp0447

295

S=427 I=35 E=2.81927e-45

transcription regulator protein

NP_519481.1 lcl|RSc1360

279

S=427 I=38 E=3.38574e-45

transcription regulator protein

NP_519273.1 lcl|RSc1152

284

S=407 I=37 E=9.70722e-43

transcription regulator protein

NP_522671.1 lcl|RSp1110

285

S=403 I=33 E=2.71583e-42

transcription regulator protein

NP_518663.1 lcl|RSc0542

270

S=392 I=37 E=5.12808e-41

transcription regulator protein

NP_518186.1 lcl|RSc0065

291

S=392 I=33 E=5.54668e-41

transcription regulator protein

A9QP53 sp|A9QP53|A9QP53_9BACT

296

S=489 I=36 E=1.12177e-50

Transcriptional regulator

Pubmed 18028413

prodomImg

O67999 sp|O67999|O67999_BRAJA

291

S=451 I=38 E=4.96529e-46

GstR ; DNA-binding Transcription regulation

Pubmed 10419971

prodomImg

Q6WLC9 sp|Q6WLC9|Q6WLC9_9BACT

292

S=433 I=34 E=7.27487e-44

Csw018 ; DNA-binding Transcription regulation

Pubmed 14660379

prodomImg

P43011 sp|P43011|Y1364_HAEIN

288

S=416 I=32 E=8.13438e-42

Uncharacterized HTH-type transcriptional regulator HI1364 ; DNA-binding regulation

Pubmed 8635745

prodomImg

Q8VL17 sp|Q8VL17|Q8VL17_BURCE

284

S=405 I=34 E=1.73535e-40

Putative transcriptional regulator CeoR ; DNA-binding regulation

Pubmed 14755343

prodomImg

B4Y337 sp|B4Y337|B4Y337_9BURK

275

S=398 I=39 E=1.34653e-39

Putative LysR family transcriptional regulator

Pubmed 18487337

prodomImg

Q6TLK2 sp|Q6TLK2|Q6TLK2_9PSED

261

S=390 I=34 E=1.03576e-38

PltR ; DNA-binding Transcription regulation

Pubmed 15033239,16581203

prodomImg

Q693A7 sp|Q693A7|Q693A7_YEREN

290

S=386 I=32 E=3.39018e-38

Putative lysR-family transcriptional regulatory protein ; DNA-binding regulation

Pubmed 16177365

prodomImg

Q9JPU9 sp|Q9JPU9|Q9JPU9_NEIME

292

S=385 I=30 E=5.06293e-38

CrgA ; DNA-binding Transcription regulation

Pubmed 10698947

prodomImg

Q2WCV7 sp|Q2WCV7|Q2WCV7_YEREN

290

S=383 I=32 E=7.76142e-38

Putative lysR-family transcriptional regulator ; DNA-binding regulation

Pubmed 16390445

prodomImg

P43011|Y1364_HAEIN

288

S=416 I=32 E=5.12487e-42

Uncharacterized HTH-type transcriptional regulator HI1364 - Haemophilus influenzae

P30864|YAFC_ECOLI

292

S=380 I=32 E=1.11948e-37

Uncharacterized HTH-type transcriptional regulator yafC - Escherichia coli (strain K12)

P67662|AAER_ECOLI

278

S=374 I=33 E=5.28464e-37

HTH-type transcriptional activator aaeR - Escherichia coli (strain K12)

P67663|AAER_ECOL6

278

S=374 I=33 E=5.28464e-37

HTH-type transcriptional activator aaeR - Escherichia coli O6

P67664|AAER_ECO57

278

S=374 I=33 E=5.28464e-37

HTH-type transcriptional activator aaeR - Escherichia coli O157:H7

A2W2R6|A2W2R6_9BURK

295

S=1100 I=72 E=7.52081e-124

Regulatory protein, LysR - Burkholderia cenocepacia PC184

Q1BJ58|Q1BJ58_BURCA

295

S=1094 I=72 E=3.77371e-123

Transcriptional regulator, LysR family - Burkholderia cenocepacia (strain AU 1054)

A0B395|A0B395_BURCH

295

S=1094 I=72 E=3.77371e-123

Transcriptional regulator, LysR family - Burkholderia cenocepacia (strain HI2424)

IPR011991 [G3DSA:1.10.10.10]

Winged helix repressor DNA-binding

[G3DSA:3.40.190.10]

170

IPR000847 [PF00126]

Bacterial regulatory protein, LysR

IPR005119 [PF03466]

293

LysR, substrate-binding

IPR000847 [PS50931]

Bacterial regulatory protein, LysR

[SSF46785]

106

[SSF53850]

293

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ID
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	Set of Uniprot with relevant PubMed cross-references ncbi-blastp	N/A hits
	Swiss-Prot ncbi-blastp	N/A hits
	TrEMBL ncbi-blastp	N/A hits
	Ralstonia solanacearum str.GMI1000 proteome ncbi-blastp	N/A hits
	HAMAP scan	N/A hits
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RSp0526 RSp0526

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Multalin

RSp0527

ID	RSp0526
AC	NP_522087.1
LT	RSp0526
SY	RS00405
RX	strain GMI1000
OR	AL646053 from 656937 to 657368 on strand -
DE	TRANSCRIPTION REGULATOR, IscR family
IP	Transcriptional regulator, Rrf2
CL	VI.A Not classified regulator
EC
GO
PM
AN
SQ	143 aa
	........10........20........30........40........50 \| \| \| \| \| MSTSSRFAVAVHILTLLASAGEPVPSSLIAGSVGTNPALIRRLVALLAEA GFVTSQMGASGGSTLARPADRITLLDVFRAVESPVLIALPHSQPNPACEV GREITGVLERVTARAQSAMEAELAAQTIAGMLTEVGRAQRRRA

Domain decomposition

NP_519139.1 lcl|RSc1018

S=91 I=32 E=5.93224e-05

hypothetical protein

P71036 sp|P71036|P71036_BACSU

135

S=273 I=42 E=4.07636e-25

Putative uncharacterized protein ywnA (YwnA protein)

Pubmed 9150240

prodomImg

Q83WZ4 sp|Q83WZ4|Q83WZ4_STRRO

135

S=228 I=42 E=1.17601e-19

Putative uncharacterized protein ; Plasmid

Pubmed 12791134,10954087

prodomImg

B0ZE20 sp|B0ZE20|B0ZE20_ECOLX

139

S=145 I=34 E=1.3884e-09

Transcriptional regulator ; Plasmid

Pubmed 15328093,18440636

prodomImg

Q38K85 sp|Q38K85|Q38K85_LACRE

124

S=142 I=34 E=3.62269e-09

Putative transcriptional regulator

Pubmed 18245259,17449683

prodomImg

Q38KB1 sp|Q38KB1|Q38KB1_LACRE

139

S=123 I=29 E=5.99685e-07

Putative transcriptional regulator

Pubmed 17449683

prodomImg

P33395 sp|P33395|RRF2_DESVH

134

S=122 I=27 E=8.95576e-07

Protein rrf2 ; DNA-binding

Pubmed 8335628

prodomImg

Q9Z9W2 sp|Q9Z9W2|Q9Z9W2_BACHD

135

S=114 I=28 E=7.58222e-06

Similar to B.subtilis ywgB gene(27%-identity) (BH0656 protein) ; 2Fe-2S DNA-binding Iron Iron-sulfur Metal-binding

Pubmed 10086842

prodomImg

Q6F4M5 sp|Q6F4M5|Q6F4M5_RHOOP

S=107 I=34 E=5.25292e-05

Putative uncharacterized protein ; 2Fe-2S DNA-binding Iron Iron-sulfur Metal-binding

Pubmed 15262926

prodomImg

P33395|RRF2_DESVH

134

S=122 I=27 E=5.88255e-07

Protein rrf2 - Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)

P67160|Y1318_MYCBO

134

S=105 I=28 E=6.69326e-05

Putative HTH-type transcriptional regulator Mb1318 - Mycobacterium bovis

P67159|Y1287_MYCTU

134

S=105 I=28 E=6.69326e-05

Putative HTH-type transcriptional regulator Rv1287/MT1325 - Mycobacterium tuberculosis

P71047|YWGB_BACSU

S=104 I=39 E=8.25114e-05

Putative HTH-type transcriptional regulator ywgB - Bacillus subtilis

Q46ZJ6|Q46ZJ6_RALEJ

142

S=512 I=75 E=3.19656e-53

Transcriptional regulator, BadM/Rrf2 family - Ralstonia eutropha (strain JMP134) (Alcaligenes eutrophus)

Q1LLK4|Q1LLK4_RALME

142

S=472 I=69 E=2.38734e-48

Transcriptional regulator, BadM/Rrf2 family precursor - Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839)

Q0K975|Q0K975_RALEH

142

S=445 I=69 E=3.71483e-45

Putative Transcriptional regulator - Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) (Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337))

IPR000944 [PF02082]

123

Transcriptional regulator, Rrf2

IPR000944 [PS51197]

133

Transcriptional regulator, Rrf2

[signalp]

[SSF46785]

133

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	Set of Uniprot with relevant PubMed cross-references ncbi-blastp	N/A hits
	Swiss-Prot ncbi-blastp	N/A hits
	TrEMBL ncbi-blastp	N/A hits
	Ralstonia solanacearum str.GMI1000 proteome ncbi-blastp	N/A hits
	HAMAP scan	N/A hits
	IprScan	N/A hits

prhN RSc1721

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prhO RSc1880

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efpH RSc3149

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crgA RSc3332

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RSp0526 RSp0526

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