Ralstonia solanacearum sp.

2 hits

  1. RSc1319RSc1319Bifunctional UDP-4-keto-pentose/UDP-xylose synthase
  2. RSc1449queERSc14497-carboxy-7-deazaguanine synthase

RSc1319
RSc1318
RSc1318 		Cluster
DrawMap 		XML file

FASTA file 		Extract
Sequence 		Codon
Usage 		Narcisse
StringString database Find Mutants

Find Clones 		Remora
Multalin 		RSc1320
RSc1320
ID
AC NP_519440.1
LT RSc1319
SY RS02842
RX strain GMI1000
OR AL646052 from 1404147 to 1405202 on strand -
DE Bifunctional UDP-4-keto-pentose/UDP-xylose synthase
IP NAD-dependent epimerase/dehydratase;
CL II.B.2 lipopolysaccharides
EC
GO Biological Process: metabolic process (GO:0008152)
Biological Process: cellular metabolic process (GO:0044237)
Molecular Function: catalytic activity (GO:0003824)
Molecular Function: binding (GO:0005488)
Molecular Function: coenzyme binding (GO:0050662)
PM
AN
SQ 351 aa
  
........10........20........30........40........50
         |         |         |         |         |
MKKVLILGVNGFIGHHLSKRILESTDPEISQWEVYGMDMQTERLGDLVNH
PRMHFFEGDITINKEWVEYHVRKCDVILPLVAIATPSTYVKAPLRVFELD
FEANLPIVRSAAKYGKHLVFPSTSEVYGMCGDDEFDPEASPLVYGPINKP
RWIYACSKQLMDRVIWGYGMEGLNFTLFRPFNWIGPGLDSIHTPKEGSSR
VVTQFLGHIVRGENIQLVDGGQQKRAFTYVDDGIDALVRIIANKDGVASG
KIYNIGNPSNNYSVRELAEMMLKKAGTIAEYKENAQKVKLVETTSGAYYG
KGYQDVQNRVPKIANTMEELGWKPTTTMEDTLANIFEAYREHAAEARSLV
D

    





Show or not Domain decomposition
 

    

        
                pubmed
        
        

        
3

	
343

	
S=1001 I=55 E=1.14683e-112

	
Bifunctional polymyxin resistance protein arnA EC=2.1.2.n1 EC=1.1.1.n1 ; Antibiotic Lipid biosynthesis Lipopolysaccharide Methyltransferase Mult

	
Pubmed 15583148

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
3

	
339

	
S=982 I=55 E=2.57584e-110

	
Bifunctional polymyxin resistance protein arnA EC=2.1.2.n1 EC=1.1.1.n1 ; Antibiotic Lipid biosynthesis Lipopolysaccharide Methyltransferase Multi

	
Pubmed 9570402

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
3

	
339

	
S=970 I=53 E=7.45608e-109

	
Bifunctional polymyxin resistance protein arnA EC=2.1.2.n1 EC=1.1.1.n1 ; Antibiotic Lipid biosynthesis Lipopolysaccharide Methyltransferase Multi

	
Pubmed 11706007

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
3

	
346

	
S=556 I=36 E=1.0495e-58

	
UDP-D-apiose/UDP-D-xylose synthase

	
Pubmed 16549428

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
4

	
346

	
S=552 I=36 E=3.17591e-58

	
Putative dTDP-glucose 4-6-dehydratase (Putative uncharacterized protein) (UDP-D-apiose/UDP-D-xylose synthase) (At2g27860/F15K20.4)

	
Pubmed 12969423

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
162

	
346

	
S=336 I=38 E=4.25357e-32

	
Nucleoside-diphopshate-sugar dehydratase

	
Pubmed 17041024

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
1

	
342

	
S=294 I=29 E=5.50219e-27

	
Glucuronic acid decarboxylase

	
Pubmed 14528002,17918933

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
3

	
342

	
S=293 I=28 E=6.84223e-27

	
Putative UDP-glucose 4-epimerase

	
Pubmed 16873021

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
3

	
340

	
S=283 I=29 E=1.26963e-25

	
DTDP-glucose 4-6-dehydratase (UDP-glucuronic acid decarboxylase)

	
Pubmed 10048488

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
1

	
341

	
S=273 I=27 E=1.79794e-24

	
dTDP-glucose 4,6-dehydratase EC=4.2.1.46 ; Lyase

	
Pubmed 18043661

    

    

         
        
prodomImg

    





    

        
            
                sp_Pdown
            
        
        
A8GDR7|ARNA_SERP5

        
3

	
339

	
S=1016 I=54 E=1.13791e-114

	
Bifunctional polymyxin resistance protein arnA [Includes: UDP-4-amino-4-deoxy-L-arabinose formyltransferase - Serratia proteamaculans (strain 568)

    





    

        
            
                sp_Pdown
            
        
        
Q7N3Q7|ARNA_PHOLL

        
2

	
345

	
S=1008 I=54 E=1.06036e-113

	
Bifunctional polymyxin resistance protein arnA [Includes: UDP-4-amino-4-deoxy-L-arabinose formyltransferase - Photorhabdus luminescens subsp. laumondii

    





    

        
            
                sp_Pdown
            
        
        
A0KGY6|ARNA_AERHH

        
1

	
343

	
S=1007 I=55 E=1.36541e-113

	
Bifunctional polymyxin resistance protein arnA [Includes: UDP-4-amino-4-deoxy-L-arabinose formyltransferase - Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240)

    





    

        
            
                sp_Pdown
            
        
        
A1JPN5|ARNA_YERE8

        
3

	
339

	
S=1003 I=55 E=5.04939e-113

	
Bifunctional polymyxin resistance protein arnA [Includes: UDP-4-amino-4-deoxy-L-arabinose formyltransferase - Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081)

    





    

        
            
                sp_Pdown
            
        
        
A4TIM4|ARNA_YERPP

        
3

	
343

	
S=1002 I=55 E=5.80528e-113

	
Bifunctional polymyxin resistance protein arnA [Includes: UDP-4-amino-4-deoxy-L-arabinose formyltransferase - Yersinia pestis (strain Pestoides F)

    





    

        
            
                trembl_Pdown
            
        
        
B2UAS2|B2UAS2_BURPI

        
1

	
351

	
S=1719 I=91 E=0

	
NAD-dependent epimerase/dehydratase - Ralstonia pickettii 12J

    





    

        
            
                trembl_Pdown
            
        
        
A7CD54|A7CD54_BURPI

        
1

	
351

	
S=1719 I=91 E=0

	
NAD-dependent epimerase/dehydratase - Ralstonia pickettii 12D

    





    

        
            
                trembl_Pdown
            
        
        
B1JTE2|B1JTE2_BURCC

        
2

	
351

	
S=1578 I=83 E=0

	
NAD-dependent epimerase/dehydratase - Burkholderia cenocepacia (strain MC0-3)

    





    

        Iprscan
        IPR016040
	[G3DSA:3.40.50.720]
	
2

	
285

	
	
NAD(P)-binding

    





    

        Iprscan
        
	[PTHR10366]
	
6

	
347

	
	
-

    





    

        Iprscan
        
	[PTHR10366:SF35]
	
301

	
347

	
	
-

    





    

        Iprscan
        
	[PTHR10366:SF35]
	
6

	
285

	
	
-

    





    

        Iprscan
        
	[PTHR10366:SF35]
	
6

	
347

	
	
-

    





    

        Iprscan
        IPR001509
	[PF01370]
	
4

	
256

	
	
NAD-dependent epimerase/dehydratase

    





    

        Iprscan
        IPR016040
	[SSF51735]
	
1

	
348

	
	
NAD(P)-binding

    




Show or not Suggestions
Suggest an annotation


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ID


DE


EC


GO


PM



CC


CL

 
  Your email  
 
  Validation code (copy this one 1sSMDh5X)  
 
     



Show or not Access unfiltered results






    

       
            
                pubmed
            
        
	    
            
Set of Uniprot with relevant PubMed cross-references ncbi-blastp

        		
 	    
            N/A hits
        
    

    

        
            
                swiss-prot
            
        
	    
            
Swiss-Prot ncbi-blastp

        		
 	    
            N/A hits
        
    

    
    

        
            
                trembl
            
        
	    
            
TrEMBL ncbi-blastp

        		 	    
        
            N/A hits
        
    

    
    

        
            
                trembl
            
        
    	
            
Ralstonia solanacearum str.GMI1000 proteome ncbi-blastp

        		        
        
            N/A hits
        
    

        
    

        
            
                hamap
            
        
	
            
HAMAP scan

        		        
        
            N/A hits
        
    

    
    

	    
            
                Interpro Scan
            
            
	        
                
IprScan

            		        
            
                N/A hits
            
    








queE RSc1449




    

         
             
            RSc1448
            
RSc1448
            
        		


       
           
	   Cluster
	   
DrawMap
	   
        		
	
        
            XML file
        	


	    FASTA file
        		
	
	
             
            Extract
Sequence
            
        		
	
	
             
            Codon
Usage
            
        			
	
	
            Narcisse
            

        		
	
            
	    StringString database
            
        
	
            Find Mutants
        	


            Find Clones
    		
      	



        
    
             
            Remora
            
Multalin
            
    		

	
             
            RSc1450
            
RSc1450
            
        		

    





    

        ID
        queE
    

    

        AC
        NP_519570.1
    

    

        LT
        RSc1449
    

    

        SY
        RS03858
    

    

        RX
        strain GMI1000
    

    

        OR
        AL646052 from 1551351 to 1551989 on strand +
    

   

        DE
        7-carboxy-7-deazaguanine synthase
  

   

        IP
        Radical SAM
  

  

        CL
        I.D.2 purine ribonucleotide biosynthesis 
    

  

        EC
        
    

    
    

        GO
        Molecular Function: catalytic activity (GO:0003824)
Molecular Function: iron-sulfur cluster binding (GO:0051536)		
    

  
  

        PM
        
    

  

        AN
        
    

  


    

        SQ
        212 aa
    

    

         
        
........10........20........30........40........50
         |         |         |         |         |
MTYAVKEIFYTLQGEGANTGRAAVFCRFAGCNLWSGREADRAAAICQFCD
TDFVGTDGTLGGKYPTADALADTVAAQWPAAATGGRPLVVCTGGEPLLQL
DRPLIDALHARGFEIAIETNGTLAVPDGIDWVCVSPKMGAELVVTRGDEL
KVVIPQPGQDLDAYERLDFRHFFLQPMDGPLARRNTALAVELCQRRPRWH
LSLQTHKMLGIR

    





Show or not Domain decomposition
 

    

        
                pubmed
        
        

        
2

	
125

	
S=147 I=36 E=1.87494e-09

	
Putative uncharacterized protein

	
Pubmed 8626299,8824639

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
5

	
125

	
S=120 I=33 E=3.35425e-06

	
Putative organic radical activating enzyme

	
Pubmed 15793123

    

    

         
        
prodomImg

    





    

        
            
                sp_Pdown
            
        
        
P45097|Y1189_HAEIN

        
2

	
212

	
S=212 I=31 E=1.51687e-17

	
Uncharacterized protein HI1189 - Haemophilus influenzae

    





    

        
            
                sp_Pdown
            
        
        
P64556|YGCF_SHIFL

        
1

	
211

	
S=178 I=34 E=2.14268e-13

	
Uncharacterized protein ygcF - Shigella flexneri

    





    

        
            
                sp_Pdown
            
        
        
P64554|YGCF_ECOLI

        
1

	
211

	
S=178 I=34 E=2.14268e-13

	
Uncharacterized protein ygcF - Escherichia coli (strain K12)

    





    

        
            
                sp_Pdown
            
        
        
P64555|YGCF_ECO57

        
1

	
211

	
S=178 I=34 E=2.14268e-13

	
Uncharacterized protein ygcF - Escherichia coli O157:H7

    





    

        
            
                trembl_Pdown
            
        
        
A7CJK7|A7CJK7_BURPI

        
1

	
212

	
S=1044 I=91 E=2.59543e-117

	
Putative uncharacterized protein - Ralstonia pickettii 12D

    





    

        
            
                trembl_Pdown
            
        
        
B2UBF1|B2UBF1_BURPI

        
1

	
212

	
S=1044 I=91 E=2.71107e-117

	
Putative uncharacterized protein - Ralstonia pickettii 12J

    





    

        
            
                trembl_Pdown
            
        
        
Q0KAE5|Q0KAE5_RALEH

        
1

	
212

	
S=943 I=83 E=5.07229e-105

	
Organic radical activating enzyme - Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) (Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337))

    





    

        Iprscan
        IPR007197
	[PF04055]
	
46

	
123

	
	
Radical SAM

    





    

        Iprscan
        
	[SSF102114]
	
12

	
137

	
	
-

    




Show or not Suggestions
Suggest an annotation


Move your mouse over each field to get more informations


ID


DE


EC


GO


PM



CC


CL

 
  Your email  
 
  Validation code (copy this one TCnPmOJm)  
 
     



Show or not Access unfiltered results






    

       
            
                pubmed
            
        
	    
            
Set of Uniprot with relevant PubMed cross-references ncbi-blastp

        		
 	    
            N/A hits
        
    

    

        
            
                swiss-prot
            
        
	    
            
Swiss-Prot ncbi-blastp

        		
 	    
            N/A hits
        
    

    
    

        
            
                trembl
            
        
	    
            
TrEMBL ncbi-blastp

        		 	    
        
            N/A hits
        
    

    
    

        
            
                trembl
            
        
    	
            
Ralstonia solanacearum str.GMI1000 proteome ncbi-blastp

        		        
        
            N/A hits
        
    

        
    

        
            
                hamap
            
        
	
            
HAMAP scan

        		        
        
            N/A hits
        
    

    
    

	    
            
                Interpro Scan
            
            
	        
                
IprScan

            		        
            
                N/A hits