Ralstonia solanacearum sp.

4 hits

  1. RSc1319RSc1319Bifunctional UDP-4-keto-pentose/UDP-xylose synthase
  2. RSc1449queERSc14497-carboxy-7-deazaguanine synthase
  3. RSc2170prhLRSc2170Allophanate hydrolase subunit 2
  4. RSc2171prhKRSc2171Allophanate hydrolase subunit 1

RSc1319
RSc1318
RSc1318
Cluster
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Sequence
Codon
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Remora
Multalin
RSc1320
RSc1320
ID
AC NP_519440.1
LT RSc1319
SY RS02842
RX strain GMI1000
OR AL646052 from 1404147 to 1405202 on strand -
DE Bifunctional UDP-4-keto-pentose/UDP-xylose synthase
IP NAD-dependent epimerase/dehydratase;
CL II.B.2 lipopolysaccharides
EC
GO Biological Process: metabolic process (GO:0008152)
Biological Process: cellular metabolic process (GO:0044237)
Molecular Function: catalytic activity (GO:0003824)
Molecular Function: binding (GO:0005488)
Molecular Function: coenzyme binding (GO:0050662)
PM
AN
SQ 351 aa
 
........10........20........30........40........50
| | | | |
MKKVLILGVNGFIGHHLSKRILESTDPEISQWEVYGMDMQTERLGDLVNH
PRMHFFEGDITINKEWVEYHVRKCDVILPLVAIATPSTYVKAPLRVFELD
FEANLPIVRSAAKYGKHLVFPSTSEVYGMCGDDEFDPEASPLVYGPINKP
RWIYACSKQLMDRVIWGYGMEGLNFTLFRPFNWIGPGLDSIHTPKEGSSR
VVTQFLGHIVRGENIQLVDGGQQKRAFTYVDDGIDALVRIIANKDGVASG
KIYNIGNPSNNYSVRELAEMMLKKAGTIAEYKENAQKVKLVETTSGAYYG
KGYQDVQNRVPKIANTMEELGWKPTTTMEDTLANIFEAYREHAAEARSLV
D
Show or not Domain decomposition
 
pubmed

3

343

S=1001 I=55 E=1.14683e-112

Bifunctional polymyxin resistance protein arnA EC=2.1.2.n1 EC=1.1.1.n1 ; Antibiotic Lipid biosynthesis Lipopolysaccharide Methyltransferase Mult

Pubmed 15583148

 

prodomImg

pubmed

3

339

S=982 I=55 E=2.57584e-110

Bifunctional polymyxin resistance protein arnA EC=2.1.2.n1 EC=1.1.1.n1 ; Antibiotic Lipid biosynthesis Lipopolysaccharide Methyltransferase Multi

Pubmed 9570402

 

prodomImg

pubmed

3

339

S=970 I=53 E=7.45608e-109

Bifunctional polymyxin resistance protein arnA EC=2.1.2.n1 EC=1.1.1.n1 ; Antibiotic Lipid biosynthesis Lipopolysaccharide Methyltransferase Multi

Pubmed 11706007

 

prodomImg

pubmed

3

346

S=556 I=36 E=1.0495e-58

UDP-D-apiose/UDP-D-xylose synthase

Pubmed 16549428

 

prodomImg

pubmed

4

346

S=552 I=36 E=3.17591e-58

Putative dTDP-glucose 4-6-dehydratase (Putative uncharacterized protein) (UDP-D-apiose/UDP-D-xylose synthase) (At2g27860/F15K20.4)

Pubmed 12969423

 

prodomImg

pubmed

162

346

S=336 I=38 E=4.25357e-32

Nucleoside-diphopshate-sugar dehydratase

Pubmed 17041024

 

prodomImg

pubmed

1

342

S=294 I=29 E=5.50219e-27

Glucuronic acid decarboxylase

Pubmed 14528002,17918933

 

prodomImg

pubmed

3

342

S=293 I=28 E=6.84223e-27

Putative UDP-glucose 4-epimerase

Pubmed 16873021

 

prodomImg

pubmed

3

340

S=283 I=29 E=1.26963e-25

DTDP-glucose 4-6-dehydratase (UDP-glucuronic acid decarboxylase)

Pubmed 10048488

 

prodomImg

pubmed

1

341

S=273 I=27 E=1.79794e-24

dTDP-glucose 4,6-dehydratase EC=4.2.1.46 ; Lyase

Pubmed 18043661

 

prodomImg

sp_Pdown

A8GDR7|ARNA_SERP5

3

339

S=1016 I=54 E=1.13791e-114

Bifunctional polymyxin resistance protein arnA [Includes: UDP-4-amino-4-deoxy-L-arabinose formyltransferase - Serratia proteamaculans (strain 568)

sp_Pdown

Q7N3Q7|ARNA_PHOLL

2

345

S=1008 I=54 E=1.06036e-113

Bifunctional polymyxin resistance protein arnA [Includes: UDP-4-amino-4-deoxy-L-arabinose formyltransferase - Photorhabdus luminescens subsp. laumondii

sp_Pdown

A0KGY6|ARNA_AERHH

1

343

S=1007 I=55 E=1.36541e-113

Bifunctional polymyxin resistance protein arnA [Includes: UDP-4-amino-4-deoxy-L-arabinose formyltransferase - Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240)

sp_Pdown

A1JPN5|ARNA_YERE8

3

339

S=1003 I=55 E=5.04939e-113

Bifunctional polymyxin resistance protein arnA [Includes: UDP-4-amino-4-deoxy-L-arabinose formyltransferase - Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081)

sp_Pdown

A4TIM4|ARNA_YERPP

3

343

S=1002 I=55 E=5.80528e-113

Bifunctional polymyxin resistance protein arnA [Includes: UDP-4-amino-4-deoxy-L-arabinose formyltransferase - Yersinia pestis (strain Pestoides F)

trembl_Pdown

B2UAS2|B2UAS2_BURPI

1

351

S=1719 I=91 E=0

NAD-dependent epimerase/dehydratase - Ralstonia pickettii 12J

trembl_Pdown

A7CD54|A7CD54_BURPI

1

351

S=1719 I=91 E=0

NAD-dependent epimerase/dehydratase - Ralstonia pickettii 12D

trembl_Pdown

B1JTE2|B1JTE2_BURCC

2

351

S=1578 I=83 E=0

NAD-dependent epimerase/dehydratase - Burkholderia cenocepacia (strain MC0-3)

Iprscan IPR016040 [G3DSA:3.40.50.720]

2

285

NAD(P)-binding

Iprscan [PTHR10366]

6

347

-

Iprscan [PTHR10366:SF35]

301

347

-

Iprscan [PTHR10366:SF35]

6

285

-

Iprscan [PTHR10366:SF35]

6

347

-

Iprscan IPR001509 [PF01370]

4

256

NAD-dependent epimerase/dehydratase

Iprscan IPR016040 [SSF51735]

1

348

NAD(P)-binding

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ID
DE
EC
GO
PM
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CL
  Your email
  Validation code (copy this one m5jdNSe9)
   

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pubmed

Set of Uniprot with relevant PubMed cross-references ncbi-blastp

N/A hits
swiss-prot

Swiss-Prot ncbi-blastp

N/A hits
trembl

TrEMBL ncbi-blastp

N/A hits
trembl

Ralstonia solanacearum str.GMI1000 proteome ncbi-blastp

N/A hits
hamap

HAMAP scan

N/A hits
Interpro Scan

IprScan

N/A hits
queE RSc1449
RSc1448
RSc1448
Cluster
DrawMap
XML file

FASTA file
Extract
Sequence
Codon
Usage
Narcisse
StringString database Find Mutants

Find Clones
Remora
Multalin
RSc1450
RSc1450
ID queE
AC NP_519570.1
LT RSc1449
SY RS03858
RX strain GMI1000
OR AL646052 from 1551351 to 1551989 on strand +
DE 7-carboxy-7-deazaguanine synthase
IP Radical SAM
CL I.D.2 purine ribonucleotide biosynthesis
EC
GO Molecular Function: iron-sulfur cluster binding (GO:0051536)
Molecular Function: catalytic activity (GO:0003824)
PM
AN
SQ 212 aa
 
........10........20........30........40........50
| | | | |
MTYAVKEIFYTLQGEGANTGRAAVFCRFAGCNLWSGREADRAAAICQFCD
TDFVGTDGTLGGKYPTADALADTVAAQWPAAATGGRPLVVCTGGEPLLQL
DRPLIDALHARGFEIAIETNGTLAVPDGIDWVCVSPKMGAELVVTRGDEL
KVVIPQPGQDLDAYERLDFRHFFLQPMDGPLARRNTALAVELCQRRPRWH
LSLQTHKMLGIR
Show or not Domain decomposition
 
pubmed

2

125

S=147 I=36 E=1.87494e-09

Putative uncharacterized protein

Pubmed 8626299,8824639

 

prodomImg

pubmed

5

125

S=120 I=33 E=3.35425e-06

Putative organic radical activating enzyme

Pubmed 15793123

 

prodomImg

sp_Pdown

P45097|Y1189_HAEIN

2

212

S=212 I=31 E=1.51687e-17

Uncharacterized protein HI1189 - Haemophilus influenzae

sp_Pdown

P64556|YGCF_SHIFL

1

211

S=178 I=34 E=2.14268e-13

Uncharacterized protein ygcF - Shigella flexneri

sp_Pdown

P64554|YGCF_ECOLI

1

211

S=178 I=34 E=2.14268e-13

Uncharacterized protein ygcF - Escherichia coli (strain K12)

sp_Pdown

P64555|YGCF_ECO57

1

211

S=178 I=34 E=2.14268e-13

Uncharacterized protein ygcF - Escherichia coli O157:H7

trembl_Pdown

A7CJK7|A7CJK7_BURPI

1

212

S=1044 I=91 E=2.59543e-117

Putative uncharacterized protein - Ralstonia pickettii 12D

trembl_Pdown

B2UBF1|B2UBF1_BURPI

1

212

S=1044 I=91 E=2.71107e-117

Putative uncharacterized protein - Ralstonia pickettii 12J

trembl_Pdown

Q0KAE5|Q0KAE5_RALEH

1

212

S=943 I=83 E=5.07229e-105

Organic radical activating enzyme - Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) (Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337))

Iprscan IPR007197 [PF04055]

46

123

Radical SAM

Iprscan [SSF102114]

12

137

-

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ID
DE
EC
GO
PM
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CL
  Your email
  Validation code (copy this one L5861pL9)
   

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pubmed

Set of Uniprot with relevant PubMed cross-references ncbi-blastp

N/A hits
swiss-prot

Swiss-Prot ncbi-blastp

N/A hits
trembl

TrEMBL ncbi-blastp

N/A hits
trembl

Ralstonia solanacearum str.GMI1000 proteome ncbi-blastp

N/A hits
hamap

HAMAP scan

N/A hits
Interpro Scan

IprScan

N/A hits
prhL RSc2170
RSc2169
RSc2169
Cluster
DrawMap
XML file

FASTA file
Extract
Sequence
Codon
Usage
Narcisse
StringString database Find Mutants

Find Clones
Remora
Multalin
RSc2171
RSc2171
ID prhL
AC NP_520291.1
LT RSc2170
SY RS01429
RX strain GMI1000
OR AL646052 from 2352813 to 2353874 on strand -
DE Allophanate hydrolase subunit 2
IP Allophanate hydrolase subunit 2
CL I.I Degradation
EC
GO
PM
AN
SQ 353 aa
 
........10........20........30........40........50
| | | | |
MSRPTSRAAPALIEIVRAGVLTSVQDLGRTGYRRFGVCMSGALDPLSLYV
GNRLVGNRSDAAGIEFTLGHATLRFLADGLVALTGADCLATLDGAPVHAW
HAFPVQRGQTLTLRVAQGGVRAYLCVAGGIDVPEMMGSRATDLKAGFGGF
EGRPLRDGDRLAALPADRSHAPDVSGAAIGVKAPRWTFDRMRGELPVMRV
LPGPEYDDFLADSQAAFWESEWTLTPNSNRMGFRLQGPELVRRQLCSGDL
LSHGVVPGVIQVPPSGQPIVLMADAQTTGGYPKIGTVILADQWRLAQVPL
GTRIRFARATLEEAEAARADVSRYLQQIETALDWQRRGILSVARRTARTR
PMA
Show or not Domain decomposition
 
ralso

NP_522499.1 lcl|RSp0938

12

304

S=624 I=50 E=4.68437e-69

hypothetical protein

pubmed

24

328

S=557 I=43 E=7.08288e-59

Putative uncharacterized protein rni2

Pubmed 10722605

 

prodomImg

pubmed

13

300

S=450 I=38 E=6.76626e-46

Putative uncharacterized protein

Pubmed 9583950

 

prodomImg

pubmed

12

335

S=446 I=34 E=2.25365e-45

Urea amidolyase

Pubmed 10430560,11210495

 

prodomImg

pubmed

13

335

S=374 I=30 E=1.10386e-36

Allophanate hydrolase subunit 2

Pubmed 17636987

 

prodomImg

pubmed

10

304

S=348 I=34 E=1.5071e-33

Urea amidolyase EC=6.3.4.6 EC=3.5.1.54 ; Arginine metabolism ATP-binding Biotin Hydrolase Ligase Multifunctional enzyme Nucleotide-binding Pho

Pubmed 1802034

 

prodomImg

pubmed

13

334

S=323 I=29 E=2.02206e-30

KipI antagonist ; Sporulation

Pubmed 8574415,8969502

 

prodomImg

pubmed

13

304

S=283 I=34 E=1.15251e-25

Urea carboxylase homologue

Pubmed 15090492

 

prodomImg

pubmed

92

161

S=209 I=59 E=1.02131e-16

Amidolyase homolog

Pubmed 8855317

 

prodomImg

sp_Pdown

P75745|YBGK_ECOLI

12

328

S=697 I=49 E=5.87377e-76

Uncharacterized protein ybgK - Escherichia coli (strain K12)

sp_Pdown

P44298|Y1730_HAEIN

12

333

S=568 I=43 E=2.08974e-60

Uncharacterized protein HI1730 - Haemophilus influenzae

sp_Pdown

P32528|DUR1_YEAST

10

304

S=348 I=34 E=9.56918e-34

Urea amidolyase [Includes: Urea carboxylase - Saccharomyces cerevisiae (Baker's yeast)

sp_Pdown

Q7WY77|KIPA_BACSU

13

334

S=323 I=29 E=1.28389e-30

KipI antagonist - Bacillus subtilis

trembl_Pdown

B2U8X7|B2U8X7_BURPI

5

350

S=1472 I=81 E=8.89165e-169

Urea amidolyase related protein - Ralstonia pickettii 12J

trembl_Pdown

A7CME3|A7CME3_BURPI

12

350

S=1463 I=82 E=9.36135e-168

Urea amidolyase related protein - Ralstonia pickettii 12D

trembl_Pdown

Q477G3|Q477G3_RALEJ

12

353

S=1008 I=62 E=1.31219e-112

Allophanate hydrolase subunit 2 - Ralstonia eutropha (strain JMP134) (Alcaligenes eutrophus)

Iprscan [PTHR18866]

8

137

-

Iprscan [PTHR18866:SF14]

8

137

-

Iprscan IPR003778 [PF02626]

34

324

Allophanate hydrolase subunit 2

Iprscan IPR003778 [SM00797]

34

324

Allophanate hydrolase subunit 2

Iprscan IPR003778 [TIGR00724]

12

335

Allophanate hydrolase subunit 2

Iprscan [signalp]

1

18

-

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ID
DE
EC
GO
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  Validation code (copy this one 2TDwDiqA)
   

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pubmed

Set of Uniprot with relevant PubMed cross-references ncbi-blastp

N/A hits
swiss-prot

Swiss-Prot ncbi-blastp

N/A hits
trembl

TrEMBL ncbi-blastp

N/A hits
trembl

Ralstonia solanacearum str.GMI1000 proteome ncbi-blastp

N/A hits
hamap

HAMAP scan

N/A hits
Interpro Scan

IprScan

N/A hits
prhK RSc2171
RSc2170
RSc2170
Cluster
DrawMap
XML file

FASTA file
Extract
Sequence
Codon
Usage
Narcisse
StringString database Find Mutants

Find Clones
Remora
Multalin
RSc2172
RSc2172
ID prhK
AC NP_520292.1
LT RSc2171
SY RS01428
RX strain GMI1000
OR AL646052 from 2353871 to 2354518 on strand -
DE Allophanate hydrolase subunit 1
IP Conserved hypothetical protein CHP00370
CL I.I Degradation
EC
GO
PM
AN
SQ 215 aa
 
........10........20........30........40........50
| | | | |
MQCTIHRLGELALLCEVPPPATLTCQQRIWAMASRASEWAGVIDVVPGMN
NLTLVFGPQADAQALTALLREAWQESGALIADGKRIDIEVAYGGDDGPDL
RDVAAHTGLSPAEVVRRHTAPEYIVYFLGFLPGFAYMGGLDKSLATPRRA
EPRMAVPAGSVGIGGEQTGIYPAASPGGWQLLGRTDAALFLPQRDPPALL
APGDRIRFVASKVHA
Show or not Domain decomposition
 
ralso

NP_522500.1 lcl|RSp0939

4

213

S=490 I=47 E=5.15884e-53

hypothetical protein

pubmed

1

213

S=523 I=48 E=4.49396e-55

Putative uncharacterized protein rni1

Pubmed 10722605

 

prodomImg

pubmed

1

209

S=409 I=39 E=3.24517e-41

Kinase A inhibitor ; ATP-binding Nucleotide-binding Protein Sporulation

Pubmed 8574415,8969502

 

prodomImg

pubmed

38

209

S=399 I=46 E=6.18124e-40

Putative uncharacterized protein PF1273

Pubmed 10430560,11210495

 

prodomImg

pubmed

42

204

S=320 I=45 E=2.22954e-30

Putative uncharacterized protein

Pubmed 9583950

 

prodomImg

sp_Pdown

P0AAV4|YBGJ_ECOLI

6

212

S=566 I=53 E=1.90124e-60

Uncharacterized protein ybgJ - Escherichia coli (strain K12)

sp_Pdown

P0AAV5|YBGJ_ECO57

6

212

S=566 I=53 E=1.90124e-60

Uncharacterized protein ybgJ - Escherichia coli O157:H7

sp_Pdown

P44299|Y1731_HAEIN

8

214

S=489 I=45 E=4.02901e-51

Uncharacterized protein HI1731 - Haemophilus influenzae

sp_Pdown

P60495|KIPI_BACSU

1

209

S=409 I=39 E=2.0777e-41

Kinase A inhibitor - Bacillus subtilis

trembl_Pdown

B2U8X8|B2U8X8_BURPI

1

215

S=1022 I=90 E=1.12214e-114

Allophanate hydrolase subunit 1 - Ralstonia pickettii 12J

trembl_Pdown

A7CME4|A7CME4_BURPI

1

215

S=1016 I=89 E=5.88145e-114

Allophanate hydrolase subunit 1 - Ralstonia pickettii 12D

trembl_Pdown

Q477G4|Q477G4_RALEJ

2

215

S=769 I=68 E=5.63678e-84

Putative uncharacterized protein - Ralstonia eutropha (strain JMP134) (Alcaligenes eutrophus)

Iprscan IPR003833 [PF02682]

3

200

Allophanate hydrolase subunit 1

Iprscan IPR003833 [SM00796]

3

200

Allophanate hydrolase subunit 1

Iprscan IPR010016 [TIGR00370]

8

209

Conserved hypothetical protein CHP00370

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ID
DE
EC
GO
PM
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CL
  Your email
  Validation code (copy this one 2dBF1KAD)
   

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pubmed

Set of Uniprot with relevant PubMed cross-references ncbi-blastp

N/A hits
swiss-prot

Swiss-Prot ncbi-blastp

N/A hits
trembl

TrEMBL ncbi-blastp

N/A hits
trembl

Ralstonia solanacearum str.GMI1000 proteome ncbi-blastp

N/A hits
hamap

HAMAP scan

N/A hits
Interpro Scan

IprScan

N/A hits