CL
[1]Metabolism GO:0008152
[1.1]Carbon compound utilization
[1.1.1]Carbohydrates/Carbon compounds GO:0016052
[1.1.1.1]D-allose catabolism GO:0019316
[1.1.1.10]L-lyxose metabolism GO:0019324
[1.1.1.11]Fucose catabolism GO:0019317
[1.1.1.12]Galactitol catabolism GO:0019404
[1.1.1.13]Galactonate catabolism GO:0019584
[1.1.1.14]Lactose degradation GO:0005990
[1.1.1.15]Mannose catabolism GO:0019309
[1.1.1.16]Rhamnose catabolism GO:0019301
[1.1.1.17]Sorbitol degradation GO:0006062
[1.1.1.18]Trehalose degradation, low osmolarity+ GO:0005993
[1.1.1.19]Xylose catabolism GO:0042843
[1.1.1.2]2,5-ketogluconate metabolism GO:0019522
[1.1.1.20]Glycol degradation GO:0042846
[1.1.1.21]Mannitol degradation GO:0019592
[1.1.1.22]Ribose degradation GO:0019303
[1.1.1.23]Galactose degradation GO:0019388
[1.1.1.24]Sorbose degradation GO:0042848
[1.1.1.25]L-ascorbate degradation GO:0019854
[1.1.1.26]2-O-alpha-mannosyl-D-glycerate degradation
[1.1.1.27]Trehalose degradation, high osmolarity
[1.1.1.28]L-galactonate catabolism
[1.1.1.29]Malate utilization
[1.1.1.3]D-arabinose catabolism GO:0019571
[1.1.1.4]D-galactarate catabolism GO:0019582
[1.1.1.5]D- galacturonate catabolism GO:0019698
[1.1.1.6]D-glucarate catabolism GO:0042838
[1.1.1.7]D-glucuronate catabolism GO:0042840
[1.1.1.8]L-arabinose catabolism GO:0019572
[1.1.1.9]L-idonate catabolism GO:0046183
[1.1.2]Fatty acids (fatty acid oxidation) GO:0019395
[1.1.2.1]Degradation of short-chain fatty acids GO:0019626
[1.1.2.2]3-phenylpropionate and 3-(3-hydroxyphenyl)propionate degradation GO:0019380 GO:0019622
[1.1.2.3]Propionate degradation GO:0019543
[1.1.2.4]Anaerobic fatty acid oxidation pathway
[1.1.2.5]Propionyl-CoA (methylmalonyl pathway)
[1.1.2.6]Aerobic fatty acid oxidation pathway
[1.1.2.7]Acetoacetate degradation
[1.1.3]Amino acids GO:0009063
[1.1.3.1]L-alanine degradation GO:0006524
[1.1.3.10]Lysine cleavage GO:0006554
[1.1.3.11]Histidine degradation GO:0006548
[1.1.3.12]Leucine degradation GO:0006552
[1.1.3.13]Methionine degradation GO:0009087
[1.1.3.14]Valine degradation GO:0006574
[1.1.3.15]Phenylalanine, tyrosine degradation GO:0006559 GO:0006572
[1.1.3.16]Glutamine
[1.1.3.17]Taurine
[1.1.3.18]Arginine degradation III (agmatinase pathway)
[1.1.3.19]Aspartate degradation
[1.1.3.2]L-serine degradation GO:0006565
[1.1.3.20]Isoleucine degradation
[1.1.3.3]Arginine catabolism GO:0006527
[1.1.3.4]Glutamate degradation GO:0006538
[1.1.3.5]Glycine cleavage GO:0019464
[1.1.3.6]Proline utilization GO:0006562
[1.1.3.7]Threonine catabolism GO:0006567
[1.1.3.8]Tryptophan utilization GO:0006569
[1.1.3.9]L-cysteine catabolism GO:0019448
[1.1.4]Amines GO:0009310
[1.1.4.1]Phenylethylamine degradation GO:0019607
[1.1.4.2]Carnitine degradation GO:0042413
[1.1.4.3]Ornithine degradation GO:0006593
[1.1.5]Others
[1.1.5.1]Phenylacetic acid degradation GO:0010124
[1.1.5.2]Ethanol degradation GO:0006068
[1.1.5.3]Eugenol catabolism GO:0042856
[1.1.5.4]Beta-ketoadipate pathway GO:0042952
[1.1.5.5]Mandelate catabolism GO:0019596
[1.1.5.6](deoxy)ribose phosphate degradation
[1.1.5.7]Formaldehyde degradation
[1.2]Macromolecule degradation GO:0009057
[1.2.1]RNA GO:0006401
[1.2.2]DNA GO:0006308
[1.2.3]Proteins/peptides/glycopeptides GO:0006508 GO:0009050
[1.2.4]Polysaccharides GO:0000272
[1.2.4.1]Glycogen catabolism GO:0005980
[1.2.4.2]Chitin catabolism GO:0006032
[1.3]Energy metabolism (carbon) GO:0015980
[1.3.1]Glycolysis GO:0006096
[1.3.10]Formate oxidation
[1.3.11]Acyclic isoprenoid degradation
[1.3.2]Pentose phosphate shunt, oxidative branch GO:0009051
[1.3.3]Pyruvate dehydrogenase GO:0006086
[1.3.4]Tricarboxylic acid cycle GO:0006099
[1.3.5]Fermentation GO:0006113
[1.3.6]Aerobic respiration GO:0009060
[1.3.7]Anaerobic respiration GO:0009061
[1.3.8]ATP proton motive force interconversion GO:0015986
[1.3.9]Entner-Doudoroff pathway GO:0009255
[1.4]Energy production/transport
[1.4.1]Electron donor GO:0009053
[1.4.2]Electron acceptor GO:0009054
[1.4.3]Electron carrier GO:0009055
[1.5]Building block biosynthesis
[1.5.1]Amino acids GO:0008652
[1.5.1.1]Glutamate GO:0006537
[1.5.1.10]Glycine GO:0006545
[1.5.1.11]Serine GO:0006564
[1.5.1.12]Cysteine GO:0019344
[1.5.1.13]Phenylalanine GO:0009094
[1.5.1.14]Tyrosine GO:0006571
[1.5.1.15]Tryptophan GO:0000162
[1.5.1.16]Histidine GO:0000105
[1.5.1.17]Alanine GO:0006523
[1.5.1.18]Isoleucine/valine GO:0009097 GO:0009099
[1.5.1.19]Leucine GO:0009098
[1.5.1.2]Glutamine GO:0006542
[1.5.1.20]Chorismate GO:0009423
[1.5.1.21]Homoserine GO:0009090
[1.5.1.22]Ornithine
[1.5.1.23]Selenocysteine
[1.5.1.24]Glutamate biosynthesis I
[1.5.1.25]Alanine biosynthesis III
[1.5.1.3]Arginine GO:0006526
[1.5.1.4]Proline GO:0006561
[1.5.1.5]Aspartate GO:0006532
[1.5.1.6]Asparagine GO:0006529
[1.5.1.7]Lysine, diaminopimelate GO:0009089
[1.5.1.8]Threonine GO:0009088
[1.5.1.9]Methionine GO:0009086
[1.5.2]Nucleotide GO:0009165
[1.5.2.1]Purine biosynthesis GO:0006164
[1.5.2.2]Pyrimidine biosynthesis GO:0006221
[1.5.2.3]Purine ribonucleotide biosynthesis GO:0009152
[1.5.2.4]Pyrimidine ribonucleotide/ribonucleoside biosynthesis GO:0009220 GO:0042455
[1.5.3]Cofactor, small molecule carrier GO:0009108 GO:0051191
[1.5.3.10]Glutathione GO:0006750
[1.5.3.11]Menaquinone (MK), ubiquinone (Q) GO:0009234 GO:0006744
[1.5.3.12]Heme, porphyrin GO:0006783 GO:0006779
[1.5.3.13]Cobalamin (Vitamin B12) GO:0009236
[1.5.3.14]Enterochelin (enterobactin) GO:0009239
[1.5.3.15]Chrysobactin GO:0042858
[1.5.3.16]Achromobactin GO:0042861
[1.5.3.19]Isoprenoid biosynthesis GO:0008299
[1.5.3.1Biotin GO:0009102]1.5.3.1Biotin GO:0009102
[1.5.3.2]Folic acid GO:0046656
[1.5.3.20]Tetrahydrobiopterin biosynthesis GO:0006729
[1.5.3.21]Pyochelin biosynthesis GO:0042864
[1.5.3.22]Glutathione redox reactions
[1.5.3.23]Pantothenate biosynthesis I
[1.5.3.24]Folate polyglutamylation
[1.5.3.3]Lipoate GO:0009107
[1.5.3.4]Molybdenum (molybdopterin) GO:0006777
[1.5.3.5]Coenzyme A GO:0015937
[1.5.3.6]Pyridoxine (vitamin B6) GO:0008615
[1.5.3.7]Nicotinamide adenine dinucleotide (NAD) GO:0009435
[1.5.3.8]Thiamine (Vitamin B1) GO:0009228
[1.5.3.9]Riboflavin (Vitamin B2), FAD, FMN GO:0009231 GO:0006747 GO:0009398
[1.5.4]Fatty acid and phosphatidic acid GO:0006633 GO:0006654
[1.5.4.1]Fatty acid elongation - unsaturated
[1.5.4.2]Fatty acid elongation - saturated
[1.5.4.3]Fatty acid biosynthesis -- initial steps
[1.6]Macromolecules (cellular constituent) biosynthesis GO:0009059
[1.6.1]Phospholipid GO:0008654
[1.6.1.1]Cyclopropane fatty acid (CFA) biosynthesis
[1.6.1.2]Phospholipid biosynthesis I
[1.6.10]Lipoprotein GO:0042158
[1.6.11]Glycoprotein GO:0009101
[1.6.12]Flagella GO:0009296
[1.6.13]Fimbria, pili, curli GO:0009297
[1.6.15]Large molecule carriers GO:0006412
[1.6.15.1]Cytochromes GO:0017004
[1.6.15.2]Thioredoxin, glutaredoxin GO:0042964 GO:0042965
[1.6.15.3]Biotin carboxyl carrier protein GO:0042966
[1.6.15.4]Acyl carrier protein GO:0042967
[1.6.16]Cellulose biosynthesis GO:0030244
[1.6.17]GDP-mannose metabolism
[1.6.18]Siderophore
[1.6.2]Colanic acid (M antigen) GO:0009242
[1.6.3]Lipopolysaccharide GO:0009103
[1.6.3.1]antigen GO:0009243
[1.6.3.2]Core region GO:0009244
[1.6.3.3]Lipid A GO:0009245
[1.6.4]Enterobacterial common antigen (surface glycolipid) GO:0009246
[1.6.5]K antigen GO:0009248
[1.6.6]Osmoregulated periplasmic glucan GO:0009250
[1.6.7]Peptidoglycan (murein) GO:0009252
[1.6.9]Polysaccharides, cytoplasmic GO:0000271
[1.7]Central intermediary metabolism
[1.7.1]Unassigned reversible reactions
[1.7.10]Sugar nucleotide biosynthesis, conversions GO:0009226
[1.7.12]Amino sugar conversions GO:0046349
[1.7.13]Amino acid conversion GO:0006520
[1.7.14]Polyamine biosynthesis GO:0006596
[1.7.14.1]Putrescine biosynthesis I
[1.7.14.2]Putrescine biosynthesis III
[1.7.14.3]Spermidine biosynthesis
[1.7.15]2'-deoxyribonucleotide/ribonucleoside metabolism GO:0009265
[1.7.17]Formyl-tetrahydrofolate biosynthesis GO:0009257
[1.7.18]Betaine biosynthesis GO:0006578
[1.7.19]Incorporation of metal ions
[1.7.2]Glyoxylate bypass GO:0006097
[1.7.20]S-adenosyl methionine biosynthesis GO:0006556
[1.7.21]Glyoxylate degradation GO:0009436
[1.7.22]Carnitine metabolism GO:0042413
[1.7.23]Methylglyoxal metabolism GO:0009438
[1.7.24]Cyanate catabolism GO:0009440
[1.7.25]Glycolate metabolism GO:0009441
[1.7.26]Allantoin assimilation GO:0009442
[1.7.27]Pyridoxal 5'-phosphate salvage GO:0009443
[1.7.28]Pyruvate catabolism GO:0042867
[1.7.29]Acetate catabolism GO:0045733
[1.7.3]Pentose phosphate shunt, non-oxidative branch GO:0009052
[1.7.31]Aminobutyrate catabolism GO:0009450
[1.7.32]Putrescine catabolism GO:0009447
[1.7.32.1]Putrescine degradation I
[1.7.32.2]Putrescine degradation II
[1.7.33]Nucleotide and nucleoside conversions GO:0015949
[1.7.33.1]Salvage pathways of adenine, hypoxanthine, and their nucleosides
[1.7.33.2]Salvage pathways of guanine, xanthine, and their nucleosides
[1.7.33.3]Salvage pathways of pyrimidine deoxyribonucleotides
[1.7.33.4]Salvage pathways of pyrimidine ribonucleotides
[1.7.34]Peptidoglycan (murein) turnover, recycling GO:0000270
[1.7.35]Lactate oxidation GO:0019516
[1.7.36]Trehalose biosynthesis GO:0005992
[1.7.37]C1 assimilation, serine pathway GO:0019496
[1.7.38]Methionine salvage pathway GO:0019509
[1.7.39]Conversion of succinate to propionate
[1.7.40]Fructoselysine and psicoselysine degradation
[1.7.41]PRPP biosynthesis I
[1.7.42]PRPP biosynthesis II
[1.7.43]ppGpp biosynthesis
[1.7.44]NAD phosphorylation and dephosphorylation
[1.7.45]Pyridine nucleotide cycling
[1.7.46]Pyridine nucleotide synthesis
[1.7.6]Glycerol metabolism GO:0006071
[1.7.6.1]Glycerol degradation I
[1.7.6.2]Glycerol degradation II
[1.7.7]Galactose metabolism GO:0006012
[1.7.8]Gluconeogenesis GO:0006094
[1.7.9]Misc. glucose metabolism GO:0006006
[1.8]Metabolism of other compounds
[1.8.1]Phosphorous metabolism GO:0006793
[1.8.2]Sulfur metabolism GO:0006790
[1.8.2.1]Sulfate assimilation
[1.8.3]Nitrogen metabolism GO:0006807
[10]cryptic genes
[10.1]Partial similarity
[10.2]Conserved hypothetical protein
[2]Information transfer
[2.1]DNA related GO:0006259
[2.1.1]DNA replication GO:0006261
[2.1.2]DNA restriction/modification GO:0006304 GO:0009307
[2.1.3]DNA recombination GO:0006310
[2.1.4]DNA repair GO:0006281
[2.1.5]DNA degradation GO:0006308
[2.2]RNA related GO:0016070
[2.2.2]Transcription related GO:0006350
[2.2.3]RNA modification GO:0009451
[2.2.4]RNA degradation GO:0006401
[2.2.5]tRNA GO:0006399
[2.2.6]rRNA, stable RNA GO:0016072
[2.2.7]Antisense RNA GO:0042868
[2.3]Protein related GO:0006412
[2.3.1]Amino acid-activation GO:0006418
[2.3.2]Translation GO:0006412
[2.3.3]Posttranslational modification GO:0006464
[2.3.4]Chaperoning, folding GO:0006457
[2.3.5]Export, signal peptide cleavage GO:0006605 GO:0006886 GO:0016485
[2.3.6]Turnover, degradation GO:0006508
[2.3.7]Nucleoproteins, basic proteins
[2.3.8]Ribosomal proteins GO:0003735
[2.3.9]Non-ribosomal peptide synthetase GO:0019184
[3]Regulation GO:0050789
[3.1]Type of regulation
[3.1.1]DNA structure level
[3.1.1.1]DNA bending, supercoiling, inversion GO:0008301 GO:0003916
[3.1.1.2]Methylation GO:0006306
[3.1.2]Transcriptional level GO:0006355
[3.1.2.1]Sigma factors, anti-sigmafactors GO:0016987 GO:0016989
[3.1.2.2]Activator GO:0016563
[3.1.2.3]Repressor GO:0016564
[3.1.2.4]Complex regulation
[3.1.2.4.1]More than one signal needed
[3.1.2.4.2]Regulons or multilayer component regulatory systems
[3.1.2.4.3]Two-component regulatory systems (external signal) GO:0000155 GO:0000156
[3.1.2.4.4]Quorum sensing GO:0009370 GO:0009369 GO:0009372
[3.1.2.5]Action unknown
[3.1.3]Posttranscriptional
[3.1.3.1]Translation attenuation and efficiency GO:0009386
[3.1.3.2]Covalent modification, demodification, maturation GO:0006464 GO:0016485
[3.1.3.3]Inhibition / activation of enzymes GO:0004857 GO:0008047
[3.1.3.4]Proteases, cleavage of compounds GO:0008233
[3.1.3.5]Multilayer regulatory systems
[3.1.3.6]Antisense RNA GO:0016246
[3.1.3.7]binding, sequestering
[3.1.4]Regulation level unknown
[3.3]Genetic unit regulated
[3.3.1]Operon (regulation of one operon)
[3.3.2]Regulon (a network of operons encoding related functions)
[3.3.3]Stimulon (ie. environmental stimulus)
[3.3.4]Global
[3.4]Trigger (some information added)
[3.5]Trigger modulation (some information added)
[4] Transport GO:0005215 GO:0006810
[4.1]Channel-type Transporters GO:0015267
[4.1.A]alpha-type channels
[4.1.A.1]The Voltage-gated Ion Channel (VIC) Superfamily GO:0005244
[4.1.A.11]The Chloride Channel (ClC) Family
[4.1.A.22]The Large Conductance Mechanosensitive Ion Channel (MscL) Family
[4.1.A.23]The Small Conductance Mechanosensitive Ion Channel (MscS) Family
[4.1.A.46] The H+- or Na+-translocating Bacterial Flagellar Motor (Mot) Family
[4.1.A.8]The Major Intrinsic Protein (MIP) Family
[4.1.B]Beta barrel porins (The Outer Membrane Porin (OMP) Functional Superfamily)
[4.1.B.1]The General Bacterial Porin (GBP) Family
[4.1.B.10]The Nucleoside-specific Channel-forming Outer Membrane Porin (Tsx) Family
[4.1.B.14]The Outer Membrane Receptor (OMR) Family
[4.1.B.17]The Outer Membrane Factor (OMF) Family
[4.1.B.21]The OmpG Porin (OmpG) Family
[4.1.B.3]The Sugar Porin (SP) Family
[4.1.B.9]The FadL Outer Membrane Protein (FadL) Family
[4.2] Electrochemical potential driven transporters GO:0015290
[4.2.A]Porters (Uni-, Sym- and Antiporters) GO:0015293 GO:0015297 GO:0015292
[4.2.A.1]The Major Facilitator Superfamily (MFS)
[4.2.A.10]The 2-Keto-3-Deoxygluconate Transporter (KDGT) Family
[4.2.A.13]The C4-Dicarboxylate Uptake (Dcu) Family
[4.2.A.14]The Lactate Permease (LctP) Family
[4.2.A.15]The Betaine/Carnitine/Choline Transporter (BCCT) Family
[4.2.A.16]The Telurite-resistance/Dicarboxylate Transporter (TDT) Family
[4.2.A.17]The Proton-dependent Oligopeptide Transporter (POT) Family
[4.2.A.19]The Ca2+:Cation Antiporter (CaCA) Family
[4.2.A.2]The Glycoside-Pentoside-Hexuronide (GPH):Cation Symporter Family
[4.2.A.20]The Inorganic Phosphate Transporter (PiT) Family
[4.2.A.21]The Solute:Sodium Symporter (SSS) Family
[4.2.A.23]The Dicarboxylate/Amino Acid:Cation (Na+ or H+) Symporter (DAACS) Family
[4.2.A.25]The Alanine/Glycine:Cation symporter (AGCS) Family
[4.2.A.26]The Branched Chain Amino Acid:Cation Symporter (LIVCS) Family
[4.2.A.27]The Glutamate:Na+ Symporter (GltS) Family
[4.2.A.3]The Amino Acid-Polyamine-Choline (APC) Family
[4.2.A.33]The NhaA Na+:H+ Antiporter (NhaA) Family
[4.2.A.34]The NhaB Na+:H+ Antiporter (NhaB) Family
[4.2.A.36]The Monovalent Cation:Proton Antiporter-1 (CPA1) Family
[4.2.A.37]The Monovalent Cation:Proton Antiporter-2 (CPA2) Family
[4.2.A.38]The K+ Transporter (Trk) Family
[4.2.A.39]The Nucleobase:Cation Symporter-1 (NCS1) Family
[4.2.A.4]The Cation Diffusion Facilitator (CDF) Family
[4.2.A.40]The Nucleobase:Cation Symporter-2 (NCS2) Family
[4.2.A.41]The Concentrative Nucleoside Transporter (CNT) Family
[4.2.A.42]The Hydroxy/Aromatic Amino Acid Permease (HAAAP) Family
[4.2.A.44]The Formate-Nitrite Transporter (FNT) Family
[4.2.A.45]The Metal Ion Transporter (MIT) Family
[4.2.A.47]The Divalent Anion:Na+ Symporter (DASS) Family
[4.2.A.49]The Ammonium Transporter (Amt) Family
[4.2.A.53]The Sulfate Permease (SulP) Family
[4.2.A.55]The Manganese (Nramp) Fam.
[4.2.A.58]The Phosphate:Na+ Symporter (PNaS) Family
[4.2.A.6]The Resistance-Nodulation-Cell Division (RND) Superfamily
[4.2.A.61]The C4-dicarboxylate Uptake C (DcuC) Family
[4.2.A.64]The Type V Secretory Pathway or Twin Arginine Targeting (Tat) Family
[4.2.A.66]The Multi Antimicrobial Extrusion (MATE) Family
[4.2.A.68]The p-Aminobenzoyl-glutamate Transporter (AbgT) Family
[4.2.A.69]The Auxin Efflux Carrier (AEC) Family
[4.2.A.7]The Drug/Metabolite Transporter (DMT) Superfamily
[4.2.A.72]The K+ uptake permease (KUP) family
[4.2.A.75]The L-lysine exporter (LysE) family
[4.2.A.76]The Resistance to Homoserine/Threonine (RhtB) Family
[4.2.A.8]The Gluconate:H+ Symporter (GntP) Family
[4.2.A.9]The Cytochrome oxidase biogenesis (Oxa1) Family
[4.2.C]Ion-gradient driven energizers GO:0015404
[4.2.C.1]TonB Family of Auxiliary Proteins for Energization of OMR-mediated Transport
[4.3]Primary Active Transporters GO:0015291
[4.3.A]Pyrophosphate Bond (ATP; GTP; P2) Hydrolysis-driven Active Transporters GO:0016887
[4.3.A.1]The ATP-binding Cassette (ABC) Superfamily + ABC-type Uptake Permeases GO:0042626
[4.3.A.1.a]ATP binding component
[4.3.A.1.am]ATP binding and membrane component
[4.3.A.1.m]membrane component
[4.3.A.1.p]periplasmic binding component
[4.3.A.2]The H+/Na+-translocating F-, V- and A-type ATPase (F-ATPase) Superfamily GO:0045256 GO:0016471
[4.3.A.3]The P-type ATPase (P-ATPase) Superfamily GO:0015662
[4.3.A.4]The Arsenite-Antimonite (Ars) Efflux Family GO:0015446 GO:0042961 GO:0015699 GO:0015700
[4.3.A.5]The Type II (General) Secretory Pathway (IISP) Family GO:0015628 GO:0015447
[4.3.A.6]The Type III (Virulence-related) Secretory Pathway (IIISP) Family GO:0030254 GO:0015448
[4.3.A.7]The Type IV (Conjugal DNA-Protein Transfer) Secretory Pathway (IVSP) Family GO:0030255 GO:0015449
[4.3.D]Oxidoreduction-driven Active Transporters GO:0015453
[4.3.D.1]The Proton- or sodium ion-translocating NADH Dehydrogenase (NDH) Family
[4.3.D.4]The Proton-translocating Cytochrome Oxidase (COX) Superfamily
[4.4]Group Translocators GO:0015455
[4.4.A]Phosphotransferase Systems (PEP-dependent PTS) GO:0009401
[4.4.A.1]The PTS Glucose-Glucoside (Glc) Family
[4.4.A.2]The PTS Fructose-Mannitol (Fru) Family
[4.4.A.3]The PTS Lactose-N,N'-Diacetylchitobiose-betaucoside (Lac) Family
[4.4.A.4]The PTS Glucitol (Gut) Family
[4.4.A.5]The PTS Galactitol (Gat) Family
[4.4.A.6]The PTS Mannose-Fructose-Sorbose (Man) Family
[4.8.A]Accessory Factors Involved in Transport
[4.8.A.1]The Membrane Fusion Protein (MFP) Family
[4.8.A.2]The Secretin Auxiliary Lipoprotein (SAL) Family
[4.8.A.3]MPA1 Family auxillary transport protein
[4.8.A.7]The Phosphotransferase System Enzyme I (EI) Family
[4.8.A.8]The Phosphotransferase System HPr (HPr) Family
[4.9.A]Recognized transporters of unknown biochemical mechanism GO:0005215 GO:0006810GO:0005215 GO:0006810
[4.9.A.1]The Polysaccharide Transporter (PST) Family GO:0015159 GO:0015774
[4.9.A.13]The Short Chain Fatty Acid Transporter (scFAT) Family GO:0015635 GO:0015912
[4.9.A.16]The Septal DNA Translocator (SDT) Family
[4.9.A.17]The Metal Ion Transporter (MIT) Family GO:0046873 GO:0030001
[4.9.A.4]The Nicotinamide Mononucleotide (NMN) Uptake Permease (PnuC) Family GO:0015663 GO:0015890
[4.9.A.8]The Ferrous Iron Uptake (FeoB) Family GO:0015093 GO:0015684
[4.9.B]Putative uncharacterized transport protein GO:0005215 GO:0006810
[4.9.B.10]The 6TMS Putative MarC Transporter (MarC) Family
[4.9.B.18]The SecDF-associated Single Transmembrane Protein (SSTP) Family
[4.9.B.21]The Frataxin (Frataxin) Family
[4.9.B.22]The Putative Permease (PerM) Family
[4.9.B.24]The Testis-Enhanced Gene Transfer (TEGT) Family
[4.9.B.25]The YbbM (YbbM) Family
[4.9.B.27]The YdjX-Z (YdjX-Z) Family
[4.9.B.28]The YqaE (YqaE) Family
[4.9.B.29]The YebN (YebN) Family
[4.9.B.3]The Putative Bacterial Murein Precursor Exporter (MPE) Family
[4.9.B.31]The YqiH (YqiH) Family
[4.9.B.32]The Putative Vectorial Glycosyl Polymerization (VGP) Family
[4.9.B.4] The Putative Efflux Transporter (PET) Family
[4.9.B.6]The Toxic Hok/Gef Protein (Hok/Gef) Family
[4.S]substrate GO:0005215 GO:0006810
[4.S.1](D)-galactarate GO:0042871 GO:0042877 GO:0042878
[4.S.10]allose/ribose GO:0015754 GO:0015752 GO:0015593 GO:0015591
[4.S.100]L-arabinose GO:0042882 GO:0015147
[4.S.101]L-arabinose /H+ GO:0015518
[4.S.102]L-arabinose/ isopropyl-beta-D-thiogalactopyranoside GO:0015147
[4.S.103]L-asparagine GO:0006867 GO:0015182
[4.S.104]lipooligosaccharides GO:0015920 GO:0015221
[4.S.105]lipopolysaccharide GO:0015920 GO:0015221
[4.S.106]lipoprotein GO:0042953 GO:0042954
[4.S.107]L-lactate GO:0015727 GO:0015129
[4.S.108]L-leucine/L-valine/L-iso-leucine GO:0015818 GO:0015820 GO:0015829 GO:0015188 GO:0005304 GO:0015190
[4.S.109]L-rhamnose/H+ GO:0015762 GO:0015153
[4.S.11]alpha-ketoglutarate GO:0015742 GO:0015139
[4.S.110]L-threonine/L-serine GO:0015826 GO:0015825 GO:0015195 GO:0015194
[4.S.111]lysine GO:0015819 GO:0015189
[4.S.112]lysine/arginine/ornithine GO:0015819 GO:0015189 GO:0015809 GO:0015181 GO:0000064 GO:0015822
[4.S.113]maltose GO:0005363 GO:0015768
[4.S.114]maltose/maltodextrin GO:0042956 GO:0042958 GO:0005363 GO:0015768
[4.S.115]mannitol GO:0015797 GO:0015575
[4.S.116]mannose GO:0015761 GO:0015578
[4.S.117]melibiose GO:0015156 GO:0015769
[4.S.118]methionine GO:0015821 GO:0015191
[4.S.119]methylgalactoside/galactose GO:0005354 GO:0005354 GO:0015592 GO:0015765
[4.S.12]amino acid GO:0015171 GO:0006865
[4.S.120]Mg++ GO:0015693 GO:0015095
[4.S.121]Mg2+/Ni2+/Co2+ GO:0015675 GO:0006824 GO:0015693 GO:0015099 GO:0015087 GO:0015095
[4.S.122]microcin B17 GO:0015638 GO:0042885
[4.S.123]Mn+/H+ GO:0005384 GO:0006828
[4.S.124]molybdate GO:0015689 GO:0015098
[4.S.125]molybdenum GO:0042888
[4.S.126]multidrug GO:0015239 GO:0006855
[4.S.127]multidrug/bicyclomycin GO:0015905 GO:0015545
[4.S.128]muropeptide GO:0015640 GO:0015834
[4.S.129]myo-inositol GO:0015798 GO:0005365
[4.S.13]amino acid/amide GO:0042886
[4.S.130]Na+ GO:0015081 GO:0006814
[4.S.131]Na+/ alanine/glycine GO:0015808 GO:0015816 GO:0015180 GO:0015187
[4.S.132]Na+/ H+ GO:0015385
[4.S.133]Na+/Ca+ GO:0005432
[4.S.134]Na+/dicarboxylate GO:0017153
[4.S.135]Na+/glutamate/aspartate GO:0015813 GO:0015810 GO:0015183 GO:0005313
[4.S.136]Na+/H+ GO:0015385
[4.S.137]Na+/leucine/valine/iso-leucine GO:0015818 GO:0015820 GO:0015829 GO:0015188 GO:0015190
[4.S.138]Na+/pantothenate GO:0015887 GO:0015498
[4.S.139]Na+/proline GO:0005298
[4.S.14]ammonium GO:0015696 GO:0008519
[4.S.140]Na+/serine/threonine GO:0015826 GO:0015825 GO:0015195 GO:0015194
[4.S.141]N-acetylgalactosamine GO:0015763 GO:0015571
[4.S.142]N-acetylglucosamine GO:0015764 GO:0015572
[4.S.143]Ni++ GO:0015675 GO:0015099
[4.S.144]nicotinamide mononucleotide GO:0015890 GO:0015663
[4.S.145]nitrite GO:0015707 GO:0015113
[4.S.146]nucleoside GO:0015858 GO:0005337 GO:0015858
[4.S.147]nucleoside/H+ GO:0015858 GO:0005337 GO:0015858
[4.S.148]oligopeptide GO:0006857 GO:0015198
[4.S.15]antibiotic GO:0042891 GO:0042895
[4.S.150]p-aminobenzoyl-glutamate GO:0015814 GO:0015569
[4.S.151]Pb/Cd/Zn/Hg GO:0015692 GO:0015094 GO:0006829 GO:0005385 GO:0015691 GO:0015086 GO:0006829 GO:0005385 GO:0015694 GO:0015097
[4.S.152]peptide GO:0015833 GO:0015197
[4.S.153]phenylalanine GO:0015823 GO:0015192
[4.S.154]phenylalanine/ tyrosine GO:0015801 GO:0015173
[4.S.155]phosphate GO:0006817 GO:0015114
[4.S.156]polymyxin GO:0042893 GO:0042897
[4.S.158]proline GO:0015824 GO:0015193
[4.S.159]proline/betaine GO:0015838 GO:0015824 GO:0015187 GO:0015199
[4.S.16]arabinose polymer GO:0042899 GO:0042900
[4.S.160]protein GO:0015031 GO:0008565
[4.S.161]protein/DNA GO:0015869 GO:0015219
[4.S.162]purine/xanthine GO:0006863 GO:0005345
[4.S.163]putrescine GO:0015847
[4.S.164]putrescine/ornithine GO:0015496
[4.S.166]putrescine/spermidine GO:0015847 GO:0015848 GO:0015606 GO:0015489
[4.S.167]serine GO:0015825 GO:0015194
[4.S.168]shikimate/dehydroshikimate GO:0015530 GO:0015733
[4.S.169]sialic acid GO:0015739 GO:0015136
[4.S.17]arginine GO:0015809 GO:0015181
[4.S.170]S-methylmethionine GO:0015806 GO:0000100
[4.S.172]sucrose GO:0008515 GO:0015770
[4.S.173]sugar GO:0008643 GO:0015144
[4.S.174]sulfate GO:0008272 GO:0015116
[4.S.175]taurine GO:0015734 GO:0005368
[4.S.176]tellurite GO:0015710 GO:0015118
[4.S.177]thiamine GO:0015888 GO:0015234
[4.S.178]thiosulfate GO:0015709 GO:0008272 GO:0015117
[4.S.179]thiosulfate/sulfate GO:0015419
[4.S.18]arginine/ornithine GO:0015822 GO:0015809
[4.S.180]threonine GO:0015826 GO:0015195
[4.S.181]trehalose GO:0015771 GO:0015574
[4.S.182]tripeptide GO:0042939 GO:0042937
[4.S.183]tryptophan GO:0015827 GO:0015196
[4.S.184]tyrosine GO:0015828 GO:0005302
[4.S.185]uracil GO:0015857 GO:0015210
[4.S.187]vitamin B12 GO:0015889 GO:0015235
[4.S.188]water GO:0006833 GO:0005372
[4.S.189]xanthosine GO:0015863 GO:0015553
[4.S.19]arsenite GO:0015700 GO:0015105
[4.S.190]xylose/H+ GO:0015753
[4.S.191]Zn GO:0006829 GO:0005385
[4.S.192]chrysobactin GO:0042932 GO:0042933
[4.S.193]achromobactin GO:0042935 GO:0042934
[4.S.194]acetate
[4.S.195]2-O-alpha-mannosyl-D-glycerate
[4.S.196]Zn(2+)
[4.S.197]N-acetylmuramic acid (MurNAc)
[4.S.2]2-keto-3-deoxy-D-gluconate GO:0046411 GO:0015649
[4.S.20]benzoate GO:0042919 GO:0042925
[4.S.21]lactose/glucose GO:0005355 GO:0015155
[4.S.22]beta-glucoside GO:0015759 GO:0015573
[4.S.25]Ca+/ H+ GO:0006816 GO:0015369
[4.S.26]cadaverine/lysine GO:0015819 GO:0015839 GO:0015497
[4.S.27]carnitine GO:0015879 GO:0015226
[4.S.28]cation GO:0006812 GO:0008324
[4.S.29]cellobiose/arbutin/salicin GO:0042948 GO:0042950 GO:0019533 GO:0019191 GO:0042950 GO:0042950
[4.S.3]3-hydroxyphenylpropionic acid GO:0042920 GO:0042926
[4.S.31]chloramphenicol GO:0042892
[4.S.32]chloride GO:0006821 GO:0015108
[4.S.33]choline GO:0015871 GO:0015220
[4.S.34]citrate/succinate GO:0015744 GO:0015746 GO:0015515
[4.S.35]colicin GO:0042914 GO:0042912
[4.S.36]Cu+ GO:0006825 GO:0005375
[4.S.37]curli subunit
[4.S.38]cyanate GO:0015704 GO:0015110
[4.S.39]cysteine GO:0042883
[4.S.4]3-phenylpropionic acid GO:0042889
[4.S.40]cysteine/O-acetyl-L-serine/cysteine metabolites
[4.S.41]cytosine GO:0015856 GO:0015209
[4.S.42]D-alanine/D-serine/glycine GO:0042942 GO:0042941 GO:0042944 GO:0042945
[4.S.43]D-galactonate GO:0042875 GO:0042880
[4.S.44]D-glucarate GO:0042871 GO:0042878
[4.S.45]D-glucose/trehalose GO:0015771 GO:0015758 GO:0015574 GO:0005355
[4.S.46]dicarboxylate GO:0006835 GO:0005310
[4.S.47]dipeptide GO:0042938 GO:0042936
[4.S.48]D-ribose GO:0015752 GO:0015591
[4.S.49]drug GO:0015893 GO:0015238
[4.S.5]alkanesulfonate GO:0042918 GO:0042959
[4.S.50]D-xylose GO:0015753 GO:0015148
[4.S.51]enterochelin GO:0042930 GO:0042931
[4.S.52]fatty acid GO:0015908 GO:0015245
[4.S.53]Fe GO:0006826 GO:0005381
[4.S.54]Fe++ GO:0015682 GO:0015091
[4.S.56]ferric enterobactin GO:0015685 GO:0015620
[4.S.57]ferric hydroxamate GO:0015687 GO:0015622
[4.S.58]ferrichrome GO:0042928 GO:0042929
[4.S.59]formate GO:0015724 GO:0015499
[4.S.6]alkanesulphonate
[4.S.60]formate/oxalate GO:0015724 GO:0019532 GO:0015499 GO:0019531
[4.S.61]fosfidomycin/H+ GO:0042894 GO:0042898
[4.S.63]fructose GO:0015755 GO:0005353
[4.S.64]fucose GO:0015756 GO:0015150
[4.S.65]galactitol GO:0015796 GO:0015577
[4.S.66]galactose/H+ GO:0015757 GO:0015517
[4.S.67]gamma-aminobutyrate GO:0015812 GO:0015185
[4.S.68]glucitol/sorbitol GO:0015795 GO:0015576
[4.S.69]gluconate GO:0015725 GO:0015128
[4.S.70]gluconate/L-idonate GO:0015725 GO:0015726 GO:0015128 GO:0015568
[4.S.71]glucose GO:0015758 GO:0005355
[4.S.72]glucose/maltose GO:0015758 GO:0015768 GO:0005363 GO:0005355
[4.S.73]glucuronide GO:0015779 GO:0015164
[4.S.74]glutamate/aminobutyric acid GO:0015812 GO:0015813 GO:0015185 GO:0005313
[4.S.75]glutamate/aspartate GO:0015813 GO:0015810 GO:0005313 GO:0015183
[4.S.76]glutamine GO:0006868 GO:0015186
[4.S.77]glycerol GO:0015793 GO:0015168
[4.S.78]glycerol-3-P GO:0015793 GO:0015169
[4.S.79]glycine betaine/choline GO:0015838 GO:0015871
[4.S.8]alkylphosphonate GO:0042916 GO:0042917
[4.S.80]glycine betaine/proline GO:0015193 GO:0015187 GO:0015199 GO:0015418
[4.S.81]group A colicin GO:0042915 GO:0042913
[4.S.82]H+ GO:0015992 GO:0015078
[4.S.83]H+/acridine GO:0042909 GO:0042962
[4.S.84]H+/lactose/glucose GO:0015767 GO:0015758 GO:0015517 GO:0015528
[4.S.85]heme GO:0015886 GO:0015232
[4.S.86]hexose phosphate GO:0015712 GO:0015119
[4.S.87]hexuronate GO:0015736 GO:0015134
[4.S.88]histidine GO:0015817 GO:0005290
[4.S.89]histidine/lysine/arginine/ornithine GO:0015817 GO:0015819 GO:0015809 GO:0015822 GO:0015181 GO:0005290 GO:0015189 GO:0000064
[4.S.9]allantoin GO:0015720 GO:0015206
[4.S.90]homoserine/lactone GO:0042968 GO:0042970 GO:0042969 GO:0042971
[4.S.91]hydrophilic molecule
[4.S.92]hydrophilic molecules
[4.S.93]ion GO:0006811 GO:0015075
[4.S.95]iron dicitrate GO:0015688 GO:0015623
[4.S.96]K+ GO:0006813 GO:0015079
[4.S.97]K+/H+ GO:0015386
[4.S.98]lactate GO:0015727 GO:0015129
[4.S.99]lactose GO:0015767 GO:0015155
[5]Cell processes GO:0009987
[5.1]Cell division GO:0000910
[5.10]Defense/survival GO:0006952
[5.11]DNA uptake GO:0009290
[5.12]Biofilm production GO:0042710
[5.13]Virulence associated GO:0009405
[5.2]Cell cycle physiology GO:0007049
[5.3]Motility (incl. chemotaxis, energytaxis, aerotaxis, redoxtaxis) GO:0042330
[5.4]Genetic exchange, recombination GO:0006310
[5.5]Adaptation to stress GO:0006950
[5.5.1]Osmotic pressure GO:0006970
[5.5.2]Temperature extremes GO:0009266
[5.5.3]Starvation response GO:0042594
[5.5.4]pH response GO:0009268
[5.5.5]Dessication GO:0009269
[5.5.6]Other stresses (mechanical, nutritional, oxidative) GO:0009612 GO:0007584 GO:0006979
[5.5.7]Fe aquisition GO:0006826
[5.6]Protection GO:0006950
[5.6.1]Radiation GO:0009314
[5.6.2]Detoxification (xenobiotic metabolism) GO:0006805
[5.6.3]Cell killing GO:0001906
[5.6.4]Drug resistance/sensitivity GO:0042493
[5.8]SOS response GO:0009432
[6]Cell structure GO:0005575
[6.1]Membrane GO:0009274
[6.2]Peptidoglycan (murein) GO:0009274
[6.3]Surface antigens (ECA, O antigen of LPS)
[6.4]Flagellum GO:0019861
[6.5]Pilus GO:0009289
[6.6]Ribosome GO:0009281
[6.7]Capsule (M and K antigens) GO:0030113
[7]Location of gene products GO:0005575
[7.1]Cytoplasm GO:0005737
[7.2]Periplasmic space GO:0042597
[7.3]Inner membrane GO:0005886
[7.4]Outer membrane GO:0009279
[7.5]Extracellular GO:0005576
[8]extrachromosomal
[8.1]Prophage genes and phage related functions
[8.1.1]DNA packaging, phage assembly GO:0006323 GO:0042963
[8.1.2]Replication GO:0006261
[8.1.3]Regulation GO:0019054
[8.1.4]Integration, recombination GO:0015074 GO:0006310 GO:0019047
[8.1.5]Lysis GO:0019077
[8.1.6]Structural component GO:0005198
[8.2]Plasmid related
[8.2.1]replication and maintenance GO:0006261 GO:0006276
[8.2.2]plasmid transfer GO:0009291
[8.3]Transposon related
[8.3.1]transposases GO:0004803
[8.3.2]regulation of mobility GO:0000337
[8.4]Colicin related
[9]DNA sites
Suggestions
