8 hits
XFF4834R_chr13700 | XFF4834R_chr_1570777_1571667_f1_XFF4834R-XFF4834R_chr13700 | XFF4834R_chr13700 | putative plasmid mobilization protein |
XFF4834R_chr13750 | XFF4834R_chr_1573496_1575136_f2_XFF4834R-XFF4834R_chr13750 | XFF4834R_chr13750 | Putative plasmid mobilization protein |
XFF4834R_chr32100 | XFF4834R_chr34700026_3688624_r3_XFF4834R-XFF4834R_chr32100 | XFF4834R_chr32100 | putative MobA/MobL protein |
XFF4834R_pla00410 | XFF4834R_pla00310044_0033646_r2_XFF4834R-XFF4834R_pla00410 | XFF4834R_pla00410 | putative lytic transglycosylase |
XFF4834R_pla00420 | XFF4834R_pla00310627_0034163_r1_XFF4834R-XFF4834R_pla00420 | XFF4834R_pla00420 | putative conjugal transfer protein TraF; peptidase |
XFF4834R_plb00190 | XFF4834R_plb00150146_0018874_r2_XFF4834R-XFF4834R_plb00190 | XFF4834R_plb00190 | putative protein TraL |
XFF4834R_plb00200 | XFF4834R_plb00150884_0019273_r2_XFF4834R-XFF4834R_plb00200 | XFF4834R_plb00200 | putative TraD protein |
XFF4834R_plc00150 | XFF4834R_plc00150 | Putative plasmid transfer protein TraD |
![]() XFF4834R_chr13690 |
![]() DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
![]() |
![]() |
![]() XFF4834R_chr13710 |
ID | XFF4834R_chr_1570777_1571667_f1_XFF4834R-XFF4834R_chr13700 |
AC | XFF4834R_chr13700 |
LT | XFF4834R_chr13700 |
OR | XFF4834R_chr from 1570777 to 1571667 on strand + |
DE | putative plasmid mobilization protein |
IP | MobA/MobL protein |
CL | 8.2.2 plasmid transfer GO:0009291 |
EC | |
GO |
InterPro Biological Process: unidirectional conjugation (GO:0009291) Curated |
PM | |
AN | premier hit blastx avec Xcv : I=67% ; E=10-84 ; S=316 et 79% coverage avec plasmid mobilization protein ; 4 hits Xcv avec (putative) MobA/MobL family protein et 3 hits Xac pour plasmid mobilization prot ET 1 dom interpro MobA/MobL DONC PUTATIVE plasmid mobilization protein Rem : 2 hits pubmed avec E coli : 2 articles avec analyse fonctionnelle pour MobA seulement ET 1 article avec analyse de seq seulement pour mobilization plasmid ET I=35% seulement donc putative ET NON PROBABLE plasmid mobilization protein. |
CC | COG: [S] Function unknown; |
CC | MODEL: XFF4834R |
CC | STATUS: curated by bonneau (20100713) |
MW | 33026.8 Da |
SQ | 296 aa |
........10........20........30........40........50 |
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XFF4834R_chr32100 lcl|XFF4834R_chr34700026_3688624_r3_XFF4834R-XFF4834R_chr32100 |
1 |
197 |
S=536 I=53 E=1.60158e-58 |
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XFF4834R_chr13750 lcl|XFF4834R_chr_1573496_1575136_f2_XFF4834R-XFF4834R_chr13750 |
1 |
207 |
S=342 I=37 E=5.46611e-35 |
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YP_365109.1 lcl|XCV3378 |
1 |
195 |
S=513 I=49 E=3.67323e-55 |
putative MobA/MobL family protein |
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YP_362854.1 lcl|XCV1123 |
1 |
195 |
S=511 I=49 E=6.30683e-55 |
MobA/MobL family protein |
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NP_643568.1 lcl|mobL-XAC3260 |
1 |
223 |
S=476 I=49 E=1.0887e-50 |
plasmid mobilization protein |
![]() |
NP_641442.1 lcl|mobL-XAC1104 |
11 |
195 |
S=466 I=48 E=2.12867e-49 |
plasmid mobilization protein |
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NP_641841.1 lcl|mobL-XAC1507 |
1 |
197 |
S=346 I=38 E=7.06895e-35 |
plasmid mobilization protein |
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YP_362824.1 lcl|XCV1093 |
1 |
197 |
S=329 I=42 E=7.37161e-33 |
putative MobA/MobL family protein |
![]() |
YP_361502.1 lcl|XCVb0008 |
1 |
195 |
S=270 I=35 E=1.11372e-25 |
MobA/MobL family plasmid mobilization protein |
![]() |
1 |
192 |
S=299 I=35 E=1.52119e-27 |
ORF504 ; Plasmid |
Pubmed 16269793 |
|
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1 |
188 |
S=297 I=37 E=2.50042e-27 |
ORF237 ; Plasmid |
Pubmed 16269793 |
|
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1 |
200 |
S=276 I=35 E=8.17057e-25 |
TraA ; Plasmid |
||
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2 |
195 |
S=272 I=41 E=2.89265e-24 |
Mobilization protein ; Plasmid |
Pubmed 12570988 |
|
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1 |
195 |
S=271 I=35 E=3.79033e-24 |
Putative mobilization protein ; Plasmid |
Pubmed 16828160 |
|
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1 |
138 |
S=188 I=34 E=2.67327e-14 |
Mobilization protein mobL ; Conjugation Mobility Plasmid |
||
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1 |
160 |
S=139 I=27 E=2.35426e-08 |
Probable conjugal transfer protein traA ; ATP-binding Conjugation Nucleotide-binding Plasmid |
||
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1 |
160 |
S=124 I=26 E=1.32197e-06 |
Conjugal transfer protein traA ; ATP-binding Conjugation Nucleotide-binding Plasmid |
||
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1 |
147 |
S=123 I=25 E=2.02656e-06 |
Probable mobilization protein MobA ; Conjugation Mobility Plasmid |
||
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1 |
144 |
S=115 I=25 E=1.61416e-05 |
Conjugal transfer protein traA ; ATP-binding Conjugation Nucleotide-binding Plasmid |
||
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IPR005053 [PF03389] | 18 |
199 |
MobA/MobL protein |
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[seg] | 71 |
79 |
- |
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[seg] | 237 |
247 |
- |
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81 |
129 |
S=172 I=57 E=2.19212e-13 |
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8 |
82 |
S=145 I=45 E=4.06086e-10 |
Access unfiltered results
![]() |
Set of Uniprot with relevant PubMed cross-references ncbi-blastp |
39 hits |
![]() |
Swiss-Prot ncbi-blastp |
5 hits |
![]() |
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp |
2 hits |
![]() |
HAMAP scan |
0 hits |
![]() |
IprScan |
3 hits |
Miscellaneous analyses
![]() XFF4834R_chr13740 |
![]() DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
![]() |
![]() |
![]() XFF4834R_chr13760 |
ID | XFF4834R_chr_1573496_1575136_f2_XFF4834R-XFF4834R_chr13750 |
AC | XFF4834R_chr13750 |
LT | XFF4834R_chr13750 |
OR | XFF4834R_chr from 1573496 to 1575136 on strand + |
DE | Putative plasmid mobilization protein |
IP | MobA/MobL protein |
CL | 8.2.2 plasmid transfer GO:0009291 |
EC | |
GO |
InterPro Biological Process: unidirectional conjugation (GO:0009291) Curated |
PM | |
AN | partial homology with other plasmid mobilization proteins in Xapf |
CC | COG: [S] Function unknown; |
CC | MODEL: XFF4834R |
CC | STATUS: curated by darrasse (20110707) |
MW | 60589.5 Da |
SQ | 546 aa |
........10........20........30........40........50 |
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XFF4834R_chr32100 lcl|XFF4834R_chr34700026_3688624_r3_XFF4834R-XFF4834R_chr32100 |
1 |
241 |
S=554 I=49 E=2.03505e-60 |
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XFF4834R_chr13700 lcl|XFF4834R_chr_1570777_1571667_f1_XFF4834R-XFF4834R_chr13700 |
1 |
212 |
S=343 I=40 E=9.40818e-35 |
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NP_641841.1 lcl|mobL-XAC1507 |
1 |
511 |
S=1132 I=48 E=7.09617e-130 |
plasmid mobilization protein |
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NP_643568.1 lcl|mobL-XAC3260 |
1 |
241 |
S=518 I=50 E=1.89918e-55 |
plasmid mobilization protein |
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YP_362824.1 lcl|XCV1093 |
1 |
230 |
S=518 I=49 E=1.93259e-55 |
putative MobA/MobL family protein |
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YP_362854.1 lcl|XCV1123 |
1 |
312 |
S=485 I=41 E=2.01197e-51 |
MobA/MobL family protein |
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YP_365109.1 lcl|XCV3378 |
1 |
237 |
S=483 I=47 E=3.5771e-51 |
putative MobA/MobL family protein |
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NP_641442.1 lcl|mobL-XAC1104 |
10 |
312 |
S=439 I=41 E=6.73182e-46 |
plasmid mobilization protein |
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YP_361502.1 lcl|XCVb0008 |
1 |
241 |
S=336 I=39 E=2.16251e-33 |
MobA/MobL family plasmid mobilization protein |
![]() |
1 |
206 |
S=427 I=42 E=9.86494e-43 |
ORF504 ; Plasmid |
Pubmed 16269793 |
|
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1 |
193 |
S=406 I=42 E=3.48668e-40 |
ORF237 ; Plasmid |
Pubmed 16269793 |
|
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1 |
199 |
S=364 I=40 E=3.75558e-35 |
TraA ; Plasmid |
Pubmed 16672515 |
|
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1 |
199 |
S=361 I=41 E=8.0889e-35 |
TraA ; Plasmid |
||
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1 |
234 |
S=352 I=37 E=1.03169e-33 |
Putative mobilization protein ; Plasmid |
Pubmed 16828160 |
|
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1 |
161 |
S=286 I=39 E=6.77845e-26 |
Mobilization protein mobL ; Conjugation Mobility Plasmid |
||
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1 |
153 |
S=176 I=32 E=1.53509e-12 |
Conjugal transfer protein traA ; ATP-binding Conjugation Nucleotide-binding Plasmid |
||
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1 |
206 |
S=172 I=30 E=4.37033e-12 |
Probable conjugal transfer protein traA ; ATP-binding Conjugation Nucleotide-binding Plasmid |
||
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1 |
153 |
S=172 I=31 E=5.38754e-12 |
Probable mobilization protein MobA ; Conjugation Mobility Plasmid |
||
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1 |
155 |
S=154 I=30 E=7.10941e-10 |
Conjugal transfer protein traA ; ATP-binding Conjugation Nucleotide-binding Plasmid |
||
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IPR005053 [PF03389] | 18 |
207 |
MobA/MobL protein |
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[seg] | 459 |
472 |
- |
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159 |
506 |
S=947 I=55 E=2.96597e-107 |
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5 |
86 |
S=198 I=52 E=1.61505e-16 |
![]() |
79 |
156 |
S=152 I=45 E=7.79346e-11 |
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509 |
546 |
S=104 I=61 E=4.71763e-05 |
Access unfiltered results
![]() |
Set of Uniprot with relevant PubMed cross-references ncbi-blastp |
55 hits |
![]() |
Swiss-Prot ncbi-blastp |
6 hits |
![]() |
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp |
2 hits |
![]() |
HAMAP scan |
0 hits |
![]() |
IprScan |
2 hits |
Miscellaneous analyses
![]() XFF4834R_chr32090 |
![]() DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
![]() |
![]() |
![]() XFF4834R_chr32110 |
ID | XFF4834R_chr34700026_3688624_r3_XFF4834R-XFF4834R_chr32100 |
AC | XFF4834R_chr32100 |
LT | XFF4834R_chr32100 |
OR | XFF4834R_chr from 3687026 to 3688624 on strand - |
DE | putative MobA/MobL protein |
IP | MobA/MobL protein |
CL | 8.2.2 plasmid transfer GO:0009291 |
EC | |
GO |
InterPro Biological Process: unidirectional conjugation (GO:0009291) Curated |
PM | |
AN | Mobilization protein A (DNA strand transferase) /Mobilization protein mobB (Protein C) |
CC | COG: [L] Replication, recombination and repair; |
CC | MODEL: XFF4834R |
CC | STATUS: curated by pieretti (20101103) |
MW | 59019 Da |
SQ | 532 aa |
........10........20........30........40........50 |
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XFF4834R_chr13750 lcl|XFF4834R_chr_1573496_1575136_f2_XFF4834R-XFF4834R_chr13750 |
1 |
238 |
S=554 I=49 E=1.97481e-60 |
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XFF4834R_chr13700 lcl|XFF4834R_chr_1570777_1571667_f1_XFF4834R-XFF4834R_chr13700 |
1 |
197 |
S=537 I=56 E=2.4093e-58 |
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NP_643568.1 lcl|mobL-XAC3260 |
1 |
505 |
S=2156 I=85 E=0 |
plasmid mobilization protein |
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YP_362854.1 lcl|XCV1123 |
1 |
489 |
S=1073 I=50 E=1.02192e-122 |
MobA/MobL family protein |
![]() |
YP_365109.1 lcl|XCV3378 |
1 |
489 |
S=1041 I=49 E=7.31273e-119 |
putative MobA/MobL family protein |
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NP_641442.1 lcl|mobL-XAC1104 |
11 |
489 |
S=1009 I=49 E=6.39486e-115 |
plasmid mobilization protein |
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NP_641841.1 lcl|mobL-XAC1507 |
1 |
280 |
S=532 I=43 E=3.77171e-57 |
plasmid mobilization protein |
![]() |
YP_362824.1 lcl|XCV1093 |
1 |
270 |
S=446 I=44 E=9.18166e-47 |
putative MobA/MobL family protein |
![]() |
YP_361502.1 lcl|XCVb0008 |
1 |
251 |
S=368 I=40 E=2.85555e-37 |
MobA/MobL family plasmid mobilization protein |
![]() |
1 |
260 |
S=416 I=42 E=1.54651e-41 |
TraA ; Plasmid |
Pubmed 16672515 |
|
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1 |
192 |
S=397 I=48 E=3.78999e-39 |
ORF237 ; Plasmid |
Pubmed 16269793 |
|
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1 |
201 |
S=396 I=46 E=4.59136e-39 |
ORF504 ; Plasmid |
Pubmed 16269793 |
|
![]() |
1 |
253 |
S=376 I=39 E=1.2277e-36 |
Putative mobilization protein ; Plasmid |
Pubmed 16828160 |
|
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2 |
199 |
S=351 I=48 E=1.40795e-33 |
Mobilization protein ; Plasmid |
Pubmed 12570988 |
|
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1 |
240 |
S=343 I=44 E=1.083e-32 |
TraA ; Plasmid |
Pubmed 14702321 |
|
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1 |
240 |
S=338 I=41 E=4.68557e-32 |
TraA ; Plasmid |
Pubmed 18413319 |
|
![]() |
1 |
253 |
S=336 I=37 E=7.90592e-32 |
MobA ; Plasmid |
||
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1 |
200 |
S=325 I=40 E=1.99049e-30 |
TraA protein ; Plasmid |
Pubmed 17881053 |
|
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1 |
252 |
S=300 I=34 E=1.85174e-27 |
RepB/MobA-like protein ; Plasmid |
Pubmed 11400063 |
|
![]() |
1 |
266 |
S=254 I=34 E=4.53291e-22 |
Mobilization protein mobL ; Conjugation Mobility Plasmid |
||
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1 |
234 |
S=214 I=32 E=3.21285e-17 |
Conjugal transfer protein traA ; ATP-binding Conjugation Nucleotide-binding Plasmid |
||
![]() |
1 |
253 |
S=209 I=31 E=1.59811e-16 |
Probable conjugal transfer protein traA ; ATP-binding Conjugation Nucleotide-binding Plasmid |
||
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[coil] | 245 |
266 |
- |
![]() |
IPR005053 [PF03389] | 17 |
234 |
MobA/MobL protein |
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[seg] | 281 |
287 |
- |
![]() |
[seg] | 453 |
461 |
- |
![]() |
[seg] | 506 |
532 |
- |
![]() |
251 |
489 |
S=598 I=52 E=7.21792e-65 |
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5 |
86 |
S=179 I=55 E=3.99361e-14 |
![]() |
164 |
326 |
S=151 I=31 E=1.11451e-10 |
![]() |
81 |
127 |
S=135 I=53 E=8.49138e-09 |
![]() |
126 |
241 |
S=135 I=35 E=9.84802e-09 |
![]() |
79 |
150 |
S=127 I=40 E=9.66971e-08 |
Access unfiltered results
![]() |
Set of Uniprot with relevant PubMed cross-references ncbi-blastp |
52 hits |
![]() |
Swiss-Prot ncbi-blastp |
7 hits |
![]() |
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp |
2 hits |
![]() |
HAMAP scan |
0 hits |
![]() |
IprScan |
5 hits |
Miscellaneous analyses
![]() XFF4834R_pla00400 |
![]() DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
![]() |
![]() |
![]() XFF4834R_pla00420 |
ID | XFF4834R_pla00310044_0033646_r2_XFF4834R-XFF4834R_pla00410 |
AC | XFF4834R_pla00410 |
LT | XFF4834R_pla00410 |
OR | XFF4834R_pla from 33044 to 33646 on strand - |
DE | putative lytic transglycosylase |
IP | Lytic transglycosylase-like, catalytic |
CL | 8.2.2 plasmid transfer GO:0009291 |
EC | |
GO |
InterPro Curated |
PM | |
AN | for CL : 39% identity (on about 80% of the two sequences) with conjugal transfer protein TRWN in E.coli and signature prodom TRWN. |
CC | COG: [M] Cell wall/membrane/envelope biogenesis; |
CC | MODEL: XFF4834R |
CC | STATUS: curated by irobene (20100823) |
MW | 21230 Da |
SQ | 200 aa |
........10........20........30........40........50 |
Access unfiltered results
![]() |
Set of Uniprot with relevant PubMed cross-references ncbi-blastp |
46 hits |
![]() |
Swiss-Prot ncbi-blastp |
7 hits |
![]() |
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp |
1 hits |
![]() |
HAMAP scan |
0 hits |
![]() |
IprScan |
4 hits |
Miscellaneous analyses
![]() XFF4834R_pla00410 |
![]() DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
![]() |
![]() |
![]() XFF4834R_pla00430 |
ID | XFF4834R_pla00310627_0034163_r1_XFF4834R-XFF4834R_pla00420 |
AC | XFF4834R_pla00420 |
LT | XFF4834R_pla00420 |
OR | XFF4834R_pla from 33627 to 34163 on strand - |
DE | putative conjugal transfer protein TraF; peptidase |
IP | Peptidase S24/S26A/S26B/S26C |
CL | 8.2.2 plasmid transfer GO:0009291 |
EC | |
GO |
InterPro Biological Process: proteolysis (GO:0006508) Cellular Component: membrane (GO:0016020) Molecular Function: serine-type peptidase activity (GO:0008236) Curated |
PM | |
AN | better coding probability with ACUR matrix |
CC | COG: [OU] Posttranslational modification, protein turnover, chaperones;Intracellular trafficking, secretion, and vesicular transport; |
CC | MODEL: XFF4834R |
CC | STATUS: curated by lnoel (20100802) |
MW | 18857.4 Da |
SQ | 178 aa |
........10........20........30........40........50 |
![]() |
23 |
168 |
S=141 I=34 E=8.98431e-09 |
Tiorf110 protein ; Plasmid |
||
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23 |
168 |
S=130 I=31 E=1.74139e-07 |
Conjugal transfer protein traF ; Conjugation Periplasm Plasmid Signal |
Pubmed 8763953 |
|
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12 |
169 |
S=124 I=32 E=1.0961e-06 |
TraF ; Plasmid |
Pubmed 20376355 |
|
![]() |
23 |
170 |
S=119 I=33 E=4.30854e-06 |
Riorf113 protein ; Plasmid |
||
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17 |
170 |
S=113 I=29 E=1.93023e-05 |
Probable conjugal transfer protein TraF ; Plasmid |
Pubmed 12591886 |
|
![]() |
23 |
168 |
S=130 I=31 E=1.1964e-07 |
Conjugal transfer protein traF ; Conjugation Periplasm Plasmid Signal |
||
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23 |
170 |
S=111 I=31 E=2.29689e-05 |
Probable conjugal transfer protein traF ; Conjugation Periplasm Plasmid Signal |
||
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IPR000223 [PR00727] | 72 |
84 |
Peptidase S26A, signal peptidase I |
![]() |
IPR000223 [PR00727] | 130 |
149 |
Peptidase S26A, signal peptidase I |
![]() |
IPR011056 [G3DSA:2.10.109.10] | 38 |
171 |
Peptidase S24/S26A/S26B/S26C, beta-ribbon domain |
![]() |
[PTHR12383:SF2] | 67 |
163 |
- |
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[PTHR12383] | 67 |
163 |
- |
![]() |
IPR019533 [PF10502] | 21 |
168 |
Peptidase S26, conserved region |
![]() |
[SignalP-NN(euk)] | 1 |
31 |
- |
![]() |
[tmhmm] | 12 |
34 |
- |
![]() |
32 |
167 |
S=127 I=31 E=6.42029e-08 |
![]() |
20 |
128 |
S=109 I=34 E=9.8258e-06 |
![]() |
IPR015927 [SSF51306] | 38 |
167 |
Peptidase S24/S26A/S26B/S26C |
Access unfiltered results
![]() |
Set of Uniprot with relevant PubMed cross-references ncbi-blastp |
6 hits |
![]() |
Swiss-Prot ncbi-blastp |
2 hits |
![]() |
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp |
0 hits |
![]() |
HAMAP scan |
0 hits |
![]() |
IprScan |
9 hits |
Miscellaneous analyses
![]() XFF4834R_plb_0021 |
![]() DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
![]() |
![]() |
![]() XFF4834R_plb00200 |
ID | XFF4834R_plb00150146_0018874_r2_XFF4834R-XFF4834R_plb00190 |
AC | XFF4834R_plb00190 |
LT | XFF4834R_plb00190 |
OR | XFF4834R_plb from 18146 to 18874 on strand - |
DE | putative protein TraL |
IP | |
CL | 8.2.2 plasmid transfer GO:0009291 |
EC | |
GO |
InterPro Curated |
PM | |
AN | |
CC | COG: [R] General function prediction only; |
CC | MODEL: XFF4834R |
CC | STATUS: curated by darrasse (20120313) |
MW | 27056.6 Da |
SQ | 242 aa |
........10........20........30........40........50 |
![]() |
5 |
238 |
S=492 I=42 E=3.315e-51 |
TraL ; Plasmid |
Pubmed 15489427 |
|
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5 |
238 |
S=467 I=40 E=3.93663e-48 |
TraL ; Plasmid |
||
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5 |
238 |
S=465 I=40 E=6.93822e-48 |
TraL ; Plasmid |
Pubmed 16445980 |
|
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5 |
238 |
S=464 I=41 E=9.8335e-48 |
TraL |
Pubmed 11923356 |
|
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5 |
238 |
S=460 I=39 E=2.5658e-47 |
TraL protein ; Plasmid |
Pubmed 17132149 |
|
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5 |
238 |
S=460 I=40 E=3.21864e-47 |
TraL protein ; Plasmid |
Pubmed 12589432 |
|
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5 |
238 |
S=454 I=39 E=1.49313e-46 |
TraL origin of transfer (OriT) protein ; Plasmid |
Pubmed 15528648 |
|
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5 |
238 |
S=454 I=39 E=1.49313e-46 |
TraL protein ; Plasmid |
Pubmed 16122561 |
|
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5 |
238 |
S=454 I=39 E=1.49313e-46 |
TraL protein ; Plasmid |
Pubmed 16980416 |
|
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5 |
238 |
S=453 I=40 E=2.2105e-46 |
TraL protein ; Plasmid |
||
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5 |
238 |
S=453 I=40 E=1.52558e-46 |
Protein traL ; Conjugation Plasmid |
||
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5 |
238 |
S=453 I=39 E=1.57973e-46 |
Protein traL ; Conjugation Plasmid |
||
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81 |
240 |
S=387 I=46 E=2.13569e-39 |
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4 |
41 |
S=128 I=61 E=4.64145e-08 |
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2 |
156 |
S=110 I=26 E=6.68285e-06 |
Access unfiltered results
![]() |
Set of Uniprot with relevant PubMed cross-references ncbi-blastp |
18 hits |
![]() |
Swiss-Prot ncbi-blastp |
2 hits |
![]() |
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp |
0 hits |
![]() |
HAMAP scan |
0 hits |
![]() |
IprScan |
0 hits |
Miscellaneous analyses
![]() XFF4834R_plb00190 |
![]() DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
![]() |
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![]() XFF4834R_plb00010 |
ID | XFF4834R_plb00150884_0019273_r2_XFF4834R-XFF4834R_plb00200 |
AC | XFF4834R_plb00200 |
LT | XFF4834R_plb00200 |
OR | XFF4834R_plb from 18884 to 19273 on strand - |
DE | putative TraD protein |
IP | |
CL | 8.2.2 plasmid transfer GO:0009291 |
EC | |
GO |
InterPro Curated |
PM | |
AN | |
CC | COG: [O] Posttranslational modification, protein turnover, chaperones; |
CC | MODEL: XFF4834R |
CC | STATUS: curated by lnoel (20100802) |
MW | 13834.5 Da |
SQ | 129 aa |
........10........20........30........40........50 |
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XFF4834R_plc00150 lcl|XFF4834R_plc00080215_0009661_r1_XFF4834R-XFF4834R_plc00150 |
21 |
76 |
S=111 I=39 E=1.47115e-07 |
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YP_361530.1 lcl|XCVc0014 |
21 |
72 |
S=110 I=40 E=7.14865e-07 |
putative TraD protein |
![]() |
NP_644752.1 lcl|XACb0024-XACb0024 |
20 |
72 |
S=96 I=38 E=3.31349e-05 |
hypothetical protein |
![]() |
NP_644699.1 lcl|XACa0013-XACa0013 |
20 |
72 |
S=96 I=38 E=3.31349e-05 |
hypothetical protein |
![]() |
8 |
71 |
S=145 I=45 E=1.13443e-09 |
Putative uncharacterized protein ; Plasmid |
Pubmed 15262947 |
|
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20 |
75 |
S=131 I=43 E=6.83024e-08 |
YciA protein ; Plasmid |
Pubmed 1400257 |
|
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[seg] | 77 |
88 |
- |
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1 |
73 |
S=179 I=45 E=2.81625e-14 |
Access unfiltered results
![]() |
Set of Uniprot with relevant PubMed cross-references ncbi-blastp |
2 hits |
![]() |
Swiss-Prot ncbi-blastp |
0 hits |
![]() |
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp |
1 hits |
![]() |
HAMAP scan |
0 hits |
![]() |
IprScan |
1 hits |
Miscellaneous analyses
![]() XFF4834R_plc00140 |
![]() DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
![]() |
![]() |
![]() XFF4834R_plc00160 |
ID | |
AC | XFF4834R_plc00150 |
LT | XFF4834R_plc00150 |
OR | XFF4834R_plc from 8215 to 8661 on strand - |
DE | Putative plasmid transfer protein TraD |
IP | |
CL | 8.2.2 plasmid transfer GO:0009291 |
EC | |
GO |
InterPro Curated |
PM | |
AN | |
CC | COG: [S] Function unknown; |
CC | MODEL: XFF4834R |
CC | STATUS: curated by szurek (20101122) |
MW | 16276.1 Da |
SQ | 148 aa |
........10........20........30........40........50 |
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XFF4834R_plb00200 lcl|XFF4834R_plb00150884_0019273_r2_XFF4834R-XFF4834R_plb00200 |
19 |
74 |
S=111 I=39 E=1.86478e-07 |
![]() |
XFF4834R_chr42480 lcl|XFF4834R_chr_4929380_4929763_r3_XFF4834R-XFF4834R_chr42480 |
24 |
76 |
S=109 I=42 E=3.64912e-07 |
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1 |
148 |
S=534 I=79 E=4.00859e-58 |
putative stable plasmid inheritance protein |
![]() |
YP_361530.1 lcl|XCVc0014 |
9 |
114 |
S=148 I=36 E=2.07541e-11 |
putative TraD protein |
![]() |
NP_644752.1 lcl|XACb0024-XACb0024 |
8 |
76 |
S=142 I=43 E=1.23976e-10 |
hypothetical protein |
![]() |
NP_644699.1 lcl|XACa0013-XACa0013 |
8 |
76 |
S=142 I=43 E=1.23976e-10 |
hypothetical protein |
![]() |
19 |
145 |
S=234 I=45 E=3.12611e-20 |
StbA ; Plasmid |
Pubmed 18268088 |
|
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19 |
145 |
S=234 I=45 E=3.1811e-20 |
Putative uncharacterized protein ; Plasmid |
Pubmed 14645321 |
|
![]() |
19 |
145 |
S=233 I=45 E=3.26541e-20 |
Conserved hypothetical plasmid protein |
Pubmed 18268088 |
|
![]() |
19 |
145 |
S=227 I=44 E=1.85119e-19 |
StbA ; Plasmid |
Pubmed 18268088 |
|
![]() |
19 |
145 |
S=221 I=43 E=1.17541e-18 |
Putative uncharacterized protein ; Plasmid |
||
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19 |
87 |
S=147 I=46 E=9.71427e-10 |
Putative TraD protein ; Plasmid |
Pubmed 12534468 |
|
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19 |
78 |
S=145 I=48 E=1.8358e-09 |
Putative plasmid transfer protein TraD |
||
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19 |
94 |
S=137 I=37 E=1.59543e-08 |
Putative TraD protein ; Plasmid |
Pubmed 15288784 |
|
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19 |
94 |
S=137 I=37 E=1.59543e-08 |
Putative TraD protein ; Plasmid |
Pubmed 10719200 |
|
![]() |
19 |
72 |
S=121 I=44 E=1.53818e-06 |
YciA protein ; Plasmid |
Pubmed 1400257 |
|
![]() |
19 |
71 |
S=138 I=47 E=3.14437e-09 |
![]() |
24 |
121 |
S=107 I=30 E=1.58758e-05 |
Access unfiltered results
![]() |
Set of Uniprot with relevant PubMed cross-references ncbi-blastp |
10 hits |
![]() |
Swiss-Prot ncbi-blastp |
0 hits |
![]() |
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp |
2 hits |
![]() |
HAMAP scan |
0 hits |
![]() |
IprScan |
0 hits |
Miscellaneous analyses