Xanthomonas fuscans subsp. fuscans

8 hits

  1. XFF4834R_chr13700XFF4834R_chr_1570777_1571667_f1_XFF4834R-XFF4834R_chr13700XFF4834R_chr13700putative plasmid mobilization protein
  2. XFF4834R_chr13750XFF4834R_chr_1573496_1575136_f2_XFF4834R-XFF4834R_chr13750XFF4834R_chr13750Putative plasmid mobilization protein
  3. XFF4834R_chr32100XFF4834R_chr34700026_3688624_r3_XFF4834R-XFF4834R_chr32100XFF4834R_chr32100putative MobA/MobL protein
  4. XFF4834R_pla00410XFF4834R_pla00310044_0033646_r2_XFF4834R-XFF4834R_pla00410XFF4834R_pla00410putative lytic transglycosylase
  5. XFF4834R_pla00420XFF4834R_pla00310627_0034163_r1_XFF4834R-XFF4834R_pla00420XFF4834R_pla00420putative conjugal transfer protein TraF; peptidase
  6. XFF4834R_plb00190XFF4834R_plb00150146_0018874_r2_XFF4834R-XFF4834R_plb00190XFF4834R_plb00190putative protein TraL
  7. XFF4834R_plb00200XFF4834R_plb00150884_0019273_r2_XFF4834R-XFF4834R_plb00200XFF4834R_plb00200putative TraD protein
  8. XFF4834R_plc00150XFF4834R_plc00150Putative plasmid transfer protein TraD

XFF4834R_chr_1570777_1571667_f1_XFF4834R-XFF4834R_chr13700 XFF4834R_chr13700
XFF4834R_chr13690
XFF4834R_chr13690 		Cluster
DrawMap 		XML file

FASTA file 		Extract
Sequence 		Codon
Usage 		Framed OrthoMCL XFF4834R_chr13710
XFF4834R_chr13710
ID XFF4834R_chr_1570777_1571667_f1_XFF4834R-XFF4834R_chr13700
AC XFF4834R_chr13700
LT XFF4834R_chr13700
OR XFF4834R_chr from 1570777 to 1571667 on strand +
DE putative plasmid mobilization protein
IP MobA/MobL protein
CL 8.2.2 plasmid transfer GO:0009291
EC
GO InterPro
Biological Process: unidirectional conjugation (GO:0009291)

Curated
PM
AN premier hit blastx avec Xcv : I=67% ; E=10-84 ; S=316 et 79% coverage avec plasmid mobilization protein ; 4 hits Xcv avec (putative) MobA/MobL family protein et 3 hits Xac pour plasmid mobilization prot ET 1 dom interpro MobA/MobL DONC PUTATIVE plasmid mobilization protein Rem : 2 hits pubmed avec E coli : 2 articles avec analyse fonctionnelle pour MobA seulement ET 1 article avec analyse de seq seulement pour mobilization plasmid ET I=35% seulement donc putative ET NON PROBABLE plasmid mobilization protein.
CC COG: [S] Function unknown;
CC MODEL: XFF4834R
CC STATUS: curated by bonneau (20100713)
MW 33026.8 Da
SQ 296 aa
  
........10........20........30........40........50
         |         |         |         |         |
MAIYYTRIKTYSRSKGHSAVAAAAYRGGYLLTDPKSGARHDYRGRAGIIQ
SRCLAPPGSPAWIDDPQALWAAAEAAERRHNSTVGRDFSIALPHELDDPK
RWELVLDIAHRLIERFGFALQASHHRPTKDDPRYFYAHLLATTRRMEACG
LTQKTRVLDGRINGLAEIQWIRAMIADRINAHLAQAGIGKAVEHRPLTER
LEAMRGNEILVQGHASFEQLLSRYRQEGRLLSVPDGRRAEQAQRERQGLG
MDTSADETSVARMAIMPASVGRLSSSRDDEAQLAAQGDPHDHPDSR

    





Show or not Domain decomposition
 

    

        
            
                XFF4834R
            
                
        
XFF4834R_chr32100 lcl|XFF4834R_chr34700026_3688624_r3_XFF4834R-XFF4834R_chr32100

        
1

	
197

	
S=536 I=53 E=1.60158e-58

	

     	

   





    

        
            
                XFF4834R
            
                
        
XFF4834R_chr13750 lcl|XFF4834R_chr_1573496_1575136_f2_XFF4834R-XFF4834R_chr13750

        
1

	
207

	
S=342 I=37 E=5.46611e-35

	

     	

   





    

        
            
                XFF4834R
            
                
        
YP_365109.1 lcl|XCV3378

        
1

	
195

	
S=513 I=49 E=3.67323e-55

	
putative MobA/MobL family protein

     	

   





    

        
            
                XFF4834R
            
                
        
YP_362854.1 lcl|XCV1123

        
1

	
195

	
S=511 I=49 E=6.30683e-55

	
MobA/MobL family protein

     	

   





    

        
            
                XFF4834R
            
                
        
NP_643568.1 lcl|mobL-XAC3260

        
1

	
223

	
S=476 I=49 E=1.0887e-50

	
plasmid mobilization protein

     	

   





    

        
            
                XFF4834R
            
                
        
NP_641442.1 lcl|mobL-XAC1104

        
11

	
195

	
S=466 I=48 E=2.12867e-49

	
plasmid mobilization protein

     	

   





    

        
            
                XFF4834R
            
                
        
NP_641841.1 lcl|mobL-XAC1507

        
1

	
197

	
S=346 I=38 E=7.06895e-35

	
plasmid mobilization protein

     	

   





    

        
            
                XFF4834R
            
                
        
YP_362824.1 lcl|XCV1093

        
1

	
197

	
S=329 I=42 E=7.37161e-33

	
putative MobA/MobL family protein

     	

   





    

        
            
                XFF4834R
            
                
        
YP_361502.1 lcl|XCVb0008

        
1

	
195

	
S=270 I=35 E=1.11372e-25

	
MobA/MobL family plasmid mobilization protein

     	

   





    

        
                pubmed
        
        

        
1

	
192

	
S=299 I=35 E=1.52119e-27

	
ORF504 ; Plasmid

	
Pubmed 16269793

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
1

	
188

	
S=297 I=37 E=2.50042e-27

	
ORF237 ; Plasmid

	
Pubmed 16269793

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
1

	
200

	
S=276 I=35 E=8.17057e-25

	
TraA ; Plasmid

	
Pubmed 17158670,20118371

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
2

	
195

	
S=272 I=41 E=2.89265e-24

	
Mobilization protein ; Plasmid

	
Pubmed 12570988

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
1

	
195

	
S=271 I=35 E=3.79033e-24

	
Putative mobilization protein ; Plasmid

	
Pubmed 16828160

    

    

         
        
prodomImg

    





    

        
            
                sp_Pdown
            
        
        
sp|P20085|MOBL_THIFE

        
1

	
138

	
S=188 I=34 E=2.67327e-14

	
Mobilization protein mobL ; Conjugation Mobility Plasmid

    





    

        
            
                sp_Pdown
            
        
        
sp|P55418|TRAA_RHISN

        
1

	
160

	
S=139 I=27 E=2.35426e-08

	
Probable conjugal transfer protein traA ; ATP-binding Conjugation Nucleotide-binding Plasmid

    





    

        
            
                sp_Pdown
            
        
        
sp|Q44349|TRAA_AGRT5

        
1

	
160

	
S=124 I=26 E=1.32197e-06

	
Conjugal transfer protein traA ; ATP-binding Conjugation Nucleotide-binding Plasmid

    





    

        
            
                sp_Pdown
            
        
        
sp|Q8GN32|MOBA_BIFLO

        
1

	
147

	
S=123 I=25 E=2.02656e-06

	
Probable mobilization protein MobA ; Conjugation Mobility Plasmid

    





    

        
            
                sp_Pdown
            
        
        
sp|Q44363|TRAA_RHIRD

        
1

	
144

	
S=115 I=25 E=1.61416e-05

	
Conjugal transfer protein traA ; ATP-binding Conjugation Nucleotide-binding Plasmid

    





    

        Iprscan
        IPR005053
	[PF03389]
	
18

	
199

	
	
MobA/MobL protein

    





    

        Iprscan
        
	[seg]
	
71

	
79

	
	
-

    





    

        Iprscan
        
	[seg]
	
237

	
247

	
	
-

    





    

        
            
                
            
                
        
PDA4I6I5

        
81

	
129

	
S=172 I=57 E=2.19212e-13

    	
    





    

        
            
                
            
                
        
PDA1G0P2

        
8

	
82

	
S=145 I=45 E=4.06086e-10

    	
    




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  Validation code (copy this one JeERjh80)  
 
     



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                pubmed
            
        
	    
            
Set of Uniprot with relevant PubMed cross-references ncbi-blastp

        		
 	    
            39 hits
        
    

    

        
            
                swiss-prot
            
        
	    
            
Swiss-Prot ncbi-blastp

        		
 	    
            5 hits
        
    

    
    
    

        
            
                XFF4834R
            
        
    	
            
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp

        		        
        
            2 hits
        
    

        
    

        
            
                hamap
            
        
	
            
HAMAP scan

        		        
        
            0 hits
        
    

    
    

	    
            
                Interpro Scan
            
            
	        
                
IprScan

            		        
            
                3 hits
            
    








Show or not Miscellaneous analyses




    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetLocalBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBkWj5Qy/XFF4834R_chr13700.xml_fasta", "https://iant.toulouse.inra.fr/bacteria/annotation/web/img/XFF4834R.png"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    
    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetNcbiBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBkWj5Qy/XFF4834R_chr13700.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetUniprotBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBkWj5Qy/XFF4834R_chr13700.xml_fasta"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetKeggBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBkWj5Qy/XFF4834R_chr13700.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    

    






XFF4834R_chr_1573496_1575136_f2_XFF4834R-XFF4834R_chr13750 XFF4834R_chr13750




    

         
             
            XFF4834R_chr13740
            
XFF4834R_chr13740
            
        		


       
           
	   Cluster
	   
DrawMap
	   
        		
	
        
            XML file
        	


	    FASTA file
        		
	
	
             
            Extract
Sequence
            
        		
	
	
             
            Codon
Usage
            
        		
    
    
            
            Framed
            
     
  	



	
            OrthoMCL
            
    
  	
    
    
    

     


	
             
            XFF4834R_chr13760
            
XFF4834R_chr13760
            
        		

    





    

        ID
        XFF4834R_chr_1573496_1575136_f2_XFF4834R-XFF4834R_chr13750
    

    

        AC
        XFF4834R_chr13750
    

    

        LT
        XFF4834R_chr13750
    

    

        OR
        XFF4834R_chr from 1573496 to 1575136 on strand +
    

   

        DE
        Putative plasmid mobilization protein 
  

   

        IP
        MobA/MobL protein
  
  
  
  

        CL
        8.2.2 plasmid transfer	GO:0009291 
    

  

        EC
        
    

    
    

        GO
        
            InterPro
Biological Process: unidirectional conjugation (GO:0009291)


            Curated

        		
    


  

        PM
        
    

  

        AN
        partial homology with other plasmid mobilization proteins in Xapf
    

  

        CC
        COG: [S] Function unknown; 
    

    

        CC
        MODEL: XFF4834R 
  
    
  

        CC
        STATUS: curated by darrasse (20110707)
  

  
  


    

        MW
        60589.5 Da
    


    

        SQ
        546 aa
    

    

         
        
........10........20........30........40........50
         |         |         |         |         |
MAIYHSHMKSFGRGKGDSSVAAAAYRAGFDLVDEATGLRHEYSRRYGVAF
AQMLAPKGSPNWCLDAEKFWNANEAAETRKNALVAREVEVALPQSLTDEQ
RKDLALSLGQLLVDRHQVAVLVAVHLPSRDGDRRNHHVHLLMSSRQVGPD
GFGERAGTEFDARQGEGTRAVRALRKEIAAEINRHLRKAGIQKTVDPRTL
QAQAREAAMKGDFERARELTRRPGKHMGKAKVALMRKTNFTAEVRGRGGA
DAAIALSNIVAAHMKASGTLVQPVPPSHSHAAALRDRSKAHSSSGGKRHL
AQPRARAAGHLQQIKERLARQAAPRPGLYTPYSGQARHLSKVTRLARSSG
RPDSEVLNAEAQLIEDWLEAQREVAQQSLEVLRQIPGIQIEPEFERAYAT
LVCRRVDSYPTKPFLFEDTEMLARSISKYAHTLVRPYKARMAVLDAQAKL
ADQQDNPDARVVARARQRVARAKLHVSPRIQAIQEWRIKKARKVMVEAAE
ALEKNFALQPIEVQPSVATVDEAPPPQVESEAGHWELKFRPPKPGF

    






    

        
            
                XFF4834R
            
                
        
XFF4834R_chr32100 lcl|XFF4834R_chr34700026_3688624_r3_XFF4834R-XFF4834R_chr32100

        
1

	
241

	
S=554 I=49 E=2.03505e-60

	

     	

   





    

        
            
                XFF4834R
            
                
        
XFF4834R_chr13700 lcl|XFF4834R_chr_1570777_1571667_f1_XFF4834R-XFF4834R_chr13700

        
1

	
212

	
S=343 I=40 E=9.40818e-35

	

     	

   





    

        
            
                XFF4834R
            
                
        
NP_641841.1 lcl|mobL-XAC1507

        
1

	
511

	
S=1132 I=48 E=7.09617e-130

	
plasmid mobilization protein

     	

   





    

        
            
                XFF4834R
            
                
        
NP_643568.1 lcl|mobL-XAC3260

        
1

	
241

	
S=518 I=50 E=1.89918e-55

	
plasmid mobilization protein

     	

   





    

        
            
                XFF4834R
            
                
        
YP_362824.1 lcl|XCV1093

        
1

	
230

	
S=518 I=49 E=1.93259e-55

	
putative MobA/MobL family protein

     	

   





    

        
            
                XFF4834R
            
                
        
YP_362854.1 lcl|XCV1123

        
1

	
312

	
S=485 I=41 E=2.01197e-51

	
MobA/MobL family protein

     	

   





    

        
            
                XFF4834R
            
                
        
YP_365109.1 lcl|XCV3378

        
1

	
237

	
S=483 I=47 E=3.5771e-51

	
putative MobA/MobL family protein

     	

   





    

        
            
                XFF4834R
            
                
        
NP_641442.1 lcl|mobL-XAC1104

        
10

	
312

	
S=439 I=41 E=6.73182e-46

	
plasmid mobilization protein

     	

   





    

        
            
                XFF4834R
            
                
        
YP_361502.1 lcl|XCVb0008

        
1

	
241

	
S=336 I=39 E=2.16251e-33

	
MobA/MobL family plasmid mobilization protein

     	

   





    

        
                pubmed
        
        

        
1

	
206

	
S=427 I=42 E=9.86494e-43

	
ORF504 ; Plasmid

	
Pubmed 16269793

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
1

	
193

	
S=406 I=42 E=3.48668e-40

	
ORF237 ; Plasmid

	
Pubmed 16269793

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
1

	
199

	
S=364 I=40 E=3.75558e-35

	
TraA ; Plasmid

	
Pubmed 16672515

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
1

	
199

	
S=361 I=41 E=8.0889e-35

	
TraA ; Plasmid

	
Pubmed 17158670,20118371

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
1

	
234

	
S=352 I=37 E=1.03169e-33

	
Putative mobilization protein ; Plasmid

	
Pubmed 16828160

    

    

         
        
prodomImg

    





    

        
            
                sp_Pdown
            
        
        
sp|P20085|MOBL_THIFE

        
1

	
161

	
S=286 I=39 E=6.77845e-26

	
Mobilization protein mobL ; Conjugation Mobility Plasmid

    





    

        
            
                sp_Pdown
            
        
        
sp|Q44349|TRAA_AGRT5

        
1

	
153

	
S=176 I=32 E=1.53509e-12

	
Conjugal transfer protein traA ; ATP-binding Conjugation Nucleotide-binding Plasmid

    





    

        
            
                sp_Pdown
            
        
        
sp|P55418|TRAA_RHISN

        
1

	
206

	
S=172 I=30 E=4.37033e-12

	
Probable conjugal transfer protein traA ; ATP-binding Conjugation Nucleotide-binding Plasmid

    





    

        
            
                sp_Pdown
            
        
        
sp|Q8GN32|MOBA_BIFLO

        
1

	
153

	
S=172 I=31 E=5.38754e-12

	
Probable mobilization protein MobA ; Conjugation Mobility Plasmid

    





    

        
            
                sp_Pdown
            
        
        
sp|Q44363|TRAA_RHIRD

        
1

	
155

	
S=154 I=30 E=7.10941e-10

	
Conjugal transfer protein traA ; ATP-binding Conjugation Nucleotide-binding Plasmid

    





    

        Iprscan
        IPR005053
	[PF03389]
	
18

	
207

	
	
MobA/MobL protein

    





    

        Iprscan
        
	[seg]
	
459

	
472

	
	
-

    





    

        
            
                
            
                
        
PD674890

        
159

	
506

	
S=947 I=55 E=2.96597e-107

    	
    





    

        
            
                
            
                
        
PDA1G0P2

        
5

	
86

	
S=198 I=52 E=1.61505e-16

    	
    





    

        
            
                
            
                
        
PD007732

        
79

	
156

	
S=152 I=45 E=7.79346e-11

    	
    





    

        
            
                
            
                
        
PDA9N8G1

        
509

	
546

	
S=104 I=61 E=4.71763e-05

    	
    




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Show or not Access unfiltered results






    

       
            
                pubmed
            
        
	    
            
Set of Uniprot with relevant PubMed cross-references ncbi-blastp

        		
 	    
            55 hits
        
    

    

        
            
                swiss-prot
            
        
	    
            
Swiss-Prot ncbi-blastp

        		
 	    
            6 hits
        
    

    
    
    

        
            
                XFF4834R
            
        
    	
            
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp

        		        
        
            2 hits
        
    

        
    

        
            
                hamap
            
        
	
            
HAMAP scan

        		        
        
            0 hits
        
    

    
    

	    
            
                Interpro Scan
            
            
	        
                
IprScan

            		        
            
                2 hits
            
    








Show or not Miscellaneous analyses




    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetLocalBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBkWj5Qy/XFF4834R_chr13750.xml_fasta", "https://iant.toulouse.inra.fr/bacteria/annotation/web/img/XFF4834R.png"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    
    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetNcbiBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBkWj5Qy/XFF4834R_chr13750.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetUniprotBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBkWj5Qy/XFF4834R_chr13750.xml_fasta"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetKeggBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBkWj5Qy/XFF4834R_chr13750.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    

    






XFF4834R_chr34700026_3688624_r3_XFF4834R-XFF4834R_chr32100 XFF4834R_chr32100




    

         
             
            XFF4834R_chr32090
            
XFF4834R_chr32090
            
        		


       
           
	   Cluster
	   
DrawMap
	   
        		
	
        
            XML file
        	


	    FASTA file
        		
	
	
             
            Extract
Sequence
            
        		
	
	
             
            Codon
Usage
            
        		
    
    
            
            Framed
            
     
  	



	
            OrthoMCL
            
    
  	
    
    
    

     


	
             
            XFF4834R_chr32110
            
XFF4834R_chr32110
            
        		

    





    

        ID
        XFF4834R_chr34700026_3688624_r3_XFF4834R-XFF4834R_chr32100
    

    

        AC
        XFF4834R_chr32100
    

    

        LT
        XFF4834R_chr32100
    

    

        OR
        XFF4834R_chr from 3687026 to 3688624 on strand -
    

   

        DE
        putative MobA/MobL protein
  

   

        IP
        MobA/MobL protein
  
  
  
  

        CL
        8.2.2 plasmid transfer	GO:0009291 
    

  

        EC
        
    

    
    

        GO
        
            InterPro
Biological Process: unidirectional conjugation (GO:0009291)


            Curated

        		
    


  

        PM
        
    

  

        AN
        Mobilization protein A (DNA strand transferase) /Mobilization protein mobB (Protein C)
    

  

        CC
        COG: [L] Replication, recombination and repair; 
    

    

        CC
        MODEL: XFF4834R 
  
    
  

        CC
        STATUS: curated by pieretti (20101103)
  

  
  


    

        MW
        59019 Da
    


    

        SQ
        532 aa
    

    

         
        
........10........20........30........40........50
         |         |         |         |         |
MAIYHSRVKVFSRSRGDSAVAAAAYRGGLLLIDHLTGQRHDYRRRGGVVA
SECLAPEDAPAWALVPAELWPKAEEAENRKNSVVAREFEVALPHELNDEQ
RTELTMAIGQALVARYGFAVQASIHSPGSRDGLNHHVHLLATTRRLTSEG
FAEKTRELDGGASGKIEIEWIRQTIASTINGHLAAAGIDARVDHRRLEVQ
AEDALARGDWVEAMVLSRQPTKHMGKTATALARKGVMTERAAENARIVRE
NEEAFERLLAQAELEGRAAPNPTGHSHDQARRDRRRRAGSTNDLQSSVPG
LEIHGLRGMRLSDALGRPAEDARVRPLRPISELIAEAAQNLAEILSTRSD
LALTATQRVVRQWTSHAAALRDGVDLRRWLNGLVEGLGRLKRSVLKFAQG
MRNVGRAERLFHLAEQAWEQFNGDHPRPDGEWASQEWEKRRGRRLAVLEK
RTAELAAARAAVSEQHWNDYENEIEIRAAQVEQWSEEVLASPELAIASRS
IKSVKAAPAAPEPSPMPMPMPAPQPTRRRPRP

    






    

        
            
                XFF4834R
            
                
        
XFF4834R_chr13750 lcl|XFF4834R_chr_1573496_1575136_f2_XFF4834R-XFF4834R_chr13750

        
1

	
238

	
S=554 I=49 E=1.97481e-60

	

     	

   





    

        
            
                XFF4834R
            
                
        
XFF4834R_chr13700 lcl|XFF4834R_chr_1570777_1571667_f1_XFF4834R-XFF4834R_chr13700

        
1

	
197

	
S=537 I=56 E=2.4093e-58

	

     	

   





    

        
            
                XFF4834R
            
                
        
NP_643568.1 lcl|mobL-XAC3260

        
1

	
505

	
S=2156 I=85 E=0

	
plasmid mobilization protein

     	

   





    

        
            
                XFF4834R
            
                
        
YP_362854.1 lcl|XCV1123

        
1

	
489

	
S=1073 I=50 E=1.02192e-122

	
MobA/MobL family protein

     	

   





    

        
            
                XFF4834R
            
                
        
YP_365109.1 lcl|XCV3378

        
1

	
489

	
S=1041 I=49 E=7.31273e-119

	
putative MobA/MobL family protein

     	

   





    

        
            
                XFF4834R
            
                
        
NP_641442.1 lcl|mobL-XAC1104

        
11

	
489

	
S=1009 I=49 E=6.39486e-115

	
plasmid mobilization protein

     	

   





    

        
            
                XFF4834R
            
                
        
NP_641841.1 lcl|mobL-XAC1507

        
1

	
280

	
S=532 I=43 E=3.77171e-57

	
plasmid mobilization protein

     	

   





    

        
            
                XFF4834R
            
                
        
YP_362824.1 lcl|XCV1093

        
1

	
270

	
S=446 I=44 E=9.18166e-47

	
putative MobA/MobL family protein

     	

   





    

        
            
                XFF4834R
            
                
        
YP_361502.1 lcl|XCVb0008

        
1

	
251

	
S=368 I=40 E=2.85555e-37

	
MobA/MobL family plasmid mobilization protein

     	

   





    

        
                pubmed
        
        

        
1

	
260

	
S=416 I=42 E=1.54651e-41

	
TraA ; Plasmid

	
Pubmed 16672515

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
1

	
192

	
S=397 I=48 E=3.78999e-39

	
ORF237 ; Plasmid

	
Pubmed 16269793

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
1

	
201

	
S=396 I=46 E=4.59136e-39

	
ORF504 ; Plasmid

	
Pubmed 16269793

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
1

	
253

	
S=376 I=39 E=1.2277e-36

	
Putative mobilization protein ; Plasmid

	
Pubmed 16828160

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
2

	
199

	
S=351 I=48 E=1.40795e-33

	
Mobilization protein ; Plasmid

	
Pubmed 12570988

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
1

	
240

	
S=343 I=44 E=1.083e-32

	
TraA ; Plasmid

	
Pubmed 14702321

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
1

	
240

	
S=338 I=41 E=4.68557e-32

	
TraA ; Plasmid

	
Pubmed 18413319

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
1

	
253

	
S=336 I=37 E=7.90592e-32

	
MobA ; Plasmid

	
Pubmed 6368743,3011960

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
1

	
200

	
S=325 I=40 E=1.99049e-30

	
TraA protein ; Plasmid

	
Pubmed 17881053

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
1

	
252

	
S=300 I=34 E=1.85174e-27

	
RepB/MobA-like protein ; Plasmid

	
Pubmed 11400063

    

    

         
        
prodomImg

    





    

        
            
                sp_Pdown
            
        
        
sp|P20085|MOBL_THIFE

        
1

	
266

	
S=254 I=34 E=4.53291e-22

	
Mobilization protein mobL ; Conjugation Mobility Plasmid

    





    

        
            
                sp_Pdown
            
        
        
sp|Q44349|TRAA_AGRT5

        
1

	
234

	
S=214 I=32 E=3.21285e-17

	
Conjugal transfer protein traA ; ATP-binding Conjugation Nucleotide-binding Plasmid

    





    

        
            
                sp_Pdown
            
        
        
sp|P55418|TRAA_RHISN

        
1

	
253

	
S=209 I=31 E=1.59811e-16

	
Probable conjugal transfer protein traA ; ATP-binding Conjugation Nucleotide-binding Plasmid

    





    

        Iprscan
        
	[coil]
	
245

	
266

	
	
-

    





    

        Iprscan
        IPR005053
	[PF03389]
	
17

	
234

	
	
MobA/MobL protein

    





    

        Iprscan
        
	[seg]
	
281

	
287

	
	
-

    





    

        Iprscan
        
	[seg]
	
453

	
461

	
	
-

    





    

        Iprscan
        
	[seg]
	
506

	
532

	
	
-

    





    

        
            
                
            
                
        
PD606449

        
251

	
489

	
S=598 I=52 E=7.21792e-65

    	
    





    

        
            
                
            
                
        
PDA1G0P2

        
5

	
86

	
S=179 I=55 E=3.99361e-14

    	
    





    

        
            
                
            
                
        
PD674890

        
164

	
326

	
S=151 I=31 E=1.11451e-10

    	
    





    

        
            
                
            
                
        
PDA4I6I5

        
81

	
127

	
S=135 I=53 E=8.49138e-09

    	
    





    

        
            
                
            
                
        
PD024358

        
126

	
241

	
S=135 I=35 E=9.84802e-09

    	
    





    

        
            
                
            
                
        
PD007732

        
79

	
150

	
S=127 I=40 E=9.66971e-08

    	
    




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                pubmed
            
        
	    
            
Set of Uniprot with relevant PubMed cross-references ncbi-blastp

        		
 	    
            52 hits
        
    

    

        
            
                swiss-prot
            
        
	    
            
Swiss-Prot ncbi-blastp

        		
 	    
            7 hits
        
    

    
    
    

        
            
                XFF4834R
            
        
    	
            
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp

        		        
        
            2 hits
        
    

        
    

        
            
                hamap
            
        
	
            
HAMAP scan

        		        
        
            0 hits
        
    

    
    

	    
            
                Interpro Scan
            
            
	        
                
IprScan

            		        
            
                5 hits
            
    








Show or not Miscellaneous analyses




    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetLocalBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBkWj5Qy/XFF4834R_chr32100.xml_fasta", "https://iant.toulouse.inra.fr/bacteria/annotation/web/img/XFF4834R.png"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    
    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetNcbiBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBkWj5Qy/XFF4834R_chr32100.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetUniprotBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBkWj5Qy/XFF4834R_chr32100.xml_fasta"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetKeggBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBkWj5Qy/XFF4834R_chr32100.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    

    






XFF4834R_pla00310044_0033646_r2_XFF4834R-XFF4834R_pla00410 XFF4834R_pla00410




    

         
             
            XFF4834R_pla00400
            
XFF4834R_pla00400
            
        		


       
           
	   Cluster
	   
DrawMap
	   
        		
	
        
            XML file
        	


	    FASTA file
        		
	
	
             
            Extract
Sequence
            
        		
	
	
             
            Codon
Usage
            
        		
    
    
            
            Framed
            
     
  	



	
            OrthoMCL
            
    
  	
    
    
    

     


	
             
            XFF4834R_pla00420
            
XFF4834R_pla00420
            
        		

    





    

        ID
        XFF4834R_pla00310044_0033646_r2_XFF4834R-XFF4834R_pla00410
    

    

        AC
        XFF4834R_pla00410
    

    

        LT
        XFF4834R_pla00410
    

    

        OR
        XFF4834R_pla from 33044 to 33646 on strand -
    

   

        DE
        putative lytic transglycosylase
  

   

        IP
        Lytic transglycosylase-like, catalytic
  
  
  
  

        CL
        8.2.2 plasmid transfer	GO:0009291 
    

  

        EC
        
    

    
    

        GO
        
            InterPro



            Curated

        		
    


  

        PM
        
    

  

        AN
        for CL : 39% identity (on about 80% of the two sequences) with conjugal transfer protein TRWN in E.coli and signature prodom TRWN. 
    

  

        CC
        COG: [M] Cell wall/membrane/envelope biogenesis; 
    

    

        CC
        MODEL: XFF4834R 
  
    
  

        CC
        STATUS: curated by irobene (20100823)
  

  
  


    

        MW
        21230 Da
    


    

        SQ
        200 aa
    

    

         
        
........10........20........30........40........50
         |         |         |         |         |
MEPIMSDLMSLILACSIGVHPQTVQAIITHESGGNPYAINNQARSFYPTR
LEDAQRIAVEQVRAGRSTDIGLMQINSQHLDKLGLTPIDLLDPCTNIRVG
TTILGQNYAQTWAKYRAEKPALLGALSMYNTGNESRGLRNGYVGWVSQAA
GVTVNLPSGVRVSGRRSTKAQSNAVSVVSPAAAPTGFAGTGPKAAKQGPR

    





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                pubmed
            
        
	    
            
Set of Uniprot with relevant PubMed cross-references ncbi-blastp

        		
 	    
            46 hits
        
    

    

        
            
                swiss-prot
            
        
	    
            
Swiss-Prot ncbi-blastp

        		
 	    
            7 hits
        
    

    
    
    

        
            
                XFF4834R
            
        
    	
            
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp

        		        
        
            1 hits
        
    

        
    

        
            
                hamap
            
        
	
            
HAMAP scan

        		        
        
            0 hits
        
    

    
    

	    
            
                Interpro Scan
            
            
	        
                
IprScan

            		        
            
                4 hits
            
    








Show or not Miscellaneous analyses




    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetLocalBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBkWj5Qy/XFF4834R_pla00410.xml_fasta", "https://iant.toulouse.inra.fr/bacteria/annotation/web/img/XFF4834R.png"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    
    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetNcbiBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBkWj5Qy/XFF4834R_pla00410.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetUniprotBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBkWj5Qy/XFF4834R_pla00410.xml_fasta"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetKeggBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBkWj5Qy/XFF4834R_pla00410.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    

    






XFF4834R_pla00310627_0034163_r1_XFF4834R-XFF4834R_pla00420 XFF4834R_pla00420




    

         
             
            XFF4834R_pla00410
            
XFF4834R_pla00410
            
        		


       
           
	   Cluster
	   
DrawMap
	   
        		
	
        
            XML file
        	


	    FASTA file
        		
	
	
             
            Extract
Sequence
            
        		
	
	
             
            Codon
Usage
            
        		
    
    
            
            Framed
            
     
  	



	
            OrthoMCL
            
    
  	
    
    
    

     


	
             
            XFF4834R_pla00430
            
XFF4834R_pla00430
            
        		

    





    

        ID
        XFF4834R_pla00310627_0034163_r1_XFF4834R-XFF4834R_pla00420
    

    

        AC
        XFF4834R_pla00420
    

    

        LT
        XFF4834R_pla00420
    

    

        OR
        XFF4834R_pla from 33627 to 34163 on strand -
    

   

        DE
        putative conjugal transfer protein TraF; peptidase
  

   

        IP
        Peptidase S24/S26A/S26B/S26C
  
  
  
  

        CL
        8.2.2 plasmid transfer	GO:0009291 
    

  

        EC
        
    

    
    

        GO
        
            InterPro
Biological Process: proteolysis (GO:0006508)
Cellular Component: membrane (GO:0016020)
Molecular Function: serine-type peptidase activity (GO:0008236)


            Curated

        		
    


  

        PM
        
    

  

        AN
        better coding probability with ACUR matrix
    

  

        CC
        COG: [OU] Posttranslational modification, protein turnover, chaperones;Intracellular trafficking, secretion, and vesicular transport; 
    

    

        CC
        MODEL: XFF4834R 
  
    
  

        CC
        STATUS: curated by lnoel (20100802)
  

  
  


    

        MW
        18857.4 Da
    


    

        SQ
        178 aa
    

    

         
        
........10........20........30........40........50
         |         |         |         |         |
MAPALGWASARILSAFGFTVIANLSPSVAQGMYLLDRNVRSAERGQLVAF
PPHNAPARYGFERGWMKPGSLYIKRVGAIAGDTVCVNVEVTIATPTTPGH
PATFTRVGAVSATDHTGVPLPHALQGCHRVPAGHIFPIGDGLANSYDGRY
YGFVPVTLIAGRITPIWTQAQPDGADHE

    






    

        
                pubmed
        
        

        
23

	
168

	
S=141 I=34 E=8.98431e-09

	
Tiorf110 protein ; Plasmid

	
Pubmed 10721727,9524202

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
23

	
168

	
S=130 I=31 E=1.74139e-07

	
Conjugal transfer protein traF ; Conjugation Periplasm Plasmid Signal

	
Pubmed 8763953

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
12

	
169

	
S=124 I=32 E=1.0961e-06

	
TraF ; Plasmid

	
Pubmed 20376355

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
23

	
170

	
S=119 I=33 E=4.30854e-06

	
Riorf113 protein ; Plasmid

	
Pubmed 11273700,10907845

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
17

	
170

	
S=113 I=29 E=1.93023e-05

	
Probable conjugal transfer protein TraF ; Plasmid

	
Pubmed 12591886

    

    

         
        
prodomImg

    





    

        
            
                sp_Pdown
            
        
        
sp|Q44350|TRAF_AGRT5

        
23

	
168

	
S=130 I=31 E=1.1964e-07

	
Conjugal transfer protein traF ; Conjugation Periplasm Plasmid Signal

    





    

        
            
                sp_Pdown
            
        
        
sp|P55417|TRAF_RHISN

        
23

	
170

	
S=111 I=31 E=2.29689e-05

	
Probable conjugal transfer protein traF ; Conjugation Periplasm Plasmid Signal

    





    

        Iprscan
        IPR000223
	[PR00727]
	
72

	
84

	
	
Peptidase S26A, signal peptidase I

    





    

        Iprscan
        IPR000223
	[PR00727]
	
130

	
149

	
	
Peptidase S26A, signal peptidase I

    





    

        Iprscan
        IPR011056
	[G3DSA:2.10.109.10]
	
38

	
171

	
	
Peptidase S24/S26A/S26B/S26C, beta-ribbon domain

    





    

        Iprscan
        
	[PTHR12383:SF2]
	
67

	
163

	
	
-

    





    

        Iprscan
        
	[PTHR12383]
	
67

	
163

	
	
-

    





    

        Iprscan
        IPR019533
	[PF10502]
	
21

	
168

	
	
Peptidase S26, conserved region

    





    

        Iprscan
        
	[SignalP-NN(euk)]
	
1

	
31

	
	
-

    





    

        Iprscan
        
	[tmhmm]
	
12

	
34

	
	
-

    





    

        
            
                
            
                
        
PD854894

        
32

	
167

	
S=127 I=31 E=6.42029e-08

    	
    





    

        
            
                
            
                
        
PD010845

        
20

	
128

	
S=109 I=34 E=9.8258e-06

    	
    





    

        Iprscan
        IPR015927
	[SSF51306]
	
38

	
167

	
	
Peptidase S24/S26A/S26B/S26C

    




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                pubmed
            
        
	    
            
Set of Uniprot with relevant PubMed cross-references ncbi-blastp

        		
 	    
            6 hits
        
    

    

        
            
                swiss-prot
            
        
	    
            
Swiss-Prot ncbi-blastp

        		
 	    
            2 hits
        
    

    
    
    

        
            
                XFF4834R
            
        
    	
            
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp

        		        
        
            0 hits
        
    

        
    

        
            
                hamap
            
        
	
            
HAMAP scan

        		        
        
            0 hits
        
    

    
    

	    
            
                Interpro Scan
            
            
	        
                
IprScan

            		        
            
                9 hits
            
    








Show or not Miscellaneous analyses




    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetLocalBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBkWj5Qy/XFF4834R_pla00420.xml_fasta", "https://iant.toulouse.inra.fr/bacteria/annotation/web/img/XFF4834R.png"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    
    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetNcbiBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBkWj5Qy/XFF4834R_pla00420.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetUniprotBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBkWj5Qy/XFF4834R_pla00420.xml_fasta"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetKeggBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBkWj5Qy/XFF4834R_pla00420.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    

    






XFF4834R_plb00150146_0018874_r2_XFF4834R-XFF4834R_plb00190 XFF4834R_plb00190




    

         
             
            XFF4834R_plb_0021
            
XFF4834R_plb_0021
            
        		


       
           
	   Cluster
	   
DrawMap
	   
        		
	
        
            XML file
        	


	    FASTA file
        		
	
	
             
            Extract
Sequence
            
        		
	
	
             
            Codon
Usage
            
        		
    
    
            
            Framed
            
     
  	



	
            OrthoMCL
            
    
  	
    
    
    

     


	
             
            XFF4834R_plb00200
            
XFF4834R_plb00200
            
        		

    





    

        ID
        XFF4834R_plb00150146_0018874_r2_XFF4834R-XFF4834R_plb00190
    

    

        AC
        XFF4834R_plb00190
    

    

        LT
        XFF4834R_plb00190
    

    

        OR
        XFF4834R_plb from 18146 to 18874 on strand -
    

   

        DE
        putative protein TraL
  

   

        IP
        
  
  
  
  

        CL
        8.2.2 plasmid transfer	GO:0009291 
    

  

        EC
        
    

    
    

        GO
        
            InterPro



            Curated

        		
    


  

        PM
        
    

  

        AN
        
    

  

        CC
        COG: [R] General function prediction only; 
    

    

        CC
        MODEL: XFF4834R 
  
    
  

        CC
        STATUS: curated by darrasse (20120313)
  

  
  


    

        MW
        27056.6 Da
    


    

        SQ
        242 aa
    

    

         
        
........10........20........30........40........50
         |         |         |         |         |
MQNTIHFILQGKGGIGKSFIAVMLAQFFKSKGADLKAFDTDQENTTFAHY
KALGAQHIPVMNESRTIDAKRFDALMEKLLTEDGTFVIDNGANTFSPLLA
YMVENNVISFLNENDKKVYLHTVVGGGDTLADTANGFNSIAQGIEDAPVV
LWLNEHFGPMKTDEGKDFTDTKVFKANQSRLHGVVSLQARNHQTYGDDIK
KMNTKRLTVDEIMQSPDFALMEKQRIRNVAKDVFGQLDKIEF

    






    

        
                pubmed
        
        

        
5

	
238

	
S=492 I=42 E=3.315e-51

	
TraL ; Plasmid

	
Pubmed 15489427

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
5

	
238

	
S=467 I=40 E=3.93663e-48

	
TraL ; Plasmid

	
Pubmed 15580337,16517619

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
5

	
238

	
S=465 I=40 E=6.93822e-48

	
TraL ; Plasmid

	
Pubmed 16445980

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
5

	
238

	
S=464 I=41 E=9.8335e-48

	
TraL

	
Pubmed 11923356

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
5

	
238

	
S=460 I=39 E=2.5658e-47

	
TraL protein ; Plasmid

	
Pubmed 17132149

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
5

	
238

	
S=460 I=40 E=3.21864e-47

	
TraL protein ; Plasmid

	
Pubmed 12589432

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
5

	
238

	
S=454 I=39 E=1.49313e-46

	
TraL origin of transfer (OriT) protein ; Plasmid

	
Pubmed 15528648

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
5

	
238

	
S=454 I=39 E=1.49313e-46

	
TraL protein ; Plasmid

	
Pubmed 16122561

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
5

	
238

	
S=454 I=39 E=1.49313e-46

	
TraL protein ; Plasmid

	
Pubmed 16980416

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
5

	
238

	
S=453 I=40 E=2.2105e-46

	
TraL protein ; Plasmid

	
Pubmed 8014987,17320955

    

    

         
        
prodomImg

    





    

        
            
                sp_Pdown
            
        
        
sp|Q00188|TRAL4_ECOLX

        
5

	
238

	
S=453 I=40 E=1.52558e-46

	
Protein traL ; Conjugation Plasmid

    





    

        
            
                sp_Pdown
            
        
        
sp|Q00187|TRAL5_ECOLX

        
5

	
238

	
S=453 I=39 E=1.57973e-46

	
Protein traL ; Conjugation Plasmid

    





    

        
            
                
            
                
        
PD987744

        
81

	
240

	
S=387 I=46 E=2.13569e-39

    	
    





    

        
            
                
            
                
        
PD038621

        
4

	
41

	
S=128 I=61 E=4.64145e-08

    	
    





    

        
            
                
            
                
        
PD463914

        
2

	
156

	
S=110 I=26 E=6.68285e-06

    	
    




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                pubmed
            
        
	    
            
Set of Uniprot with relevant PubMed cross-references ncbi-blastp

        		
 	    
            18 hits
        
    

    

        
            
                swiss-prot
            
        
	    
            
Swiss-Prot ncbi-blastp

        		
 	    
            2 hits
        
    

    
    
    

        
            
                XFF4834R
            
        
    	
            
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp

        		        
        
            0 hits
        
    

        
    

        
            
                hamap
            
        
	
            
HAMAP scan

        		        
        
            0 hits
        
    

    
    

	    
            
                Interpro Scan
            
            
	        
                
IprScan

            		        
            
                0 hits
            
    








Show or not Miscellaneous analyses




    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetLocalBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBkWj5Qy/XFF4834R_plb00190.xml_fasta", "https://iant.toulouse.inra.fr/bacteria/annotation/web/img/XFF4834R.png"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    
    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetNcbiBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBkWj5Qy/XFF4834R_plb00190.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetUniprotBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBkWj5Qy/XFF4834R_plb00190.xml_fasta"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetKeggBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBkWj5Qy/XFF4834R_plb00190.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    

    






XFF4834R_plb00150884_0019273_r2_XFF4834R-XFF4834R_plb00200 XFF4834R_plb00200




    

         
             
            XFF4834R_plb00190
            
XFF4834R_plb00190
            
        		


       
           
	   Cluster
	   
DrawMap
	   
        		
	
        
            XML file
        	


	    FASTA file
        		
	
	
             
            Extract
Sequence
            
        		
	
	
             
            Codon
Usage
            
        		
    
    
            
            Framed
            
     
  	



	
            OrthoMCL
            
    
  	
    
    
    

     


	
             
            XFF4834R_plb00010
            
XFF4834R_plb00010
            
        		

    





    

        ID
        XFF4834R_plb00150884_0019273_r2_XFF4834R-XFF4834R_plb00200
    

    

        AC
        XFF4834R_plb00200
    

    

        LT
        XFF4834R_plb00200
    

    

        OR
        XFF4834R_plb from 18884 to 19273 on strand -
    

   

        DE
        putative TraD protein
  

   

        IP
        
  
  
  
  

        CL
        8.2.2 plasmid transfer	GO:0009291 
    

  

        EC
        
    

    
    

        GO
        
            InterPro



            Curated

        		
    


  

        PM
        
    

  

        AN
        
    

  

        CC
        COG: [O] Posttranslational modification, protein turnover, chaperones; 
    

    

        CC
        MODEL: XFF4834R 
  
    
  

        CC
        STATUS: curated by lnoel (20100802)
  

  
  


    

        MW
        13834.5 Da
    


    

        SQ
        129 aa
    

    

         
        
........10........20........30........40........50
         |         |         |         |         |
MTKTSVADVLRELAKGENSRSETARLRDVIDEVEAAIAAGVSRSAVLKAL
HGQGFTMTLKSFESALYRIRKQRGQGAAAAPIAPPTTPLRHDEQGGEVAS
AASKKAGDFEIPVPKRFTHNPKPDDDLLK

    






    

        
            
                XFF4834R
            
                
        
XFF4834R_plc00150 lcl|XFF4834R_plc00080215_0009661_r1_XFF4834R-XFF4834R_plc00150

        
21

	
76

	
S=111 I=39 E=1.47115e-07

	

     	

   





    

        
            
                XFF4834R
            
                
        
YP_361530.1 lcl|XCVc0014

        
21

	
72

	
S=110 I=40 E=7.14865e-07

	
putative TraD protein

     	

   





    

        
            
                XFF4834R
            
                
        
NP_644752.1 lcl|XACb0024-XACb0024

        
20

	
72

	
S=96 I=38 E=3.31349e-05

	
hypothetical protein

     	

   





    

        
            
                XFF4834R
            
                
        
NP_644699.1 lcl|XACa0013-XACa0013

        
20

	
72

	
S=96 I=38 E=3.31349e-05

	
hypothetical protein

     	

   





    

        
                pubmed
        
        

        
8

	
71

	
S=145 I=45 E=1.13443e-09

	
Putative uncharacterized protein ; Plasmid

	
Pubmed 15262947

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
20

	
75

	
S=131 I=43 E=6.83024e-08

	
YciA protein ; Plasmid

	
Pubmed 1400257

    

    

         
        
prodomImg

    





    

        Iprscan
        
	[seg]
	
77

	
88

	
	
-

    





    

        
            
                
            
                
        
PD538578

        
1

	
73

	
S=179 I=45 E=2.81625e-14

    	
    




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ID


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EC


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CC


CL

 
  Your email  
 
  Validation code (copy this one abWcf3i4)  
 
     



Show or not Access unfiltered results






    

       
            
                pubmed
            
        
	    
            
Set of Uniprot with relevant PubMed cross-references ncbi-blastp

        		
 	    
            2 hits
        
    

    

        
            
                swiss-prot
            
        
	    
            
Swiss-Prot ncbi-blastp

        		
 	    
            0 hits
        
    

    
    
    

        
            
                XFF4834R
            
        
    	
            
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp

        		        
        
            1 hits
        
    

        
    

        
            
                hamap
            
        
	
            
HAMAP scan

        		        
        
            0 hits
        
    

    
    

	    
            
                Interpro Scan
            
            
	        
                
IprScan

            		        
            
                1 hits
            
    








Show or not Miscellaneous analyses




    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetLocalBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBkWj5Qy/XFF4834R_plb00200.xml_fasta", "https://iant.toulouse.inra.fr/bacteria/annotation/web/img/XFF4834R.png"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    
    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetNcbiBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBkWj5Qy/XFF4834R_plb00200.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetUniprotBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBkWj5Qy/XFF4834R_plb00200.xml_fasta"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetKeggBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBkWj5Qy/XFF4834R_plb00200.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    

    






 XFF4834R_plc00150




    

         
             
            XFF4834R_plc00140
            
XFF4834R_plc00140
            
        		


       
           
	   Cluster
	   
DrawMap
	   
        		
	
        
            XML file
        	


	    FASTA file
        		
	
	
             
            Extract
Sequence
            
        		
	
	
             
            Codon
Usage
            
        		
    
    
            
            Framed
            
     
  	



	
            OrthoMCL
            
    
  	
    
    
    

     


	
             
            XFF4834R_plc00160
            
XFF4834R_plc00160
            
        		

    





    

        ID
        
    

    

        AC
        XFF4834R_plc00150
    

    

        LT
        XFF4834R_plc00150
    

    

        OR
        XFF4834R_plc from 8215 to 8661 on strand -
    

   

        DE
        Putative plasmid transfer protein TraD
  

   

        IP
        
  
  
  
  

        CL
        8.2.2 plasmid transfer	GO:0009291 
    

  

        EC
        
    

    
    

        GO
        
            InterPro



            Curated

        		
    


  

        PM
        
    

  

        AN
        
    

  

        CC
        COG: [S] Function unknown; 
    

    

        CC
        MODEL: XFF4834R 
  
    
  

        CC
        STATUS: curated by szurek (20101122)
  

  
  


    

        MW
        16276.1 Da
    


    

        SQ
        148 aa
    

    

         
        
........10........20........30........40........50
         |         |         |         |         |
MDVDVNKLKQSITELTGGTKAAKLRRVMPEIEEKLDQGVRHEEIVAALHA
GGLDVTLETFRKTLYRYRAQRAGGTKETPPKAVRATTADGNPQVRADAPT
EDLTADDAAGDAPTSTSFDDALDRRKRDQVGESYLTRRKPIIGKKRTT

    






    

        
            
                XFF4834R
            
                
        
XFF4834R_plb00200 lcl|XFF4834R_plb00150884_0019273_r2_XFF4834R-XFF4834R_plb00200

        
19

	
74

	
S=111 I=39 E=1.86478e-07

	

     	

   





    

        
            
                XFF4834R
            
                
        
XFF4834R_chr42480 lcl|XFF4834R_chr_4929380_4929763_r3_XFF4834R-XFF4834R_chr42480

        
24

	
76

	
S=109 I=42 E=3.64912e-07

	

     	

   





    

        
            
                XFF4834R
            
                
        
 lcl|stbA-XALq_3212

        
1

	
148

	
S=534 I=79 E=4.00859e-58

	
putative stable plasmid inheritance protein

     	

   





    

        
            
                XFF4834R
            
                
        
YP_361530.1 lcl|XCVc0014

        
9

	
114

	
S=148 I=36 E=2.07541e-11

	
putative TraD protein

     	

   





    

        
            
                XFF4834R
            
                
        
NP_644752.1 lcl|XACb0024-XACb0024

        
8

	
76

	
S=142 I=43 E=1.23976e-10

	
hypothetical protein

     	

   





    

        
            
                XFF4834R
            
                
        
NP_644699.1 lcl|XACa0013-XACa0013

        
8

	
76

	
S=142 I=43 E=1.23976e-10

	
hypothetical protein

     	

   





    

        
                pubmed
        
        

        
19

	
145

	
S=234 I=45 E=3.12611e-20

	
StbA ; Plasmid

	
Pubmed 18268088

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
19

	
145

	
S=234 I=45 E=3.1811e-20

	
Putative uncharacterized protein ; Plasmid

	
Pubmed 14645321

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
19

	
145

	
S=233 I=45 E=3.26541e-20

	
Conserved hypothetical plasmid protein

	
Pubmed 18268088

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
19

	
145

	
S=227 I=44 E=1.85119e-19

	
StbA ; Plasmid

	
Pubmed 18268088

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
19

	
145

	
S=221 I=43 E=1.17541e-18

	
Putative uncharacterized protein ; Plasmid

	
Pubmed 16391056,7022127

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
19

	
87

	
S=147 I=46 E=9.71427e-10

	
Putative TraD protein ; Plasmid

	
Pubmed 12534468

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
19

	
78

	
S=145 I=48 E=1.8358e-09

	
Putative plasmid transfer protein TraD

	
Pubmed 16707697,2175388

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
19

	
94

	
S=137 I=37 E=1.59543e-08

	
Putative TraD protein ; Plasmid

	
Pubmed 15288784

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
19

	
94

	
S=137 I=37 E=1.59543e-08

	
Putative TraD protein ; Plasmid

	
Pubmed 10719200

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
19

	
72

	
S=121 I=44 E=1.53818e-06

	
YciA protein ; Plasmid

	
Pubmed 1400257

    

    

         
        
prodomImg

    





    

        
            
                
            
                
        
PD538578

        
19

	
71

	
S=138 I=47 E=3.14437e-09

    	
    





    

        
            
                
            
                
        
PDA4O2L0

        
24

	
121

	
S=107 I=30 E=1.58758e-05

    	
    




Show or not Suggestions
Suggest an annotation


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ID


DE


EC


GO


PM



CC


CL

 
  Your email  
 
  Validation code (copy this one qChgtVOt)  
 
     



Show or not Access unfiltered results






    

       
            
                pubmed
            
        
	    
            
Set of Uniprot with relevant PubMed cross-references ncbi-blastp

        		
 	    
            10 hits
        
    

    

        
            
                swiss-prot
            
        
	    
            
Swiss-Prot ncbi-blastp

        		
 	    
            0 hits
        
    

    
    
    

        
            
                XFF4834R
            
        
    	
            
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp

        		        
        
            2 hits
        
    

        
    

        
            
                hamap
            
        
	
            
HAMAP scan

        		        
        
            0 hits
        
    

    
    

	    
            
                Interpro Scan
            
            
	        
                
IprScan

            		        
            
                0 hits
            
    








Show or not Miscellaneous analyses




    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetLocalBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBkWj5Qy/XFF4834R_plc00150.xml_fasta", "https://iant.toulouse.inra.fr/bacteria/annotation/web/img/XFF4834R.png"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    
    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetNcbiBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBkWj5Qy/XFF4834R_plc00150.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetUniprotBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBkWj5Qy/XFF4834R_plc00150.xml_fasta"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetKeggBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBkWj5Qy/XFF4834R_plc00150.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    •