10 hits
| XFF4834R_chr42420 | XFF4834R_chr_4924899_4926086_f3_XFF4834R-XFF4834R_chr42420 | XFF4834R_chr42420 | putative zeta toxin of the postsegregational killing system |
| XFF4834R_chr42510 | XFF4834R_chr_4930931_4931224_f2_XFF4834R-XFF4834R_chr42510 | XFF4834R_chr42510 | putative plasmid stabilisation system protein |
| XFF4834R_pla00180 | XFF4834R_pla00110109_0012363_f1_XFF4834R-XFF4834R_pla00180 | XFF4834R_pla00180 | putative plasmid stability protein |
| XFF4834R_pla00190 | XFF4834R_pla00110360_0012776_f3_XFF4834R-XFF4834R_pla00190 | XFF4834R_pla00190 | putative plasmid stability protein |
| XFF4834R_pla00450 | XFF4834R_pla00450 | Putative plasmid partitioning protein |
| XFF4834R_plb00030 | XFF4834R_plb00030 | Putative plasmid partitioning protein |
| XFF4834R_plb00100 | XFF4834R_plb00100 | Putative replication protein RepA |
| XFF4834R_plc00140 | StbB | XFF4834R_plc00140 | probable plasmid stability protein |
| XFF4834R_plc00400 | XFF4834R_plc00400 | Putative replication protein |
| XFF4834R_plc00420 | XFF4834R_plc_0036006_0036590_f3_XFF4834R-XFF4834R_plc00420 | XFF4834R_plc00420 | Probable KrfA protein |
XFF4834R_chr42410 |
DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
|
|
XFF4834R_chr42430 |
| ID | XFF4834R_chr_4924899_4926086_f3_XFF4834R-XFF4834R_chr42420 |
| AC | XFF4834R_chr42420 |
| LT | XFF4834R_chr42420 |
| OR | XFF4834R_chr from 4924899 to 4926086 on strand + |
| DE | putative zeta toxin of the postsegregational killing system |
| IP | |
| CL | 8.2.1 replication and maintenance GO:0006261 GO:0006276 |
| EC | |
| GO |
InterPro Curated |
| PM | |
| AN | |
| CC | COG: [O] Posttranslational modification, protein turnover, chaperones; |
| CC | MODEL: XFF4834R |
| CC | STATUS: curated by lnoel (20100802) |
| MW | 45701.9 Da |
| SQ | 395 aa |
........10........20........30........40........50 |
|
YP_361658.1 lcl|XCVd0099 |
1 |
395 |
S=1712 I=83 E=0 |
putative zeta toxin of the postsegregational killing system |
|
|
NP_644785.1 lcl|XACb0057-XACb0057 |
1 |
395 |
S=1712 I=83 E=0 |
hypothetical protein |
|
|
NP_638807.2 lcl|XCC3461 |
1 |
215 |
S=261 I=29 E=1.87804e-24 |
hypothetical protein |
|
6 |
225 |
S=358 I=34 E=1.45497e-34 |
Putative uncharacterized protein ; Plasmid |
||
|
||||||
|
|
31 |
215 |
S=230 I=31 E=4.91261e-19 |
Zeta-toxin ; ATP-binding Nucleotide-binding Plasmid |
Pubmed 12195739 |
|
|
||||||
|
|
32 |
215 |
S=226 I=31 E=1.41085e-18 |
Toxin of epsilon-zeta postsegregational killing system ; Plasmid |
Pubmed 8093174 |
|
|
||||||
|
|
32 |
215 |
S=226 I=31 E=1.41085e-18 |
Zeta-toxin ; ATP-binding Nucleotide-binding Plasmid |
||
|
||||||
|
|
32 |
215 |
S=224 I=31 E=2.16281e-18 |
Zeta toxin ; Plasmid |
Pubmed 18511120 |
|
|
||||||
|
31 |
215 |
S=230 I=31 E=3.34086e-19 |
Zeta-toxin ; ATP-binding Nucleotide-binding Plasmid |
||
|
||||||
|
|
32 |
215 |
S=226 I=31 E=9.59456e-19 |
Zeta-toxin ; ATP-binding Nucleotide-binding Plasmid |
||
|
||||||
|
|
26 |
215 |
S=223 I=30 E=2.17749e-18 |
Zeta-toxin ; ATP-binding Nucleotide-binding Plasmid |
||
|
||||||
|
|
26 |
215 |
S=223 I=30 E=2.17749e-18 |
Zeta-toxin ; ATP-binding Nucleotide-binding Plasmid |
||
|
||||||
 |
[G3DSA:3.40.50.300] | 2 |
298 |
- |
|
[PF06414] | 22 |
217 |
- |
|
[seg] | 226 |
246 |
- |
|
[seg] | 257 |
277 |
- |
|
20 |
225 |
S=491 I=49 E=5.23297e-52 |
|
|
279 |
395 |
S=247 I=48 E=1.93895e-22 |
|
|
1 |
147 |
S=208 I=35 E=9.86715e-18 |
|
|
1 |
32 |
S=129 I=75 E=3.12272e-08 |
|
|
169 |
215 |
S=109 I=40 E=1.01155e-05 |
|
[SSF52540] | 32 |
244 |
- |
Suggestions Access unfiltered results
|
|
Set of Uniprot with relevant PubMed cross-references ncbi-blastp |
21 hits |
|
|
Swiss-Prot ncbi-blastp |
4 hits |
|
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp |
0 hits |
|
HAMAP scan |
0 hits |
|
|
IprScan |
5 hits |
Miscellaneous analyses
|
XFF4834R_chr42500 |
DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
|
|
XFF4834R_chr42520 |
| ID | XFF4834R_chr_4930931_4931224_f2_XFF4834R-XFF4834R_chr42510 |
| AC | XFF4834R_chr42510 |
| LT | XFF4834R_chr42510 |
| OR | XFF4834R_chr from 4930931 to 4931224 on strand + |
| DE | putative plasmid stabilisation system protein |
| IP | Plasmid stabilization system |
| CL | 8.2.1 replication and maintenance GO:0006261 GO:0006276 |
| EC | |
| GO |
InterPro Curated |
| PM | |
| AN | |
| CC | COG: [R] General function prediction only; |
| CC | MODEL: XFF4834R |
| CC | STATUS: curated by pieretti (20101004) |
| MW | 11068.6 Da |
| SQ | 97 aa |
........10........20........30........40........50 |
Domain decomposition |
|
|
XFF4834R_chr42580 lcl|XFF4834R_chr_4940252_4940536_r3_XFF4834R-XFF4834R_chr42580 |
23 |
96 |
S=188 I=49 E=4.00843e-17 |
|
|
XFF4834R_plb00080 lcl|XFF4834R_plb_0006284_0006592_f2_XFF4834R-XFF4834R_plb00080 |
42 |
92 |
S=97 I=41 E=4.60633e-06 |
|
|
XFF4834R_chr41860 lcl|XFF4834R_chr_4867768_4868874_f1_XFF4834R-XFF4834R_chr41860 |
24 |
76 |
S=88 I=41 E=5.43171e-05 |
|
|
YP_361533.1 lcl|XCVc0017 |
22 |
97 |
S=403 I=100 E=1.25956e-42 |
putative plasmid stabilisation system protein |
|
|
23 |
96 |
S=266 I=66 E=1.46587e-24 |
Plasmid stabilization protein ParE |
Pubmed 16122561 |
|
|
||||||
|
|
31 |
95 |
S=242 I=71 E=1.1159e-21 |
RE protein ; Plasmid |
Pubmed 18591274 |
|
|
||||||
|
|
27 |
92 |
S=142 I=39 E=1.84789e-09 |
YacB ; Plasmid |
Pubmed 16251312 |
|
|
||||||
|
|
27 |
92 |
S=139 I=38 E=3.98006e-09 |
YacB ; Plasmid |
Pubmed 19202093 |
|
|
||||||
|
|
27 |
92 |
S=138 I=38 E=4.65636e-09 |
YacB ; Plasmid |
Pubmed 16885466 |
|
|
||||||
|
IPR007712 [PF05016] | 3 |
91 |
Plasmid stabilisation system |
|
|
40 |
92 |
S=132 I=45 E=1.45115e-08 |
Suggestions Access unfiltered results
|
|
Set of Uniprot with relevant PubMed cross-references ncbi-blastp |
5 hits |
|
|
Swiss-Prot ncbi-blastp |
0 hits |
|
|
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp |
3 hits |
|
|
HAMAP scan |
0 hits |
|
|
IprScan |
1 hits |
Miscellaneous analyses
|
XFF4834R_pla_0016 |
DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
|
|
XFF4834R_pla00190 |
| ID | XFF4834R_pla00110109_0012363_f1_XFF4834R-XFF4834R_pla00180 |
| AC | XFF4834R_pla00180 |
| LT | XFF4834R_pla00180 |
| OR | XFF4834R_pla from 12109 to 12363 on strand + |
| DE | putative plasmid stability protein |
| IP | |
| CL | 8.2.1 replication and maintenance GO:0006261 GO:0006276 |
| EC | |
| GO |
InterPro Curated |
| PM | |
| AN | This CDS is included in the PCR fragment amplified with the primer X4e (position 11774 to 11796 on plasmid 1) the primer X4c (position 12586 to 12563 on plasmid 1) described by Audy et al 1994, and that allows with the specific dectection of phaseoli by PCR. |
| CC | COG: [R] General function prediction only; |
| CC | MODEL: XFF4834R |
| CC | STATUS: curated by darrasse (20120930) |
| MW | 9388.7 Da |
| SQ | 84 aa |
........10........20........30........40........50 |
Domain decomposition |
|
|
XFF4834R_chr42630 lcl|XFF4834R_chr_4945220_4945474_f2_XFF4834R-XFF4834R_chr42630 |
1 |
84 |
S=423 I=100 E=9.43857e-46 |
|
|
NP_644608.1 lcl|Y4JJ-XAC4314 |
1 |
84 |
S=213 I=52 E=8.66657e-20 |
plasmid stability protein |
|
|
1 |
78 |
S=200 I=51 E=1.49185e-16 |
Plasmid stability protein stbC |
Pubmed 9326365 |
|
|
||||||
|
|
1 |
60 |
S=136 I=47 E=9.09454e-09 |
Trafficking protein A |
Pubmed 10639460 |
|
|
||||||
|
|
1 |
84 |
S=233 I=58 E=1.06732e-20 |
Putative plasmid stability protein y4jJ |
||
|
||||||
|
|
1 |
78 |
S=200 I=51 E=9.33353e-17 |
Plasmid stability protein stbC |
||
|
||||||
|
|
1 |
43 |
S=162 I=77 E=3.99658e-12 |
|
|
45 |
84 |
S=111 I=60 E=4.90217e-06 |
Suggestions Access unfiltered results
|
|
Set of Uniprot with relevant PubMed cross-references ncbi-blastp |
2 hits |
|
|
Swiss-Prot ncbi-blastp |
2 hits |
|
|
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp |
1 hits |
|
|
HAMAP scan |
0 hits |
|
|
IprScan |
0 hits |
Miscellaneous analyses
|
XFF4834R_pla00180 |
DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
|
|
XFF4834R_pla00200 |
| ID | XFF4834R_pla00110360_0012776_f3_XFF4834R-XFF4834R_pla00190 |
| AC | XFF4834R_pla00190 |
| LT | XFF4834R_pla00190 |
| OR | XFF4834R_pla from 12360 to 12776 on strand + |
| DE | putative plasmid stability protein |
| IP | PilT protein, N-terminal |
| CL | 8.2.1 replication and maintenance GO:0006261 GO:0006276 |
| EC | |
| GO |
InterPro Curated |
| PM | |
| AN | This gene includes the primer X4c (position 12586 to 12563 on plasmid 1) described by Audy et al 1994, and that allows with the primer X4e (position 11774 to 11796 on plasmid 1) the specific dectection of phaseoli by PCR. |
| CC | COG: [R] General function prediction only; |
| CC | MODEL: XFF4834R |
| CC | STATUS: curated by darrasse (20120930) |
| MW | 14832.8 Da |
| SQ | 138 aa |
........10........20........30........40........50 |
|
|
XFF4834R_chr42640 lcl|XFF4834R_chr_4945471_4945755_f1_XFF4834R-XFF4834R_chr42640 |
1 |
47 |
S=249 I=100 E=3.01473e-24 |
|
|
NP_644609.1 lcl|Y4JK-XAC4315 |
1 |
136 |
S=316 I=51 E=1.02497e-31 |
plasmid stability protein |
|
|
YP_361660.1 lcl|XCVd0101 |
3 |
132 |
S=136 I=34 E=6.56439e-10 |
hypothetical protein |
|
|
NP_644787.1 lcl|vapC-XACb0059 |
3 |
132 |
S=136 I=34 E=6.56439e-10 |
virulence associated protein |
|
|
1 |
138 |
S=370 I=52 E=7.23096e-37 |
Plasmid stability protein stbB |
Pubmed 9326365 |
|
|
||||||
|
|
1 |
137 |
S=303 I=45 E=1.02693e-28 |
Trafficking protein B |
Pubmed 10639460 |
|
|
||||||
|
|
21 |
132 |
S=207 I=42 E=4.14171e-17 |
DNA capable of inhibiting gonococcal transformation, clone pGCU22. |
Pubmed 3137581 |
|
|
||||||
|
|
3 |
138 |
S=191 I=36 E=4.20753e-15 |
Putative plasmid stability-like protein |
Pubmed 16237001 |
|
|
||||||
|
|
3 |
136 |
S=150 I=34 E=3.58143e-10 |
Plasmid stability-like protein |
Pubmed 9353917 |
|
|
||||||
|
|
1 |
126 |
S=133 I=30 E=3.73477e-08 |
Putative virulence associated protein C Putative virulence-associated protein C |
Pubmed 18226230 |
|
|
||||||
|
|
3 |
136 |
S=119 I=32 E=1.99026e-06 |
MvpA protein Plasmid maintenance protein Putative STBORF2 |
Pubmed 11115111 |
|
|
||||||
|
|
3 |
136 |
S=118 I=32 E=2.65378e-06 |
MvpA ; Plasmid |
Pubmed 14573649 |
|
|
||||||
|
|
3 |
136 |
S=117 I=32 E=3.66408e-06 |
Putative post-segregational-killing anti-toxin ; Plasmid |
Pubmed 16926437 |
|
|
||||||
|
|
1 |
137 |
S=394 I=55 E=7.06828e-40 |
Putative plasmid stability protein y4jK |
||
|
||||||
|
|
1 |
138 |
S=370 I=52 E=4.97469e-37 |
Plasmid stability protein stbB |
||
|
||||||
|
IPR002716 [PF01850] | 2 |
135 |
PilT protein, N-terminal |
|
|
1 |
39 |
S=133 I=62 E=1.03336e-08 |
|
|
40 |
99 |
S=101 I=56 E=7.65705e-05 |
Suggestions Access unfiltered results
|
|
Set of Uniprot with relevant PubMed cross-references ncbi-blastp |
9 hits |
|
|
Swiss-Prot ncbi-blastp |
2 hits |
|
|
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp |
1 hits |
|
|
HAMAP scan |
0 hits |
|
|
IprScan |
1 hits |
Miscellaneous analyses
|
XFF4834R_pla00440 |
DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
|
|
XFF4834R_pla_0047 |
| ID | |
| AC | XFF4834R_pla00450 |
| LT | XFF4834R_pla00450 |
| OR | XFF4834R_pla from 35364 to 36002 on strand - |
| DE | Putative plasmid partitioning protein |
| IP | Cobyrinic acid a,c-diamide synthase |
| CL | 8.2.1 replication and maintenance GO:0006261 GO:0006276 |
| EC | |
| GO |
InterPro Biological Process: cobalamin biosynthetic process (GO:0009236) c-diamide synthase activity (GO:0042242) Curated |
| PM | |
| AN | |
| CC | COG: [D] Cell cycle control, cell division, chromosome partitioning; |
| CC | MODEL: XFF4834R |
| CC | STATUS: curated by szurek (20101121) |
| MW | 21769.5 Da |
| SQ | 212 aa |
........10........20........30........40........50 |
|
|
XFF4834R_plb00030 lcl|XFF4834R_plb00030087_0003716_f3_XFF4834R-XFF4834R_plb00030 |
1 |
204 |
S=253 I=35 E=2.03171e-24 |
|
|
XFF4834R_chr42750 lcl|XFF4834R_chr_4952141_4952770_f2_XFF4834R-XFF4834R_chr42750 |
9 |
196 |
S=217 I=32 E=4.51616e-20 |
|
|
XFF4834R_chr01590 lcl|XFF4834R_chr01750622_0197254_f2_XFF4834R-XFF4834R_chr01590 |
1 |
107 |
S=172 I=44 E=1.43404e-14 |
|
|
XFF4834R_chr42390 lcl|XFF4834R_chr_4923584_4924216_f2_XFF4834R-XFF4834R_chr42390 |
4 |
187 |
S=155 I=33 E=1.64596e-12 |
|
|
XFF4834R_chr37920 lcl|XFF4834R_chr41010721_4383518_f3_XFF4834R-XFF4834R_chr37920 |
2 |
44 |
S=106 I=56 E=1.28298e-06 |
|
|
1 |
206 |
S=384 I=38 E=9.83274e-40 |
probable plasmid partitioning protein |
|
|
YP_361515.1 lcl|parA-XCVb0021 |
1 |
201 |
S=270 I=35 E=6.73851e-26 |
plasmid partitioning-family protein |
|
|
NP_644727.1 lcl|parA-XACa0041 |
9 |
200 |
S=210 I=31 E=1.12054e-18 |
partition protein A |
|
|
NP_640548.1 lcl|parA-XAC0192 |
1 |
107 |
S=172 I=44 E=5.27201e-14 |
partition protein |
|
|
YP_361906.1 lcl|XCV0175 |
1 |
186 |
S=170 I=32 E=7.94222e-14 |
ParA family partition protein |
|
|
NP_635569.1 lcl|parA-XCC0174 |
1 |
107 |
S=166 I=43 E=2.69186e-13 |
partition protein |
|
|
NP_644747.1 lcl|parA-XACb0019 |
10 |
200 |
S=127 I=30 E=1.41848e-08 |
partition protein A |
|
|
NP_644704.1 lcl|parA-XACa0018 |
10 |
200 |
S=127 I=30 E=1.41848e-08 |
partition protein A |
|
|
YP_361521.1 lcl|XCVc0005 |
10 |
200 |
S=127 I=30 E=1.44344e-08 |
putative partition protein |
|
|
NP_644782.1 lcl|parA-XACb0054 |
1 |
59 |
S=113 I=41 E=7.49349e-07 |
partition protein A |
|
|
1 |
197 |
S=343 I=41 E=3.16839e-33 |
Putative MinD/ParA family ATPase ; Plasmid |
Pubmed 18227089 |
|
|
||||||
|
|
1 |
207 |
S=272 I=36 E=1.46003e-24 |
ParA partitioning protein ; Plasmid |
Pubmed 15995187 |
|
|
||||||
|
|
1 |
207 |
S=272 I=36 E=1.46003e-24 |
Partitioning protein A ; Plasmid |
Pubmed 17261525 |
|
|
||||||
|
|
1 |
204 |
S=271 I=34 E=1.98102e-24 |
ATPase ; Plasmid |
Pubmed 16165318 |
|
|
||||||
|
|
1 |
207 |
S=270 I=36 E=2.25781e-24 |
ParA ; Plasmid |
||
|
||||||
|
|
1 |
204 |
S=267 I=37 E=5.63988e-24 |
Partitioning protein ; Plasmid |
Pubmed 19273683 |
|
|
||||||
|
|
1 |
204 |
S=256 I=36 E=1.2678e-22 |
ORF209 ; Plasmid |
Pubmed 16269793 |
|
|
||||||
|
|
2 |
199 |
S=245 I=34 E=2.90006e-21 |
Partitioning protein |
Pubmed 18448537 |
|
|
||||||
|
|
1 |
196 |
S=242 I=34 E=5.24675e-21 |
Plasmid partitioning protein-like |
Pubmed 16697042 |
|
|
||||||
|
|
1 |
187 |
S=232 I=35 E=9.40206e-20 |
ParA ; Plasmid |
Pubmed 14702321 |
|
|
||||||
|
[G3DSA:3.40.50.300] | 2 |
200 |
- |
|
IPR002586 [PF01656] | 4 |
172 |
Cobyrinic acid a,c-diamide synthase |
|
[seg] | 66 |
77 |
- |
|
[seg] | 109 |
120 |
- |
|
|
129 |
197 |
S=117 I=43 E=9.54685e-07 |
|
|
1 |
44 |
S=104 I=54 E=4.31085e-05 |
Suggestions Access unfiltered results
|
|
Set of Uniprot with relevant PubMed cross-references ncbi-blastp |
102 hits |
|
|
Swiss-Prot ncbi-blastp |
7 hits |
|
|
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp |
5 hits |
|
|
HAMAP scan |
0 hits |
|
|
IprScan |
4 hits |
Miscellaneous analyses
|
XFF4834R_plb00020 |
DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
|
|
XFF4834R_plb00040 |
| ID | |
| AC | XFF4834R_plb00030 |
| LT | XFF4834R_plb00030 |
| OR | XFF4834R_plb from 3087 to 3716 on strand + |
| DE | Putative plasmid partitioning protein |
| IP | Cobyrinic acid a,c-diamide synthase |
| CL | 8.2.1 replication and maintenance GO:0006261 GO:0006276 |
| EC | |
| GO |
InterPro Biological Process: cobalamin biosynthetic process (GO:0009236) c-diamide synthase activity (GO:0042242) Curated |
| PM | |
| AN | |
| CC | COG: [D] Cell cycle control, cell division, chromosome partitioning; |
| CC | MODEL: XFF4834R |
| CC | STATUS: curated by szurek (20101121) |
| MW | 22073 Da |
| SQ | 209 aa |
........10........20........30........40........50 |
|
|
XFF4834R_chr42750 lcl|XFF4834R_chr_4952141_4952770_f2_XFF4834R-XFF4834R_chr42750 |
3 |
200 |
S=471 I=50 E=7.20472e-51 |
|
|
XFF4834R_pla00450 lcl|XFF4834R_pla00340364_0036002_r1_XFF4834R-XFF4834R_pla00450 |
1 |
208 |
S=277 I=37 E=2.87676e-27 |
|
|
XFF4834R_chr01590 lcl|XFF4834R_chr01750622_0197254_f2_XFF4834R-XFF4834R_chr01590 |
1 |
186 |
S=160 I=32 E=3.75832e-13 |
|
|
XFF4834R_chr20530 lcl|XFF4834R_chr22270813_2374595_r2_XFF4834R-XFF4834R_chr20530 |
1 |
43 |
S=99 I=51 E=9.74923e-06 |
|
|
XFF4834R_chr37920 lcl|XFF4834R_chr41010721_4383518_f3_XFF4834R-XFF4834R_chr37920 |
2 |
44 |
S=99 I=56 E=1.00952e-05 |
|
|
NP_644727.1 lcl|parA-XACa0041 |
7 |
206 |
S=476 I=51 E=6.79003e-51 |
partition protein A |
|
|
YP_361515.1 lcl|parA-XCVb0021 |
1 |
208 |
S=245 I=33 E=6.86852e-23 |
plasmid partitioning-family protein |
|
|
1 |
204 |
S=228 I=31 E=8.23482e-21 |
probable plasmid partitioning protein |
|
|
YP_361521.1 lcl|XCVc0005 |
3 |
206 |
S=161 I=32 E=9.48688e-13 |
putative partition protein |
|
|
YP_361906.1 lcl|XCV0175 |
1 |
186 |
S=161 I=32 E=1.211e-12 |
ParA family partition protein |
|
|
NP_640548.1 lcl|parA-XAC0192 |
1 |
186 |
S=160 I=32 E=1.3802e-12 |
partition protein |
|
|
NP_635569.1 lcl|parA-XCC0174 |
1 |
186 |
S=159 I=32 E=2.02558e-12 |
partition protein |
|
|
NP_644747.1 lcl|parA-XACb0019 |
3 |
204 |
S=151 I=30 E=1.9889e-11 |
partition protein A |
|
|
NP_644704.1 lcl|parA-XACa0018 |
3 |
204 |
S=151 I=30 E=1.9889e-11 |
partition protein A |
|
|
1 |
59 |
S=110 I=45 E=1.84718e-06 |
putative chromosome partitioning protein |
|
|
1 |
209 |
S=987 I=92 E=2.74487e-111 |
Partitioning protein ; Plasmid |
Pubmed 19273683 |
|
|
||||||
|
|
1 |
209 |
S=918 I=91 E=7.6283e-103 |
ParA ; Plasmid |
Pubmed 14702321 |
|
|
||||||
|
|
1 |
208 |
S=891 I=82 E=1.36469e-99 |
ParA partitioning protein ; Plasmid |
Pubmed 15995187 |
|
|
||||||
|
|
1 |
208 |
S=891 I=82 E=1.36469e-99 |
Partitioning protein A ; Plasmid |
Pubmed 17261525 |
|
|
||||||
|
|
1 |
208 |
S=890 I=82 E=1.88424e-99 |
ParA ; Plasmid |
||
|
||||||
|
|
1 |
205 |
S=889 I=83 E=2.4263e-99 |
ORF209 ; Plasmid |
Pubmed 16269793 |
|
|
||||||
|
|
2 |
206 |
S=526 I=57 E=2.01658e-55 |
ParA protein |
Pubmed 19286788 |
|
|
||||||
|
|
2 |
203 |
S=504 I=55 E=1.18182e-52 |
Partitioning protein |
Pubmed 18448537 |
|
|
||||||
|
|
2 |
172 |
S=457 I=54 E=5.85403e-47 |
ORF58 |
Pubmed 12452967 |
|
|
||||||
|
|
3 |
186 |
S=439 I=48 E=7.52555e-45 |
Partition protein ; Plasmid |
Pubmed 18413319 |
|
|
||||||
|
[G3DSA:3.40.50.300] | 2 |
204 |
- |
|
IPR002586 [PF01656] | 4 |
123 |
Cobyrinic acid a,c-diamide synthase |
|
|
127 |
191 |
S=189 I=58 E=1.80924e-15 |
|
|
46 |
86 |
S=144 I=72 E=5.08484e-10 |
|
|
1 |
28 |
S=131 I=93 E=2.39835e-08 |
|
|
90 |
123 |
S=125 I=68 E=1.14208e-07 |
|
|
130 |
204 |
S=117 I=34 E=1.02777e-06 |
|
|
133 |
208 |
S=111 I=32 E=5.43398e-06 |
|
|
1 |
58 |
S=109 I=45 E=9.66112e-06 |
|
|
94 |
208 |
S=106 I=30 E=2.2118e-05 |
Suggestions Access unfiltered results
|
|
Set of Uniprot with relevant PubMed cross-references ncbi-blastp |
108 hits |
|
|
Swiss-Prot ncbi-blastp |
8 hits |
|
|
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp |
5 hits |
|
|
HAMAP scan |
0 hits |
|
|
IprScan |
2 hits |
Miscellaneous analyses
|
XFF4834R_plb00090 |
DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
|
|
XFF4834R_plb00110 |
| ID | |
| AC | XFF4834R_plb00100 |
| LT | XFF4834R_plb00100 |
| OR | XFF4834R_plb from 7121 to 8398 on strand + |
| DE | Putative replication protein RepA |
| IP | Plasmid encoded RepA protein |
| CL | 8.2.1 replication and maintenance GO:0006261 GO:0006276 |
| EC | |
| GO |
InterPro Curated |
| PM | |
| AN | |
| CC | COG: [S] Function unknown; |
| CC | MODEL: XFF4834R |
| CC | STATUS: curated by szurek (20101122) |
| MW | 46214.6 Da |
| SQ | 425 aa |
........10........20........30........40........50 |
Domain decomposition |
|
|
NP_642756.1 lcl|repA-XAC2441 |
117 |
405 |
S=993 I=69 E=3.87675e-113 |
replication protein |
|
|
YP_361657.1 lcl|XCVd0098 |
117 |
405 |
S=792 I=52 E=1.03565e-88 |
putative replication protein A |
|
|
NP_644784.1 lcl|repA-XACb0056 |
117 |
405 |
S=788 I=52 E=2.82267e-88 |
replication protein A |
|
|
132 |
405 |
S=1162 I=78 E=5.19188e-132 |
RepA ; Plasmid |
Pubmed 14702321 |
|
|
||||||
|
|
112 |
405 |
S=1128 I=74 E=6.2687e-128 |
Probable RepA ; Plasmid |
Pubmed 16697042 |
|
|
||||||
|
|
109 |
405 |
S=1075 I=72 E=1.65611e-121 |
Replication protein ; Plasmid |
Pubmed 19273683 |
|
|
||||||
|
|
136 |
405 |
S=739 I=56 E=9.99421e-81 |
Putative replication protein A ; Plasmid |
Pubmed 18227089 |
|
|
||||||
|
|
133 |
405 |
S=714 I=47 E=1.05046e-77 |
Replication protein |
Pubmed 11544236 |
|
|
||||||
|
|
146 |
402 |
S=371 I=34 E=3.5626e-36 |
Replication protein ; Plasmid |
Pubmed 10618203 |
|
|
||||||
|
|
120 |
403 |
S=289 I=29 E=3.53297e-26 |
RepA protein ; Plasmid |
Pubmed 11812851 |
|
|
||||||
|
|
158 |
401 |
S=257 I=32 E=2.25724e-22 |
RepA replication protein ; Plasmid |
Pubmed 10049392 |
|
|
||||||
|
|
129 |
401 |
S=250 I=27 E=1.67677e-21 |
RepA protein |
Pubmed 12055285 |
|
|
||||||
|
|
137 |
401 |
S=249 I=29 E=2.2751e-21 |
Plasmid replication protein |
Pubmed 15033235 |
|
|
||||||
|
IPR006881 [PF04796] | 206 |
363 |
Plasmid encoded RepA protein |
|
[seg] | 46 |
60 |
- |
|
[seg] | 406 |
425 |
- |
|
|
132 |
205 |
S=271 I=64 E=2.62591e-25 |
|
|
276 |
317 |
S=155 I=62 E=2.48468e-11 |
|
|
318 |
368 |
S=153 I=51 E=5.21342e-11 |
|
|
206 |
276 |
S=137 I=43 E=4.14905e-09 |
|
|
274 |
405 |
S=118 I=24 E=8.92145e-07 |
Suggestions Access unfiltered results
|
|
Set of Uniprot with relevant PubMed cross-references ncbi-blastp |
21 hits |
|
|
Swiss-Prot ncbi-blastp |
0 hits |
|
|
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp |
0 hits |
|
|
HAMAP scan |
0 hits |
|
|
IprScan |
3 hits |
Miscellaneous analyses
|
XFF4834R_plc00130 |
DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
|
|
XFF4834R_plc00150 |
| ID | StbB |
| AC | XFF4834R_plc00140 |
| LT | XFF4834R_plc00140 |
| OR | XFF4834R_plc from 7504 to 8205 on strand - |
| DE | probable plasmid stability protein |
| IP | |
| CL | 8.2.1 replication and maintenance GO:0006261 GO:0006276 |
| EC | |
| GO |
InterPro Curated |
| PM | |
| AN | |
| CC | COG: [C] Energy production and conversion; |
| CC | MODEL: XFF4834R |
| CC | STATUS: curated by opruvost (20100506) |
| MW | 25564.9 Da |
| SQ | 233 aa |
........10........20........30........40........50 |
|
|
XFF4834R_chr42470 lcl|XFF4834R_chr_4928676_4929383_r2_XFF4834R-XFF4834R_chr42470 |
1 |
233 |
S=585 I=50 E=1.49971e-64 |
|
|
XFF4834R_chr42470 lcl|XFF4834R_chr_4928676_4929383_r2_XFF4834R-XFF4834R_chr42470 |
1 |
233 |
S=585 I=50 E=1.49971e-64 |
|
|
1 |
233 |
S=1110 I=92 E=1.12576e-127 |
putative stable plasmid inheritance protein |
|
|
YP_361529.1 lcl|XCVc0013 |
1 |
208 |
S=556 I=52 E=1.90917e-60 |
putative plasmid stable inheritance protein |
|
|
NP_644750.1 lcl|XACb0022-XACb0022 |
71 |
233 |
S=431 I=53 E=2.42779e-45 |
hypothetical protein |
|
|
NP_644701.1 lcl|XACa0015-XACa0015 |
71 |
233 |
S=431 I=53 E=2.42779e-45 |
hypothetical protein |
|
|
NP_644751.1 lcl|XACb0023-XACb0023 |
1 |
71 |
S=186 I=49 E=1.12844e-15 |
hypothetical protein |
|
|
NP_644700.1 lcl|XACa0014-XACa0014 |
1 |
71 |
S=186 I=49 E=1.12844e-15 |
hypothetical protein |
|
|
1 |
233 |
S=902 I=72 E=6.87083e-101 |
Putative uncharacterized protein ; Plasmid |
Pubmed 14645321 |
|
|
||||||
|
|
1 |
233 |
S=902 I=72 E=6.87083e-101 |
StbB ; Plasmid |
Pubmed 18268088 |
|
|
||||||
|
|
1 |
233 |
S=897 I=71 E=3.15971e-100 |
Putative uncharacterized protein ; Plasmid |
||
|
||||||
|
|
1 |
233 |
S=895 I=71 E=5.10394e-100 |
Conserved hypothetical plasmid protein |
Pubmed 18268088 |
|
|
||||||
|
|
1 |
231 |
S=571 I=50 E=9.58375e-61 |
Putative uncharacterized protein ; Plasmid |
Pubmed 12534468 |
|
|
||||||
|
|
1 |
231 |
S=569 I=51 E=1.56164e-60 |
Putative uncharacterized protein orf16 ; Plasmid |
||
|
||||||
|
|
1 |
231 |
S=555 I=50 E=9.00129e-59 |
Putative uncharacterized protein ; Plasmid |
Pubmed 15288784 |
|
|
||||||
|
|
1 |
231 |
S=555 I=50 E=9.00129e-59 |
Putative uncharacterized protein ; Plasmid |
Pubmed 10719200 |
|
|
||||||
|
|
1 |
231 |
S=419 I=38 E=2.27743e-42 |
Stability/partitioning determinant ; Plasmid |
Pubmed 15262947 |
|
|
||||||
|
|
2 |
231 |
S=402 I=37 E=2.65997e-40 |
Stability protein ; Plasmid |
Pubmed 14634868 |
|
|
||||||
|
|
72 |
213 |
S=390 I=55 E=8.01326e-40 |
|
|
1 |
77 |
S=195 I=47 E=3.61498e-16 |
Suggestions Access unfiltered results
|
|
Set of Uniprot with relevant PubMed cross-references ncbi-blastp |
18 hits |
|
|
Swiss-Prot ncbi-blastp |
0 hits |
|
|
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp |
2 hits |
|
|
HAMAP scan |
0 hits |
|
|
IprScan |
0 hits |
Miscellaneous analyses
|
XFF4834R_plc00390 |
DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
|
|
XFF4834R_plc00410 |
| ID | |
| AC | XFF4834R_plc00400 |
| LT | XFF4834R_plc00400 |
| OR | XFF4834R_plc from 32608 to 34101 on strand + |
| DE | Putative replication protein |
| IP | |
| CL | 8.2.1 replication and maintenance GO:0006261 GO:0006276 |
| EC | |
| GO |
InterPro Curated |
| PM | |
| AN | |
| CC | COG: [S] Function unknown; |
| CC | MODEL: XFF4834R |
| CC | STATUS: curated by szurek (20101122) |
| MW | 55522.7 Da |
| SQ | 497 aa |
........10........20........30........40........50 |
Domain decomposition |
|
|
1 |
490 |
S=2131 I=83 E=0 |
putative replication protein |
|
|
6 |
493 |
S=1915 I=74 E=0 |
Replication protein ; Plasmid |
Pubmed 18591274 |
|
|
||||||
|
|
8 |
483 |
S=1629 I=69 E=0 |
Replication protein ; Plasmid |
Pubmed 18413319 |
|
|
||||||
|
|
6 |
458 |
S=1618 I=68 E=0 |
Replication initiation protein ; Plasmid |
Pubmed 17261525 |
|
|
||||||
|
|
6 |
385 |
S=1464 I=72 E=1.56453e-168 |
RepA replication protein ; Plasmid |
Pubmed 15995187 |
|
|
||||||
