Xanthomonas fuscans subsp. fuscans

3 hits

XFF4834R_chr15370 rimJ XFF4834R_chr15370 probable ribosomal protein S5 alanine N-acetyltransferase
XFF4834R_chr18550 XFF4834R_chr19890270_2120683_f2_XFF4834R-XFF4834R_chr18550 XFF4834R_chr18550 hypothetical Iojap-like ribosome associated protein
XFF4834R_chr21240 engA XFF4834R_chr21240 probable GTP-binding protein EngA

rimJ XFF4834R_chr15370

XFF4834R_chr15380

ID	rimJ
AC	XFF4834R_chr15370
LT	XFF4834R_chr15370
OR	XFF4834R_chr from 1770246 to 1770869 on strand +
DE	probable ribosomal protein S5 alanine N-acetyltransferase
IP	Acyl-CoA N-acyltransferase
CL	6.6 Ribosome GO:0009281
EC
GO	InterPro Biological Process: metabolic process (GO:0008152) Molecular Function: N-acetyltransferase activity (GO:0008080) Curated
PM
AN
CC	COG: [J] Translation, ribosomal structure and biogenesis;
CC	MODEL: XFF4834R
CC	STATUS: curated by cverniere (20100810)
MW	22956.1 Da
SQ	207 aa
	........10........20........30........40........50 \| \| \| \| \| MSLPRFAPIRRADGVVLCDLAVVDAAAMADYHSRNRVHLADAMPLRPPAF YTVEGWRRLCMAYRSAMPGEREVQLVLLQGEQVIGTTGFTQIQRGAFQAC HMGYGLDAAQQGRGLIQWAATQGIAFAFGPLGLHRVMAQYVPENLRSARV LQRLGFQIEGYARRYLQLNGHWRDHVLTSRLRDDGTLGEGTVDGQPLSGH SARELDP

Domain decomposition

XFF4834R_chr41460 lcl|XFF4834R_chr_4822327_4822881_r1_XFF4834R-XFF4834R_chr41460

160

S=100 I=34 E=7.59582e-06

NP_643404.1 lcl|rimJ-XAC3095

207

S=942 I=87 E=2.33668e-107

ribosomal protein alanine acetyltransferase

YP_364957.1 lcl|rimJ-XCV3226

207

S=884 I=83 E=2.38463e-100

ribosomal protein alanine N-acetyltransferase

NP_638266.1 lcl|rimJ-XCC2918

185

S=712 I=75 E=1.74206e-79

ribosomal protein alanine acetyltransferase

lcl|XALc_0875

184

S=220 I=42 E=8.39374e-20

hypothetical acetyltransferase protein

NP_644579.1 lcl|XAC4280-XAC4280

160

S=99 I=34 E=3.58931e-05

acetyltransferase

P0A948 sp|P0A948|RIMJ_ECOLI

188

S=266 I=38 E=8.03646e-24

Ribosomal-protein-alanine acetyltransferase EC=2.3.1.128 ; Acyltransferase Cytoplasm

Pubmed 2828880,1356970

prodomImg

Q9JMW0 sp|Q9JMW0|Q9JMW0_BRAJA

184

S=190 I=38 E=1.36951e-14

Probable acetyltransferase PacT

Pubmed 8825087

prodomImg

Q6GVN8 sp|Q6GVN8|Q6GVN8_MYCAV

179

S=179 I=33 E=2.54123e-13

Probable acetylation of 30S S5 subunit

Pubmed 15451099

prodomImg

Q5YBV8 sp|Q5YBV8|Q5YBV8_9BIFI

184

S=162 I=36 E=3.02029e-11

Putative uncharacterized protein

Pubmed 15466567

prodomImg

P05332 sp|P05332|YP20_BACLI

182

S=151 I=33 E=7.27985e-10

Uncharacterized N-acetyltransferase p20 EC=2.3.1.- ; Acyltransferase

Pubmed 2838827

prodomImg

sp|Q9I2H6|RIMJ_PSEAE

177

S=312 I=46 E=1.36778e-29

Ribosomal-protein-alanine acetyltransferase EC=2.3.1.128 ; Acyltransferase Cytoplasm

sp|P0A950|RIMJ_SHIFL

188

S=266 I=38 E=5.49597e-24

Ribosomal-protein-alanine acetyltransferase EC=2.3.1.128 ; Acyltransferase Cytoplasm

sp|P0A948|RIMJ_ECOLI

188

S=266 I=38 E=5.49597e-24

Ribosomal-protein-alanine acetyltransferase EC=2.3.1.128 ; Acyltransferase Cytoplasm

sp|P0A949|RIMJ_ECO57

188

S=266 I=38 E=5.49597e-24

Ribosomal-protein-alanine acetyltransferase EC=2.3.1.128 ; Acyltransferase Cytoplasm

sp|O31633|YJCK_BACSU

184

S=262 I=36 E=1.70722e-23

Putative ribosomal-protein-alanine acetyltransferase EC=2.3.1.128 ; Acyltransferase Cytoplasm

IPR016181 [G3DSA:3.40.630.30]

184

Acyl-CoA N-acyltransferase

IPR000182 [PF00583]

157

GCN5-related N-acetyltransferase

IPR000182 [PS51186]

183

GCN5-related N-acetyltransferase

[seg]

PDA1V3X5

101

141

S=204 I=98 E=2.88369e-17

PDA5Z0N4

184

207

S=113 I=92 E=3.03714e-06

PDA6P8Z6

142

188

S=106 I=43 E=2.06774e-05

IPR016181 [SSF55729]

184

Acyl-CoA N-acyltransferase

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Access unfiltered results

	Set of Uniprot with relevant PubMed cross-references ncbi-blastp	6 hits
	Swiss-Prot ncbi-blastp	8 hits
	Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp	1 hits
	HAMAP scan	0 hits
	IprScan	5 hits

Miscellaneous analyses

ERROR Tag PERLLIB Portal/Tools.pl GetLocalBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBfMhQOj/XFF4834R_chr15370.xml_fasta", "https://iant.toulouse.inra.fr/bacteria/annotation/web/img/XFF4834R.png"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

ERROR Tag PERLLIB Portal/Tools.pl GetNcbiBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBfMhQOj/XFF4834R_chr15370.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

ERROR Tag PERLLIB Portal/Tools.pl GetUniprotBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBfMhQOj/XFF4834R_chr15370.xml_fasta"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

ERROR Tag PERLLIB Portal/Tools.pl GetKeggBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBfMhQOj/XFF4834R_chr15370.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

XFF4834R_chr19890270_2120683_f2_XFF4834R-XFF4834R_chr18550 XFF4834R_chr18550

ID	XFF4834R_chr19890270_2120683_f2_XFF4834R-XFF4834R_chr18550
AC	XFF4834R_chr18550
LT	XFF4834R_chr18550
OR	XFF4834R_chr from 2120270 to 2120683 on strand +
DE	hypothetical Iojap-like ribosome associated protein
IP	Iojap-related protein
CL	6.6 Ribosome GO:0009281
EC
GO	InterPro Curated
PM
AN	Iojap-like protein = widely distibuted family probably associated with ribosomes but with unknown functions so hypothetical Iojap-like protein
CC	COG: [S] Function unknown;
CC	MODEL: XFF4834R
CC	STATUS: curated by bonneau (20100929)
MW	15216.2 Da
SQ	137 aa
	........10........20........30........40........50 \| \| \| \| \| MTSQAQVIKTSLPNPPPSVPALLATVREAVEELKARDVVEIDVRGKSSVC DYMVVVSGTSTRHVKSIADEVVKFAKRLDVMPLGVEGEREAEWVLVDLGD VVVHVMLPRVREFYALERLWTVGDQRPSDEDESDELS

Domain decomposition

YP_364664.1 lcl|XCV2933

136

S=621 I=90 E=1.088e-68

hypothetical protein

NP_643086.1 lcl|XAC2777-XAC2777

136

S=621 I=90 E=1.088e-68

hypothetical protein

NP_637963.1 lcl|XCC2615

133

S=576 I=85 E=3.19406e-63

hypothetical protein

lcl|XALc_2476

132

S=460 I=76 E=3.18458e-49

hypothetical iojap-related protein

P0AAT6 sp|P0AAT6|YBEB_ECOLI

121

S=223 I=41 E=5.46855e-19

Uncharacterized protein ybeB

Pubmed 3533535

prodomImg

Q70T38 sp|Q70T38|Q70T38_BACME

120

S=115 I=31 E=6.05873e-06

YqeL protein

Pubmed 15558816

prodomImg

sp|P0AAT8|YBEB_SHIFL

121

S=223 I=41 E=3.85333e-19

Uncharacterized protein ybeB

sp|P0AAT6|YBEB_ECOLI

121

S=223 I=41 E=3.85333e-19

Uncharacterized protein ybeB

sp|P0AAT7|YBEB_ECOL6

121

S=223 I=41 E=3.85333e-19

Uncharacterized protein ybeB

sp|P44471|Y034_HAEIN

120

S=188 I=37 E=5.44309e-15

Uncharacterized protein HI0034

sp|Q96EH3|CG030_HUMAN

122

S=155 I=39 E=6.57201e-11

Uncharacterized protein C7orf30

IPR004394 [PF02410]

120

Iojap-related protein

IPR004394 [TIGR00090]

120

Iojap-related protein

[seg]

105

PD226637

S=244 I=88 E=4.45938e-22

PD008103

121

S=112 I=44 E=3.72845e-06

Suggestions

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Access unfiltered results

	Set of Uniprot with relevant PubMed cross-references ncbi-blastp	2 hits
	Swiss-Prot ncbi-blastp	7 hits
	Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp	0 hits
	HAMAP scan	0 hits
	IprScan	3 hits

Miscellaneous analyses

ERROR Tag PERLLIB Portal/Tools.pl GetLocalBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBfMhQOj/XFF4834R_chr18550.xml_fasta", "https://iant.toulouse.inra.fr/bacteria/annotation/web/img/XFF4834R.png"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

ERROR Tag PERLLIB Portal/Tools.pl GetNcbiBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBfMhQOj/XFF4834R_chr18550.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

ERROR Tag PERLLIB Portal/Tools.pl GetUniprotBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBfMhQOj/XFF4834R_chr18550.xml_fasta"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

ERROR Tag PERLLIB Portal/Tools.pl GetKeggBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBfMhQOj/XFF4834R_chr18550.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

engA XFF4834R_chr21240

ID	engA
AC	XFF4834R_chr21240
LT	XFF4834R_chr21240
OR	XFF4834R_chr from 2463697 to 2465094 on strand +
DE	probable GTP-binding protein EngA
IP	GTP-binding protein, HSR1-related; ATPase, AAA+ type, core; Small GTP-binding protein
CL	6.6 Ribosome GO:0009281
EC
GO	InterPro Cellular Component: intracellular (GO:0005622) Molecular Function: GTP binding (GO:0005525) Molecular Function: nucleotide binding (GO:0000166) Molecular Function: nucleoside-triphosphatase activity (GO:0017111) Curated
PM
AN	engA (der) is annotated 50S ribosome-associated factor, involved in ribosome biogenesis in GenProtEC Hwang and Inouye 2006: A unique GTP-binding protein, Der contains two consecutive GTP-binding domains at the N-terminal region and its homologues are highly conserved in eubacteria but not in archaea and eukaryotes. In the present paper, we demonstrate that Der is one of the essential GTPases in Escherichia coli and that the growth rate correlates with the amount of Der in the cell. Interestingly, both GTP-binding domains are required at low temperature for cell growth, while at high temperature either one of the two domains is dispensable. Result of the sucrose density gradient experiment suggests that Der interacts specifically with 50S ribosomal subunits only in the presence of a GTP analogue, GMPPNP. The depletion of Der accumulates 50S and 30S ribosomal subunits with a concomitant reduction of polysomes and 70S ribosomes. Notably, Der-depleted cells accumulate precursors of both 23S and 16S rRNAs. Moreover, at lower Mg2+ concentration, 50S ribosomal subunits from Der-depleted cells are further dissociated into aberrant 50S ribosomal subunits; however, 30S subunits are stable. It was revealed that the aberrant 50S subunits, 40S subunits, contain less ribosomal proteins with significantly reduced amounts of L9 and L18. These results suggest that Der is a novel 50S ribosome-associated factor involved in the biogenesis and stability of 50S ribosomal subunits. We propose that Der plays a pivotal role in ribosome biogenesis possibly through interaction with rRNA or rRNA/r-protein complex. Bharat et al 2006: To probe the cellular phenotype and biochemical function associated with the G domains of Escherichia coli EngA (YfgK, Der), mutations were created in the phosphate binding loop of each. Neither an S16A nor an S217A variant of G domain 1 or 2, respectively, was able to support growth of an engA conditional null. Polysome profiles of EngA-depleted cells were significantly altered, and His(6)-EngA was found to cofractionate with the 50S ribosomal subunit. The variants were unable to complement the abnormal polysome profile and were furthermore significantly impacted with respect to in vitro GTPase activity. Together, these observations suggest that the G domains have a cooperative function in ribosome stability and/or biogenesis.
CC	COG: [R] General function prediction only;
CC	MODEL: XFF4834R
CC	STATUS: curated by darrasse (20120307)
MW	51324.8 Da
SQ	465 aa
	........10........20........30........40........50 \| \| \| \| \| MLPLVALVGRPNVGKSTIFNALTRTRDALVHDQPGVTRDRNYGVCRLDEQ QPFIVVDTGGIAGDEEGLAGATARQARAAAGEADLVLFVVDGREGESSLD DEILAWLRKLARPTVLVINKIDGTDEETVRSEFARYGFSDVVALSAAHRQ GIDELLDEVGARLPEEGAGELLDNDPARVRIAFVGRPNVGKSTLVNRLLG EERMIASEVPGTTRDSIAVDLERDGRQYRLIDTAGLRRRGKVEEAVEKFS AFKTLQAIEQCQVAVLMLDATEGVTDQDATILGAILDAGRALVVAINKWD GQSDYQRAQAEDLLSRKLGFVNWAEAVRISALHGSGMRELFHAIHRAHAS ATHEFSTSEVNQALEIAYETNPPPSIRGHVSKLRYVHPGGANPPTFIVHG TRLKVLPESYKRYLENFFRKRFKLVGTPVRFIFREGANPYEGKKNPLSDR QVARKRRLMRHVKGK

ENGA_MF_00195

raw_score=9509 norm_score=39.761

GTP-binding protein engA [engA].

XFF4834R_chr42940 lcl|mnmE-XFF4834R_chr42940

183

288

S=161 I=38 E=7.84264e-13

GTPase

XFF4834R_chr42940 lcl|mnmE-XFF4834R_chr42940

100

S=112 I=32 E=7.66855e-07

GTPase

XFF4834R_chr31750 lcl|era-XFF4834R_chr31750

S=126 I=46 E=1.52958e-08

membrane-associated, 16S rRNA-binding GTPase

XFF4834R_chr31750 lcl|era-XFF4834R_chr31750

181

289

S=122 I=37 E=4.16889e-08

membrane-associated, 16S rRNA-binding GTPase

XFF4834R_chr27750 lcl|hflX-XFF4834R_chr27750

163

S=119 I=35 E=8.59608e-08

predicted GTPase

XFF4834R_chr20000 lcl|feoB-XFF4834R_chr20000

123

S=103 I=30 E=9.69585e-06

fused ferrous iron transporter, protein B: GTP-binding protein/membrane protein

NP_642347.1 lcl|engA-XAC2021

465

S=2335 I=96 E=0

GTP-binding protein EngA

YP_363803.1 lcl|engA-XCV2072

465

S=2331 I=96 E=0

GTP-binding protein EngA

NP_637352.1 lcl|engA-XCC1987

465

S=2319 I=95 E=0

GTP-binding protein EngA

lcl|engA-XALc_1586

465

S=2065 I=83 E=0

probable gtp-binding protein enga.

NP_639572.1 lcl|trmE-XCC4238

183

288

S=164 I=38 E=1.23583e-12

tRNA modification GTPase TrmE

NP_639572.1 lcl|trmE-XCC4238

100

S=114 I=32 E=1.52913e-06

tRNA modification GTPase TrmE

YP_366214.1 lcl|trmE-XCV4483

183

288

S=162 I=38 E=2.29509e-12

tRNA modification GTPase TrmE

YP_366214.1 lcl|trmE-XCV4483

100

S=112 I=32 E=2.62547e-06

tRNA modification GTPase TrmE

NP_644664.2 lcl|trmE-XAC4370

183

279

S=160 I=38 E=3.83887e-12

tRNA modification GTPase TrmE

NP_644664.2 lcl|trmE-XAC4370

100

S=111 I=32 E=3.47037e-06

tRNA modification GTPase TrmE

Q4G699 sp|Q4G699|Q4G699_SALEN

463

S=1137 I=47 E=6.23901e-129

Putative GTP-binding protein ; Nucleotide-binding Repeat

Pubmed 15313254

prodomImg

O87407 sp|O87407|ENGA_NEIG1

458

S=1001 I=46 E=2.14182e-112

GTP-binding protein engA ; Nucleotide-binding Repeat

Pubmed 10655208

prodomImg

B7JC34 sp|B7JC34|ENGA_ACIF2

451

S=995 I=45 E=1.0936e-111

GTP-binding protein engA ; Nucleotide-binding Repeat

Pubmed 19077236

prodomImg

O51881 sp|O51881|ENGA_BUCAP

444

S=890 I=38 E=5.77453e-99

GTP-binding protein engA ; Nucleotide-binding Repeat

Pubmed 9516544

prodomImg

B0TFW3 sp|B0TFW3|ENGA_HELMI

435

S=847 I=41 E=8.43936e-94

GTP-binding protein engA ; Nucleotide-binding Repeat

Pubmed 18441057

prodomImg

Q8GE58 sp|Q8GE58|Q8GE58_HELMO

435

S=842 I=40 E=3.20365e-93

GTP-binding protein ; Nucleotide-binding Repeat

Pubmed 12446909

prodomImg

Q8GE58 sp|Q8GE58|Q8GE58_HELMO

177

347

S=185 I=32 E=1.6277e-13

GTP-binding protein ; Nucleotide-binding Repeat

Pubmed 12446909

prodomImg

B0S1N2 sp|B0S1N2|ENGA_FINM2

434

S=800 I=39 E=4.18035e-88

GTP-binding protein engA ; Nucleotide-binding Repeat

Pubmed 18263572

prodomImg

B0S1N2 sp|B0S1N2|ENGA_FINM2

177

344

S=189 I=32 E=4.84452e-14

GTP-binding protein engA ; Nucleotide-binding Repeat

Pubmed 18263572

prodomImg

B1MYB5 sp|B1MYB5|ENGA_LEUCK

434

S=731 I=35 E=9.18086e-80

GTP-binding protein engA ; Nucleotide-binding Repeat

Pubmed 18281406

prodomImg

[G3DSA:3.40.50.300]

168

[G3DSA:3.40.50.300]

178

361

IPR016484 [MF_00195]

437

GTP-binding, EngA

IPR016484 [PIRSF006485]

441

GTP-binding, EngA

IPR002917 [PF01926]

122

GTP-binding protein, HSR1-related

IPR002917 [PF01926]

179

300

GTP-binding protein, HSR1-related

IPR003593 [SM00382]

148

ATPase, AAA+ type, core

IPR003593 [SM00382]

177

325

ATPase, AAA+ type, core

IPR005225 [TIGR00231]

161

Small GTP-binding protein

IPR016484 [TIGR03594]

434

GTP-binding, EngA

IPR005225 [TIGR00231]

176

346

Small GTP-binding protein

[seg]

PDA1U4V7

100

S=229 I=75 E=2.97128e-20

PD005185

367

438

S=181 I=46 E=2.33632e-14

PDA1U839

341

370

S=150 I=97 E=1.16936e-10

PDA1L1C3

436

465

S=136 I=87 E=6.50919e-09

PD759385

226

364

S=135 I=28 E=9.14535e-09

PD202489

224

273

S=129 I=50 E=4.92035e-08

PDA1U840

341

370

S=117 I=77 E=1.10606e-06

PD000414

S=115 I=65 E=2.09022e-06

PD000414

183

220

S=113 I=61 E=3.71623e-06

PDA9G7Q2

176

247

S=109 I=37 E=1.22703e-05

PDA1N3S9

436

461

S=107 I=77 E=1.89749e-05

Suggestions

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Move your mouse over each field to get more informations
ID
DE
EC
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CL
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Access unfiltered results

	Set of Uniprot with relevant PubMed cross-references ncbi-blastp	251 hits
	Swiss-Prot ncbi-blastp	0 hits
	Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp	6 hits
	HAMAP scan	1 hits
	IprScan	12 hits

Miscellaneous analyses

ERROR Tag PERLLIB Portal/Tools.pl GetLocalBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBfMhQOj/XFF4834R_chr21240.xml_fasta", "https://iant.toulouse.inra.fr/bacteria/annotation/web/img/XFF4834R.png"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

ERROR Tag PERLLIB Portal/Tools.pl GetNcbiBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBfMhQOj/XFF4834R_chr21240.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

ERROR Tag PERLLIB Portal/Tools.pl GetUniprotBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBfMhQOj/XFF4834R_chr21240.xml_fasta"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

ERROR Tag PERLLIB Portal/Tools.pl GetKeggBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBfMhQOj/XFF4834R_chr21240.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

rimJ XFF4834R_chr15370

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XFF4834R_chr19890270_2120683_f2_XFF4834R-XFF4834R_chr18550 XFF4834R_chr18550

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engA XFF4834R_chr21240

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