Xanthomonas fuscans subsp. fuscans

4 hits

  1. XFF4834R_chr20860XFF4834R_chr22640642_2418166_r3_XFF4834R-XFF4834R_chr20860XFF4834R_chr20860putative flagellar glycosyl transferase
  2. XFF4834R_chr20910flgMXFF4834R_chr20910probable negative regulator of flagellin synthesis FlgM
  3. XFF4834R_chr20920flgNXFF4834R_chr20920flagella synthesis protein FlgN
  4. XFF4834R_chr32870XFF4834R_chr32870putative Flagellin assembly, membrane protein MviN family protein

XFF4834R_chr22640642_2418166_r3_XFF4834R-XFF4834R_chr20860 XFF4834R_chr20860
XFF4834R_chr20850
XFF4834R_chr20850 		Cluster
DrawMap 		XML file

FASTA file 		Extract
Sequence 		Codon
Usage 		Framed OrthoMCL XFF4834R_chr20870
XFF4834R_chr20870
ID XFF4834R_chr22640642_2418166_r3_XFF4834R-XFF4834R_chr20860
AC XFF4834R_chr20860
LT XFF4834R_chr20860
OR XFF4834R_chr from 2414642 to 2418166 on strand -
DE putative flagellar glycosyl transferase
IP Glycosyl transferase, family 2
CL 6.4 Flagellum GO:0019861
EC
GO InterPro


Curated
PM
AN
CC COG: [R] General function prediction only;
CC MODEL: XFF4834R
CC STATUS: curated by darrasse (20110228)
MW 128618.7 Da
SQ 1174 aa
  
........10........20........30........40........50
         |         |         |         |         |
MTPNLVSIVMPTYKPRYFAQALESVLAQTYPALELVICDDDADGAIEAAL
ASRLTGAPFPIRYHRNTPRLGELVSTIKGIGLAQGEYIKFLHDDDVLQHD
CIAQLVEAIERNPGTAMASSRRVRIDDDGQPLPDILATCFPFADDVLIDG
PELVSFLADHTINFIGEPSCVLARRADLLALGNELMALNGKAIHWVGDLA
IYVKLLRHGNLAMLASPLTQFRISSAQFSQGGRDQPGIGDQGHEDLRQGI
RQLGWRRETGDNRQVRVAPLSPHKARVFKPVDLVNALMQSAGMAERVSPT
TWLGVRHPSTVQRALIQERLRAHSGGPRIAVLLVDRHGDAAAVAATGDSL
DAVACYQRHRAWVISSSPQQVAAHGERGVLIGAYGLAATLNRVIAAQDAI
DWVLLVDAGTLFTASGLMMLALEMLALPDDCQAVYADEVMALDNGQLGLA
LRPALYLDMLLSAPATLSRHWAFRHRTLLADGGFPTGPSAAFELDYQLGL
IERYGLACIRHMAEPILIASATPQHDDEDERRAIARHLAERGYVDAVVHS
AGPGRHAVDYRHAQQPLVSILVLVDGRLPQVQRCLESILAKTSYPHYEVL
LLDRGTTEADLHGWLSGIENLGMQQIRVLRFAAEPPREAVCNAAVEYARG
EVLLWLAAGAAVMKADWLEQLLNHALRPEVGAVAGKLLRGDGTVHHAGLL
LGLGAPAARAFEGAAFDESGYLQRLQLDQNYSALSGECLMLPRQLFVDAG
GFDLEPALAQWSDVDLCLRLQQAGYLNVFAARAQLLIDPPDTTPATALDE
EAMYARWLPMMANDPAYNPGFSLDPGAGFALADPRASWRPLQSWRPLPSV
IALPADIEGCGHYRVIQPLRALREAGIAEGVLFNGYLEISELARQDPDVV
ILQRQVGEARLDAMRRMKALSRAFKVYELDDYLPNLPLKNAHREHMPKDI
LKTVRRGLGMVDRFVVSTPALAEAFAGLHSDIRVAENRLPPHWWEHLPAR
GERQGGKPRVGWAGGASHTGDLELIADVVRELADEVEWVFMGMYPFALRQ
HIHHFQPGVPIDRYPAALAAVDLDLALAPVEQNLFNECKSNLRLLEYGAC
GYPVIASDVRCYQGSLPVTLVKNRYRDWIGAIREHLADPDASAAKGAALR
EAVHRDWMLSGSHLDTWRAAWLPG

    






    

        
            
                XFF4834R
            
                
        
XFF4834R_chr15220 lcl|XFF4834R_chr16320014_1748098_r3_XFF4834R-XFF4834R_chr15220

        
562

	
775

	
S=114 I=24 E=9.59465e-07

	

     	

   





    

        
            
                XFF4834R
            
                
        
XFF4834R_chr15220 lcl|XFF4834R_chr16320014_1748098_r3_XFF4834R-XFF4834R_chr15220

        
2

	
126

	
S=105 I=27 E=1.34692e-05

	

     	

   





    

        
            
                XFF4834R
            
                
        
XFF4834R_chr28180 lcl|XFF4834R_chr30730560_3250498_r3_XFF4834R-XFF4834R_chr28180

        
5

	
132

	
S=104 I=26 E=1.85969e-05

	

     	

   





    

        
            
                X.species
            
                
        
NP_642283.1 lcl|rbfC-XAC1957

        
5

	
1174

	
S=5483 I=90 E=0

	
O-antigen biosynthesis protein

     	

   





    

        
            
                X.species
            
                
        
YP_363731.1 lcl|XCV2000

        
10

	
1173

	
S=4966 I=83 E=0

	
putative glycosyltransferase

     	

   





    

        
            
                X.species
            
                
        
 lcl|XALc_1398

        
1

	
1173

	
S=2525 I=49 E=0

	
putative glycosyltransferase protein

     	

   





    

        
            
                X.species
            
                
        
NP_637293.1 lcl|rbfC-XCC1928

        
6

	
1173

	
S=2319 I=44 E=0

	
O-antigen biosynthesis protein

     	

   





    

        
            
                X.species
            
                
        
NP_643905.1 lcl|rfbC-XAC3598

        
385

	
821

	
S=230 I=27 E=4.01234e-20

	
truncated O-antigen biosynthesis protein

     	

   





    

        
            
                X.species
            
                
        
NP_643905.1 lcl|rfbC-XAC3598

        
5

	
130

	
S=119 I=29 E=9.82834e-07

	
truncated O-antigen biosynthesis protein

     	

   





    

        
            
                X.species
            
                
        
YP_363457.1 lcl|XCV1726

        
5

	
116

	
S=139 I=31 E=3.80607e-09

	
glycosyltransferase

     	

   





    

        
            
                X.species
            
                
        
YP_364973.1 lcl|XCV3242

        
562

	
813

	
S=122 I=23 E=3.90041e-07

	
glycosyltransferase

     	

   





    

        
            
                X.species
            
                
        
NP_643419.2 lcl|XAC3110-XAC3110

        
562

	
796

	
S=122 I=24 E=4.64345e-07

	
glycosyltransferase

     	

   





    

        
            
                X.species
            
                
        
NP_638281.2 lcl|XCC2933

        
562

	
796

	
S=122 I=23 E=4.93567e-07

	
glycosyl transferase

     	

   





    

        
                pubmed
        
        

        
1

	
1173

	
S=3399 I=58 E=0

	
Putative uncharacterized protein

	
Pubmed 15028697

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
5

	
848

	
S=2327 I=56 E=0

	
Flagellar glycosyl transferase ; Flagellum

	
Pubmed 11481492,15090491

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
5

	
1173

	
S=1602 I=35 E=0

	
Putative glycosyltransferase

	
Pubmed 14594840

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
457

	
1170

	
S=882 I=34 E=1.3037e-97

	
O-antigen biosynthesis protein RbfC

	
Pubmed 10388713

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
302

	
832

	
S=782 I=36 E=1.70606e-85

	
Putative glycosyltransferase

	
Pubmed 14594840

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
434

	
824

	
S=370 I=27 E=1.69437e-35

	
Putative glycosyl transferase

	
Pubmed 9712783

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
5

	
243

	
S=346 I=36 E=1.37102e-32

	
Putative uncharacterized protein

	
Pubmed 15073305

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
469

	
823

	
S=279 I=31 E=1.73846e-24

	
O-antigen biosynthesis protein rfbC ; Lipopolysaccharide

	
Pubmed 8626291

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
566

	
785

	
S=267 I=29 E=4.33895e-23

	
WsaE

	
Pubmed 11741945,15316277

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
558

	
786

	
S=266 I=31 E=5.73525e-23

	
Putative O-antigen biosynthesis protein

	
Pubmed 15473911

    

    

         
        
prodomImg

    





    

        Iprscan
        
	[G3DSA:3.90.550.10]
	
5

	
231

	
	
-

    





    

        Iprscan
        
	[G3DSA:3.90.550.10]
	
566

	
775

	
	
-

    





    

        Iprscan
        IPR001173
	[PF00535]
	
7

	
182

	
	
Glycosyl transferase, family 2

    





    

        Iprscan
        IPR001173
	[PF00535]
	
569

	
750

	
	
Glycosyl transferase, family 2

    





    

        Iprscan
        
	[seg]
	
417

	
427

	
	
-

    





    

        Iprscan
        
	[seg]
	
697

	
716

	
	
-

    





    

        Iprscan
        
	[seg]
	
1065

	
1080

	
	
-

    





    

        Iprscan
        
	[seg]
	
1137

	
1148

	
	
-

    





    

        
            
                
            
                
        
PDA1I0A3

        
316

	
566

	
S=590 I=52 E=9.2866e-64

    	
    





    

        
            
                
            
                
        
PD910181

        
954

	
1114

	
S=426 I=55 E=7.03086e-44

    	
    





    

        
            
                
            
                
        
PD322018

        
833

	
937

	
S=347 I=59 E=2.53599e-34

    	
    





    

        
            
                
            
                
        
PDA8G3Y6

        
5

	
98

	
S=326 I=67 E=1.03953e-31

    	
    





    

        
            
                
            
                
        
PDA132U9

        
142

	
227

	
S=303 I=65 E=5.43934e-29

    	
    





    

        
            
                
            
                
        
PDA1K636

        
229

	
327

	
S=233 I=53 E=2.06903e-20

    	
    





    

        
            
                
            
                
        
PD813194

        
100

	
141

	
S=207 I=93 E=2.47853e-17

    	
    





    

        
            
                
            
                
        
PDA2E9M9

        
328

	
380

	
S=198 I=87 E=3.41927e-16

    	
    





    

        
            
                
            
                
        
PD542618

        
568

	
631

	
S=182 I=50 E=3.07446e-14

    	
    





    

        
            
                
            
                
        
PD882805

        
1115

	
1173

	
S=174 I=63 E=2.53573e-13

    	
    




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                pubmed
            
        
	    
            
Set of Uniprot with relevant PubMed cross-references ncbi-blastp

        		
 	    
            82 hits
        
    

    

        
            
                swiss-prot
            
        
	    
            
Swiss-Prot ncbi-blastp

        		
 	    
            5 hits
        
    

    
    
    

        
            
                XFF4834R
            
        
    	
            
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp

        		        
        
            3 hits
        
    

        
    

        
            
                hamap
            
        
	
            
HAMAP scan

        		        
        
            0 hits
        
    

    
    

	    
            
                Interpro Scan
            
            
	        
                
IprScan

            		        
            
                8 hits
            
    








Show or not Miscellaneous analyses




    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetLocalBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBEGZAIJ/XFF4834R_chr20860.xml_fasta", "https://iant.toulouse.inra.fr/bacteria/annotation/web/img/XFF4834R.png"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    
    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetNcbiBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBEGZAIJ/XFF4834R_chr20860.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetUniprotBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBEGZAIJ/XFF4834R_chr20860.xml_fasta"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetKeggBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBEGZAIJ/XFF4834R_chr20860.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    

    






flgM XFF4834R_chr20910




    

         
             
            XFF4834R_chr20900
            
XFF4834R_chr20900
            
        		


       
           
	   Cluster
	   
DrawMap
	   
        		
	
        
            XML file
        	


	    FASTA file
        		
	
	
             
            Extract
Sequence
            
        		
	
	
             
            Codon
Usage
            
        		
    
    
            
            Framed
            
     
  	



	
            OrthoMCL
            
    
  	
    
    
    

     


	
             
            XFF4834R_chr20920
            
XFF4834R_chr20920
            
        		

    





    

        ID
        flgM
    

    

        AC
        XFF4834R_chr20910
    

    

        LT
        XFF4834R_chr20910
    

    

        OR
        XFF4834R_chr from 2421043 to 2421354 on strand +
    

   

        DE
        probable negative regulator of flagellin synthesis FlgM
  

   

        IP
        Anti-sigma-28 factor, FlgM
  
  
  
  

        CL
        6.4 Flagellum	GO:0019861 
    

  

        EC
        
    

    
    

        GO
        
            InterPro
Biological Process: negative regulation of transcription (GO:0016481)
Cellular Component: flagellum (GO:0019861)
Molecular Function: transcription repressor activity (GO:0016564)


            Curated

        		
    


  

        PM
        
    

  

        AN
        
    

  

        CC
        COG: [KNU] Transcription;Cell motility;Intracellular trafficking, secretion, and vesicular transport; 
    

    

        CC
        MODEL: XFF4834R 
  
    
  

        CC
        STATUS: curated by darrasse (20110228)
  

  
  


    

        MW
        10729.8 Da
    


    

        SQ
        103 aa
    

    

         
        
........10........20........30........40........50
         |         |         |         |         |
MTQKIEGNLPTAATLRTTATSSKIASAGEDRASPVAATPPTDSVKLTGEA
TNLQNLQRELSQSSAIDTGRVQAVKDALQNGSYSINPDAIASRMMDLNQQ
LAG

    





Show or not Domain decomposition
 

    

        
            
                X.species
            
                
        
YP_363767.1 lcl|XCV2036

        
1

	
103

	
S=462 I=90 E=1.08987e-49

	
negative regulator of flagellin synthesis

     	

   





    

        
            
                X.species
            
                
        
NP_642315.1 lcl|flgM-XAC1989

        
1

	
103

	
S=462 I=90 E=1.08987e-49

	
flagellar protein

     	

   





    

        
            
                X.species
            
                
        
NP_637320.1 lcl|flgM-XCC1955

        
1

	
103

	
S=447 I=86 E=5.91008e-48

	
flagellar protein

     	

   





    

        
            
                X.species
            
                
        
 lcl|flgM-XALc_1431

        
1

	
101

	
S=261 I=52 E=1.96664e-25

	
probable negative regulator of flagellin synthesis protein

     	

   





    

        Iprscan
        IPR007412
	[PF04316]
	
42

	
96

	
	
Anti-sigma-28 factor, FlgM

    





    

        Iprscan
        IPR007412
	[TIGR03824]
	
3

	
99

	
	
Anti-sigma-28 factor, FlgM

    





    

        Iprscan
        
	[seg]
	
11

	
20

	
	
-

    





    

        Iprscan
        
	[SSF101498]
	
2

	
99

	
	
-

    




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                pubmed
            
        
	    
            
Set of Uniprot with relevant PubMed cross-references ncbi-blastp

        		
 	    
            1 hits
        
    

    

        
            
                swiss-prot
            
        
	    
            
Swiss-Prot ncbi-blastp

        		
 	    
            0 hits
        
    

    
    
    

        
            
                XFF4834R
            
        
    	
            
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp

        		        
        
            1 hits
        
    

        
    

        
            
                hamap
            
        
	
            
HAMAP scan

        		        
        
            0 hits
        
    

    
    

	    
            
                Interpro Scan
            
            
	        
                
IprScan

            		        
            
                4 hits
            
    








Show or not Miscellaneous analyses




    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetLocalBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBEGZAIJ/XFF4834R_chr20910.xml_fasta", "https://iant.toulouse.inra.fr/bacteria/annotation/web/img/XFF4834R.png"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    
    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetNcbiBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBEGZAIJ/XFF4834R_chr20910.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetUniprotBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBEGZAIJ/XFF4834R_chr20910.xml_fasta"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetKeggBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBEGZAIJ/XFF4834R_chr20910.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    

    






flgN XFF4834R_chr20920




    

         
             
            XFF4834R_chr20910
            
XFF4834R_chr20910
            
        		


       
           
	   Cluster
	   
DrawMap
	   
        		
	
        
            XML file
        	


	    FASTA file
        		
	
	
             
            Extract
Sequence
            
        		
	
	
             
            Codon
Usage
            
        		
    
    
            
            Framed
            
     
  	



	
            OrthoMCL
            
    
  	
    
    
    

     


	
             
            XFF4834R_chr20930
            
XFF4834R_chr20930
            
        		

    





    

        ID
        flgN
    

    

        AC
        XFF4834R_chr20920
    

    

        LT
        XFF4834R_chr20920
    

    

        OR
        XFF4834R_chr from 2421370 to 2421702 on strand +
    

   

        DE
        flagella synthesis protein FlgN
  

   

        IP
        FlgN
  
  
  
  

        CL
        6.4 Flagellum	GO:0019861 
    

  

        EC
        
    

    
    

        GO
        
            InterPro
Biological Process: flagellum assembly (GO:0009296)
Cellular Component: flagellum (GO:0019861)


            Curated

        		
    


  

        PM
        
    

  

        AN
        conserve chez les xantho
    

  

        CC
        COG: [S] Function unknown; 
    

    

        CC
        MODEL: XFF4834R 
  
    
  

        CC
        STATUS: curated by darrasse (20110228)
  

  
  


    

        MW
        12121.5 Da
    


    

        SQ
        110 aa
    

    

         
        
........10........20........30........40........50
         |         |         |         |         |
MNVNEFLQRLSDALAGERQALLENDIDGLMRHTQDKLSALQALEAAMPAG
EEERLRELAEANRANGALLARRRREVNWALRHLGRTESAPSYDAKGQSSV
LRGGRSLAVA

    






    

        
            
                X.species
            
                
        
YP_363768.1 lcl|XCV2037

        
1

	
110

	
S=407 I=77 E=5.31289e-43

	
hypothetical protein

     	

   





    

        
            
                X.species
            
                
        
NP_642316.1 lcl|XAC1990-XAC1990

        
1

	
110

	
S=407 I=77 E=5.31289e-43

	
hypothetical protein

     	

   





    

        
            
                X.species
            
                
        
NP_637321.1 lcl|XCC1956

        
1

	
110

	
S=346 I=65 E=1.40243e-35

	
hypothetical protein

     	

   





    

        
            
                X.species
            
                
        
 lcl|XALc_1432

        
2

	
110

	
S=228 I=50 E=2.88317e-21

	
hypothetical protein

     	

   





    

        Iprscan
        IPR007809
	[PF05130]
	
5

	
98

	
	
FlgN

    





    

        Iprscan
        
	[seg]
	
51

	
75

	
	
-

    





    

        
            
                
            
                
        
PD598009

        
1

	
110

	
S=370 I=72 E=2.01607e-37

    	
    




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Show or not Access unfiltered results






    

       
            
                pubmed
            
        
	    
            
Set of Uniprot with relevant PubMed cross-references ncbi-blastp

        		
 	    
            0 hits
        
    

    

        
            
                swiss-prot
            
        
	    
            
Swiss-Prot ncbi-blastp

        		
 	    
            0 hits
        
    

    
    
    

        
            
                XFF4834R
            
        
    	
            
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp

        		        
        
            1 hits
        
    

        
    

        
            
                hamap
            
        
	
            
HAMAP scan

        		        
        
            0 hits
        
    

    
    

	    
            
                Interpro Scan
            
            
	        
                
IprScan

            		        
            
                2 hits
            
    








Show or not Miscellaneous analyses




    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetLocalBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBEGZAIJ/XFF4834R_chr20920.xml_fasta", "https://iant.toulouse.inra.fr/bacteria/annotation/web/img/XFF4834R.png"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    
    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetNcbiBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBEGZAIJ/XFF4834R_chr20920.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetUniprotBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBEGZAIJ/XFF4834R_chr20920.xml_fasta"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetKeggBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBEGZAIJ/XFF4834R_chr20920.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    

    






 XFF4834R_chr32870




    

         
             
            XFF4834R_chr32860
            
XFF4834R_chr32860
            
        		


       
           
	   Cluster
	   
DrawMap
	   
        		
	
        
            XML file
        	


	    FASTA file
        		
	
	
             
            Extract
Sequence
            
        		
	
	
             
            Codon
Usage
            
        		
    
    
            
            Framed
            
     
  	



	
            OrthoMCL
            
    
  	
    
    
    

     


	
             
            XFF4834R_chr32880
            
XFF4834R_chr32880
            
        		

    





    

        ID
        
    

    

        AC
        XFF4834R_chr32870
    

    

        LT
        XFF4834R_chr32870
    

    

        OR
        XFF4834R_chr from 3786509 to 3788116 on strand -
    

   

        DE
        putative Flagellin assembly, membrane protein MviN family protein
  

   

        IP
        Flagellin assembly, membrane protein MviN
  
  
  
  

        CL
        6.4 Flagellum	GO:0019861 
    

  

        EC
        
    

    
    

        GO
        
            InterPro



            Curated

        		
    


  

        PM
        
    

  

        AN
        IPR004268 Flagellin assembly, membrane protein MviN. This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII [1]. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly [2]. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [3]. 
    

  

        CC
        COG: [R] General function prediction only; 
    

    

        CC
        MODEL: XFF4834R 
  
    
  

        CC
        STATUS: curated by darrasse (20120307)
  

  
  


    

        MW
        58150.6 Da
    


    

        SQ
        535 aa
    

    

         
        
........10........20........30........40........50
         |         |         |         |         |
MSKPGMLRGLLSFSSMTMISRVLGLIRDQAISTTFGANAVTDAFWVAFRI
PNFLRRLFAEGSFATAFVPVFTEVKETRPHADLRELMARVSGTLGGMLLL
ITALGLIFTPQLAAVFSDGAATDPEKYGLLVDLLRLTFPFLLFVSLTALA
GGALNSFQRFAIPALTPVILNLCMIAGALWLAPRLDVPILALGWAVLVAG
ALQLLFQLPALKGIDLLTLPRWGWNHPDVRKVLTLMIPTLFGSSIAQINL
MLDTVIAARLADGSQSWLSLADRFLELPLGVFGVALGTVILPALARHHVK
TDRTAFSGALDWGFRTTLLIAMPAMLGLLLLAEPLVATLFQYRQFTAFDT
RMTAMSVYGLSFGLPAYAMLKVLLPAFYARQDTRTPVRAGVAALIANMVF
NFALLAVVYQIMVPPELKAQGVMQALGKQPGLHLALGIASALSSYLNLGL
LWYWLGKSGVYQRRPGWGGYALRLLLACAAMVAVLLSLLWWLPSFTQMDK
WNRIGWLAVLVGSGGATYLVAQLALGLRPRHLREG

    






    

        
            
                X.species
            
                
        
NP_641588.1 lcl|mviN-XAC1252

        
6

	
535

	
S=2226 I=85 E=0

	
virulence factor

     	

   





    

        
            
                X.species
            
                
        
NP_636528.1 lcl|mviN-XCC1153

        
6

	
534

	
S=2170 I=82 E=0

	
virulence factor

     	

   





    

        
            
                X.species
            
                
        
YP_363019.1 lcl|XCV1288

        
16

	
535

	
S=2160 I=84 E=0

	
putative Mouse virulence factor family protein

     	

   





    

        
            
                X.species
            
                
        
 lcl|mviN-XALc_0920

        
1

	
535

	
S=1718 I=69 E=0

	
probable virulence factor mvin homolog. transmembrane protein

     	

   





    

        
                pubmed
        
        

        
6

	
409

	
S=781 I=41 E=1.14986e-85

	
Virulence factor mviN homolog ; Cell inner membrane Transmembrane

	
Pubmed 9457888

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
5

	
405

	
S=745 I=39 E=2.26225e-81

	
Virulence factor mviN ; Cell inner membrane Transmembrane

	
Pubmed 8200538

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
8

	
405

	
S=507 I=34 E=1.72982e-52

	
Membrane protein

	
Pubmed 17293531

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
17

	
392

	
S=403 I=33 E=7.21807e-40

	
Virulence factor mviN homolog ; Cell inner membrane Transmembrane

	
Pubmed 11274131

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
22

	
278

	
S=375 I=35 E=1.6058e-36

	
MviN

	
Pubmed 18059491

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
5

	
156

	
S=364 I=47 E=3.19494e-35

	
Virulence factor

	
Pubmed 16550466

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
17

	
182

	
S=287 I=40 E=7.07225e-26

	
MviN

	
Pubmed 11065377

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
100

	
278

	
S=255 I=33 E=5.01687e-22

	
MviN

	
Pubmed 18059491

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
209

	
278

	
S=124 I=34 E=4.08627e-06

	
MviN

	
Pubmed 18059491

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
276

	
395

	
S=118 I=24 E=2.21773e-05

	
MviN

	
Pubmed 12088995

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
6

	
409

	
S=781 I=41 E=7.91427e-86

	
Virulence factor mviN homolog ; Cell inner membrane Transmembrane

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
16

	
407

	
S=771 I=42 E=1.10138e-84

	
Virulence factor mviN homolog ; Cell inner membrane Transmembrane

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
5

	
405

	
S=745 I=39 E=1.55707e-81

	
Virulence factor mviN ; Cell inner membrane Transmembrane

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
5

	
405

	
S=741 I=38 E=5.18615e-81

	
Virulence factor mviN homolog ; Cell inner membrane Transmembrane

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
5

	
405

	
S=741 I=38 E=5.18615e-81

	
Virulence factor mviN homolog ; Cell inner membrane Transmembrane

	

    

    

         
        
prodomImg

    





    

        Iprscan
        IPR004268
	[PF03023]
	
31

	
512

	
	
Flagellin assembly, membrane protein MviN

    





    

        Iprscan
        IPR004268
	[TIGR01695]
	
5

	
535

	
	
Flagellin assembly, membrane protein MviN

    





    

        Iprscan
        
	[seg]
	
190

	
208

	
	
-

    





    

        Iprscan
        
	[seg]
	
318

	
339

	
	
-

    





    

        Iprscan
        
	[seg]
	
442

	
456

	
	
-

    





    

        Iprscan
        
	[seg]
	
471

	
492

	
	
-

    





    

        Iprscan
        
	[tmhmm]
	
94

	
116

	
	
-

    





    

        Iprscan
        
	[tmhmm]
	
131

	
153

	
	
-

    





    

        Iprscan
        
	[tmhmm]
	
160

	
182

	
	
-

    





    

        Iprscan
        
	[tmhmm]
	
187

	
206

	
	
-

    





    

        Iprscan
        
	[tmhmm]
	
277

	
299

	
	
-

    





    

        Iprscan
        
	[tmhmm]
	
314

	
336

	
	
-

    





    

        Iprscan
        
	[tmhmm]
	
357

	
379

	
	
-

    





    

        Iprscan
        
	[tmhmm]
	
389

	
411

	
	
-

    





    

        Iprscan
        
	[tmhmm]
	
432

	
454

	
	
-

    





    

        Iprscan
        
	[tmhmm]
	
469

	
491

	
	
-

    





    

        Iprscan
        
	[tmhmm]
	
504

	
526

	
	
-

    





    

        
            
                
            
                
        
PD600893

        
221

	
313

	
S=258 I=53 E=1.05273e-23

    	
    





    

        
            
                
            
                
        
PD005504

        
6

	
80

	
S=173 I=62 E=1.88874e-13

    	
    





    

        
            
                
            
                
        
PD872948

        
73

	
140

	
S=145 I=44 E=4.20187e-10

    	
    





    

        
            
                
            
                
        
PD918535

        
412

	
441

	
S=131 I=93 E=2.64261e-08

    	
    





    

        
            
                
            
                
        
PD539941

        
360

	
405

	
S=129 I=52 E=3.68061e-08

    	
    





    

        
            
                
            
                
        
PDA1S5W9

        
141

	
175

	
S=104 I=60 E=4.93825e-05

    	
    




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Show or not Access unfiltered results






    

       
            
                pubmed
            
        
	    
            
Set of Uniprot with relevant PubMed cross-references ncbi-blastp

        		
 	    
            10 hits
        
    

    

        
            
                swiss-prot
            
        
	    
            
Swiss-Prot ncbi-blastp

        		
 	    
            25 hits
        
    

    
    
    

        
            
                XFF4834R
            
        
    	
            
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp

        		        
        
            0 hits
        
    

        
    

        
            
                hamap
            
        
	
            
HAMAP scan

        		        
        
            0 hits
        
    

    
    

	    
            
                Interpro Scan
            
            
	        
                
IprScan

            		        
            
                17 hits
            
    








Show or not Miscellaneous analyses




    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetLocalBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBEGZAIJ/XFF4834R_chr32870.xml_fasta", "https://iant.toulouse.inra.fr/bacteria/annotation/web/img/XFF4834R.png"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    
    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetNcbiBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBEGZAIJ/XFF4834R_chr32870.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetUniprotBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBEGZAIJ/XFF4834R_chr32870.xml_fasta"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetKeggBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBEGZAIJ/XFF4834R_chr32870.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    •