6 hits
XFF4834R_chr23090 | XFF4834R_chr25210645_2672865_f1_XFF4834R-XFF4834R_chr23090 | XFF4834R_chr23090 | putative TraB family membrane protein |
XFF4834R_chr42560 | XFF4834R_chr_4934358_4937300_f3_XFF4834R-XFF4834R_chr42560 | XFF4834R_chr42560 | putative TrwC relaxase |
XFF4834R_pla00270 | XFF4834R_pla00270 | putative conjugal transfer protein TrbG C-terminal fragment, pseudogene |
XFF4834R_pla00300 | XFF4834R_pla00300 | putative conjugal transfer protein TrbG N-terminal fragment, pseudogene |
XFF4834R_plb00180 | XFF4834R_plb00180 | putative TraD protein pseudogene |
XFF4834R_plc00180 | XFF4834R_plc00180 | putative mobilization protein TraI pseudogene |
![]() XFF4834R_chr23080 |
![]() DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
![]() |
![]() |
![]() XFF4834R_chr23100 |
ID | XFF4834R_chr25210645_2672865_f1_XFF4834R-XFF4834R_chr23090 |
AC | XFF4834R_chr23090 |
LT | XFF4834R_chr23090 |
OR | XFF4834R_chr from 2671645 to 2672865 on strand + |
DE | putative TraB family membrane protein |
IP | Pheromone shutdown-related, TraB; Pheromone shutdown, TraB |
CL | 5.4 Genetic exchange, recombination GO:0006310 |
EC | |
GO |
InterPro Curated |
PM | |
AN | |
CC | COG: [S] Function unknown; |
CC | MODEL: XFF4834R |
CC | STATUS: curated by darrasse (20110708) |
MW | 43907.3 Da |
SQ | 406 aa |
........10........20........30........40........50 |
![]() |
NP_642622.1 lcl|traB-XAC2305 |
1 |
406 |
S=1676 I=83 E=0 |
pheromone shutdown protein |
![]() |
YP_364234.1 lcl|XCV2503 |
1 |
406 |
S=1671 I=82 E=0 |
TraB family membrane protein |
![]() |
NP_637557.1 lcl|traB-XCC2201 |
1 |
406 |
S=1572 I=78 E=0 |
pheromone shutdown protein |
![]() |
10 |
404 |
S=1128 I=59 E=1.59091e-129 |
putative trab family membrane protein |
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18 |
406 |
S=222 I=28 E=4.11059e-18 |
Putative PrgY pheromone shutdown protein |
Pubmed 18028413 |
|
![]() |
287 |
404 |
S=214 I=34 E=3.93196e-17 |
Pheromone cCF10 shut down protein PrgY ; Plasmid |
||
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19 |
217 |
S=175 I=29 E=2.20235e-12 |
Pheromone cCF10 shut down protein PrgY ; Plasmid |
||
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24 |
217 |
S=204 I=29 E=6.51424e-16 |
TraB protein ; Plasmid |
Pubmed 12620853 |
|
![]() |
287 |
404 |
S=186 I=29 E=9.62788e-14 |
TraB protein ; Plasmid |
Pubmed 12620853 |
|
![]() |
24 |
217 |
S=203 I=29 E=7.16993e-16 |
TraB ; Plasmid |
Pubmed 7559344 |
|
![]() |
287 |
404 |
S=186 I=29 E=9.62788e-14 |
TraB ; Plasmid |
Pubmed 7559344 |
|
![]() |
24 |
217 |
S=203 I=29 E=7.35995e-16 |
TRAB ; Plasmid |
||
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287 |
404 |
S=186 I=29 E=9.37932e-14 |
TRAB ; Plasmid |
||
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28 |
215 |
S=184 I=24 E=1.42536e-13 |
TraB ; Plasmid |
Pubmed 8029329 |
|
![]() |
30 |
396 |
S=188 I=23 E=3.21318e-14 |
Uncharacterized protein MJ1365 ; Cell membrane Transmembrane |
||
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17 |
216 |
S=184 I=31 E=1.2741e-13 |
TraB domain-containing protein |
||
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19 |
216 |
S=169 I=29 E=7.73833e-12 |
TraB domain-containing protein ; Alternative splicing |
||
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19 |
216 |
S=167 I=29 E=1.34028e-11 |
TraB domain-containing protein |
||
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IPR002816 [PF01963] | 20 |
249 |
Pheromone shutdown-related, TraB |
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IPR005230 [TIGR00261] | 23 |
405 |
Pheromone shutdown, TraB |
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[seg] | 89 |
108 |
- |
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[seg] | 148 |
167 |
- |
![]() |
[seg] | 226 |
241 |
- |
![]() |
[seg] | 303 |
314 |
- |
![]() |
[tmhmm] | 266 |
288 |
- |
![]() |
[tmhmm] | 298 |
320 |
- |
![]() |
[tmhmm] | 378 |
400 |
- |
![]() |
287 |
404 |
S=280 I=45 E=2.04923e-26 |
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119 |
275 |
S=214 I=39 E=1.63692e-18 |
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76 |
143 |
S=141 I=41 E=1.47608e-09 |
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242 |
286 |
S=137 I=60 E=3.81803e-09 |
![]() |
1 |
26 |
S=137 I=96 E=3.88519e-09 |
Access unfiltered results
![]() |
Set of Uniprot with relevant PubMed cross-references ncbi-blastp |
13 hits |
![]() |
Swiss-Prot ncbi-blastp |
4 hits |
![]() |
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp |
0 hits |
![]() |
HAMAP scan |
0 hits |
![]() |
IprScan |
9 hits |
Miscellaneous analyses
![]() XFF4834R_chr42550 |
![]() DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
![]() |
![]() |
![]() XFF4834R_chr42570 |
ID | XFF4834R_chr_4934358_4937300_f3_XFF4834R-XFF4834R_chr42560 |
AC | XFF4834R_chr42560 |
LT | XFF4834R_chr42560 |
OR | XFF4834R_chr from 4934358 to 4937300 on strand + |
DE | putative TrwC relaxase |
IP | Conjugative relaxase region, N-terminal |
CL | 5.4 Genetic exchange, recombination GO:0006310 |
EC | |
GO |
InterPro Curated |
PM | |
AN | part of TraI protein? interpro trwC relaxase : Relaxases are DNA strand transferases which function during the conjugative cell to cell DNA transfer. TrwC binds to the origin of transfer (oriT) and melts the double helix. |
CC | COG: [L] Replication, recombination and repair; |
CC | MODEL: XFF4834R |
CC | STATUS: curated by darrasse (20120412) |
MW | 108185.6 Da |
SQ | 980 aa |
........10........20........30........40........50 |
![]() |
YP_361538.1 lcl|XCVc0022 |
1 |
963 |
S=4844 I=96 E=0 |
putative TraI protein |
![]() |
NP_644759.1 lcl|trwC-XACb0031 |
1 |
962 |
S=4660 I=92 E=0 |
TrwC protein |
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17 |
946 |
S=1782 I=44 E=0 |
probable conjugal transfer protein |
![]() |
1 |
943 |
S=1651 I=41 E=0 |
probable mobilization protein trai |
![]() |
1 |
963 |
S=3280 I=65 E=0 |
Putative TraC protein ; Plasmid |
Pubmed 12534468 |
|
![]() |
1 |
963 |
S=3150 I=63 E=0 |
Putative plasmid transfer protein TraC |
||
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1 |
963 |
S=3112 I=62 E=0 |
Putative TraC protein ; Plasmid |
Pubmed 15288784 |
|
![]() |
1 |
963 |
S=3112 I=62 E=0 |
Putative TraC protein ; Plasmid |
Pubmed 10719200 |
|
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14 |
945 |
S=2111 I=50 E=0 |
TrwC ; Plasmid |
Pubmed 18268088 |
|
![]() |
14 |
945 |
S=2099 I=50 E=0 |
Mobilisation protein ; Plasmid |
Pubmed 18268088 |
|
![]() |
14 |
945 |
S=2090 I=50 E=0 |
TrwC ; Plasmid |
||
![]() |
14 |
945 |
S=2087 I=50 E=0 |
TrwC protein ; Plasmid |
||
![]() |
1 |
951 |
S=1834 I=44 E=0 |
TraI ; Plasmid |
Pubmed 16244860 |
|
![]() |
1 |
950 |
S=1606 I=40 E=0 |
Conjugal transfer protein ; Plasmid |
Pubmed 18812424 |
|
![]() |
1 |
290 |
S=436 I=35 E=8.57513e-44 |
Protein traI EC=3.6.1.- ; Alternative initiation ATP-binding Conjugation DNA-binding Helicase Hydrolase Nucleotide-binding Plasmid |
||
![]() |
411 |
675 |
S=239 I=32 E=6.24878e-20 |
Protein traI EC=3.6.1.- ; Alternative initiation ATP-binding Conjugation DNA-binding Helicase Hydrolase Nucleotide-binding Plasmid |
||
![]() |
630 |
938 |
S=163 I=26 E=1.22427e-10 |
Protein traI EC=3.6.1.- ; Alternative initiation ATP-binding Conjugation DNA-binding Helicase Hydrolase Nucleotide-binding Plasmid |
||
![]() |
14 |
290 |
S=434 I=36 E=1.59251e-43 |
Protein traI EC=3.6.1.- ; ATP-binding Conjugation DNA-binding Helicase Hydrolase Nucleotide-binding Plasmid |
||
![]() |
411 |
675 |
S=238 I=33 E=9.332e-20 |
Protein traI EC=3.6.1.- ; ATP-binding Conjugation DNA-binding Helicase Hydrolase Nucleotide-binding Plasmid |
||
![]() |
IPR014862 [PF08751] | 8 |
291 |
TrwC relaxase |
![]() |
IPR014059 [TIGR02686] | 15 |
291 |
Conjugative relaxase region, N-terminal |
![]() |
[seg] | 35 |
44 |
- |
![]() |
[seg] | 349 |
370 |
- |
![]() |
[seg] | 964 |
977 |
- |
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14 |
290 |
S=486 I=43 E=3.47556e-51 |
![]() |
893 |
962 |
S=284 I=79 E=1.12479e-26 |
![]() |
290 |
348 |
S=238 I=78 E=3.82962e-21 |
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698 |
771 |
S=214 I=59 E=3.4107e-18 |
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417 |
501 |
S=201 I=53 E=1.00463e-16 |
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780 |
892 |
S=179 I=40 E=5.99122e-14 |
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666 |
697 |
S=150 I=91 E=1.54581e-10 |
![]() |
371 |
411 |
S=146 I=71 E=4.76009e-10 |
![]() |
500 |
576 |
S=137 I=44 E=6.50979e-09 |
![]() |
451 |
616 |
S=114 I=26 E=3.55803e-06 |
Access unfiltered results
![]() |
Set of Uniprot with relevant PubMed cross-references ncbi-blastp |
99 hits |
![]() |
Swiss-Prot ncbi-blastp |
9 hits |
![]() |
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp |
0 hits |
![]() |
HAMAP scan |
0 hits |
![]() |
IprScan |
5 hits |
Miscellaneous analyses
![]() XFF4834R_pla00510 |
![]() DrawMap |
XML file
FASTA file |
![]() |
Extract Sequence |
![]() XFF4834R_pla00290 |
ID | |
AC | XFF4834R_pla00270 |
LO | XFF4834R_pla00270 |
DE | putative conjugal transfer protein TrbG C-terminal fragment, pseudogene |
CL | 5.4 Genetic exchange, recombination GO:0006310 |
GO |
InterPro Curated |
PM | |
AN | trbG which is interrupted by the IS XFF4834R_pla00290, the C-terminal part of the gene is XFF4834R_pla00300 |
CC | MODEL: |
CC | STATUS: curated by carrere (20111020) |
SQ | 648 nt |
........10........20........30........40........50 |
![]() |
IPR010258 [PF03524] | 46 |
210 |
Conjugal transfer, TrbG/VirB9/CagX |
![]() |
[seg] | 61 |
71 |
- |
![]() |
[seg] | 89 |
102 |
- |
![]() |
[seg] | 9 |
26 |
- |
![]() |
[seg] | 51 |
64 |
- |
![]() |
[seg] | 166 |
182 |
- |
![]() |
[seg] | 12 |
23 |
- |
![]() |
[seg] | 13 |
24 |
- |
![]() |
[seg] | 5 |
16 |
- |
![]() |
[SignalP-NN(euk)] | 1 |
16 |
- |
![]() |
[SignalP-NN(euk)] | 1 |
18 |
- |
Access unfiltered results
![]() |
Set of Uniprot with relevant PubMed cross-references ncbi-blastx |
0 hits |
![]() |
Swiss-Prot ncbi-blastx |
0 hits |
![]() |
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastx |
0 hits |
![]() |
IprScan |
11 hits |
Miscellaneous analyses
![]() XFF4834R_pla00270 |
![]() DrawMap |
XML file
FASTA file |
![]() |
Extract Sequence |
![]() XFF4834R_pla00310 |
ID | |
AC | XFF4834R_pla00300 |
LO | XFF4834R_pla00300 |
DE | putative conjugal transfer protein TrbG N-terminal fragment, pseudogene |
CL | 5.4 Genetic exchange, recombination GO:0006310 |
GO |
InterPro Curated |
PM | |
AN | trbG is interrupted by the IS XFF4834R_pla00290. |
CC | MODEL: |
CC | STATUS: curated by carrere (20111021) |
SQ | 527 nt |
........10........20........30........40........50 |
![]() |
IPR010258 [PF03524] | 111 |
156 |
Conjugal transfer, TrbG/VirB9/CagX |
![]() |
[seg] | 39 |
65 |
- |
![]() |
[seg] | 1 |
12 |
- |
![]() |
[seg] | 24 |
69 |
- |
![]() |
[seg] | 7 |
18 |
- |
![]() |
[seg] | 26 |
42 |
- |
![]() |
[seg] | 56 |
72 |
- |
![]() |
[seg] | 2 |
15 |
- |
![]() |
[seg] | 99 |
133 |
- |
![]() |
[seg] | 140 |
154 |
- |
![]() |
[seg] | 20 |
33 |
- |
![]() |
[seg] | 37 |
62 |
- |
![]() |
[seg] | 5 |
19 |
- |
![]() |
[SignalP-NN(euk)] | 1 |
21 |
- |
![]() |
[SignalP-NN(euk)] | 1 |
17 |
- |
![]() |
[SignalP-NN(euk)] | 1 |
20 |
- |
Access unfiltered results
![]() |
Set of Uniprot with relevant PubMed cross-references ncbi-blastx |
0 hits |
![]() |
Swiss-Prot ncbi-blastx |
0 hits |
![]() |
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastx |
0 hits |
![]() |
IprScan |
16 hits |
Miscellaneous analyses
![]() XFF4834R_plb00200 |
![]() DrawMap |
XML file
FASTA file |
![]() |
Extract Sequence |
![]() XFF4834R_plb00190 |
ID | |
AC | XFF4834R_plb00180 |
LO | XFF4834R_plb00180 |
DE | putative TraD protein pseudogene |
CL | 5.4 Genetic exchange, recombination GO:0006310 |
GO |
InterPro Curated |
PM | |
AN | Frameshift at position 017447 (previously XFF4834R_plb_0024 and 0025). Orthologous gene is for instance traD in Xanthomonas arboricola pv. pruni str. CFBP 5530. |
CC | MODEL: |
CC | STATUS: curated by carrere (20111021) |
SQ | 1595 nt |
........10........20........30........40........50 |
![]() |
[G3DSA:3.40.50.300] | 83 |
530 |
- |
![]() |
[PF10412] | 127 |
515 |
- |
![]() |
[seg] | 97 |
110 |
- |
![]() |
[seg] | 73 |
87 |
- |
![]() |
[seg] | 91 |
103 |
- |
![]() |
[seg] | 21 |
31 |
- |
![]() |
[seg] | 11 |
24 |
- |
![]() |
[seg] | 20 |
40 |
- |
![]() |
[seg] | 270 |
275 |
- |
![]() |
[seg] | 3 |
16 |
- |
![]() |
[seg] | 70 |
83 |
- |
![]() |
[seg] | 61 |
74 |
- |
![]() |
[seg] | 5 |
17 |
- |
![]() |
[seg] | 22 |
35 |
- |
![]() |
[seg] | 26 |
37 |
- |
![]() |
[SignalP-NN(euk)] | 1 |
18 |
- |
![]() |
[SignalP-NN(euk)] | 1 |
17 |
- |
![]() |
[SignalP-NN(euk)] | 1 |
19 |
- |
![]() |
[SignalP-NN(euk)] | 1 |
16 |
- |
![]() |
[SignalP-NN(euk)] | 1 |
15 |
- |
![]() |
[SignalP-NN(euk)] | 1 |
23 |
- |
![]() |
[SignalP-NN(euk)] | 1 |
15 |
- |
![]() |
[SignalP-NN(euk)] | 1 |
22 |
- |
![]() |
[SignalP-NN(euk)] | 1 |
19 |
- |
![]() |
[tmhmm] | 5 |
24 |
- |
![]() |
[tmhmm] | 36 |
58 |
- |
![]() |
[tmhmm] | 68 |
85 |
- |
![]() |
[SSF52540] | 141 |
510 |
- |
Access unfiltered results
![]() |
Set of Uniprot with relevant PubMed cross-references ncbi-blastx |
0 hits |
![]() |
Swiss-Prot ncbi-blastx |
0 hits |
![]() |
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastx |
0 hits |
![]() |
IprScan |
28 hits |
Miscellaneous analyses
![]() XFF4834R_plc00480 |
![]() DrawMap |
XML file
FASTA file |
![]() |
Extract Sequence |
![]() XFF4834R_plc00290 |
ID | |
AC | XFF4834R_plc00180 |
LO | XFF4834R_plc00180 |
DE | putative mobilization protein TraI pseudogene |
CL | 5.4 Genetic exchange, recombination GO:0006310 |
GO |
InterPro Curated |
PM | |
AN | Frameshift at position 013162 (previously XFF4834R_plc_0051 and 0052). Orthologous gene in Xanthomonas is XALq3215. |
CC | MODEL: |
CC | STATUS: curated by carrere (20111021) |
SQ | 2870 nt |
........10........20........30........40........50 |
![]() |
IPR014862 [PF08751] | 10 |
293 |
TrwC relaxase |
![]() |
[PF01443] | 439 |
524 |
- |
![]() |
IPR014059 [TIGR02686] | 17 |
294 |
Conjugative relaxase protein, N-terminal domain |
![]() |
[seg] | 18 |
33 |
- |
![]() |
[seg] | 38 |
49 |
- |
![]() |
[seg] | 106 |
129 |
- |
![]() |
[seg] | 18 |
37 |
- |
![]() |
[seg] | 7 |
23 |
- |
![]() |
[seg] | 23 |
35 |
- |
![]() |
[seg] | 1 |
14 |
- |
![]() |
[seg] | 16 |
32 |
- |
![]() |
[seg] | 107 |
117 |
- |
![]() |
[seg] | 153 |
164 |
- |
![]() |
[seg] | 1 |
13 |
- |
![]() |
[seg] | 15 |
28 |
- |
![]() |
[seg] | 12 |
23 |
- |
![]() |
[seg] | 10 |
23 |
- |
![]() |
[seg] | 33 |
46 |
- |
![]() |
[seg] | 1 |
11 |
- |
![]() |
[seg] | 19 |
31 |
- |
![]() |
[seg] | 169 |
183 |
- |
![]() |
[seg] | 14 |
27 |
- |
![]() |
[seg] | 25 |
36 |
- |
![]() |
[seg] | 58 |
71 |
- |
![]() |
[seg] | 39 |
54 |
- |
![]() |
[seg] | 57 |
80 |
- |
![]() |
[seg] | 45 |
58 |
- |
![]() |
[seg] | 21 |
34 |
- |
![]() |
[seg] | 63 |
87 |
- |
![]() |
[seg] | 64 |
88 |
- |
![]() |
[seg] | 15 |
48 |
- |
![]() |
[SignalP-NN(euk)] | 1 |
23 |
- |
![]() |
[SignalP-NN(euk)] | 1 |
11 |
- |
![]() |
[SignalP-NN(euk)] | 1 |
18 |
- |
![]() |
[SignalP-NN(euk)] | 1 |
27 |
- |
![]() |
[SignalP-NN(euk)] | 1 |
22 |
- |
![]() |
[SignalP-NN(euk)] | 1 |
21 |
- |
![]() |
[SignalP-NN(euk)] | 1 |
60 |
- |
![]() |
[SignalP-NN(euk)] | 1 |
44 |
- |
![]() |
[tmhmm] | 4 |
23 |
- |
![]() |
[tmhmm] | 44 |
66 |
- |
![]() |
[SSF55464] | 1 |
313 |
- |
![]() |
[SSF52540] | 101 |
527 |
- |
Access unfiltered results
![]() |
Set of Uniprot with relevant PubMed cross-references ncbi-blastx |
0 hits |
![]() |
Swiss-Prot ncbi-blastx |
0 hits |
![]() |
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastx |
0 hits |
![]() |
IprScan |
43 hits |
Miscellaneous analyses