Xanthomonas fuscans subsp. fuscans

6 hits

  1. XFF4834R_chr23090XFF4834R_chr25210645_2672865_f1_XFF4834R-XFF4834R_chr23090XFF4834R_chr23090putative TraB family membrane protein
  2. XFF4834R_chr42560XFF4834R_chr_4934358_4937300_f3_XFF4834R-XFF4834R_chr42560XFF4834R_chr42560putative TrwC relaxase
  3. XFF4834R_pla00270XFF4834R_pla00270putative conjugal transfer protein TrbG C-terminal fragment, pseudogene
  4. XFF4834R_pla00300XFF4834R_pla00300putative conjugal transfer protein TrbG N-terminal fragment, pseudogene
  5. XFF4834R_plb00180XFF4834R_plb00180putative TraD protein pseudogene
  6. XFF4834R_plc00180XFF4834R_plc00180putative mobilization protein TraI pseudogene

XFF4834R_chr25210645_2672865_f1_XFF4834R-XFF4834R_chr23090 XFF4834R_chr23090
XFF4834R_chr23080
XFF4834R_chr23080 		Cluster
DrawMap 		XML file

FASTA file 		Extract
Sequence 		Codon
Usage 		Framed OrthoMCL XFF4834R_chr23100
XFF4834R_chr23100
ID XFF4834R_chr25210645_2672865_f1_XFF4834R-XFF4834R_chr23090
AC XFF4834R_chr23090
LT XFF4834R_chr23090
OR XFF4834R_chr from 2671645 to 2672865 on strand +
DE putative TraB family membrane protein
IP Pheromone shutdown-related, TraB; Pheromone shutdown, TraB
CL 5.4 Genetic exchange, recombination GO:0006310
EC
GO InterPro


Curated
PM
AN
CC COG: [S] Function unknown;
CC MODEL: XFF4834R
CC STATUS: curated by darrasse (20110708)
MW 43907.3 Da
SQ 406 aa
  
........10........20........30........40........50
         |         |         |         |         |
MTEQPPHVLDDALSGQPHRVVERDGVRYTLLGTAHVSLASVAAVQRAIGS
GRYDAVAVELDAQRLQALSDPDALARLDLVQVIRKGRVALFAANLALAAY
QRRLAKQLGIEPGAELKEAVNLARAQGLPVHLIDREVGLTFKRASGRLGF
FGKMKLAGGLLGGLFAADEVGEEEIEKLKQGDMLEASFGDFASESPELYE
TVIAERDQYMATRLREEVSADQREILAVVGAGHLAGLARHLEQDTAAPGP
LRESLEYVQQRKRIPWITLGILAVIVTGIGIGFWRGGLSMGADLLLQWAM
YTGGMAALGCLLAGSHPLSILTAAVVAPFKPFRLSVPTGAFAALVEVHMR
KPAYGDFLSLRDDAQTLRGWYRNRVSRVVLTFLLTNFGSMAGVWLAGVQI
FNRLHG

    






    

        
            
                XFF4834R
            
                
        
NP_642622.1 lcl|traB-XAC2305

        
1

	
406

	
S=1676 I=83 E=0

	
pheromone shutdown protein

     	

   





    

        
            
                XFF4834R
            
                
        
YP_364234.1 lcl|XCV2503

        
1

	
406

	
S=1671 I=82 E=0

	
TraB family membrane protein

     	

   





    

        
            
                XFF4834R
            
                
        
NP_637557.1 lcl|traB-XCC2201

        
1

	
406

	
S=1572 I=78 E=0

	
pheromone shutdown protein

     	

   





    

        
            
                XFF4834R
            
                
        
 lcl|XALc_1608

        
10

	
404

	
S=1128 I=59 E=1.59091e-129

	
putative trab family membrane protein

     	

   





    

        
                pubmed
        
        

        
18

	
406

	
S=222 I=28 E=4.11059e-18

	
Putative PrgY pheromone shutdown protein

	
Pubmed 18028413

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
287

	
404

	
S=214 I=34 E=3.93196e-17

	
Pheromone cCF10 shut down protein PrgY ; Plasmid

	
Pubmed 1938961,8349565

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
19

	
217

	
S=175 I=29 E=2.20235e-12

	
Pheromone cCF10 shut down protein PrgY ; Plasmid

	
Pubmed 1938961,8349565

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
24

	
217

	
S=204 I=29 E=6.51424e-16

	
TraB protein ; Plasmid

	
Pubmed 12620853

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
287

	
404

	
S=186 I=29 E=9.62788e-14

	
TraB protein ; Plasmid

	
Pubmed 12620853

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
24

	
217

	
S=203 I=29 E=7.16993e-16

	
TraB ; Plasmid

	
Pubmed 7559344

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
287

	
404

	
S=186 I=29 E=9.62788e-14

	
TraB ; Plasmid

	
Pubmed 7559344

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
24

	
217

	
S=203 I=29 E=7.35995e-16

	
TRAB ; Plasmid

	
Pubmed 7559344,7559345

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
287

	
404

	
S=186 I=29 E=9.37932e-14

	
TRAB ; Plasmid

	
Pubmed 7559344,7559345

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
28

	
215

	
S=184 I=24 E=1.42536e-13

	
TraB ; Plasmid

	
Pubmed 8029329

    

    

         
        
prodomImg

    





    

        
            
                sp_Pdown
            
        
        
sp|Q58760|Y1365_METJA

        
30

	
396

	
S=188 I=23 E=3.21318e-14

	
Uncharacterized protein MJ1365 ; Cell membrane Transmembrane

    





    

        
            
                sp_Pdown
            
        
        
sp|Q58DF3|TRABD_BOVIN

        
17

	
216

	
S=184 I=31 E=1.2741e-13

	
TraB domain-containing protein

    





    

        
            
                sp_Pdown
            
        
        
sp|Q9H4I3|TRABD_HUMAN

        
19

	
216

	
S=169 I=29 E=7.73833e-12

	
TraB domain-containing protein ; Alternative splicing

    





    

        
            
                sp_Pdown
            
        
        
sp|Q99JY4|TRABD_MOUSE

        
19

	
216

	
S=167 I=29 E=1.34028e-11

	
TraB domain-containing protein

    





    

        Iprscan
        IPR002816
	[PF01963]
	
20

	
249

	
	
Pheromone shutdown-related, TraB

    





    

        Iprscan
        IPR005230
	[TIGR00261]
	
23

	
405

	
	
Pheromone shutdown, TraB

    





    

        Iprscan
        
	[seg]
	
89

	
108

	
	
-

    





    

        Iprscan
        
	[seg]
	
148

	
167

	
	
-

    





    

        Iprscan
        
	[seg]
	
226

	
241

	
	
-

    





    

        Iprscan
        
	[seg]
	
303

	
314

	
	
-

    





    

        Iprscan
        
	[tmhmm]
	
266

	
288

	
	
-

    





    

        Iprscan
        
	[tmhmm]
	
298

	
320

	
	
-

    





    

        Iprscan
        
	[tmhmm]
	
378

	
400

	
	
-

    





    

        
            
                
            
                
        
PD186532

        
287

	
404

	
S=280 I=45 E=2.04923e-26

    	
    





    

        
            
                
            
                
        
PD114144

        
119

	
275

	
S=214 I=39 E=1.63692e-18

    	
    





    

        
            
                
            
                
        
PDA1E3X5

        
76

	
143

	
S=141 I=41 E=1.47608e-09

    	
    





    

        
            
                
            
                
        
PD821986

        
242

	
286

	
S=137 I=60 E=3.81803e-09

    	
    





    

        
            
                
            
                
        
PDA2D9R3

        
1

	
26

	
S=137 I=96 E=3.88519e-09

    	
    




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                pubmed
            
        
	    
            
Set of Uniprot with relevant PubMed cross-references ncbi-blastp

        		
 	    
            13 hits
        
    

    

        
            
                swiss-prot
            
        
	    
            
Swiss-Prot ncbi-blastp

        		
 	    
            4 hits
        
    

    
    
    

        
            
                XFF4834R
            
        
    	
            
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp

        		        
        
            0 hits
        
    

        
    

        
            
                hamap
            
        
	
            
HAMAP scan

        		        
        
            0 hits
        
    

    
    

	    
            
                Interpro Scan
            
            
	        
                
IprScan

            		        
            
                9 hits
            
    








Show or not Miscellaneous analyses




    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetLocalBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBmDVR1W/XFF4834R_chr23090.xml_fasta", "https://iant.toulouse.inra.fr/bacteria/annotation/web/img/XFF4834R.png"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    
    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetNcbiBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBmDVR1W/XFF4834R_chr23090.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetUniprotBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBmDVR1W/XFF4834R_chr23090.xml_fasta"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetKeggBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBmDVR1W/XFF4834R_chr23090.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    

    






XFF4834R_chr_4934358_4937300_f3_XFF4834R-XFF4834R_chr42560 XFF4834R_chr42560




    

         
             
            XFF4834R_chr42550
            
XFF4834R_chr42550
            
        		


       
           
	   Cluster
	   
DrawMap
	   
        		
	
        
            XML file
        	


	    FASTA file
        		
	
	
             
            Extract
Sequence
            
        		
	
	
             
            Codon
Usage
            
        		
    
    
            
            Framed
            
     
  	



	
            OrthoMCL
            
    
  	
    
    
    

     


	
             
            XFF4834R_chr42570
            
XFF4834R_chr42570
            
        		

    





    

        ID
        XFF4834R_chr_4934358_4937300_f3_XFF4834R-XFF4834R_chr42560
    

    

        AC
        XFF4834R_chr42560
    

    

        LT
        XFF4834R_chr42560
    

    

        OR
        XFF4834R_chr from 4934358 to 4937300 on strand +
    

   

        DE
        putative TrwC relaxase
  

   

        IP
        Conjugative relaxase region, N-terminal
  
  
  
  

        CL
        5.4 Genetic exchange, recombination	GO:0006310 
    

  

        EC
        
    

    
    

        GO
        
            InterPro



            Curated

        		
    


  

        PM
        
    

  

        AN
        part of TraI protein? interpro trwC relaxase : Relaxases are DNA strand transferases which function during the conjugative cell to cell DNA transfer. TrwC binds to the origin of transfer (oriT) and melts the double helix. 
    

  

        CC
        COG: [L] Replication, recombination and repair; 
    

    

        CC
        MODEL: XFF4834R 
  
    
  

        CC
        STATUS: curated by darrasse (20120412)
  

  
  


    

        MW
        108185.6 Da
    


    

        SQ
        980 aa
    

    

         
        
........10........20........30........40........50
         |         |         |         |         |
MLNVTPIRGNNQYAAAHYFSAADDYYAKEHPGEWQGQGAQALGLTGPVEQ
AQLSRLLDGQLPNGERIQTTFDPTDNKKRMGLDLTFSAPKSVSMQALVAG
DKDVTAAHDRAVTRALEQVERLAEARKKVNGKSYRERTANMVIGKFRHEM
SRAKDPQLHTHAVVLNMTQRTDGAWRALSNEDIFRVQHEVDALYKAELAR
GLQALGYAIRLVDDQGNFELDHISRDQIEAFSARSRVIEEALANEGKTRA
TATTLEKQIISLATRPRKDESDRELVKQYWVEKSRELGIDYGLRSQLDGR
TYEAGDSFGTRGRERGDAGNRIAAMSLPASLTPAQAVVQYAINHLTEREA
VVRETALTATALRRAVGLAGPDEVRAEIKRLAGQGALIEAVPAYRMADRK
DGPALSSAGWKSYLQELKGWSDKQAQQYVGNAIKQGSLVPAEKRYTTQKA
LAREKAILAIERTGRGAIEPIMTAAAVKTALEGTALNAGQRSAVETIVST
KNRFVGIQGDAGTGKTYTVNQAVALIKQASAVSEGYRTVALAPYGNQVKA
LKNEGLEAHTLASFLRTKDKPIDGKTIIVLDESGVVGARQMEQVMRVVEK
AGARMVLLGDTKQTEAIEAGKPFAQLQQDGMQTARISEIQRQKDHELKTA
VEHAAEGRVTPSLAHIKHVEELKEPIERHRAIVNDYIQLTEPERRETLIV
AGTNEARREINRMVRQSLDLTGKGREFETLTRVDMTQAQRRFAPSYQPGM
VIQPEKDDQKAGLTRGETYRVKEALPGNALVLQRQDGTTTTINPRKATQL
SVYRLERAELSVGDTVRINRNDPGRDLTNGDRMRVAGVIGGVVKLESVEQ
RDGRPARALELPTNRPLHLEHAYASTVHSAQGLTNDRALIALDTKSRTTS
MNLYYVAISRACHQARVYTNSVKELPAAIARRFDKTTALAIQRERQLQRR
AAGMQPKGAADGKQALQRQQLQQGVQRTYV

    






    

        
            
                XFF4834R
            
                
        
YP_361538.1 lcl|XCVc0022

        
1

	
963

	
S=4844 I=96 E=0

	
putative TraI protein

     	

   





    

        
            
                XFF4834R
            
                
        
NP_644759.1 lcl|trwC-XACb0031

        
1

	
962

	
S=4660 I=92 E=0

	
TrwC protein

     	

   





    

        
            
                XFF4834R
            
                
        
 lcl|trwC-XALp_3178

        
17

	
946

	
S=1782 I=44 E=0

	
probable conjugal transfer protein

     	

   





    

        
            
                XFF4834R
            
                
        
 lcl|traI-XALq_3215

        
1

	
943

	
S=1651 I=41 E=0

	
probable mobilization protein trai

     	

   





    

        
                pubmed
        
        

        
1

	
963

	
S=3280 I=65 E=0

	
Putative TraC protein ; Plasmid

	
Pubmed 12534468

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
1

	
963

	
S=3150 I=63 E=0

	
Putative plasmid transfer protein TraC

	
Pubmed 16707697,2175388

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
1

	
963

	
S=3112 I=62 E=0

	
Putative TraC protein ; Plasmid

	
Pubmed 15288784

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
1

	
963

	
S=3112 I=62 E=0

	
Putative TraC protein ; Plasmid

	
Pubmed 10719200

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
14

	
945

	
S=2111 I=50 E=0

	
TrwC ; Plasmid

	
Pubmed 18268088

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
14

	
945

	
S=2099 I=50 E=0

	
Mobilisation protein ; Plasmid

	
Pubmed 18268088

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
14

	
945

	
S=2090 I=50 E=0

	
TrwC ; Plasmid

	
Pubmed 8289274,14625590

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
14

	
945

	
S=2087 I=50 E=0

	
TrwC protein ; Plasmid

	
Pubmed 16391056,7022127

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
1

	
951

	
S=1834 I=44 E=0

	
TraI ; Plasmid

	
Pubmed 16244860

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
1

	
950

	
S=1606 I=40 E=0

	
Conjugal transfer protein ; Plasmid

	
Pubmed 18812424

    

    

         
        
prodomImg

    





    

        
            
                sp_Pdown
            
        
        
sp|P14565|TRAI1_ECOLI

        
1

	
290

	
S=436 I=35 E=8.57513e-44

	
Protein traI EC=3.6.1.- ; Alternative initiation ATP-binding Conjugation DNA-binding Helicase Hydrolase Nucleotide-binding Plasmid

    





    

        
            
                sp_Pdown
            
        
        
sp|P14565|TRAI1_ECOLI

        
411

	
675

	
S=239 I=32 E=6.24878e-20

	
Protein traI EC=3.6.1.- ; Alternative initiation ATP-binding Conjugation DNA-binding Helicase Hydrolase Nucleotide-binding Plasmid

    





    

        
            
                sp_Pdown
            
        
        
sp|P14565|TRAI1_ECOLI

        
630

	
938

	
S=163 I=26 E=1.22427e-10

	
Protein traI EC=3.6.1.- ; Alternative initiation ATP-binding Conjugation DNA-binding Helicase Hydrolase Nucleotide-binding Plasmid

    





    

        
            
                sp_Pdown
            
        
        
sp|P22706|TRAI2_ECOLX

        
14

	
290

	
S=434 I=36 E=1.59251e-43

	
Protein traI EC=3.6.1.- ; ATP-binding Conjugation DNA-binding Helicase Hydrolase Nucleotide-binding Plasmid

    





    

        
            
                sp_Pdown
            
        
        
sp|P22706|TRAI2_ECOLX

        
411

	
675

	
S=238 I=33 E=9.332e-20

	
Protein traI EC=3.6.1.- ; ATP-binding Conjugation DNA-binding Helicase Hydrolase Nucleotide-binding Plasmid

    





    

        Iprscan
        IPR014862
	[PF08751]
	
8

	
291

	
	
TrwC relaxase

    





    

        Iprscan
        IPR014059
	[TIGR02686]
	
15

	
291

	
	
Conjugative relaxase region, N-terminal

    





    

        Iprscan
        
	[seg]
	
35

	
44

	
	
-

    





    

        Iprscan
        
	[seg]
	
349

	
370

	
	
-

    





    

        Iprscan
        
	[seg]
	
964

	
977

	
	
-

    





    

        
            
                
            
                
        
PD018341

        
14

	
290

	
S=486 I=43 E=3.47556e-51

    	
    





    

        
            
                
            
                
        
PDA1O561

        
893

	
962

	
S=284 I=79 E=1.12479e-26

    	
    





    

        
            
                
            
                
        
PDA1Q7A9

        
290

	
348

	
S=238 I=78 E=3.82962e-21

    	
    





    

        
            
                
            
                
        
PD856620

        
698

	
771

	
S=214 I=59 E=3.4107e-18

    	
    





    

        
            
                
            
                
        
PD684234

        
417

	
501

	
S=201 I=53 E=1.00463e-16

    	
    





    

        
            
                
            
                
        
PD005681

        
780

	
892

	
S=179 I=40 E=5.99122e-14

    	
    





    

        
            
                
            
                
        
PDA1Y118

        
666

	
697

	
S=150 I=91 E=1.54581e-10

    	
    





    

        
            
                
            
                
        
PD559128

        
371

	
411

	
S=146 I=71 E=4.76009e-10

    	
    





    

        
            
                
            
                
        
PD293860

        
500

	
576

	
S=137 I=44 E=6.50979e-09

    	
    





    

        
            
                
            
                
        
PDA046R3

        
451

	
616

	
S=114 I=26 E=3.55803e-06

    	
    




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                pubmed
            
        
	    
            
Set of Uniprot with relevant PubMed cross-references ncbi-blastp

        		
 	    
            99 hits
        
    

    

        
            
                swiss-prot
            
        
	    
            
Swiss-Prot ncbi-blastp

        		
 	    
            9 hits
        
    

    
    
    

        
            
                XFF4834R
            
        
    	
            
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp

        		        
        
            0 hits
        
    

        
    

        
            
                hamap
            
        
	
            
HAMAP scan

        		        
        
            0 hits
        
    

    
    

	    
            
                Interpro Scan
            
            
	        
                
IprScan

            		        
            
                5 hits
            
    








Show or not Miscellaneous analyses




    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetLocalBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBmDVR1W/XFF4834R_chr42560.xml_fasta", "https://iant.toulouse.inra.fr/bacteria/annotation/web/img/XFF4834R.png"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    
    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetNcbiBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBmDVR1W/XFF4834R_chr42560.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetUniprotBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBmDVR1W/XFF4834R_chr42560.xml_fasta"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetKeggBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBmDVR1W/XFF4834R_chr42560.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    

    






XFF4834R_pla00270




    

        
             
            XFF4834R_pla00510
            
XFF4834R_pla00510
            
        		
       
       
           
	   Cluster
	   
DrawMap
	   
        		
	
        
            XML file
        	


	    FASTA file
        		
    
            
            Framed
            
        
  		
	
             
            Extract
Sequence
            
        		


	
             
            XFF4834R_pla00290
            
XFF4834R_pla00290
            
        		

    





    

        ID
        
    


    

        AC
        XFF4834R_pla00270
    


    

        LO
        XFF4834R_pla00270
    


    

        DE
        putative conjugal transfer protein TrbG C-terminal fragment, pseudogene
    


    

        CL
        5.4 Genetic exchange, recombination	GO:0006310 
    

    

        GO
        
            InterPro



            Curated

        		
    

    

        PM
        
    

  

        AN
        trbG which is interrupted by the IS XFF4834R_pla00290, the C-terminal part of the gene is XFF4834R_pla00300
    

  
    

        CC
        MODEL:  
  

   

        CC
        STATUS: curated by carrere (20111020)
   

    

        SQ
        648 nt
    

    

         
        
........10........20........30........40........50
         |         |         |         |         |
ATCGGGAGATGATGTCCGGATCGCGCCGAAAATGGTGCAAATTCCGACTA
TTCAAACGCAGCTCCTTGGAGAAATGCACCTCCCGCGTCCTCAGCTCTCA
TTAATCAGACCATCCTTAGCCAGGTCACCAGCGGCACCGATGCCGGCGAG
CAAGTGCATCTGGTGCTCAAGGCGGTGGAGCCAGGTCTGACCAACGACCT
CTTCATTGCCACCAATCGGCGCACCTACCTGGTCACCGCGCGCAGCGTGG
CCGATTGGAGCATGCCCAGCGTGTCGTGGCAGTACCCGATGGACACCTGG
AAGGCCCAGCAAGCCGTGGCGGCCAAGCGCGAAGCCGTCCAGCCTGTGGC
AGTCGCCCCGGATGCATTGCACTTCAACTACGACATCAAGGGCGGCCGCT
ACTCCTGGAAGCCAATGCAAGTCTTTGACGATGGCGCGCAAACCTATATC
CGCATGCCGGCCACGCTCAATGCGACCGATGCCCCGGCGCTGTTCCTGAT
CGAGAAGGGCGAACCGTTGCTGGTGAACTACCGCGTCAAAGGCGTGGCGA
ACGGCACCACCGGCCCGACCTACATCGTAGATCGCGTGTTTGATCGCGCC
GAGCTGCGCGTGGGTGCGAAGCAAACCATCACGATCCGCCGTCGCTAA

    





Show or not Domain decomposition
 

    

        Iprscan
        IPR010258
	[PF03524]
	
46

	
210

	
	
Conjugal transfer, TrbG/VirB9/CagX

    





    

        Iprscan
        
	[seg]
	
61

	
71

	
	
-

    





    

        Iprscan
        
	[seg]
	
89

	
102

	
	
-

    





    

        Iprscan
        
	[seg]
	
9

	
26

	
	
-

    





    

        Iprscan
        
	[seg]
	
51

	
64

	
	
-

    





    

        Iprscan
        
	[seg]
	
166

	
182

	
	
-

    





    

        Iprscan
        
	[seg]
	
12

	
23

	
	
-

    





    

        Iprscan
        
	[seg]
	
13

	
24

	
	
-

    





    

        Iprscan
        
	[seg]
	
5

	
16

	
	
-

    





    

        Iprscan
        
	[SignalP-NN(euk)]
	
1

	
16

	
	
-

    





    

        Iprscan
        
	[SignalP-NN(euk)]
	
1

	
18

	
	
-

    




Show or not Suggestions
Suggest an annotation


Move your mouse over each field to get more informations


ID


DE


EC


GO


PM



CC


CL

 
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  Validation code (copy this one 0jkYjUID)  
 
     



Show or not Access unfiltered results






    

       
            
                pubmed
            
        
	    
            
Set of Uniprot with relevant PubMed cross-references ncbi-blastx

        		
 	    
            0 hits
        
    

    

        
            
                swiss-prot
            
        
	    
            
Swiss-Prot ncbi-blastx

        		
 	    
            0 hits
        
    

    
   

    

        
            
                trembl
            
        
    	
            
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastx

        		        
        
            0 hits
        
    

                
    

	    
            
                Interpro Scan
            
            
	        
                
IprScan

            		        
            
                11 hits
            
    








Show or not Miscellaneous analyses




    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetLocalBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBmDVR1W/XFF4834R_pla00270.xml_fasta", "https://iant.toulouse.inra.fr/bacteria/annotation/web/img/XFF4834R.png"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    
    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetNcbiBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBmDVR1W/XFF4834R_pla00270.xml_fasta", "blastx"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetUniprotBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBmDVR1W/XFF4834R_pla00270.xml_fasta"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetKeggBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBmDVR1W/XFF4834R_pla00270.xml_fasta", "blastx"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    


    
    





XFF4834R_pla00300




    

        
             
            XFF4834R_pla00270
            
XFF4834R_pla00270
            
        		
       
       
           
	   Cluster
	   
DrawMap
	   
        		
	
        
            XML file
        	


	    FASTA file
        		
    
            
            Framed
            
        
  		
	
             
            Extract
Sequence
            
        		


	
             
            XFF4834R_pla00310
            
XFF4834R_pla00310
            
        		

    





    

        ID
        
    


    

        AC
        XFF4834R_pla00300
    


    

        LO
        XFF4834R_pla00300
    


    

        DE
        putative conjugal transfer protein TrbG N-terminal fragment, pseudogene
    


    

        CL
        5.4 Genetic exchange, recombination	GO:0006310 
    

    

        GO
        
            InterPro



            Curated

        		
    

    

        PM
        
    

  

        AN
         trbG is interrupted by the IS XFF4834R_pla00290.
    

  
    

        CC
        MODEL:  
  

   

        CC
        STATUS: curated by carrere (20111021)
   

    

        SQ
        527 nt
    

    

         
        
........10........20........30........40........50
         |         |         |         |         |
ATGCAAACCATGAAGACGACCGTTCTGCCGTTGCTGTTGTTGTCCGCCGG
CATCGCCAATGCCCAAACTACGCCACAGGTGCCCGCGATCACCAGCGCGC
TCAACGACAACAGCACGGCGACCGCCAATGCGACCCCGTTGGCCAACAAC
GCCCCCGCTCCCGCACCCGCCTATGTGCCGCCGCCCTTGCAGCCGGAGCA
TGTCTCGCCGCGCGTCGCCAAAGCGCGGTCTGACTTCGACAGCAAGCAGC
GCGCCCAGGTGGCCGAGTACGTCGGCCAGGCACGGCAAGTGCCGACCAGC
TCCAGCACGGCCAATGTGGGCGGACAGACGATCTTTACCTATCGGCCTGG
TGCGCTCTATACGATCTATGTCGGCGCCGGCCGTCAGACCGTTATCGACT
TCCAGCCAGGCGAACAGCTGACGGGCGAAGTCAACGGCTCCGATACGGTG
CGGTGGCTCATTAGGGAAGGTCTGATCAACTCACCACAGATGCGCGACAC
TACCGTCTCATGTAGAGGACTCATCCA

    





Show or not Domain decomposition
 

    

        Iprscan
        IPR010258
	[PF03524]
	
111

	
156

	
	
Conjugal transfer, TrbG/VirB9/CagX

    





    

        Iprscan
        
	[seg]
	
39

	
65

	
	
-

    





    

        Iprscan
        
	[seg]
	
1

	
12

	
	
-

    





    

        Iprscan
        
	[seg]
	
24

	
69

	
	
-

    





    

        Iprscan
        
	[seg]
	
7

	
18

	
	
-

    





    

        Iprscan
        
	[seg]
	
26

	
42

	
	
-

    





    

        Iprscan
        
	[seg]
	
56

	
72

	
	
-

    





    

        Iprscan
        
	[seg]
	
2

	
15

	
	
-

    





    

        Iprscan
        
	[seg]
	
99

	
133

	
	
-

    





    

        Iprscan
        
	[seg]
	
140

	
154

	
	
-

    





    

        Iprscan
        
	[seg]
	
20

	
33

	
	
-

    





    

        Iprscan
        
	[seg]
	
37

	
62

	
	
-

    





    

        Iprscan
        
	[seg]
	
5

	
19

	
	
-

    





    

        Iprscan
        
	[SignalP-NN(euk)]
	
1

	
21

	
	
-

    





    

        Iprscan
        
	[SignalP-NN(euk)]
	
1

	
17

	
	
-

    





    

        Iprscan
        
	[SignalP-NN(euk)]
	
1

	
20

	
	
-

    




Show or not Suggestions
Suggest an annotation


Move your mouse over each field to get more informations


ID


DE


EC


GO


PM



CC


CL

 
  Your email  
 
  Validation code (copy this one t4cL7lQd)  
 
     



Show or not Access unfiltered results






    

       
            
                pubmed
            
        
	    
            
Set of Uniprot with relevant PubMed cross-references ncbi-blastx

        		
 	    
            0 hits
        
    

    

        
            
                swiss-prot
            
        
	    
            
Swiss-Prot ncbi-blastx

        		
 	    
            0 hits
        
    

    
   

    

        
            
                trembl
            
        
    	
            
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastx

        		        
        
            0 hits
        
    

                
    

	    
            
                Interpro Scan
            
            
	        
                
IprScan

            		        
            
                16 hits
            
    








Show or not Miscellaneous analyses




    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetLocalBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBmDVR1W/XFF4834R_pla00300.xml_fasta", "https://iant.toulouse.inra.fr/bacteria/annotation/web/img/XFF4834R.png"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    
    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetNcbiBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBmDVR1W/XFF4834R_pla00300.xml_fasta", "blastx"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetUniprotBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBmDVR1W/XFF4834R_pla00300.xml_fasta"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetKeggBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBmDVR1W/XFF4834R_pla00300.xml_fasta", "blastx"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    


    
    





XFF4834R_plb00180




    

        
             
            XFF4834R_plb00200
            
XFF4834R_plb00200
            
        		
       
       
           
	   Cluster
	   
DrawMap
	   
        		
	
        
            XML file
        	


	    FASTA file
        		
    
            
            Framed
            
        
  		
	
             
            Extract
Sequence
            
        		


	
             
            XFF4834R_plb00190
            
XFF4834R_plb00190
            
        		

    





    

        ID
        
    


    

        AC
        XFF4834R_plb00180
    


    

        LO
        XFF4834R_plb00180
    


    

        DE
        putative TraD protein pseudogene
    


    

        CL
        5.4 Genetic exchange, recombination	GO:0006310 
    

    

        GO
        
            InterPro



            Curated

        		
    

    

        PM
        
    

  

        AN
        Frameshift at position 017447 (previously XFF4834R_plb_0024 and 0025). Orthologous gene is for instance traD in Xanthomonas arboricola pv. pruni str. CFBP 5530. 
    

  
    

        CC
        MODEL:  
  

   

        CC
        STATUS: curated by carrere (20111021)
   

    

        SQ
        1595 nt
    

    

         
        
........10........20........30........40........50
         |         |         |         |         |
ATGACGGTTGGGCAACTTCTGACGCTGGGCTTTTTGGGCGTCCCTGCCTT
GGCCCTGGTACGCACCATCCTGGCCGCTGCACGCGGCAAGATGCGGTCTT
CGCCGATCGCCTGGGCATGGATAGGCGTTTGGTCGGTGGCAGTGGTCTAC
GGCATTGGTTCGACCGCCCTACGGTTTGCCAAGGATGGCAAGCCGTCCAC
CCTGCTCGCGTTCGGCGTTGCGGCTATCTCCGTGTTCTGCTGGGTCCGCA
TGTTCCGGCACCTGGAAGCAAGCGCCGCAAGACAGAACCGGGAAAGGGTC
GTTCGGGGACGCAAGTCGTCGCGGGGAAGGCCCTGCAAGCCGGCATGCAC
GGCAGCAAGGCCAGGCCCGCCGACGTGGACATAGAGATTGGCGGGGTGGT
GCTTCCGCGCATGCTGGAAGCGCAGCACATGCTGTTTGCAGGCACTACCG
GGGCCGGCAAGACGCAAGCGATTAACCGCGTCCTGCGCGCTGTACGTCAA
CGCGGCGAACGCGCGTTGATTGCCGATCCGGCGGGAGGTTTCTTCTCGCG
CTTCGCGCGTTCCGGCGACCTGTTGTTCAACCCCTTTGACGGGCGCACGG
TGGATTGGTCGCCGTTCGCTGAAATCAGGCACGACTACGATTGCCAGAGG
ATCGCCAAGGCTGCCGTGCCGGACGGCACGGGCGAGGGGGCCGAATGGCA
CCACTACGCGCAAACCTTGCTCGGTGAGACCATGCTCGCGCTGCACCGGA
ACGGTGAGCACTCGGTGAAACGTCTGCTCCACTTCGTGAGCGCGGCCGAA
ACGAAGGAACTAGCCGCCCTGCTCGCCGGCACGCCTGCCGCCATCCTGAC
GGCCAAGGGCAATGACAAGATGCTCAACAACACGCGGGGCATCATCGCCA
CCTACCTGGGGGCCTGGCGGTATCTACCGGACGCGGGCAGCTTCTCCGTT
CGCTCCTGGGTACAGGACGAAGGGGGCGACGGTTGGCTGTTCGTGACGTA
CCGGGACGATCAAATGGGCCTCCTGCGCGGCCTGGTCGCCTCGATCTTGG
AGCTGGGCATTGTCGAAGGTCTGAGCTTGTCCGAAAGCCCGAACCGAGCG
CTGTGGTACGTGTTCGATGAGGTCGACTCGCTCGGCAAAGTGTCGAGTTT
GCGCGGTGGACTGACCAAGCTGCGCAAGTACGGTGGGCGGTGCGTCCTGG
GCCTGCAAACGGTGTCGCAGCTCCGAGAAACCTACGGCCGCGACGAAGCC
CAAACGCTACTGGCTAACCTTTCAACCAAGTTGATTTTGCGCGCGGGTGA
CAACGAAACGGCCGAGTATTTCAGCAAAGAACTAGGCGAACAGGACGTTG
ATCGCCTTCAAATGACGACAGGACAAGGAACGAACTCCGGGGGCCTGTTC
AACCCTTCGCAATCCTCACAATCGGCAAACACCAGCTTCAATTTGCAGCG
GGTGCGCCAAGCGGCGGTCATGTCGTCAGAGATCCTCAACCTGCCCGATC
TGGAAGGCTTCTTGAAAATGCCAGGCCAGCCAGTGGGGGCCGTGACGATC
GCATATGAGGGGATGCCGGAGCTTCAGCCGGGCTTTGTGGCCTAG

    





Show or not Domain decomposition
 

    

        Iprscan
        
	[G3DSA:3.40.50.300]
	
83

	
530

	
	
-

    





    

        Iprscan
        
	[PF10412]
	
127

	
515

	
	
-

    





    

        Iprscan
        
	[seg]
	
97

	
110

	
	
-

    





    

        Iprscan
        
	[seg]
	
73

	
87

	
	
-

    





    

        Iprscan
        
	[seg]
	
91

	
103

	
	
-

    





    

        Iprscan
        
	[seg]
	
21

	
31

	
	
-

    





    

        Iprscan
        
	[seg]
	
11

	
24

	
	
-

    





    

        Iprscan
        
	[seg]
	
20

	
40

	
	
-

    





    

        Iprscan
        
	[seg]
	
270

	
275

	
	
-

    





    

        Iprscan
        
	[seg]
	
3

	
16

	
	
-

    





    

        Iprscan
        
	[seg]
	
70

	
83

	
	
-

    





    

        Iprscan
        
	[seg]
	
61

	
74

	
	
-

    





    

        Iprscan
        
	[seg]
	
5

	
17

	
	
-

    





    

        Iprscan
        
	[seg]
	
22

	
35

	
	
-

    





    

        Iprscan
        
	[seg]
	
26

	
37

	
	
-

    





    

        Iprscan
        
	[SignalP-NN(euk)]
	
1

	
18

	
	
-

    





    

        Iprscan
        
	[SignalP-NN(euk)]
	
1

	
17

	
	
-

    





    

        Iprscan
        
	[SignalP-NN(euk)]
	
1

	
19

	
	
-

    





    

        Iprscan
        
	[SignalP-NN(euk)]
	
1

	
16

	
	
-

    





    

        Iprscan
        
	[SignalP-NN(euk)]
	
1

	
15

	
	
-

    





    

        Iprscan
        
	[SignalP-NN(euk)]
	
1

	
23

	
	
-

    





    

        Iprscan
        
	[SignalP-NN(euk)]
	
1

	
15

	
	
-

    





    

        Iprscan
        
	[SignalP-NN(euk)]
	
1

	
22

	
	
-

    





    

        Iprscan
        
	[SignalP-NN(euk)]
	
1

	
19

	
	
-

    





    

        Iprscan
        
	[tmhmm]
	
5

	
24

	
	
-

    





    

        Iprscan
        
	[tmhmm]
	
36

	
58

	
	
-

    





    

        Iprscan
        
	[tmhmm]
	
68

	
85

	
	
-

    





    

        Iprscan
        
	[SSF52540]
	
141

	
510

	
	
-

    




Show or not Suggestions
Suggest an annotation


Move your mouse over each field to get more informations


ID


DE


EC


GO


PM



CC


CL

 
  Your email  
 
  Validation code (copy this one tDtocpeO)  
 
     



Show or not Access unfiltered results






    

       
            
                pubmed
            
        
	    
            
Set of Uniprot with relevant PubMed cross-references ncbi-blastx

        		
 	    
            0 hits
        
    

    

        
            
                swiss-prot
            
        
	    
            
Swiss-Prot ncbi-blastx

        		
 	    
            0 hits
        
    

    
   

    

        
            
                trembl
            
        
    	
            
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastx

        		        
        
            0 hits
        
    

                
    

	    
            
                Interpro Scan
            
            
	        
                
IprScan

            		        
            
                28 hits
            
    








Show or not Miscellaneous analyses




    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetLocalBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBmDVR1W/XFF4834R_plb00180.xml_fasta", "https://iant.toulouse.inra.fr/bacteria/annotation/web/img/XFF4834R.png"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    
    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetNcbiBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBmDVR1W/XFF4834R_plb00180.xml_fasta", "blastx"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetUniprotBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBmDVR1W/XFF4834R_plb00180.xml_fasta"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetKeggBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBmDVR1W/XFF4834R_plb00180.xml_fasta", "blastx"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    


    
    





XFF4834R_plc00180




    

        
             
            XFF4834R_plc00480
            
XFF4834R_plc00480
            
        		
       
       
           
	   Cluster
	   
DrawMap
	   
        		
	
        
            XML file
        	


	    FASTA file
        		
    
            
            Framed
            
        
  		
	
             
            Extract
Sequence
            
        		


	
             
            XFF4834R_plc00290
            
XFF4834R_plc00290
            
        		

    





    

        ID
        
    


    

        AC
        XFF4834R_plc00180
    


    

        LO
        XFF4834R_plc00180
    


    

        DE
        putative mobilization protein TraI pseudogene
    


    

        CL
        5.4 Genetic exchange, recombination	GO:0006310 
    

    

        GO
        
            InterPro



            Curated

        		
    

    

        PM
        
    

  

        AN
        Frameshift at position 013162 (previously XFF4834R_plc_0051 and 0052). Orthologous gene in Xanthomonas is XALq3215.
    

  
    

        CC
        MODEL:  
  

   

        CC
        STATUS: curated by carrere (20111021)
   

    

        SQ
        2870 nt
    

    

         
        
........10........20........30........40........50
         |         |         |         |         |
ATGATCGATATCACCGTCATCACGCGCCAGTCGGTCGGCAAAGTCGTGTC
CTACTATGCCGACGGCGCCGATGACTACTACGCCAAGGACGGCACGGCGA
TGCAATGGCAGGGCGAGGGAGCGGCCGCCCTCGGGCTGGAGGGTGAAGTC
GACCGCAAACGGTTCGGCGAGCTCCTGGATGGCCGCATTGATGAGCACAC
TCGCACGCGTCGCATTCCCCCGACCGCCGAAGCTGCCCGCAAGGAGCGAC
TGGCCTACGACCTGACGTTCAGTGCCCCAAAGGGTGTGTCCCTGCAGGCT
TTGGTCCACGGAGACCGCCGTATCGTCGAGGCACATGAGCGTGCCGTCGC
CGCAGCTGTGCGCGAAGCCGAACATTTGGCGATGGCCAGGTCGACGAACA
ACAAAAAAACCAGCGTCGAACATACGGGAAAACTGGTGGTAGCGAAGTTT
CGCCACGAGACCTCGCGTGCGCTCGATCCTGATCTGCATACCCATGCCGT
CGTACTGAATCTGACCCAGCGGGCCGATGGCCAGTGGCGCGCGCTCACCA
GCGACGGCATCGTCAAATCGCTGCGTCACTTGGGCAACGTCTACAAATCA
GAGCTGGCCCGCGAGTTGGAGAAAGCTGGCTTTACGCTTCGCTACGACCG
CAACGGTACGTTCGATTTGGCGCACTTCACTGAACATCAAATCCGAGAGT
TCAGCGCCCGCAGCCAGCAGATTGAGGCGGCCTTGGCGGCCAAGGGGCTC
AACCGCGAGACCGCAACCCATGCCGAGAAGAACCAAGCTGCCCTTTCTAC
GCGCCAGCGCAAGGTTGAAGTCAACCGTGAAGCGGTCCGGCAGGAGTGGC
AGAAGCGCGCGGGCGACCTTGCCATCGACTTTCACAGTCGGCAGTGGGAG
GGCGCCGGCCGGGATGACGTCGACGATCGCGCCAAGCGGCTACCACCGAA
GGAAATCGAAAAGCCACTTGAGCACCATGCCGACAAGGCCGTCCAGTTCG
CGATCAAATCGCTGACAGAGCGCAACGCCATCGTGAAAGAGTCCGCGCTC
TTGGAGGTAGCGTTGACACACGGGTTCGGGCGATTGACGACCCGGGACGT
TCGGGGCGCGCTTGATCGGGCTACCCGGTCCGGGCATCTCATTCGTGATC
TGCCCGTCTATGTCTCTATGAATCCCGCCGACAAGAAGAAGGCAACGCAA
AAGATGGTCCGGCGCTCTCTCGCCAAGAGTGGGTCGCCACGCTGCAAGCC
AGTGGTAAGTCGAAAGCCGAGGCGATGCGTCTGGTCGACATGGGGGTGCG
TAGCGGGCGTCTTGAGAAGCAGGAACCGCGCTTCACGACCCACATCGCGC
AGAAGCGAGAACGGGACATCCTGCAGACGGAACAACGCAATCGGGGCGTG
ATGCAAAGCCGGATTTCGTCCGAAATCTCGCTTGCTTTCCTGGCCGACAA
ATCGCTGAACGACGAGCAGCGCCGCGCAGTGCAGCACATTGTGGAAAGCA
CAAACCGCTTCATAGGCGTCCAGGGATATGCCGGCACTGGCAAGACCCAC
ATGACTAAGGCCGCCAGAGATCTTCTCGAGGCCAACGGCTTTCACGTCAT
CACTATGGCGCCGTACGGGTCGCAGAAAAAGGCCCTGGAAGAGGCCGGCC
TGGAAAGCAGCACGGTGCAAGCATTCCTGCGCGCCAAGGACAAGAAGATC
GATGAAAACAGCGTTGTCTTCGTTGACGAGGCGGGCGTTATTCCAGCGCG
TCAGATGCTCGAAATCATGAGAACGATCGAGGCGCATGGCGCCCGTGCCG
TCTTTCTCGGAGACATCGCCCAAACCAAGGCAATCGAGGCTGGCAAACCA
TTCGATCAGCTGCAGAAAGCCGGCATGGAGACTGCACGCTTGGTCGAAAT
TCGCCGGCAACAAGATCCGCAACTTTTGGAAGCCGTCAAGTTGGCTGCTG
AGGGGCAGTCAACAAAATCCGTGGCTAATATCCGCCAGATACTGACGGAG
AAGGAACCGGATCTGCGGTACAGCAGGATCGTCAAGCACTACGCCGAGCT
GCCCAAGCACGACCGTGATCAGACCCTCATCATCACGGGCACCAATGAAA
GCCGTAAGGCGCTGAATGATGGTGTACGGGAGGCCCTAGGCATGAAAGGG
CGGGGGGAGGAGTACAAGTTACTCAATCGCCTGGACACGACCCAGGCCGA
GCGCCAGCACAGTCGCTACTACGAGAAAGGTAGCGTAATCGTGCCAGAGC
GAAGCTACGCAAATGGCCTGCAGCGCGGTGAATACTACACGGTGATCGAC
ACTGGCCCGGGCAATCGTTTGACAGTGCGCAACGAGGCTGGCCAGCAGAT
CCAGTTCTCACCGATGCGCTGCCCCAAGCTCAGTGTTTACAGCGTGGAGA
GGACGGAATTAGCGGTGGGCGACCAAGTGAAGGTCACCCGCAACAATGCC
GACCTCGATCTTGCTAACGGTGATCGTTTCGTCGTTCATCGCGTCGGCAG
GCAGGAGATCGAACTGAGGGGACAGGATGGCCGCCGTATCACATTCGACG
CAAGGACGCCGATGTTCGTCGGTCTAGCCTACGCATCCACCGTCCATAGC
TCGCAGGGACTAACCTGCGGCACGGTATTGATCAATATCGAAACGAAATC
ACGGACTACCACCAAGGATGTCTACTACGTCGGCGTCTCGCGGGCACGCA
ACGAGGCGATCATCTACACCGACGACTCCGGCAAGTTGGCCAAAGCCATT
AGCCGTGACAGCCTGAAGACGGCCGCGCTCGAAATAAAAAAACTTGCTGG
ACACGCAATCGATCGGACGCTCAAGACGCATTCGGGTCCAAGTGACCACC
AAATGGGCGTTGGCCGTTAG

    





Show or not Domain decomposition
 

    

        Iprscan
        IPR014862
	[PF08751]
	
10

	
293

	
	
TrwC relaxase

    





    

        Iprscan
        
	[PF01443]
	
439

	
524

	
	
-

    





    

        Iprscan
        IPR014059
	[TIGR02686]
	
17

	
294

	
	
Conjugative relaxase protein, N-terminal domain

    





    

        Iprscan
        
	[seg]
	
18

	
33

	
	
-

    





    

        Iprscan
        
	[seg]
	
38

	
49

	
	
-

    





    

        Iprscan
        
	[seg]
	
106

	
129

	
	
-

    





    

        Iprscan
        
	[seg]
	
18

	
37

	
	
-

    





    

        Iprscan
        
	[seg]
	
7

	
23

	
	
-

    





    

        Iprscan
        
	[seg]
	
23

	
35

	
	
-

    





    

        Iprscan
        
	[seg]
	
1

	
14

	
	
-

    





    

        Iprscan
        
	[seg]
	
16

	
32

	
	
-

    





    

        Iprscan
        
	[seg]
	
107

	
117

	
	
-

    





    

        Iprscan
        
	[seg]
	
153

	
164

	
	
-

    





    

        Iprscan
        
	[seg]
	
1

	
13

	
	
-

    





    

        Iprscan
        
	[seg]
	
15

	
28

	
	
-

    





    

        Iprscan
        
	[seg]
	
12

	
23

	
	
-

    





    

        Iprscan
        
	[seg]
	
10

	
23

	
	
-

    





    

        Iprscan
        
	[seg]
	
33

	
46

	
	
-

    





    

        Iprscan
        
	[seg]
	
1

	
11

	
	
-

    





    

        Iprscan
        
	[seg]
	
19

	
31

	
	
-

    





    

        Iprscan
        
	[seg]
	
169

	
183

	
	
-

    





    

        Iprscan
        
	[seg]
	
14

	
27

	
	
-

    





    

        Iprscan
        
	[seg]
	
25

	
36

	
	
-

    





    

        Iprscan
        
	[seg]
	
58

	
71

	
	
-

    





    

        Iprscan
        
	[seg]
	
39

	
54

	
	
-

    





    

        Iprscan
        
	[seg]
	
57

	
80

	
	
-

    





    

        Iprscan
        
	[seg]
	
45

	
58

	
	
-

    





    

        Iprscan
        
	[seg]
	
21

	
34

	
	
-

    





    

        Iprscan
        
	[seg]
	
63

	
87

	
	
-

    





    

        Iprscan
        
	[seg]
	
64

	
88

	
	
-

    





    

        Iprscan
        
	[seg]
	
15

	
48

	
	
-

    





    

        Iprscan
        
	[SignalP-NN(euk)]
	
1

	
23

	
	
-

    





    

        Iprscan
        
	[SignalP-NN(euk)]
	
1

	
11

	
	
-

    





    

        Iprscan
        
	[SignalP-NN(euk)]
	
1

	
18

	
	
-

    





    

        Iprscan
        
	[SignalP-NN(euk)]
	
1

	
27

	
	
-

    





    

        Iprscan
        
	[SignalP-NN(euk)]
	
1

	
22

	
	
-

    





    

        Iprscan
        
	[SignalP-NN(euk)]
	
1

	
21

	
	
-

    





    

        Iprscan
        
	[SignalP-NN(euk)]
	
1

	
60

	
	
-

    





    

        Iprscan
        
	[SignalP-NN(euk)]
	
1

	
44

	
	
-

    





    

        Iprscan
        
	[tmhmm]
	
4

	
23

	
	
-

    





    

        Iprscan
        
	[tmhmm]
	
44

	
66

	
	
-

    





    

        Iprscan
        
	[SSF55464]
	
1

	
313

	
	
-

    





    

        Iprscan
        
	[SSF52540]
	
101

	
527

	
	
-

    




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Show or not Access unfiltered results






    

       
            
                pubmed
            
        
	    
            
Set of Uniprot with relevant PubMed cross-references ncbi-blastx

        		
 	    
            0 hits
        
    

    

        
            
                swiss-prot
            
        
	    
            
Swiss-Prot ncbi-blastx

        		
 	    
            0 hits
        
    

    
   

    

        
            
                trembl
            
        
    	
            
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastx

        		        
        
            0 hits
        
    

                
    

	    
            
                Interpro Scan
            
            
	        
                
IprScan

            		        
            
                43 hits
            
    








Show or not Miscellaneous analyses




    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetLocalBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBmDVR1W/XFF4834R_plc00180.xml_fasta", "https://iant.toulouse.inra.fr/bacteria/annotation/web/img/XFF4834R.png"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    
    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetNcbiBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBmDVR1W/XFF4834R_plc00180.xml_fasta", "blastx"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetUniprotBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBmDVR1W/XFF4834R_plc00180.xml_fasta"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetKeggBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBmDVR1W/XFF4834R_plc00180.xml_fasta", "blastx"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    •