5 hits
XFF4834R_chr18650 | tldD | XFF4834R_chr18650 | probable peptidase TldD |
XFF4834R_chr18670 | tldE | XFF4834R_chr18670 | probable peptidase TldE (PmbA) |
XFF4834R_chr22210 | XFF4834R_chr24170719_2568318_f1_XFF4834R-XFF4834R_chr22210 | XFF4834R_chr22210 | putative O-methyltransferase |
XFF4834R_chr26010 | XFF4834R_chr_3005234_3005890_f2_XFF4834R-XFF4834R_chr26010 | XFF4834R_chr26010 | putative HNH nuclease |
XFF4834R_chr42450 | XFF4834R_chr_4927858_4928139_f1_XFF4834R-XFF4834R_chr42450 | XFF4834R_chr42450 | putative toxin of the YafQ-DinJ toxin-antitoxin system |
![]() XFF4834R_chr18640 |
![]() DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
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![]() |
![]() XFF4834R_chr_2000 |
ID | tldD |
AC | XFF4834R_chr18650 |
LT | XFF4834R_chr18650 |
OR | XFF4834R_chr from 2135361 to 2136806 on strand + |
DE | probable peptidase TldD |
IP | Peptidase U62, modulator of DNA gyrase |
CL | 5.10 Defense/survival GO:0006952 |
EC | |
GO |
InterPro Curated |
PM | |
AN | tldD is annotated predicted peptidase in GenProtEC (Putative modulator of DNA gyrase) 2 physiological roles in GenProtEC Information transfer --> Protein related --> Export, signal peptide cleavage Cell processes --> Defense/survival Microcin B17 (MccB17) is a peptide antibiotic produced by Escherichia coli strains carrying the pMccB17 plasmid. MccB17 is synthesized as a precursor containing an amino-terminal leader peptide that is cleaved during maturation. Maturation requires the product of the chromosomal tldE (pmbA) gene. Mature microcin is exported across the cytoplasmic membrane by a dedicated ABC transporter. In sensitive cells, MccB17 targets the essential topoisomerase II DNA gyrase. Independently, tldE as well as tldD mutants were isolated as being resistant to CcdB, another natural poison of gyrase encoded by the ccd poison-antidote system of plasmid F. This led to the idea that TldD and TldE could regulate gyrase function. We present in vivo evidence supporting the hypothesis that TldD and TldE have proteolytic activity. We show that in bacterial mutants devoid of either TldD or TldE activity, the MccB17 precursor accumulates and is not exported. Similarly, in the ccd system, we found that TldD and TldE are involved in CcdA and CcdA41 antidote degradation rather than being involved in the CcdB resistance mechanism. Interestingly, sequence database comparisons revealed that these two proteins have homologues in eubacteria and archaebacteria, suggesting a broader physiological role. |
CC | COG: [R] General function prediction only; |
CC | MODEL: XFF4834R |
CC | STATUS: curated by darrasse (20120307) |
MW | 50710.6 Da |
SQ | 481 aa |
........10........20........30........40........50 |
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XFF4834R_chr01320 lcl|XFF4834R_chr_0163473_0165101_f3_XFF4834R-XFF4834R_chr01320 |
236 |
479 |
S=192 I=30 E=1.29996e-16 |
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XFF4834R_chr01330 lcl|XFF4834R_chr01440794_0167428_f2_XFF4834R-XFF4834R_chr01330 |
229 |
479 |
S=179 I=28 E=5.66872e-15 |
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XFF4834R_chr18670 lcl|pmbA-XFF4834R_chr18670 |
66 |
444 |
S=152 I=25 E=1.09691e-11 |
predicted peptidase required for the maturation and secretion of the antibiotic peptide MccB17 |
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NP_643076.1 lcl|tldD-XAC2767 |
1 |
481 |
S=2367 I=96 E=0 |
TldD protein |
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YP_364654.1 lcl|tldD-XCV2923 |
1 |
481 |
S=2365 I=96 E=0 |
putative modulator of DNA gyrase TldD |
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NP_637954.1 lcl|tldD-XCC2606 |
1 |
481 |
S=2294 I=92 E=0 |
TldD protein |
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1 |
479 |
S=2083 I=83 E=0 |
putative modulator of dna gyrase protein |
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NP_635490.1 lcl|tldD-XCC0095 |
219 |
479 |
S=199 I=30 E=7.0313e-17 |
TldD protein |
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NP_640478.1 lcl|tldD-XAC0122 |
244 |
479 |
S=188 I=29 E=1.59443e-15 |
TldD protein |
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YP_361824.1 lcl|XCV0093 |
236 |
479 |
S=187 I=30 E=2.05312e-15 |
putative modulator of DNA gyrase |
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NP_635489.1 lcl|tldD-XCC0094 |
229 |
479 |
S=184 I=28 E=5.79439e-15 |
TldD protein |
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YP_361823.1 lcl|XCV0092 |
229 |
479 |
S=178 I=28 E=2.39998e-14 |
putative modulator of DNA gyrase |
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NP_640477.1 lcl|tldD-XAC0121 |
229 |
479 |
S=178 I=28 E=2.39998e-14 |
TldD protein |
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5 |
479 |
S=1445 I=59 E=3.20084e-166 |
Protein tldD |
Pubmed 8604133 |
|
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5 |
479 |
S=1430 I=59 E=2.29431e-164 |
Putative DNA gyrase modulator |
Pubmed 16177365 |
|
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23 |
481 |
S=1250 I=54 E=1.39449e-142 |
Peptidase U62 |
Pubmed 18459973 |
|
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35 |
481 |
S=1182 I=54 E=2.68713e-134 |
TldD |
Pubmed 8825087 |
|
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373 |
447 |
S=305 I=79 E=4.89754e-28 |
Hypothetical tldD protein |
Pubmed 11587856 |
|
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50 |
446 |
S=299 I=27 E=2.15617e-27 |
Peptidase U62 |
Pubmed 18459973 |
|
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258 |
480 |
S=229 I=31 E=6.53815e-19 |
CalR6 |
Pubmed 12183629 |
|
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222 |
480 |
S=170 I=29 E=9.45663e-12 |
LmbIH |
Pubmed 11816970 |
|
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222 |
454 |
S=128 I=24 E=1.18133e-06 |
Protein pmbA ; Cytoplasm |
||
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222 |
328 |
S=117 I=38 E=2.43382e-05 |
LmbI protein |
Pubmed 8577249 |
|
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IPR002510 [PF01523] | 37 |
331 |
Peptidase U62, modulator of DNA gyrase |
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[seg] | 197 |
213 |
- |
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26 |
476 |
S=851 I=43 E=1.65495e-95 |
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102 |
190 |
S=245 I=57 E=3.75618e-22 |
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232 |
275 |
S=222 I=93 E=2.57537e-19 |
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32 |
92 |
S=207 I=65 E=1.61968e-17 |
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1 |
33 |
S=160 I=100 E=7.03939e-12 |
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386 |
417 |
S=146 I=81 E=3.52919e-10 |
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386 |
439 |
S=139 I=54 E=2.445e-09 |
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348 |
446 |
S=137 I=29 E=4.58045e-09 |
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430 |
454 |
S=115 I=88 E=1.99573e-06 |
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283 |
385 |
S=115 I=34 E=2.17754e-06 |
Access unfiltered results
![]() |
Set of Uniprot with relevant PubMed cross-references ncbi-blastp |
10 hits |
![]() |
Swiss-Prot ncbi-blastp |
17 hits |
![]() |
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp |
3 hits |
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HAMAP scan |
0 hits |
![]() |
IprScan |
2 hits |
Miscellaneous analyses
![]() XFF4834R_chr18660 |
![]() DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
![]() |
![]() |
![]() XFF4834R_chr18680 |
ID | tldE |
AC | XFF4834R_chr18670 |
LT | XFF4834R_chr18670 |
OR | XFF4834R_chr from 2137789 to 2139156 on strand + |
DE | probable peptidase TldE (PmbA) |
IP | Peptidase U62, modulator of DNA gyrase |
CL | 5.10 Defense/survival GO:0006952 |
EC | |
GO |
InterPro Curated |
PM | |
AN | tldE (pmbA) is annotated predicted peptidase required for the maturation and secretion of the antibiotic peptide MccB17 (Putative modulator of DNA gyrase) in GenProtEC 2 Physiological roles in GenProtEC Information transfer --> Protein related --> Export, signal peptide cleavage Cell processes --> Defense/survival Cell processes --> Protection --> Cell killing Location of gene products --> Cytoplasm Microcin B17 (MccB17) is a peptide antibiotic produced by Escherichia coli strains carrying the pMccB17 plasmid. MccB17 is synthesized as a precursor containing an amino-terminal leader peptide that is cleaved during maturation. Maturation requires the product of the chromosomal tldE (pmbA) gene. Mature microcin is exported across the cytoplasmic membrane by a dedicated ABC transporter. In sensitive cells, MccB17 targets the essential topoisomerase II DNA gyrase. Independently, tldE as well as tldD mutants were isolated as being resistant to CcdB, another natural poison of gyrase encoded by the ccd poison-antidote system of plasmid F. This led to the idea that TldD and TldE could regulate gyrase function. We present in vivo evidence supporting the hypothesis that TldD and TldE have proteolytic activity. We show that in bacterial mutants devoid of either TldD or TldE activity, the MccB17 precursor accumulates and is not exported. Similarly, in the ccd system, we found that TldD and TldE are involved in CcdA and CcdA41 antidote degradation rather than being involved in the CcdB resistance mechanism. Interestingly, sequence database comparisons revealed that these two proteins have homologues in eubacteria and archaebacteria, suggesting a broader physiological role. |
CC | COG: [R] General function prediction only; |
CC | MODEL: XFF4834R |
CC | STATUS: curated by darrasse (20120307) |
MW | 48010.1 Da |
SQ | 455 aa |
........10........20........30........40........50 |
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XFF4834R_chr01340 lcl|XFF4834R_chr_0167443_0168777_f1_XFF4834R-XFF4834R_chr01340 |
53 |
433 |
S=176 I=24 E=1.34933e-14 |
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XFF4834R_chr18650 lcl|tldD-XFF4834R_chr18650 |
223 |
433 |
S=145 I=27 E=6.75355e-11 |
predicted peptidase |
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NP_643074.1 lcl|pmbA-XAC2765 |
1 |
455 |
S=2264 I=96 E=0 |
PmbA protein |
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YP_364651.1 lcl|pmbA-XCV2920 |
1 |
455 |
S=2264 I=96 E=0 |
putative modulator of DNA gyrase; peptidase U62 protein PmbA |
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NP_637952.1 lcl|pmbA-XCC2604 |
1 |
455 |
S=2175 I=92 E=0 |
PmbA protein |
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1 |
453 |
S=1765 I=76 E=0 |
putative modulator of dna gyrase protein |
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NP_640476.1 lcl|tldD-XAC0120 |
50 |
433 |
S=184 I=25 E=4.70263e-15 |
TldD protein |
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NP_635488.1 lcl|tldD-XCC0093 |
50 |
433 |
S=182 I=24 E=8.65757e-15 |
TldD protein |
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YP_361822.1 lcl|XCV0091 |
50 |
433 |
S=181 I=25 E=1.13443e-14 |
putative modulator of DNA gyrase |
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NP_643076.1 lcl|tldD-XAC2767 |
223 |
433 |
S=145 I=27 E=2.77547e-10 |
TldD protein |
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YP_364654.1 lcl|tldD-XCV2923 |
223 |
433 |
S=144 I=27 E=2.97597e-10 |
putative modulator of DNA gyrase TldD |
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NP_637954.1 lcl|tldD-XCC2606 |
223 |
433 |
S=143 I=26 E=3.93366e-10 |
TldD protein |
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40 |
453 |
S=1012 I=47 E=9.34881e-114 |
Protein pmbA ; Cytoplasm |
||
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22 |
453 |
S=843 I=41 E=2.48407e-93 |
Peptidase U62 |
Pubmed 18459973 |
|
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75 |
166 |
S=146 I=39 E=8.12749e-09 |
Putative antibiotic maturation factor |
Pubmed 10658663 |
|
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228 |
433 |
S=131 I=27 E=5.48073e-07 |
Peptidase U62 |
Pubmed 18459973 |
|
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302 |
433 |
S=118 I=30 E=1.71596e-05 |
TldD |
Pubmed 8825087 |
|
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IPR002510 [PF01523] | 38 |
331 |
Peptidase U62, modulator of DNA gyrase |
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[seg] | 135 |
147 |
- |
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27 |
452 |
S=828 I=44 E=8.025e-93 |
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77 |
133 |
S=151 I=55 E=8.32039e-11 |
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231 |
280 |
S=136 I=53 E=6.67968e-09 |
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28 |
75 |
S=133 I=58 E=1.25137e-08 |
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285 |
410 |
S=132 I=34 E=1.77355e-08 |
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1 |
27 |
S=125 I=96 E=1.37617e-07 |
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149 |
233 |
S=120 I=36 E=5.00122e-07 |
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191 |
231 |
S=120 I=56 E=5.90227e-07 |
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148 |
185 |
S=109 I=53 E=1.05768e-05 |
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419 |
454 |
S=107 I=56 E=1.91353e-05 |
Access unfiltered results
![]() |
Set of Uniprot with relevant PubMed cross-references ncbi-blastp |
5 hits |
![]() |
Swiss-Prot ncbi-blastp |
13 hits |
![]() |
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp |
2 hits |
![]() |
HAMAP scan |
0 hits |
![]() |
IprScan |
2 hits |
Miscellaneous analyses
![]() XFF4834R_chr22200 |
![]() DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
![]() |
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![]() XFF4834R_chr_2366 |
ID | XFF4834R_chr24170719_2568318_f1_XFF4834R-XFF4834R_chr22210 |
AC | XFF4834R_chr22210 |
LT | XFF4834R_chr22210 |
OR | XFF4834R_chr from 2567719 to 2568318 on strand + |
DE | putative O-methyltransferase |
IP | O-methyltransferase, family 3 |
CL | 5.10 Defense/survival GO:0006952 |
EC | |
GO |
InterPro Molecular Function: O-methyltransferase activity (GO:0008171) Curated |
PM | |
AN | O-methyltransferases : the family includes also bacterial O-methyltransferases that may be involved in antibiotic production. |
CC | COG: [R] General function prediction only; |
CC | MODEL: XFF4834R |
CC | STATUS: curated by darrasse (20120402) |
MW | 21357 Da |
SQ | 199 aa |
........10........20........30........40........50 |
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NP_642438.1 lcl|mdmC-XAC2121 |
1 |
199 |
S=838 I=83 E=1.01165e-94 |
O-methyltransferase |
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56 |
195 |
S=238 I=38 E=1.49023e-20 |
O-methyl transferase |
Pubmed 11160120 |
|
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51 |
177 |
S=184 I=36 E=5.983e-14 |
Putative O-methyltransferase |
Pubmed 16725283 |
|
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22 |
159 |
S=171 I=38 E=1.97382e-12 |
O-methyltransferase |
Pubmed 16707707 |
|
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47 |
169 |
S=168 I=42 E=4.55839e-12 |
O-methyltransferase |
Pubmed 12060743 |
|
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26 |
159 |
S=167 I=33 E=7.29933e-12 |
O-methyltransferase mdmC EC=2.1.1.- ; Antibiotic biosynthesis Metal-binding S-adenosyl-L-methionine |
Pubmed 1629172 |
|
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23 |
159 |
S=158 I=35 E=7.68492e-11 |
O-methyl transferase |
||
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47 |
159 |
S=152 I=38 E=4.55079e-10 |
Methoxymalonate biosynthesis protein |
Pubmed 16207901 |
|
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28 |
159 |
S=149 I=35 E=1.0328e-09 |
Putative O-methyltransferase |
||
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49 |
160 |
S=142 I=36 E=7.34483e-09 |
3-dehydroquinate synthase/O-methyltransferase fusion |
Pubmed 16675503 |
|
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31 |
159 |
S=142 I=35 E=7.40915e-09 |
FkbG |
Pubmed 10863099 |
|
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26 |
159 |
S=167 I=33 E=5.05926e-12 |
O-methyltransferase mdmC EC=2.1.1.- ; Antibiotic biosynthesis Metal-binding S-adenosyl-L-methionine |
||
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[G3DSA:3.40.50.150] | 22 |
164 |
- |
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IPR002935 [PF01596] | 17 |
197 |
O-methyltransferase, family 3 |
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[seg] | 39 |
46 |
- |
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[seg] | 90 |
95 |
- |
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30 |
180 |
S=188 I=30 E=2.63895e-15 |
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109 |
159 |
S=117 I=53 E=1.06698e-06 |
Access unfiltered results
![]() |
Set of Uniprot with relevant PubMed cross-references ncbi-blastp |
18 hits |
![]() |
Swiss-Prot ncbi-blastp |
1 hits |
![]() |
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp |
0 hits |
![]() |
HAMAP scan |
0 hits |
![]() |
IprScan |
4 hits |
Miscellaneous analyses
![]() XFF4834R_chr26000 |
![]() DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
![]() |
![]() |
![]() XFF4834R_chr26020 |
ID | XFF4834R_chr_3005234_3005890_f2_XFF4834R-XFF4834R_chr26010 |
AC | XFF4834R_chr26010 |
LT | XFF4834R_chr26010 |
OR | XFF4834R_chr from 3005234 to 3005890 on strand + |
DE | putative HNH nuclease |
IP | HNH nuclease |
CL | 5.10 Defense/survival GO:0006952 |
EC | |
GO |
InterPro Molecular Function: nucleic acid binding (GO:0003676) Molecular Function: endonuclease activity (GO:0004519) Curated |
PM | |
AN | |
CC | COG: [V] Defense mechanisms; |
CC | MODEL: XFF4834R |
CC | STATUS: curated by poussier (20100629) |
MW | 24230.5 Da |
SQ | 218 aa |
........10........20........30........40........50 |
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NP_642878.2 lcl|XAC2564-XAC2564 |
1 |
218 |
S=1152 I=99 E=1.09926e-132 |
hypothetical protein |
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YP_364494.1 lcl|XCV2763 |
1 |
218 |
S=1143 I=99 E=1.10796e-131 |
HNH endonuclease family protein |
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NP_637786.2 lcl|XCC2433 |
1 |
218 |
S=1090 I=94 E=3.48471e-125 |
hypothetical protein |
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1 |
217 |
S=923 I=79 E=4.85706e-105 |
hypothetical protein |
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110 |
178 |
S=202 I=54 E=5.49142e-16 |
HNH endonuclease |
Pubmed 16368872 |
|
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111 |
185 |
S=184 I=47 E=8.40423e-14 |
HNH endonuclease |
Pubmed 16368872 |
|
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116 |
170 |
S=115 I=35 E=1.48425e-05 |
Putative uncharacterized protein |
||
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116 |
173 |
S=110 I=45 E=7.38283e-05 |
HNH endonuclease |
Pubmed 17383677 |
|
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116 |
168 |
S=109 I=46 E=8.48803e-05 |
Putative uncharacterized protein |
Pubmed 11976141 |
|
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IPR002711 [PF01844] | 122 |
169 |
HNH endonuclease |
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IPR003615 [SM00507] | 111 |
164 |
HNH nuclease |
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34 |
134 |
S=331 I=61 E=1.35919e-32 |
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168 |
216 |
S=184 I=69 E=7.73039e-15 |
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1 |
35 |
S=159 I=89 E=7.38211e-12 |
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103 |
194 |
S=126 I=36 E=9.06998e-08 |
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10 |
35 |
S=122 I=92 E=2.76872e-07 |
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136 |
166 |
S=101 I=59 E=8.81371e-05 |
Access unfiltered results
![]() |
Set of Uniprot with relevant PubMed cross-references ncbi-blastp |
6 hits |
![]() |
Swiss-Prot ncbi-blastp |
0 hits |
![]() |
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp |
0 hits |
![]() |
HAMAP scan |
0 hits |
![]() |
IprScan |
2 hits |
Miscellaneous analyses
![]() XFF4834R_chr42440 |
![]() DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
![]() |
![]() |
![]() XFF4834R_chr42460 |
ID | XFF4834R_chr_4927858_4928139_f1_XFF4834R-XFF4834R_chr42450 |
AC | XFF4834R_chr42450 |
LT | XFF4834R_chr42450 |
OR | XFF4834R_chr from 4927858 to 4928139 on strand + |
DE | putative toxin of the YafQ-DinJ toxin-antitoxin system |
IP | Plasmid stabilization system; Addiction module toxin, RelE/StbE |
CL | 5.10 Defense/survival GO:0006952 |
EC | |
GO |
InterPro Curated |
PM | |
AN | |
CC | COG: [S] Function unknown; |
CC | MODEL: XFF4834R |
CC | STATUS: curated by jacques (20100916) |
MW | 10678.9 Da |
SQ | 93 aa |
........10........20........30........40........50 |
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1 |
91 |
S=339 I=71 E=2.12995e-33 |
Plasmid stabilization system Putative uncharacterized protein |
Pubmed 15186344 |
|
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1 |
91 |
S=339 I=71 E=2.12995e-33 |
Hypothetical Xf2080 protein ; Plasmid |
Pubmed 14600226 |
|
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1 |
91 |
S=339 I=71 E=2.12995e-33 |
Putative uncharacterized protein ; Plasmid |
||
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23 |
93 |
S=324 I=90 E=1.66579e-31 |
Putative addiction module toxin ; Plasmid |
Pubmed 18227089 |
|
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23 |
93 |
S=322 I=90 E=2.32011e-31 |
Putative uncharacterized protein ; Plasmid |
Pubmed 17261525 |
|
![]() |
23 |
93 |
S=317 I=89 E=1.00379e-30 |
Putative uncharacterized protein |
Pubmed 15574953 |
|
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23 |
93 |
S=317 I=89 E=1.00379e-30 |
Putative uncharacterized protein ; Plasmid |
Pubmed 17101677 |
|
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1 |
92 |
S=182 I=43 E=2.24786e-14 |
Putative uncharacterized protein orf4H ; Plasmid |
Pubmed 11976306 |
|
![]() |
1 |
92 |
S=182 I=43 E=2.36858e-14 |
Putative uncharacterized protein orf5F ; Plasmid |
Pubmed 11976306 |
|
![]() |
1 |
92 |
S=179 I=42 E=6.18022e-14 |
R3 ; Plasmid |
||
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2 |
93 |
S=154 I=38 E=3.56366e-11 |
Uncharacterized protein yafQ |
||
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4 |
90 |
S=136 I=34 E=5.31313e-09 |
Uncharacterized protein HI0711 |
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IPR007712 [PF05016] | 4 |
92 |
Plasmid stabilisation system |
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IPR012753 [TIGR02385] | 3 |
92 |
Addiction module toxin, RelE/StbE |
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10 |
59 |
S=152 I=66 E=5.53836e-11 |
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60 |
93 |
S=128 I=74 E=4.84725e-08 |
Access unfiltered results
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Set of Uniprot with relevant PubMed cross-references ncbi-blastp |
16 hits |
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Swiss-Prot ncbi-blastp |
2 hits |
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Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp |
0 hits |
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HAMAP scan |
0 hits |
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IprScan |
2 hits |
Miscellaneous analyses