Xanthomonas fuscans subsp. fuscans

5 hits

  1. XFF4834R_chr09100rnkXFF4834R_chr09100regulator of nucleoside diphosphate kinase
  2. XFF4834R_chr12420XFF4834R_chr13060645_1406992_r3_XFF4834R-XFF4834R_chr12420XFF4834R_chr12420hypothetical conserved signalling protein
  3. XFF4834R_chr27700recXXFF4834R_chr27700probable regulatory protein Recx
  4. XFF4834R_chr28630XFF4834R_chr31180769_3296578_r3_XFF4834R-XFF4834R_chr28630XFF4834R_chr28630putative atp-binding_kinase_domain_fha protein
  5. XFF4834R_chr38170XFF4834R_chr_4411880_4412536_f2_XFF4834R-XFF4834R_chr38170XFF4834R_chr38170putative RIO kinase

rnk XFF4834R_chr09100
XFF4834R_chr09090
XFF4834R_chr09090 		Cluster
DrawMap 		XML file

FASTA file 		Extract
Sequence 		Codon
Usage 		Framed OrthoMCL XFF4834R_chr09110
XFF4834R_chr09110
ID rnk
AC XFF4834R_chr09100
LT XFF4834R_chr09100
OR XFF4834R_chr from 1048509 to 1048949 on strand -
DE regulator of nucleoside diphosphate kinase
IP Transcription elongation factor, GreA/GreB domain, prokaryotic
CL 3.1.4 Regulation level unknown
EC
GO InterPro
DNA-dependent (GO:0006355)
Molecular Function: transcription elongation regulator activity (GO:0003711)
Molecular Function: DNA binding (GO:0003677)

Curated
PM
AN annotation based on Genprotec for rnk
CC COG: [K] Transcription;
CC MODEL: XFF4834R
CC STATUS: curated by darrasse (20120316)
MW 15831.7 Da
SQ 146 aa
  
........10........20........30........40........50
         |         |         |         |         |
MTSQHHSGLPPSILVSSHDLARLEALLDSPTFNKHPAAAALSDELGRARV
LPPDQIPGDVVTMHSRIECEDQLHGERHTLTLVYPHEADVQHGRISVLAP
VGSALLGLSIGQSIDWRTPDGRDLRLRVTAVHDQPAAAGDFRRAAR

    





Show or not Domain decomposition
 

    

        
            
                X.species
            
                
        
YP_362671.1 lcl|rnk-XCV0940

        
1

	
146

	
S=735 I=98 E=1.68036e-82

	
regulator of nucleoside diphosphate kinase

     	

   





    

        
            
                X.species
            
                
        
NP_641255.2 lcl|rnk-XAC0903

        
1

	
146

	
S=721 I=96 E=8.27885e-81

	
regulator of nucleoside diphosphate kinase

     	

   





    

        
            
                X.species
            
                
        
NP_636222.2 lcl|rnk-XCC0831

        
1

	
143

	
S=669 I=90 E=1.5432e-74

	
regulator of nucleoside diphosphate kinase

     	

   





    

        Iprscan
        IPR001437
	[G3DSA:3.10.50.30]
	
51

	
131

	
	
Transcription elongation factor, GreA/GreB domain, prokaryotic

    





    

        Iprscan
        IPR001437
	[PF01272]
	
57

	
132

	
	
Transcription elongation factor, GreA/GreB domain, prokaryotic

    





    

        Iprscan
        
	[SSF54534]
	
55

	
134

	
	
-

    




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                pubmed
            
        
	    
            
Set of Uniprot with relevant PubMed cross-references ncbi-blastp

        		
 	    
            12 hits
        
    

    

        
            
                swiss-prot
            
        
	    
            
Swiss-Prot ncbi-blastp

        		
 	    
            97 hits
        
    

    
    
    

        
            
                XFF4834R
            
        
    	
            
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp

        		        
        
            0 hits
        
    

        
    

        
            
                hamap
            
        
	
            
HAMAP scan

        		        
        
            0 hits
        
    

    
    

	    
            
                Interpro Scan
            
            
	        
                
IprScan

            		        
            
                3 hits
            
    








Show or not Miscellaneous analyses




    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetLocalBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBU6G5T1/XFF4834R_chr09100.xml_fasta", "https://iant.toulouse.inra.fr/bacteria/annotation/web/img/XFF4834R.png"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    
    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetNcbiBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBU6G5T1/XFF4834R_chr09100.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetUniprotBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBU6G5T1/XFF4834R_chr09100.xml_fasta"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetKeggBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBU6G5T1/XFF4834R_chr09100.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    

    






XFF4834R_chr13060645_1406992_r3_XFF4834R-XFF4834R_chr12420 XFF4834R_chr12420




    

         
             
            XFF4834R_chr12410
            
XFF4834R_chr12410
            
        		


       
           
	   Cluster
	   
DrawMap
	   
        		
	
        
            XML file
        	


	    FASTA file
        		
	
	
             
            Extract
Sequence
            
        		
	
	
             
            Codon
Usage
            
        		
    
    
            
            Framed
            
     
  	



	
            OrthoMCL
            
    
  	
    
    
    

     


	
             
            XFF4834R_chr12430
            
XFF4834R_chr12430
            
        		

    





    

        ID
        XFF4834R_chr13060645_1406992_r3_XFF4834R-XFF4834R_chr12420
    

    

        AC
        XFF4834R_chr12420
    

    

        LT
        XFF4834R_chr12420
    

    

        OR
        XFF4834R_chr from 1406645 to 1406992 on strand -
    

   

        DE
        hypothetical conserved signalling protein
  

   

        IP
        Type IV pilus assembly PilZ
  
  
  
  

        CL
        3.1.4 Regulation level unknown 
    

  

        EC
        
    

    
    

        GO
        
            InterPro



            Curated

        		
    


  

        PM
        
    

  

        AN
        Presence of a PilZ superfamily conserved domain. This domain is found in a wide variety of bacterial signalling proteins.
    

  

        CC
        COG: [S] Function unknown; 
    

    

        CC
        MODEL: XFF4834R 
  
    
  

        CC
        STATUS: curated by boureau (20101023)
  

  
  


    

        MW
        12887.6 Da
    


    

        SQ
        115 aa
    

    

         
        
........10........20........30........40........50
         |         |         |         |         |
MIQDTRRAPRRQPTDLLPVIDTLSEAQIGRVGNVSETGMLLLASVPLHDD
ALYQLRFSLPERVGRATEIDVGVHLLWSEAAHAPGQAWAGFRFLTMSEPH
RQRLRAWIAEEHLAG

    






    

        
            
                X.species
            
                
        
NP_643709.1 lcl|XAC3402-XAC3402

        
1

	
115

	
S=588 I=99 E=6.43671e-65

	
hypothetical protein

     	

   





    

        
            
                X.species
            
                
        
YP_365250.1 lcl|XCV3519

        
1

	
115

	
S=587 I=99 E=9.52921e-65

	
hypothetical protein

     	

   





    

        
            
                X.species
            
                
        
NP_638602.1 lcl|XCC3256

        
1

	
113

	
S=559 I=95 E=2.15725e-61

	
hypothetical protein

     	

   





    

        
            
                X.species
            
                
        
 lcl|XALc_0791

        
1

	
108

	
S=349 I=62 E=6.39322e-36

	
conserved hypothetical protein.

     	

   





    

        Iprscan
        IPR009875
	[PF07238]
	
5

	
110

	
	
Type IV pilus assembly PilZ

    





    

        
            
                
            
                
        
PD289527

        
1

	
108

	
S=223 I=41 E=1.54847e-19

    	
    




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                pubmed
            
        
	    
            
Set of Uniprot with relevant PubMed cross-references ncbi-blastp

        		
 	    
            0 hits
        
    

    

        
            
                swiss-prot
            
        
	    
            
Swiss-Prot ncbi-blastp

        		
 	    
            0 hits
        
    

    
    
    

        
            
                XFF4834R
            
        
    	
            
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp

        		        
        
            0 hits
        
    

        
    

        
            
                hamap
            
        
	
            
HAMAP scan

        		        
        
            0 hits
        
    

    
    

	    
            
                Interpro Scan
            
            
	        
                
IprScan

            		        
            
                1 hits
            
    








Show or not Miscellaneous analyses




    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetLocalBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBU6G5T1/XFF4834R_chr12420.xml_fasta", "https://iant.toulouse.inra.fr/bacteria/annotation/web/img/XFF4834R.png"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    
    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetNcbiBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBU6G5T1/XFF4834R_chr12420.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetUniprotBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBU6G5T1/XFF4834R_chr12420.xml_fasta"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetKeggBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBU6G5T1/XFF4834R_chr12420.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    

    






recX XFF4834R_chr27700




    

         
             
            XFF4834R_chr27690
            
XFF4834R_chr27690
            
        		


       
           
	   Cluster
	   
DrawMap
	   
        		
	
        
            XML file
        	


	    FASTA file
        		
	
	
             
            Extract
Sequence
            
        		
	
	
             
            Codon
Usage
            
        		
    
    
            
            Framed
            
     
  	



	
            OrthoMCL
            
    
  	
    
    
    

     


	
             
            XFF4834R_chr27710
            
XFF4834R_chr27710
            
        		

    





    

        ID
        recX
    

    

        AC
        XFF4834R_chr27700
    

    

        LT
        XFF4834R_chr27700
    

    

        OR
        XFF4834R_chr from 3199028 to 3199516 on strand -
    

   

        DE
        probable regulatory protein Recx
  

   

        IP
        Regulatory protein RecX
  
  
  
  

        CL
        3.1.4 Regulation level unknown 
    

  

        EC
        
    

    
    

        GO
        
            InterPro
Biological Process: regulation of DNA repair (GO:0006282)


            Curated

        		
    


  

        PM
        
    

  

        AN
        regulatory protein for RecA 
    

  

        CC
        COG: [R] General function prediction only; 
    

    

        CC
        MODEL: XFF4834R 
  
    
  

        CC
        STATUS: curated by pieretti (20100930)
  

  
  


    

        MW
        18156 Da
    


    

        SQ
        162 aa
    

    

         
        
........10........20........30........40........50
         |         |         |         |         |
MDEQEPAPKRGRRFKEQTPVQRALGLLVRREHSRKELNRKLLARGIEPDA
AQAAVDRLTDEGWQDDTRFAAAVVRNRAGSGYGPLHIRAELGTHGLDSEA
ISAALATFEGDWTENARDLIRRRFGEQGPTDLPQRRKAADLLARRGFDGN
SVRAATRFDLED

    





Show or not Domain decomposition
 

    

        Hamap
        RECX_MF_01114
	raw_score=1646 norm_score=14.125
	
Regulatory protein recX [recX].

    





    

        
            
                X.species
            
                
        
YP_363505.1 lcl|recX-XCV1774

        
1

	
162

	
S=818 I=99 E=1.62906e-92

	
recombination regulator RecX

     	

   





    

        
            
                X.species
            
                
        
NP_642072.1 lcl|recX-XAC1741

        
1

	
162

	
S=813 I=98 E=7.10978e-92

	
recombination regulator RecX

     	

   





    

        
            
                X.species
            
                
        
NP_637093.1 lcl|recX-XCC1723

        
1

	
162

	
S=735 I=88 E=2.15409e-82

	
recombination regulator RecX

     	

   





    

        
            
                X.species
            
                
        
 lcl|recX-XALc_1172

        
4

	
162

	
S=565 I=71 E=7.83406e-62

	
probable regulatory protein recx

     	

   





    

        
                pubmed
        
        

        
1

	
162

	
S=813 I=98 E=2.36512e-90

	
Regulatory protein recX ; Cytoplasm

	
Pubmed 11178726

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
1

	
162

	
S=786 I=94 E=5.12583e-87

	
Regulatory protein recX ; Cytoplasm

	
Pubmed 11728720,12007798

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
1

	
162

	
S=735 I=88 E=7.16575e-81

	
Regulatory protein recX ; Cytoplasm

	
Pubmed 12007798

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
23

	
152

	
S=236 I=42 E=1.73244e-20

	
Regulatory protein recX ; Cytoplasm

	
Pubmed 8165147

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
23

	
162

	
S=236 I=41 E=2.21146e-20

	
Regulatory protein recX ; Cytoplasm

	
Pubmed 11053404

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
18

	
152

	
S=229 I=41 E=1.23203e-19

	
Regulatory protein recX ; Cytoplasm

	
Pubmed 8468303

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
18

	
131

	
S=227 I=45 E=2.74776e-19

	
Regulatory protein recX ; Cytoplasm

	
Pubmed 8294013,8165147

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
23

	
152

	
S=195 I=35 E=2.01837e-15

	
Regulatory protein recX ; Cytoplasm

	
Pubmed 11251842,2121588

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
20

	
147

	
S=184 I=36 E=4.0158e-14

	
Regulatory protein recX ; Cytoplasm DNA damage repair SOS response

	
Pubmed 7512687

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
22

	
155

	
S=162 I=37 E=1.97687e-11

	
Regulatory protein recX ; Cytoplasm

	
Pubmed 12718403

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
1

	
162

	
S=818 I=99 E=3.7779e-91

	
Regulatory protein recX ; Cytoplasm

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
1

	
162

	
S=813 I=98 E=1.64881e-90

	
Regulatory protein recX ; Cytoplasm

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
1

	
162

	
S=813 I=98 E=1.64881e-90

	
Regulatory protein recX ; Cytoplasm

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
1

	
162

	
S=786 I=94 E=3.5734e-87

	
Regulatory protein recX ; Cytoplasm

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
1

	
162

	
S=786 I=94 E=3.5734e-87

	
Regulatory protein recX ; Cytoplasm

	

    

    

         
        
prodomImg

    





    

        Iprscan
        
	[MF_01114]
	
11

	
162

	
	
-

    





    

        Iprscan
        IPR003783
	[PF02631]
	
41

	
161

	
	
Regulatory protein RecX

    





    

        
            
                
            
                
        
PDA1R7B5

        
1

	
32

	
S=163 I=100 E=2.58371e-12

    	
    





    

        
            
                
            
                
        
PD013331

        
27

	
74

	
S=118 I=52 E=6.83154e-07

    	
    





    

        
            
                
            
                
        
PD009152

        
74

	
153

	
S=117 I=42 E=1.01137e-06

    	
    





    

        
            
                
            
                
        
PD760457

        
2

	
80

	
S=110 I=42 E=7.19241e-06

    	
    




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                pubmed
            
        
	    
            
Set of Uniprot with relevant PubMed cross-references ncbi-blastp

        		
 	    
            16 hits
        
    

    

        
            
                swiss-prot
            
        
	    
            
Swiss-Prot ncbi-blastp

        		
 	    
            141 hits
        
    

    
    
    

        
            
                XFF4834R
            
        
    	
            
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp

        		        
        
            0 hits
        
    

        
    

        
            
                hamap
            
        
	
            
HAMAP scan

        		        
        
            1 hits
        
    

    
    

	    
            
                Interpro Scan
            
            
	        
                
IprScan

            		        
            
                2 hits
            
    








Show or not Miscellaneous analyses




    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetLocalBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBU6G5T1/XFF4834R_chr27700.xml_fasta", "https://iant.toulouse.inra.fr/bacteria/annotation/web/img/XFF4834R.png"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    
    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetNcbiBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBU6G5T1/XFF4834R_chr27700.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetUniprotBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBU6G5T1/XFF4834R_chr27700.xml_fasta"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetKeggBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBU6G5T1/XFF4834R_chr27700.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    

    






XFF4834R_chr31180769_3296578_r3_XFF4834R-XFF4834R_chr28630 XFF4834R_chr28630




    

         
             
            XFF4834R_chr_4697
            
XFF4834R_chr_4697
            
        		


       
           
	   Cluster
	   
DrawMap
	   
        		
	
        
            XML file
        	


	    FASTA file
        		
	
	
             
            Extract
Sequence
            
        		
	
	
             
            Codon
Usage
            
        		
    
    
            
            Framed
            
     
  	



	
            OrthoMCL
            
    
  	
    
    
    

     


	
             
            XFF4834R_chr28640
            
XFF4834R_chr28640
            
        		

    





    

        ID
        XFF4834R_chr31180769_3296578_r3_XFF4834R-XFF4834R_chr28630
    

    

        AC
        XFF4834R_chr28630
    

    

        LT
        XFF4834R_chr28630
    

    

        OR
        XFF4834R_chr from 3295769 to 3296578 on strand -
    

   

        DE
        putative atp-binding_kinase_domain_fha protein
  

   

        IP
        Forkhead-associated; Beta tubulin, autoregulation binding site
  
  
  
  

        CL
        3.1.4 Regulation level unknown 
    

  

        EC
        
    

    
    

        GO
        
            InterPro



            Curated

        		
    


  

        PM
        
    

  

        AN
        Structural: Xcv1686 is more or less 55 residues longer than XFF4834R 3019. But codon usage is really not good in this part. Start was not modified. Check Xcv1686 for mistake in predicting the start?
    

  

        CC
        COG: [T] Signal transduction mechanisms; 
    

    

        CC
        MODEL: XFF4834R 
  
    
  

        CC
        STATUS: curated by boureau (20101018)
  

  
  


    

        MW
        29509.4 Da
    


    

        SQ
        269 aa
    

    

         
        
........10........20........30........40........50
         |         |         |         |         |
MRDLQVHFTHRQQPDHSLKPGVHRIVRHASGSVRVVGDAQGALLLAQFCL
DQRGLWLQVANGIRGIHVNGRPVRRMALLRAGDAIYADGVEMLLRSAPSS
APANDIHDDTASLGEVCLLLRGIGGRHHGRSFTLDRARLVGSDAAADIVI
DDPAFAAQHARLERHGDRVLIRDLGSEEGSWINGVQVRDGWLQAGDQVVF
DARHRFVVEVPRTHHSTTWDLPDTEPLPPPRAVAEPTRAPVKVARWPWLL
LSAVLLAAALSALLWFGAR

    






    

        
            
                X.species
            
                
        
NP_641977.1 lcl|XAC1645-XAC1645

        
1

	
269

	
S=1100 I=83 E=2.26969e-126

	
hypothetical protein

     	

   





    

        
            
                X.species
            
                
        
YP_363417.1 lcl|XCV1686

        
1

	
269

	
S=1063 I=82 E=8.29287e-122

	
hypothetical protein

     	

   





    

        
            
                X.species
            
                
        
NP_636956.2 lcl|XCC1585

        
1

	
269

	
S=990 I=74 E=6.22691e-113

	
hypothetical protein

     	

   





    

        
            
                X.species
            
                
        
 lcl|XALc_1707

        
3

	
269

	
S=573 I=51 E=2.09602e-62

	
putative atp-binding_kinase_domain_fha protein

     	

   





    

        Iprscan
        IPR000253
	[G3DSA:2.60.200.20]
	
106

	
217

	
	
Forkhead-associated

    





    

        Iprscan
        IPR000253
	[PF00498]
	
138

	
201

	
	
Forkhead-associated

    





    

        Iprscan
        IPR000253
	[SM00240]
	
137

	
187

	
	
Forkhead-associated

    





    

        Iprscan
        IPR013838
	[PS00228]
	
1

	
4

	
	
Beta tubulin, autoregulation binding site

    





    

        Iprscan
        IPR000253
	[PS50006]
	
138

	
187

	
	
Forkhead-associated

    





    

        Iprscan
        
	[seg]
	
118

	
130

	
	
-

    





    

        Iprscan
        
	[seg]
	
143

	
157

	
	
-

    





    

        Iprscan
        
	[seg]
	
249

	
264

	
	
-

    





    

        Iprscan
        
	[tmhmm]
	
246

	
268

	
	
-

    





    

        
            
                
            
                
        
PD457459

        
4

	
142

	
S=554 I=82 E=1.1446e-59

    	
    





    

        
            
                
            
                
        
PD694859

        
200

	
248

	
S=244 I=96 E=4.75973e-22

    	
    




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                pubmed
            
        
	    
            
Set of Uniprot with relevant PubMed cross-references ncbi-blastp

        		
 	    
            0 hits
        
    

    

        
            
                swiss-prot
            
        
	    
            
Swiss-Prot ncbi-blastp

        		
 	    
            0 hits
        
    

    
    
    

        
            
                XFF4834R
            
        
    	
            
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp

        		        
        
            0 hits
        
    

        
    

        
            
                hamap
            
        
	
            
HAMAP scan

        		        
        
            0 hits
        
    

    
    

	    
            
                Interpro Scan
            
            
	        
                
IprScan

            		        
            
                9 hits
            
    








Show or not Miscellaneous analyses




    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetLocalBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBU6G5T1/XFF4834R_chr28630.xml_fasta", "https://iant.toulouse.inra.fr/bacteria/annotation/web/img/XFF4834R.png"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    
    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetNcbiBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBU6G5T1/XFF4834R_chr28630.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetUniprotBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBU6G5T1/XFF4834R_chr28630.xml_fasta"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetKeggBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBU6G5T1/XFF4834R_chr28630.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    

    






XFF4834R_chr_4411880_4412536_f2_XFF4834R-XFF4834R_chr38170 XFF4834R_chr38170




    

         
             
            XFF4834R_chr_4060
            
XFF4834R_chr_4060
            
        		


       
           
	   Cluster
	   
DrawMap
	   
        		
	
        
            XML file
        	


	    FASTA file
        		
	
	
             
            Extract
Sequence
            
        		
	
	
             
            Codon
Usage
            
        		
    
    
            
            Framed
            
     
  	



	
            OrthoMCL
            
    
  	
    
    
    

     


	
             
            XFF4834R_chr38180
            
XFF4834R_chr38180
            
        		

    





    

        ID
        XFF4834R_chr_4411880_4412536_f2_XFF4834R-XFF4834R_chr38170
    

    

        AC
        XFF4834R_chr38170
    

    

        LT
        XFF4834R_chr38170
    

    

        OR
        XFF4834R_chr from 4411880 to 4412536 on strand +
    

   

        DE
        putative RIO kinase
  

   

        IP
        RIO-like kinase
  
  
  
  

        CL
        3.1.4 Regulation level unknown 
    

  

        EC
        
    

    
    

        GO
        
            InterPro
Molecular Function: catalytic activity (GO:0003824)
Molecular Function: ATP binding (GO:0005524)


            Curated

        		
    


  

        PM
        
    

  

        AN
        This entry represents RIO kinase, they exhibit little sequence similarity with eukaryotic protein kinases, and are classified as atypical protein kinases [6]. The conformation of ATP when bound to the RIO kinases is unique when compared with ePKs, such as serine/threonine kinases or the insulin receptor tyrosine kinase, suggesting that the detailed mechanism by which the catalytic aspartate of RIO kinases participates in phosphoryl transfer may not be identical to that employed in known serine/threonine ePKs. Representatives of the RIO family are present in organisms varying from Archaea to humans, although the RIO3 proteins have only been identified in multicellular eukaryotes, to date. Yeast Rio1 and Rio2 proteins are required for proper cell cycle progression and chromosome maintenance, and are necessary for survival of the cells. These proteins are involved in the processing of 20 S pre-rRNA via late 18 S rRNA processing. Blast on NCBI identifies a domain belonging to Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family. The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves as precursors to the synthesis of important biological compounds, such as the major phospholipids, phosphatidylcholine and phosphatidylethanolamine and the amino acids, threonine, methionine, and isoleucine. Thus this protein may be involoved in various phenomena: signalling or antibiotic resistance.
    

  

        CC
        COG: [T] Signal transduction mechanisms; 
    

    

        CC
        MODEL: XFF4834R 
  
    
  

        CC
        STATUS: curated by boureau (20101021)
  

  
  


    

        MW
        24686.5 Da
    


    

        SQ
        218 aa
    

    

         
        
........10........20........30........40........50
         |         |         |         |         |
MHYQPLDVSSLHLITPVLLKQGTRLLEPDVYRTHLNGQPAVVKDYGRYRR
TLLAPIARLMVRHEASMLRQLQGWRHAPALLGTLGGLALGMEFIPGDTLS
ASTVVGQEVFQQLQQALRRLHAFGITHNDLHGTNVVVSTGVPVLIDFTSA
WRFPRWLRRGTLARQLRRSDVANFQKMRHRLAGIAPSADESARSAEPRWI
HAIRSGWKRLYPRLKCKA

    






    

        
            
                X.species
            
                
        
YP_365773.1 lcl|XCV4042

        
1

	
218

	
S=965 I=85 E=4.58861e-110

	
putative kinase

     	

   





    

        
            
                X.species
            
                
        
NP_644228.1 lcl|XAC3927-XAC3927

        
35

	
218

	
S=806 I=85 E=7.62045e-91

	
hypothetical protein

     	

   





    

        
            
                X.species
            
                
        
NP_639211.1 lcl|XCC3871

        
41

	
218

	
S=654 I=72 E=2.37286e-72

	
hypothetical protein

     	

   





    

        Iprscan
        IPR018934
	[PF01163]
	
29

	
191

	
	
RIO-like kinase

    





    

        Iprscan
        
	[seg]
	
79

	
90

	
	
-

    





    

        Iprscan
        
	[seg]
	
111

	
120

	
	
-

    





    

        
            
                
            
                
        
PD893472

        
148

	
218

	
S=267 I=73 E=6.72137e-25

    	
    





    

        
            
                
            
                
        
PD603509

        
41

	
78

	
S=177 I=92 E=5.99833e-14

    	
    





    

        
            
                
            
                
        
PDA314X2

        
1

	
39

	
S=170 I=82 E=4.19199e-13

    	
    




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Show or not Access unfiltered results






    

       
            
                pubmed
            
        
	    
            
Set of Uniprot with relevant PubMed cross-references ncbi-blastp

        		
 	    
            0 hits
        
    

    

        
            
                swiss-prot
            
        
	    
            
Swiss-Prot ncbi-blastp

        		
 	    
            0 hits
        
    

    
    
    

        
            
                XFF4834R
            
        
    	
            
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp

        		        
        
            0 hits
        
    

        
    

        
            
                hamap
            
        
	
            
HAMAP scan

        		        
        
            0 hits
        
    

    
    

	    
            
                Interpro Scan
            
            
	        
                
IprScan

            		        
            
                3 hits
            
    








Show or not Miscellaneous analyses




    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetLocalBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBU6G5T1/XFF4834R_chr38170.xml_fasta", "https://iant.toulouse.inra.fr/bacteria/annotation/web/img/XFF4834R.png"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    
    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetNcbiBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBU6G5T1/XFF4834R_chr38170.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetUniprotBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBU6G5T1/XFF4834R_chr38170.xml_fasta"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetKeggBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBU6G5T1/XFF4834R_chr38170.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    •