9 hits
XFF4834R_chr05200 | fis | XFF4834R_chr05200 | global DNA-binding transcriptional dual regulator (factor-for-inversion stimulation protein) |
XFF4834R_chr09660 | nusG | XFF4834R_chr09660 | transcription antitermination protein NusG |
XFF4834R_chr14950 | argP | XFF4834R_chr14950 | DNA-binding transcriptional activator, replication initiation inhibitor |
XFF4834R_chr24060 | cspA1 | XFF4834R_chr24060 | major cold shock protein CspA |
XFF4834R_chr24380 | sspA | XFF4834R_chr24380 | probable stringent starvation protein A |
XFF4834R_chr30330 | cspA2 | XFF4834R_chr30330 | major cold shock protein A |
XFF4834R_chr30560 | XFF4834R_chr33200798_3512649_f1_XFF4834R-XFF4834R_chr30560 | XFF4834R_chr30560 | putative AraC family transcriptional regulator |
XFF4834R_chr38830 | XFF4834R_chr41960527_4474255_r3_XFF4834R-XFF4834R_chr38830 | XFF4834R_chr38830 | probable Type III pantothenate kinase CoaX |
XFF4834R_chr39300 | ftrA | XFF4834R_chr39300 | Transcriptional activator FtrA |
![]() XFF4834R_chr05190 |
![]() DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
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![]() XFF4834R_chr05210 |
ID | fis |
AC | XFF4834R_chr05200 |
LT | XFF4834R_chr05200 |
OR | XFF4834R_chr from 586636 to 586908 on strand - |
DE | global DNA-binding transcriptional dual regulator (factor-for-inversion stimulation protein) |
IP | DNA-binding protein Fis |
CL | 3.1.2.2 Activator GO:0016563 |
EC | |
GO |
InterPro DNA-dependent (GO:0006355) Molecular Function: transcription factor activity (GO:0003700) Molecular Function: DNA binding (GO:0003677) Curated |
PM | |
AN | |
CC | COG: [KL] Transcription;Replication, recombination and repair; |
CC | MODEL: XFF4834R |
CC | STATUS: curated by darrasse (20120319) |
MW | 10132.4 Da |
SQ | 90 aa |
........10........20........30........40........50 |
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XFF4834R_chr01970 lcl|XFF4834R_chr02090240_0235586_f3_XFF4834R-XFF4834R_chr01970 |
49 |
89 |
S=89 I=44 E=3.90548e-05 |
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YP_362287.1 lcl|fis-XCV0556 |
1 |
90 |
S=472 I=100 E=4.03754e-51 |
DNA-binding protein Fis |
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NP_640875.1 lcl|fis-XAC0522 |
1 |
90 |
S=472 I=100 E=4.03754e-51 |
DNA-binding protein Fis |
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NP_635900.1 lcl|fis-XCC0508 |
1 |
90 |
S=469 I=99 E=1.0535e-50 |
DNA-binding protein Fis |
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1 |
89 |
S=424 I=91 E=2.78553e-45 |
probable dna-binding protein fis (factor-for-inversion stimulation protein) |
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YP_361963.1 lcl|XCV0232 |
44 |
89 |
S=96 I=48 E=1.45064e-05 |
sigma 54-dependent response regulator |
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14 |
89 |
S=218 I=50 E=1.09833e-18 |
DNA-binding protein fis ; Activator Transcription regulation |
Pubmed 9811652 |
|
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6 |
89 |
S=218 I=46 E=1.20888e-18 |
Fis ; Activator DNA-binding Transcription regulation |
Pubmed 15294770 |
|
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6 |
89 |
S=218 I=46 E=1.20888e-18 |
Fis ; Activator DNA-binding Transcription regulation |
Pubmed 15294770 |
|
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6 |
89 |
S=218 I=46 E=1.20888e-18 |
Fis ; Activator DNA-binding Transcription regulation |
Pubmed 15294770 |
|
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6 |
89 |
S=217 I=46 E=1.25178e-18 |
Fis ; Activator DNA-binding Transcription regulation |
Pubmed 15294770 |
|
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6 |
89 |
S=217 I=46 E=1.25178e-18 |
Fis ; Activator DNA-binding Transcription regulation |
Pubmed 15294770 |
|
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6 |
89 |
S=217 I=46 E=1.25178e-18 |
DNA-binding protein fis ; Activator Transcription regulation |
Pubmed 9811652 |
|
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6 |
89 |
S=217 I=46 E=1.25178e-18 |
DNA-binding protein fis ; Activator Transcription regulation |
Pubmed 7536730 |
|
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6 |
89 |
S=217 I=46 E=1.25178e-18 |
DNA-binding protein fis ; Activator Transcription regulation |
||
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6 |
89 |
S=216 I=46 E=1.77414e-18 |
DNA-binding protein fis ; Activator Transcription regulation |
Pubmed 9811652 |
|
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1 |
90 |
S=472 I=100 E=1.05004e-49 |
Putative fis-like DNA-binding protein |
||
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1 |
90 |
S=469 I=99 E=2.73983e-49 |
Putative fis-like DNA-binding protein |
||
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1 |
90 |
S=412 I=84 E=2.20957e-42 |
Putative fis-like DNA-binding protein |
||
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1 |
90 |
S=403 I=82 E=2.76946e-41 |
Putative fis-like DNA-binding protein |
||
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18 |
89 |
S=226 I=56 E=7.6802e-20 |
DNA-binding protein fis ; Activator Transcription regulation |
||
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[G3DSA:1.10.1680.10] | 5 |
90 |
- |
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IPR005412 [PIRSF002097] | 1 |
90 |
DNA-binding protein Fis |
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IPR002197 [PF02954] | 47 |
87 |
Helix-turn-helix, Fis-type |
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1 |
46 |
S=223 I=93 E=1.54032e-19 |
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23 |
83 |
S=135 I=43 E=7.4667e-09 |
Access unfiltered results
Miscellaneous analyses
![]() XFF4834R_chr09650 |
![]() DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
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![]() XFF4834R_chr09670 |
ID | nusG |
AC | XFF4834R_chr09660 |
LT | XFF4834R_chr09660 |
OR | XFF4834R_chr from 1102916 to 1103473 on strand + |
DE | transcription antitermination protein NusG |
IP | Transcription antitermination protein, NusG; Ribosomal protein L26e, archaeal |
CL | 3.1.2.2 Activator GO:0016563 |
EC | |
GO |
InterPro Biological Process: positive regulation of RNA elongation from RNA polymerase II promoter (GO:0032968) DNA-dependent (GO:0006355) Molecular Function: transcription elongation regulator activity (GO:0003711) Curated |
PM | |
AN | |
CC | COG: [K] Transcription; |
CC | MODEL: XFF4834R |
CC | STATUS: curated by darrasse (20120314) |
MW | 21190 Da |
SQ | 185 aa |
........10........20........30........40........50 |
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NP_641307.1 lcl|nusG-XAC0960 |
1 |
185 |
S=955 I=99 E=5.53506e-109 |
transcription antitermination protein NusG |
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YP_362717.1 lcl|nusG-XCV0986 |
1 |
185 |
S=953 I=99 E=9.84083e-109 |
transcription antitermination protein NusG |
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NP_636269.1 lcl|nusG-XCC0883 |
1 |
185 |
S=936 I=97 E=1.0352e-106 |
transcription antitermination protein NusG |
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1 |
185 |
S=911 I=94 E=1.17689e-103 |
probable transcription antitermination protein nusg |
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IPR001062 [PR00338] | 56 |
68 |
Transcription antitermination protein, NusG |
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IPR001062 [PR00338] | 143 |
158 |
Transcription antitermination protein, NusG |
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IPR001062 [PR00338] | 161 |
177 |
Transcription antitermination protein, NusG |
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IPR006645 [G3DSA:3.30.70.940] | 1 |
123 |
Transcription antitermination protein, NusG, N-terminal |
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IPR014722 [G3DSA:2.30.30.30] | 123 |
185 |
Translation protein SH3-like, subgroup |
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IPR006645 [PF02357] | 2 |
110 |
Transcription antitermination protein, NusG, N-terminal |
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IPR005824 [PF00467] | 134 |
164 |
KOW |
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IPR006645 [SM00738] | 1 |
119 |
Transcription antitermination protein, NusG, N-terminal |
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IPR005824 [SM00739] | 131 |
158 |
KOW |
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IPR001062 [TIGR00922] | 4 |
185 |
Transcription antitermination protein, NusG |
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IPR015869 [PS01014] | 168 |
177 |
Transcription antitermination protein, NusG, bacteria, conserved site |
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IPR006645 [SSF82679] | 1 |
122 |
Transcription antitermination protein, NusG, N-terminal |
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IPR008991 [SSF50104] | 128 |
185 |
Translation protein SH3-like |
Access unfiltered results
Miscellaneous analyses
![]() XFF4834R_chr14940 |
![]() DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
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![]() XFF4834R_chr14960 |
ID | argP |
AC | XFF4834R_chr14950 |
LT | XFF4834R_chr14950 |
OR | XFF4834R_chr from 1714621 to 1715523 on strand - |
DE | DNA-binding transcriptional activator, replication initiation inhibitor |
IP | Bacterial regulatory protein, LysR; LysR, substrate-binding |
CL | 3.1.2.2 Activator GO:0016563 |
EC | |
GO |
InterPro DNA-dependent (GO:0006355) Molecular Function: transcription factor activity (GO:0003700) Curated |
PM | |
AN | |
CC | COG: [K] Transcription; |
CC | MODEL: XFF4834R |
CC | STATUS: validated by darrasse (20120314) |
MW | 32673.4 Da |
SQ | 300 aa |
........10........20........30........40........50 |
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XFF4834R_chr06800 lcl|XFF4834R_chr07150040_0780948_f1_XFF4834R-XFF4834R_chr06800 |
1 |
120 |
S=103 I=34 E=4.60048e-06 |
predicted DNA-binding transcriptional regulator |
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XFF4834R_chr41800 lcl|XFF4834R_chr_4862828_4863730_r3_XFF4834R-XFF4834R_chr41800 |
7 |
71 |
S=101 I=47 E=9.08135e-06 |
predicted DNA-binding transcriptional regulator |
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XFF4834R_chr29860 lcl|XFF4834R_chr32430654_3431766_f1_XFF4834R-XFF4834R_chr29860 |
7 |
120 |
S=101 I=32 E=9.82266e-06 |
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XFF4834R_chr37280 lcl|XFF4834R_chr40410318_4311265_r3_XFF4834R-XFF4834R_chr37280 |
8 |
83 |
S=99 I=39 E=1.58667e-05 |
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XFF4834R_chr05050 lcl|XFF4834R_chr05180587_0570588_r1_XFF4834R-XFF4834R_chr05050 |
7 |
66 |
S=96 I=44 E=3.2151e-05 |
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XFF4834R_chr11880 lcl|XFF4834R_chr12460277_1335161_r2_XFF4834R-XFF4834R_chr11880 |
1 |
76 |
S=95 I=41 E=4.4391e-05 |
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XFF4834R_chr30170 lcl|XFF4834R_chr32750197_3468231_f1_XFF4834R-XFF4834R_chr30170 |
11 |
53 |
S=94 I=47 E=6.07587e-05 |
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XFF4834R_chr27640 lcl|XFF4834R_chr30210469_3191413_r3_XFF4834R-XFF4834R_chr27640 |
13 |
67 |
S=93 I=46 E=8.76278e-05 |
predicted DNA-binding transcriptional regulator |
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YP_364995.1 lcl|iciA-XCV3264 |
1 |
300 |
S=1369 I=88 E=8.33844e-159 |
chromosome replication initiation inhibitor protein |
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NP_643443.1 lcl|XAC3134-XAC3134 |
1 |
300 |
S=1360 I=89 E=9.25039e-158 |
chromosome replication initiation inhibitor protein |
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NP_638303.1 lcl|XCC2955 |
1 |
297 |
S=1109 I=72 E=2.23396e-127 |
chromosome replication initiation inhibitor protein |
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NP_640658.1 lcl|XAC0302-XAC0302 |
7 |
71 |
S=116 I=44 E=5.04822e-07 |
LysR family transcriptional regulator |
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NP_635680.1 lcl|XCC0285 |
7 |
71 |
S=115 I=44 E=6.55743e-07 |
LysR family transcriptional regulator |
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YP_364731.1 lcl|XCV3000 |
7 |
83 |
S=112 I=41 E=1.46249e-06 |
LysR family transcriptional regulator |
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NP_636853.1 lcl|oxyR-XCC1481 |
7 |
120 |
S=109 I=32 E=3.12261e-06 |
hydrogen peroxide-inducible genes activator protein |
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YP_362463.1 lcl|XCV0732 |
1 |
120 |
S=108 I=34 E=4.87113e-06 |
LysR family transcriptional regulator |
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NP_641024.1 lcl|XAC0671-XAC0671 |
1 |
120 |
S=108 I=34 E=5.08817e-06 |
transcriptional regulator |
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YP_363303.1 lcl|XCV1572 |
7 |
120 |
S=105 I=33 E=1.22744e-05 |
LysR family transcriptional regulator |
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7 |
272 |
S=494 I=41 E=3.27761e-51 |
Transcriptional regulator ; DNA-binding regulation |
Pubmed 16707707 |
|
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4 |
297 |
S=441 I=37 E=7.21029e-45 |
Lysine export transcriptional regulatory protein lysG ; DNA-binding regulation |
Pubmed 8971704 |
|
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8 |
297 |
S=418 I=35 E=4.49152e-42 |
Chromosome initiation inhibitor ; DNA-binding Transcription regulation |
Pubmed 9286976 |
|
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8 |
297 |
S=382 I=33 E=1.2095e-37 |
Chromosome initiation inhibitor ; DNA-binding Transcription regulation |
Pubmed 2034653 |
|
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8 |
297 |
S=370 I=34 E=3.41064e-36 |
Chromosome initiation inhibitor ; DNA-binding Transcription regulation |
Pubmed 12542086 |
|
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14 |
288 |
S=284 I=28 E=8.44874e-26 |
Putative uncharacterized protein ; DNA-binding Transcription regulation |
Pubmed 11401961 |
|
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7 |
151 |
S=133 I=35 E=1.80827e-07 |
Nitrogen assimilation transcriptional activator NtcB protein ; DNA-binding regulation |
||
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7 |
94 |
S=127 I=44 E=8.24356e-07 |
Probable HTH-type transcriptional regulator lrrA ; DNA-binding regulation |
Pubmed 8661945 |
|
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7 |
70 |
S=124 I=48 E=1.80676e-06 |
Probable nitrogen assimilation transcriptional activator ; DNA-binding regulation |
Pubmed 7814317 |
|
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8 |
66 |
S=117 I=47 E=1.4266e-05 |
Putative transcriptional regulator ; DNA-binding regulation |
Pubmed 12055289 |
|
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IPR011991 [G3DSA:1.10.10.10] | 3 |
88 |
Winged helix repressor DNA-binding |
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IPR000847 [PF00126] | 7 |
63 |
HTH transcriptional regulator, LysR |
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IPR005119 [PF03466] | 89 |
297 |
LysR, substrate-binding |
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IPR017685 [TIGR03298] | 3 |
296 |
Transcriptional regulator, ArgP |
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IPR000847 [PS50931] | 1 |
59 |
HTH transcriptional regulator, LysR |
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[seg] | 169 |
178 |
- |
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[seg] | 209 |
220 |
- |
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93 |
208 |
S=276 I=50 E=4.98618e-26 |
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55 |
95 |
S=205 I=93 E=2.16165e-17 |
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221 |
292 |
S=181 I=43 E=1.71889e-14 |
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8 |
46 |
S=110 I=56 E=7.25951e-06 |
Access unfiltered results
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Set of Uniprot with relevant PubMed cross-references ncbi-blastp |
19 hits |
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Swiss-Prot ncbi-blastp |
90 hits |
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Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp |
9 hits |
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HAMAP scan |
0 hits |
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IprScan |
9 hits |
Miscellaneous analyses
![]() XFF4834R_chr24050 |
![]() DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
![]() |
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![]() XFF4834R_chr24070 |
ID | cspA1 |
AC | XFF4834R_chr24060 |
LT | XFF4834R_chr24060 |
OR | XFF4834R_chr from 2773841 to 2774056 on strand - |
DE | major cold shock protein CspA |
IP | Cold shock, CspA; Nucleic acid-binding, OB-fold-like |
CL | 3.1.2.2 Activator GO:0016563 |
EC | |
GO |
InterPro DNA-dependent (GO:0006355) Molecular Function: nucleic acid binding (GO:0003676) Molecular Function: DNA binding (GO:0003677) Curated |
PM | |
AN | according to GenProtEC :- regulation -transcriptional -activator -- -cell process -adaptation to stress -temperature extremes- |
CC | COG: [K] Transcription; |
CC | MODEL: XFF4834R |
CC | STATUS: curated by darrasse (20120403) |
MW | 7649.6 Da |
SQ | 71 aa |
........10........20........30........40........50 |
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XFF4834R_chr30330 lcl|XFF4834R_chr32940711_3484926_r1_XFF4834R-XFF4834R_chr30330 |
1 |
70 |
S=270 I=73 E=3.12646e-27 |
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XFF4834R_chr31640 lcl|cspD-XFF4834R_chr31640 |
8 |
68 |
S=200 I=61 E=7.8942e-19 |
cold shock protein homolog |
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XFF4834R_chr23370 lcl|XFF4834R_chr25540883_2704497_f1_XFF4834R-XFF4834R_chr23370 |
6 |
69 |
S=85 I=37 E=8.36609e-05 |
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YP_364323.1 lcl|cspA-XCV2592 |
4 |
70 |
S=328 I=96 E=9.77753e-34 |
major cold shock protein |
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NP_642711.1 lcl|cspA-XAC2395 |
4 |
70 |
S=328 I=96 E=9.77753e-34 |
major cold shock protein |
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NP_637642.1 lcl|cspA-XCC2287 |
1 |
70 |
S=327 I=94 E=1.46019e-33 |
major cold shock protein |
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6 |
69 |
S=284 I=87 E=2.32845e-28 |
probable cold-shock protein |
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YP_363253.1 lcl|cspA-XCV1522 |
1 |
70 |
S=270 I=73 E=1.23006e-26 |
major cold shock protein |
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NP_636795.1 lcl|cspA-XCC1422 |
1 |
70 |
S=270 I=73 E=1.23006e-26 |
major cold shock protein |
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NP_641799.1 lcl|cspA-XAC1465 |
1 |
70 |
S=270 I=73 E=1.23006e-26 |
major cold shock protein |
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1 |
69 |
S=254 I=70 E=1.10602e-24 |
probable cold shock protein |
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YP_363120.1 lcl|scoF-XCV1389 |
8 |
68 |
S=200 I=61 E=3.10585e-18 |
cold shock protein |
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NP_636660.1 lcl|scoF-XCC1286 |
8 |
68 |
S=200 I=61 E=3.10585e-18 |
cold shock protein |
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NP_641672.1 lcl|scoF-XAC1337 |
8 |
68 |
S=200 I=61 E=3.10585e-18 |
cold shock protein |
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IPR002059 [PR00050] | 9 |
24 |
Cold-shock protein, DNA-binding |
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IPR002059 [PR00050] | 29 |
38 |
Cold-shock protein, DNA-binding |
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IPR002059 [PR00050] | 44 |
62 |
Cold-shock protein, DNA-binding |
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IPR012340 [G3DSA:2.40.50.140] | 6 |
71 |
Nucleic acid-binding, OB-fold |
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IPR012156 [PIRSF002599] | 6 |
71 |
Cold shock, CspA |
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[PTHR11544] | 6 |
68 |
- |
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IPR002059 [PF00313] | 7 |
69 |
Cold-shock protein, DNA-binding |
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IPR011129 [SM00357] | 8 |
71 |
Cold shock protein |
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IPR019844 [PS00352] | 20 |
38 |
Cold-shock conserved site |
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IPR016027 [SSF50249] | 7 |
70 |
Nucleic acid-binding, OB-fold-like |
Access unfiltered results
Miscellaneous analyses
![]() XFF4834R_chr24370 |
![]() DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
![]() |
![]() |
![]() XFF4834R_chr_2589 |
ID | sspA |
AC | XFF4834R_chr24380 |
LT | XFF4834R_chr24380 |
OR | XFF4834R_chr from 2812869 to 2813504 on strand - |
DE | probable stringent starvation protein A |
IP | Intracellular chloride channel; Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal-like; Glutathione S-transferase, predicted |
CL | 3.1.2.2 Activator GO:0016563 |
EC | |
GO |
InterPro Curated |
PM | |
AN | |
CC | COG: [O] Posttranslational modification, protein turnover, chaperones; |
CC | MODEL: XFF4834R |
CC | STATUS: curated by lnoel (20100521) |
MW | 23883.4 Da |
SQ | 211 aa |
........10........20........30........40........50 |
Access unfiltered results
Miscellaneous analyses
![]() XFF4834R_chr30320 |
![]() DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
![]() |
![]() |
![]() XFF4834R_chr30340 |
ID | cspA2 |
AC | XFF4834R_chr30330 |
LT | XFF4834R_chr30330 |
OR | XFF4834R_chr from 3484711 to 3484926 on strand - |
DE | major cold shock protein A |
IP | Cold shock protein; Cold shock, CspA; Nucleic acid-binding, OB-fold-like |
CL | 3.1.2.2 Activator GO:0016563 |
EC | |
GO |
InterPro DNA-dependent (GO:0006355) Molecular Function: DNA binding (GO:0003677) Molecular Function: nucleic acid binding (GO:0003676) Curated |
PM | |
AN | according to GenProtEC :- regulation -transcriptional -activator -- -cell process -adaptation to stress -temperature extremes- |
CC | COG: [K] Transcription; |
CC | MODEL: XFF4834R |
CC | STATUS: curated by darrasse (20120403) |
MW | 7945 Da |
SQ | 71 aa |
........10........20........30........40........50 |
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XFF4834R_chr24060 lcl|XFF4834R_chr26250841_2774056_r3_XFF4834R-XFF4834R_chr24060 |
1 |
70 |
S=270 I=73 E=3.12646e-27 |
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XFF4834R_chr31640 lcl|cspD-XFF4834R_chr31640 |
7 |
71 |
S=216 I=64 E=9.4962e-21 |
cold shock protein homolog |
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YP_363253.1 lcl|cspA-XCV1522 |
1 |
71 |
S=354 I=100 E=7.54609e-37 |
major cold shock protein |
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NP_636795.1 lcl|cspA-XCC1422 |
1 |
71 |
S=354 I=100 E=7.54609e-37 |
major cold shock protein |
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NP_641799.1 lcl|cspA-XAC1465 |
1 |
71 |
S=354 I=100 E=7.54609e-37 |
major cold shock protein |
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3 |
71 |
S=300 I=88 E=2.35276e-30 |
probable cold shock protein |
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NP_637642.1 lcl|cspA-XCC2287 |
5 |
71 |
S=270 I=78 E=1.24083e-26 |
major cold shock protein |
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YP_364323.1 lcl|cspA-XCV2592 |
5 |
71 |
S=264 I=75 E=6.56047e-26 |
major cold shock protein |
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NP_642711.1 lcl|cspA-XAC2395 |
5 |
71 |
S=264 I=75 E=6.56047e-26 |
major cold shock protein |
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5 |
71 |
S=242 I=73 E=2.59703e-23 |
probable cold-shock protein |
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YP_363120.1 lcl|scoF-XCV1389 |
7 |
71 |
S=216 I=64 E=3.73614e-20 |
cold shock protein |
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NP_636660.1 lcl|scoF-XCC1286 |
7 |
71 |
S=216 I=64 E=3.73614e-20 |
cold shock protein |
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NP_641672.1 lcl|scoF-XAC1337 |
7 |
71 |
S=216 I=64 E=3.73614e-20 |
cold shock protein |
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IPR002059 [PR00050] | 9 |
24 |
Cold-shock protein, DNA-binding |
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IPR002059 [PR00050] | 29 |
38 |
Cold-shock protein, DNA-binding |
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IPR002059 [PR00050] | 44 |
62 |
Cold-shock protein, DNA-binding |
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IPR012340 [G3DSA:2.40.50.140] | 6 |
71 |
Nucleic acid-binding, OB-fold |
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IPR012156 [PIRSF002599] | 6 |
71 |
Cold shock, CspA |
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[PTHR11544] | 1 |
68 |
- |
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IPR002059 [PF00313] | 6 |
70 |
Cold-shock protein, DNA-binding |
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IPR011129 [SM00357] | 8 |
71 |
Cold shock protein |
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IPR019844 [PS00352] | 20 |
38 |
Cold-shock conserved site |
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IPR016027 [SSF50249] | 6 |
71 |
Nucleic acid-binding, OB-fold-like |
Access unfiltered results
Miscellaneous analyses
![]() XFF4834R_chr30550 |
![]() DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
![]() |
![]() |
![]() XFF4834R_chr30570 |
ID | XFF4834R_chr33200798_3512649_f1_XFF4834R-XFF4834R_chr30560 |
AC | XFF4834R_chr30560 |
LT | XFF4834R_chr30560 |
OR | XFF4834R_chr from 3511798 to 3512649 on strand + |
DE | putative AraC family transcriptional regulator |
IP | 4-hydroxyphenylacetate catabolism regulatory protein hpaA; Helix-turn-helix, AraC domain |
CL | 3.1.2.2 Activator GO:0016563 |
EC | |
GO |
InterPro Cellular Component: intracellular (GO:0005622) DNA-dependent (GO:0006355) Molecular Function: transcription factor activity (GO:0003700) Molecular Function: sequence-specific DNA binding (GO:0043565) Curated |
PM | |
AN | |
CC | COG: [K] Transcription; |
CC | MODEL: XFF4834R |
CC | STATUS: curated by darrasse (20120309) |
MW | 30768.8 Da |
SQ | 283 aa |
........10........20........30........40........50 |
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XFF4834R_chr39300 lcl|XFF4834R_chr42520214_4528224_f1_XFF4834R-XFF4834R_chr39300 |
189 |
267 |
S=101 I=30 E=7.25407e-06 |
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XFF4834R_chr25740 lcl|XFF4834R_chr28300192_2984908_f2_XFF4834R-XFF4834R_chr25740 |
168 |
269 |
S=95 I=26 E=3.90281e-05 |
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XFF4834R_chr03390 lcl|XFF4834R_chr03510360_0390247_r3_XFF4834R-XFF4834R_chr03390 |
171 |
271 |
S=94 I=31 E=6.24955e-05 |
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YP_363229.1 lcl|XCV1498 |
1 |
283 |
S=1410 I=96 E=8.44278e-164 |
AraC family transcriptional regulator |
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NP_641777.1 lcl|XAC1442-XAC1442 |
13 |
283 |
S=1372 I=98 E=2.82722e-159 |
transcriptional regulator |
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NP_636770.1 lcl|XCC1396 |
1 |
283 |
S=1261 I=86 E=8.1021e-146 |
transcriptional regulator |
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NP_642552.1 lcl|yeaM-XAC2235 |
47 |
270 |
S=335 I=36 E=1.21285e-33 |
AraC family transcriptional regulator |
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YP_364077.1 lcl|XCV2346 |
168 |
269 |
S=122 I=31 E=8.22898e-08 |
AraC family transcriptional regulator |
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NP_635706.1 lcl|XCC0311 |
183 |
267 |
S=112 I=35 E=1.33976e-06 |
transcriptional regulator |
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YP_364180.1 lcl|XCV2449 |
168 |
264 |
S=112 I=31 E=1.44913e-06 |
AraC family transcriptional regulator |
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NP_637718.1 lcl|adpA-XCC2364 |
158 |
264 |
S=106 I=31 E=8.43296e-06 |
AraC family transcriptional regulator |
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NP_644363.1 lcl|ftrA-XAC4064 |
189 |
267 |
S=101 I=30 E=3.20122e-05 |
transcriptional activator FtrA |
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44 |
258 |
S=374 I=39 E=1.05285e-36 |
Transcriptional factor PhcT ; DNA-binding regulation |
Pubmed 12081966 |
|
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47 |
268 |
S=365 I=36 E=1.23072e-35 |
AraC protein ; DNA-binding Transcription regulation |
Pubmed 12904565 |
|
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47 |
267 |
S=289 I=32 E=1.9055e-26 |
Putative transcriptional regulator ; DNA-binding regulation |
||
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165 |
277 |
S=183 I=33 E=1.27321e-13 |
HTH-type transcriptional repressor of iron proteins A ; DNA-binding regulation |
Pubmed 16179344 |
|
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166 |
264 |
S=165 I=39 E=1.91488e-11 |
AraC-type transcriptional regulator ; DNA-binding regulation |
Pubmed 16291687 |
|
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184 |
266 |
S=126 I=36 E=1.20128e-06 |
HTH AraC-type regulator ; DNA-binding Transcription regulation |
Pubmed 17564599 |
|
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168 |
269 |
S=122 I=31 E=3.00072e-06 |
AraC family transcriptional regulator Putative transcriptional regulator, AraC family ; DNA-binding regulation |
||
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146 |
274 |
S=116 I=28 E=1.61444e-05 |
Arabinose operon regulatory protein ; Activator catabolism Carbohydrate metabolism Cytoplasm DNA-binding Repressor Transcription regulation |
||
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170 |
267 |
S=114 I=30 E=2.89546e-05 |
AgpT ; DNA-binding Plasmid Transcription regulation |
Pubmed 10867229 |
|
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146 |
270 |
S=113 I=29 E=3.96306e-05 |
Arabinose operon regulatory protein ; Activator catabolism Carbohydrate metabolism Cytoplasm DNA-binding Repressor Transcription regulation |
Pubmed 2965663 |
|
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47 |
269 |
S=302 I=33 E=3.77464e-28 |
Uncharacterized HTH-type transcriptional regulator yeaM ; DNA-binding regulation |
||
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IPR003313 [PF02311] | 29 |
98 |
AraC protein, arabinose-binding/dimerisation |
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IPR000005 [PF00165] | 175 |
220 |
Helix-turn-helix, AraC type |
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IPR000005 [PF00165] | 231 |
269 |
Helix-turn-helix, AraC type |
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IPR018060 [SM00342] | 186 |
268 |
Helix-turn-helix, AraC domain |
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IPR018060 [PS01124] | 170 |
270 |
Helix-turn-helix, AraC domain |
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71 |
162 |
S=180 I=42 E=2.21151e-14 |
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13 |
42 |
S=150 I=100 E=1.20773e-10 |
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43 |
73 |
S=149 I=90 E=1.27259e-10 |
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162 |
218 |
S=136 I=53 E=5.13059e-09 |
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217 |
268 |
S=135 I=46 E=7.33523e-09 |
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215 |
264 |
S=109 I=42 E=8.71076e-06 |
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223 |
269 |
S=108 I=44 E=1.28958e-05 |
Access unfiltered results
Miscellaneous analyses
![]() XFF4834R_chr38820 |
![]() DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
![]() |
![]() |
![]() XFF4834R_chr38840 |
ID | XFF4834R_chr41960527_4474255_r3_XFF4834R-XFF4834R_chr38830 |
AC | XFF4834R_chr38830 |
LT | XFF4834R_chr38830 |
OR | XFF4834R_chr from 4473527 to 4474255 on strand - |
DE | probable Type III pantothenate kinase CoaX |
IP | Bordetella pertussis Bvg accessory factor |
CL | 3.1.2.2 Activator GO:0016563 |
EC | |
GO |
InterPro Biological Process: positive regulation of transcription (GO:0045941) Molecular Function: transcription activator activity (GO:0016563) Curated |
PM | |
AN | |
CC | COG: [K] Transcription; |
CC | MODEL: XFF4834R |
CC | STATUS: curated by darrasse (20120316) |
MW | 25014.3 Da |
SQ | 242 aa |
........10........20........30........40........50 |
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COAX_MF_01274 | raw_score=1476 norm_score=14.362 | Type III pantothenate kinase [coaX]. |
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NP_644316.1 lcl|baf-XAC4017 |
1 |
242 |
S=1079 I=90 E=8.36749e-124 |
pantothenate kinase |
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YP_365840.1 lcl|XCV4109 |
1 |
242 |
S=1062 I=88 E=9.27488e-122 |
pantothenate kinase |
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NP_639276.1 lcl|baf-XCC3937 |
1 |
242 |
S=870 I=76 E=1.58966e-98 |
pantothenate kinase |
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1 |
238 |
S=664 I=61 E=1.5842e-73 |
putative transcriptional regulator, bvg accessory factor family transcription regulator protein |
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5 |
211 |
S=160 I=29 E=5.65065e-11 |
Putative uncharacterized protein ; ATP-binding Coenzyme biosynthesis Cytoplasm Kinase Nucleotide-binding Transferase |
Pubmed 16309397 |
|
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54 |
210 |
S=148 I=33 E=1.66442e-09 |
Type III pantothenate kinase EC=2.7.1.33 ; ATP-binding Coenzyme biosynthesis Cytoplasm Nucleotide-binding Transferase |
Pubmed 10417135 |
|
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48 |
233 |
S=146 I=29 E=2.85776e-09 |
Type III pantothenate kinase EC=2.7.1.33 ; Antibiotic resistance ATP-binding Coenzyme biosynthesis Cytoplasm Metal-binding Nucleotide-binding |
Pubmed 16905099 |
|
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54 |
210 |
S=145 I=33 E=3.77741e-09 |
Type III pantothenate kinase EC=2.7.1.33 ; ATP-binding Coenzyme biosynthesis Cytoplasm Nucleotide-binding Transcription regulation Transferase |
Pubmed 7601846 |
|
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68 |
233 |
S=144 I=34 E=5.89259e-09 |
Putative uncharacterized protein ; ATP-binding Coenzyme biosynthesis Cytoplasm Kinase Nucleotide-binding Transferase |
Pubmed 16309397 |
|
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68 |
209 |
S=132 I=32 E=1.48359e-07 |
Type III pantothenate kinase EC=2.7.1.33 ; ATP-binding Coenzyme biosynthesis Cytoplasm Metal-binding Nucleotide-binding Transferase |
Pubmed 18700039 |
|
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87 |
179 |
S=123 I=33 E=2.17549e-06 |
Type III pantothenate kinase EC=2.7.1.33 ; ATP-binding Coenzyme biosynthesis Cytoplasm Metal-binding Nucleotide-binding Transferase |
Pubmed 19008447 |
|
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1 |
242 |
S=1079 I=90 E=2.11152e-122 |
Type III pantothenate kinase EC=2.7.1.33 ; ATP-binding Coenzyme biosynthesis Cytoplasm Nucleotide-binding Transferase |
||
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1 |
242 |
S=1062 I=88 E=2.34049e-120 |
Type III pantothenate kinase EC=2.7.1.33 ; ATP-binding Coenzyme biosynthesis Cytoplasm Nucleotide-binding Transferase |
||
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1 |
242 |
S=1012 I=87 E=2.39051e-114 |
Type III pantothenate kinase EC=2.7.1.33 ; ATP-binding Coenzyme biosynthesis Cytoplasm Nucleotide-binding Transferase |
||
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1 |
242 |
S=1012 I=87 E=2.39051e-114 |
Type III pantothenate kinase EC=2.7.1.33 ; ATP-binding Coenzyme biosynthesis Cytoplasm Nucleotide-binding Transferase |
||
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1 |
242 |
S=1012 I=87 E=2.39051e-114 |
Type III pantothenate kinase EC=2.7.1.33 ; ATP-binding Coenzyme biosynthesis Cytoplasm Nucleotide-binding Transferase |
||
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[MF_01274] | 2 |
240 |
- |
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IPR004619 [PF03309] | 3 |
193 |
Bordetella pertussis Bvg accessory factor |
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IPR004619 [TIGR00671] | 3 |
237 |
Bordetella pertussis Bvg accessory factor |
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[seg] | 28 |
43 |
- |
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[seg] | 212 |
219 |
- |
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50 |
85 |
S=175 I=97 E=9.37023e-14 |
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1 |
49 |
S=170 I=65 E=4.08949e-13 |
Access unfiltered results
![]() |
Set of Uniprot with relevant PubMed cross-references ncbi-blastp |
7 hits |
![]() |
Swiss-Prot ncbi-blastp |
123 hits |
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Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp |
0 hits |
![]() |
HAMAP scan |
0 hits |
![]() |
IprScan |
5 hits |
Miscellaneous analyses
![]() XFF4834R_chr39290 |
![]() DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
![]() |
![]() |
![]() XFF4834R_chr39310 |
ID | ftrA |
AC | XFF4834R_chr39300 |
LT | XFF4834R_chr39300 |
OR | XFF4834R_chr from 4527214 to 4528224 on strand + |
DE | Transcriptional activator FtrA |
IP | ThiJ/PfpI; Helix-turn-helix, AraC domain |
CL | 3.1.2.2 Activator GO:0016563 |
EC | |
GO |
InterPro Biological Process: regulation of transcription (GO:0045449) Cellular Component: intracellular (GO:0005622) DNA-dependent (GO:0006355) Molecular Function: transcription factor activity (GO:0003700) Molecular Function: sequence-specific DNA binding (GO:0043565) Molecular Function: DNA binding (GO:0003677) Curated |
PM | |
AN | 58% id with FtrA (Caulobacter crescentus) |
CC | COG: [K] Transcription; |
CC | MODEL: XFF4834R |
CC | STATUS: curated by darrasse (20120316) |
MW | 36469.5 Da |
SQ | 336 aa |
........10........20........30........40........50 |
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XFF4834R_chr22820 lcl|XFF4834R_chr24870286_2640708_r1_XFF4834R-XFF4834R_chr22820 |
243 |
322 |
S=114 I=40 E=2.40903e-07 |
predicted DNA-binding transcriptional regulator |
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XFF4834R_chr25740 lcl|XFF4834R_chr28300192_2984908_f2_XFF4834R-XFF4834R_chr25740 |
225 |
327 |
S=112 I=27 E=4.35837e-07 |
![]() |
XFF4834R_chr17900 lcl|XFF4834R_chr19080421_2048329_r3_XFF4834R-XFF4834R_chr17900 |
243 |
335 |
S=102 I=27 E=8.74746e-06 |
predicted DNA-binding transcriptional regulator |
![]() |
XFF4834R_chr30560 lcl|XFF4834R_chr33200798_3512649_f1_XFF4834R-XFF4834R_chr30560 |
243 |
322 |
S=101 I=30 E=9.96965e-06 |
predicted DNA-binding transcriptional regulator |
![]() |
XFF4834R_chr05920 lcl|XFF4834R_chr06130827_0667771_f2_XFF4834R-XFF4834R_chr05920 |
226 |
324 |
S=98 I=31 E=2.51217e-05 |
![]() |
NP_644363.1 lcl|ftrA-XAC4064 |
1 |
336 |
S=1639 I=94 E=0 |
transcriptional activator FtrA |
![]() |
NP_637718.1 lcl|adpA-XCC2364 |
14 |
326 |
S=563 I=40 E=4.03801e-61 |
AraC family transcriptional regulator |
![]() |
NP_638911.2 lcl|XCC3565 |
71 |
196 |
S=166 I=34 E=4.57828e-13 |
ThiJ/PfpI family protein |
![]() |
NP_635706.1 lcl|XCC0311 |
243 |
325 |
S=145 I=35 E=1.79663e-10 |
transcriptional regulator |
![]() |
YP_364077.1 lcl|XCV2346 |
243 |
322 |
S=121 I=33 E=1.53184e-07 |
AraC family transcriptional regulator |
![]() |
NP_642483.2 lcl|XAC2166-XAC2166 |
243 |
322 |
S=115 I=40 E=8.53404e-07 |
transcriptional regulator |
![]() |
YP_364180.1 lcl|XCV2449 |
243 |
324 |
S=113 I=30 E=1.40277e-06 |
AraC family transcriptional regulator |
![]() |
NP_637770.1 lcl|XCC2416 |
225 |
327 |
S=113 I=27 E=1.49105e-06 |
transcriptional regulator |
![]() |
YP_362360.1 lcl|XCV0629 |
98 |
212 |
S=112 I=35 E=1.62688e-06 |
putative secreted protein |
![]() |
YP_364480.1 lcl|XCV2749 |
225 |
327 |
S=112 I=27 E=1.64113e-06 |
AraC family transcriptional regulator |
![]() |
16 |
319 |
S=632 I=43 E=6.77196e-68 |
AdpA ; DNA-binding Transcription regulation |
Pubmed 10540289 |
|
![]() |
17 |
328 |
S=620 I=44 E=1.84417e-66 |
Putative AraC-family transcriptional regulator ; DNA-binding regulation |
||
![]() |
13 |
326 |
S=560 I=40 E=3.78043e-59 |
Putative AraC-family transcription regulator Transcriptional regulator ; DNA-binding regulation |
Pubmed 15113000, |