Xanthomonas fuscans subsp. fuscans

9 hits

  1. XFF4834R_chr05200fisXFF4834R_chr05200global DNA-binding transcriptional dual regulator (factor-for-inversion stimulation protein)
  2. XFF4834R_chr09660nusGXFF4834R_chr09660transcription antitermination protein NusG
  3. XFF4834R_chr14950argPXFF4834R_chr14950DNA-binding transcriptional activator, replication initiation inhibitor
  4. XFF4834R_chr24060cspA1XFF4834R_chr24060major cold shock protein CspA
  5. XFF4834R_chr24380sspAXFF4834R_chr24380probable stringent starvation protein A
  6. XFF4834R_chr30330cspA2XFF4834R_chr30330major cold shock protein A
  7. XFF4834R_chr30560XFF4834R_chr33200798_3512649_f1_XFF4834R-XFF4834R_chr30560XFF4834R_chr30560putative AraC family transcriptional regulator
  8. XFF4834R_chr38830XFF4834R_chr41960527_4474255_r3_XFF4834R-XFF4834R_chr38830XFF4834R_chr38830probable Type III pantothenate kinase CoaX
  9. XFF4834R_chr39300ftrAXFF4834R_chr39300Transcriptional activator FtrA

fis XFF4834R_chr05200
XFF4834R_chr05190
XFF4834R_chr05190 		Cluster
DrawMap 		XML file

FASTA file 		Extract
Sequence 		Codon
Usage 		Framed OrthoMCL XFF4834R_chr05210
XFF4834R_chr05210
ID fis
AC XFF4834R_chr05200
LT XFF4834R_chr05200
OR XFF4834R_chr from 586636 to 586908 on strand -
DE global DNA-binding transcriptional dual regulator (factor-for-inversion stimulation protein)
IP DNA-binding protein Fis
CL 3.1.2.2 Activator GO:0016563
EC
GO InterPro
DNA-dependent (GO:0006355)
Molecular Function: transcription factor activity (GO:0003700)
Molecular Function: DNA binding (GO:0003677)

Curated
PM
AN
CC COG: [KL] Transcription;Replication, recombination and repair;
CC MODEL: XFF4834R
CC STATUS: curated by darrasse (20120319)
MW 10132.4 Da
SQ 90 aa
  
........10........20........30........40........50
         |         |         |         |         |
MNAAPSRPDTSRGAPKSPLREHVAQSVRRYLRDLDGSDADDVYEIVLREM
EIPLFVEVLNHCEGNQSRAAAMLGIHRATLRKKLKEYGLT

    






    

        
            
                XFF4834R
            
                
        
XFF4834R_chr01970 lcl|XFF4834R_chr02090240_0235586_f3_XFF4834R-XFF4834R_chr01970

        
49

	
89

	
S=89 I=44 E=3.90548e-05

	

     	

   





    

        
            
                X.species
            
                
        
YP_362287.1 lcl|fis-XCV0556

        
1

	
90

	
S=472 I=100 E=4.03754e-51

	
DNA-binding protein Fis

     	

   





    

        
            
                X.species
            
                
        
NP_640875.1 lcl|fis-XAC0522

        
1

	
90

	
S=472 I=100 E=4.03754e-51

	
DNA-binding protein Fis

     	

   





    

        
            
                X.species
            
                
        
NP_635900.1 lcl|fis-XCC0508

        
1

	
90

	
S=469 I=99 E=1.0535e-50

	
DNA-binding protein Fis

     	

   





    

        
            
                X.species
            
                
        
 lcl|fis-XALc_0309

        
1

	
89

	
S=424 I=91 E=2.78553e-45

	
probable dna-binding protein fis (factor-for-inversion stimulation protein)

     	

   





    

        
            
                X.species
            
                
        
YP_361963.1 lcl|XCV0232

        
44

	
89

	
S=96 I=48 E=1.45064e-05

	
sigma 54-dependent response regulator

     	

   





    

        
                pubmed
        
        

        
14

	
89

	
S=218 I=50 E=1.09833e-18

	
DNA-binding protein fis ; Activator Transcription regulation

	
Pubmed 9811652

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
6

	
89

	
S=218 I=46 E=1.20888e-18

	
Fis ; Activator DNA-binding Transcription regulation

	
Pubmed 15294770

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
6

	
89

	
S=218 I=46 E=1.20888e-18

	
Fis ; Activator DNA-binding Transcription regulation

	
Pubmed 15294770

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
6

	
89

	
S=218 I=46 E=1.20888e-18

	
Fis ; Activator DNA-binding Transcription regulation

	
Pubmed 15294770

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
6

	
89

	
S=217 I=46 E=1.25178e-18

	
Fis ; Activator DNA-binding Transcription regulation

	
Pubmed 15294770

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
6

	
89

	
S=217 I=46 E=1.25178e-18

	
Fis ; Activator DNA-binding Transcription regulation

	
Pubmed 15294770

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
6

	
89

	
S=217 I=46 E=1.25178e-18

	
DNA-binding protein fis ; Activator Transcription regulation

	
Pubmed 9811652

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
6

	
89

	
S=217 I=46 E=1.25178e-18

	
DNA-binding protein fis ; Activator Transcription regulation

	
Pubmed 7536730

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
6

	
89

	
S=217 I=46 E=1.25178e-18

	
DNA-binding protein fis ; Activator Transcription regulation

	
Pubmed 2835774,2837762

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
6

	
89

	
S=216 I=46 E=1.77414e-18

	
DNA-binding protein fis ; Activator Transcription regulation

	
Pubmed 9811652

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
1

	
90

	
S=472 I=100 E=1.05004e-49

	
Putative fis-like DNA-binding protein

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
1

	
90

	
S=469 I=99 E=2.73983e-49

	
Putative fis-like DNA-binding protein

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
1

	
90

	
S=412 I=84 E=2.20957e-42

	
Putative fis-like DNA-binding protein

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
1

	
90

	
S=403 I=82 E=2.76946e-41

	
Putative fis-like DNA-binding protein

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
18

	
89

	
S=226 I=56 E=7.6802e-20

	
DNA-binding protein fis ; Activator Transcription regulation

	

    

    

         
        
prodomImg

    





    

        Iprscan
        
	[G3DSA:1.10.1680.10]
	
5

	
90

	
	
-

    





    

        Iprscan
        IPR005412
	[PIRSF002097]
	
1

	
90

	
	
DNA-binding protein Fis

    





    

        Iprscan
        IPR002197
	[PF02954]
	
47

	
87

	
	
Helix-turn-helix, Fis-type

    





    

        
            
                
            
                
        
PD362379

        
1

	
46

	
S=223 I=93 E=1.54032e-19

    	
    





    

        
            
                
            
                
        
PD947233

        
23

	
83

	
S=135 I=43 E=7.4667e-09

    	
    




Show or not Suggestions
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ID


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EC


GO


PM



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  Validation code (copy this one 2oFBf3IH)  
 
     



Show or not Access unfiltered results






    

       
            
                pubmed
            
        
	    
            
Set of Uniprot with relevant PubMed cross-references ncbi-blastp

        		
 	    
            24 hits
        
    

    

        
            
                swiss-prot
            
        
	    
            
Swiss-Prot ncbi-blastp

        		
 	    
            121 hits
        
    

    
    
    

        
            
                XFF4834R
            
        
    	
            
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp

        		        
        
            1 hits
        
    

        
    

        
            
                hamap
            
        
	
            
HAMAP scan

        		        
        
            0 hits
        
    

    
    

	    
            
                Interpro Scan
            
            
	        
                
IprScan

            		        
            
                9 hits
            
    








Show or not Miscellaneous analyses




    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetLocalBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBOyYv5N/XFF4834R_chr05200.xml_fasta", "https://iant.toulouse.inra.fr/bacteria/annotation/web/img/XFF4834R.png"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    
    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetNcbiBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBOyYv5N/XFF4834R_chr05200.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetUniprotBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBOyYv5N/XFF4834R_chr05200.xml_fasta"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetKeggBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBOyYv5N/XFF4834R_chr05200.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    

    






nusG XFF4834R_chr09660




    

         
             
            XFF4834R_chr09650
            
XFF4834R_chr09650
            
        		


       
           
	   Cluster
	   
DrawMap
	   
        		
	
        
            XML file
        	


	    FASTA file
        		
	
	
             
            Extract
Sequence
            
        		
	
	
             
            Codon
Usage
            
        		
    
    
            
            Framed
            
     
  	



	
            OrthoMCL
            
    
  	
    
    
    

     


	
             
            XFF4834R_chr09670
            
XFF4834R_chr09670
            
        		

    





    

        ID
        nusG
    

    

        AC
        XFF4834R_chr09660
    

    

        LT
        XFF4834R_chr09660
    

    

        OR
        XFF4834R_chr from 1102916 to 1103473 on strand +
    

   

        DE
        transcription antitermination protein NusG
  

   

        IP
        Transcription antitermination protein, NusG; Ribosomal protein L26e, archaeal
  
  
  
  

        CL
        3.1.2.2 Activator	GO:0016563 
    

  

        EC
        
    

    
    

        GO
        
            InterPro
Biological Process: positive regulation of RNA elongation from RNA polymerase II promoter (GO:0032968)
DNA-dependent (GO:0006355)
Molecular Function: transcription elongation regulator activity (GO:0003711)


            Curated

        		
    


  

        PM
        
    

  

        AN
        
    

  

        CC
        COG: [K] Transcription; 
    

    

        CC
        MODEL: XFF4834R 
  
    
  

        CC
        STATUS: curated by darrasse (20120314)
  

  
  


    

        MW
        21190 Da
    


    

        SQ
        185 aa
    

    

         
        
........10........20........30........40........50
         |         |         |         |         |
MKRWYVVHAYSGFEKSVAQALRDRIARAEMEDRFGDVLVPTEEVIEMRAG
QKRRSERKFFPGYVLVQIETHEEAGIPRIDNESWHLVKETSKVMGFIGGT
ADRPLPIRDEEADAILQRVQDGVEKPRPKVLFEPGQMVRVTEGPFNDFNG
VVEEVNYEKSRLRVAVLIFGRSTPVELEFGQVEKG

    





Show or not Domain decomposition
 

    

        
            
                X.species
            
                
        
NP_641307.1 lcl|nusG-XAC0960

        
1

	
185

	
S=955 I=99 E=5.53506e-109

	
transcription antitermination protein NusG

     	

   





    

        
            
                X.species
            
                
        
YP_362717.1 lcl|nusG-XCV0986

        
1

	
185

	
S=953 I=99 E=9.84083e-109

	
transcription antitermination protein NusG

     	

   





    

        
            
                X.species
            
                
        
NP_636269.1 lcl|nusG-XCC0883

        
1

	
185

	
S=936 I=97 E=1.0352e-106

	
transcription antitermination protein NusG

     	

   





    

        
            
                X.species
            
                
        
 lcl|nusG-XALc_0502

        
1

	
185

	
S=911 I=94 E=1.17689e-103

	
probable transcription antitermination protein nusg

     	

   





    

        Iprscan
        IPR001062
	[PR00338]
	
56

	
68

	
	
Transcription antitermination protein, NusG

    





    

        Iprscan
        IPR001062
	[PR00338]
	
143

	
158

	
	
Transcription antitermination protein, NusG

    





    

        Iprscan
        IPR001062
	[PR00338]
	
161

	
177

	
	
Transcription antitermination protein, NusG

    





    

        Iprscan
        IPR006645
	[G3DSA:3.30.70.940]
	
1

	
123

	
	
Transcription antitermination protein, NusG, N-terminal

    





    

        Iprscan
        IPR014722
	[G3DSA:2.30.30.30]
	
123

	
185

	
	
Translation protein SH3-like, subgroup

    





    

        Iprscan
        IPR006645
	[PF02357]
	
2

	
110

	
	
Transcription antitermination protein, NusG, N-terminal

    





    

        Iprscan
        IPR005824
	[PF00467]
	
134

	
164

	
	
KOW

    





    

        Iprscan
        IPR006645
	[SM00738]
	
1

	
119

	
	
Transcription antitermination protein, NusG, N-terminal

    





    

        Iprscan
        IPR005824
	[SM00739]
	
131

	
158

	
	
KOW

    





    

        Iprscan
        IPR001062
	[TIGR00922]
	
4

	
185

	
	
Transcription antitermination protein, NusG

    





    

        Iprscan
        IPR015869
	[PS01014]
	
168

	
177

	
	
Transcription antitermination protein, NusG, bacteria, conserved site

    





    

        Iprscan
        IPR006645
	[SSF82679]
	
1

	
122

	
	
Transcription antitermination protein, NusG, N-terminal

    





    

        Iprscan
        IPR008991
	[SSF50104]
	
128

	
185

	
	
Translation protein SH3-like

    




Show or not Suggestions
Suggest an annotation


Move your mouse over each field to get more informations


ID


DE


EC


GO


PM



CC


CL

 
  Your email  
 
  Validation code (copy this one UlGCwyWj)  
 
     



Show or not Access unfiltered results






    

       
            
                pubmed
            
        
	    
            
Set of Uniprot with relevant PubMed cross-references ncbi-blastp

        		
 	    
            26 hits
        
    

    

        
            
                swiss-prot
            
        
	    
            
Swiss-Prot ncbi-blastp

        		
 	    
            64 hits
        
    

    
    
    

        
            
                XFF4834R
            
        
    	
            
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp

        		        
        
            0 hits
        
    

        
    

        
            
                hamap
            
        
	
            
HAMAP scan

        		        
        
            0 hits
        
    

    
    

	    
            
                Interpro Scan
            
            
	        
                
IprScan

            		        
            
                13 hits
            
    








Show or not Miscellaneous analyses




    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetLocalBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBOyYv5N/XFF4834R_chr09660.xml_fasta", "https://iant.toulouse.inra.fr/bacteria/annotation/web/img/XFF4834R.png"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    
    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetNcbiBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBOyYv5N/XFF4834R_chr09660.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetUniprotBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBOyYv5N/XFF4834R_chr09660.xml_fasta"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetKeggBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBOyYv5N/XFF4834R_chr09660.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    

    






argP XFF4834R_chr14950




    

         
             
            XFF4834R_chr14940
            
XFF4834R_chr14940
            
        		


       
           
	   Cluster
	   
DrawMap
	   
        		
	
        
            XML file
        	


	    FASTA file
        		
	
	
             
            Extract
Sequence
            
        		
	
	
             
            Codon
Usage
            
        		
    
    
            
            Framed
            
     
  	



	
            OrthoMCL
            
    
  	
    
    
    

     


	
             
            XFF4834R_chr14960
            
XFF4834R_chr14960
            
        		

    





    

        ID
        argP
    

    

        AC
        XFF4834R_chr14950
    

    

        LT
        XFF4834R_chr14950
    

    

        OR
        XFF4834R_chr from 1714621 to 1715523 on strand -
    

   

        DE
        DNA-binding transcriptional activator, replication initiation inhibitor
  

   

        IP
        Bacterial regulatory protein, LysR; LysR, substrate-binding
  
  
  
  

        CL
        3.1.2.2 Activator	GO:0016563 
    

  

        EC
        
    

    
    

        GO
        
            InterPro
DNA-dependent (GO:0006355)
Molecular Function: transcription factor activity (GO:0003700)


            Curated

        		
    


  

        PM
        
    

  

        AN
        
    

  

        CC
        COG: [K] Transcription; 
    

    

        CC
        MODEL: XFF4834R 
  
    
  

        CC
        STATUS: validated by darrasse (20120314)
  

  
  


    

        MW
        32673.4 Da
    


    

        SQ
        300 aa
    

    

         
        
........10........20........30........40........50
         |         |         |         |         |
MDLLHPQLAAFAAVLEEGSFDAAAQRLALTPSAISQRIKALEDRLGQVLV
MRTAPCRPTPAGERLLRRLKPMQVLEAEAVADFLPADGIAGHPRTLAIAV
NDDSLQTWFLQALSSLHRAHGFLFDVQMDDQDHTLELLRAGSVLGAVTSE
RASLQGCNVQALGVMRYHAIASAAFVAAHFQGGFTAHALGKAPMLVFNRK
DTLQARFVRRITRTRLTPPTHYLPTSTGFVEAAARGLGWCLAPEAMVLPA
VRNKQVVIIDPTRWLDVPLYWQYAAVRSNALQQLSQALCKAAATSLRGSR

    






    

        
            
                XFF4834R
            
                
        
XFF4834R_chr06800 lcl|XFF4834R_chr07150040_0780948_f1_XFF4834R-XFF4834R_chr06800

        
1

	
120

	
S=103 I=34 E=4.60048e-06

	
predicted DNA-binding transcriptional regulator

     	

   





    

        
            
                XFF4834R
            
                
        
XFF4834R_chr41800 lcl|XFF4834R_chr_4862828_4863730_r3_XFF4834R-XFF4834R_chr41800

        
7

	
71

	
S=101 I=47 E=9.08135e-06

	
predicted DNA-binding transcriptional regulator

     	

   





    

        
            
                XFF4834R
            
                
        
XFF4834R_chr29860 lcl|XFF4834R_chr32430654_3431766_f1_XFF4834R-XFF4834R_chr29860

        
7

	
120

	
S=101 I=32 E=9.82266e-06

	

     	

   





    

        
            
                XFF4834R
            
                
        
XFF4834R_chr37280 lcl|XFF4834R_chr40410318_4311265_r3_XFF4834R-XFF4834R_chr37280

        
8

	
83

	
S=99 I=39 E=1.58667e-05

	

     	

   





    

        
            
                XFF4834R
            
                
        
XFF4834R_chr05050 lcl|XFF4834R_chr05180587_0570588_r1_XFF4834R-XFF4834R_chr05050

        
7

	
66

	
S=96 I=44 E=3.2151e-05

	

     	

   





    

        
            
                XFF4834R
            
                
        
XFF4834R_chr11880 lcl|XFF4834R_chr12460277_1335161_r2_XFF4834R-XFF4834R_chr11880

        
1

	
76

	
S=95 I=41 E=4.4391e-05

	

     	

   





    

        
            
                XFF4834R
            
                
        
XFF4834R_chr30170 lcl|XFF4834R_chr32750197_3468231_f1_XFF4834R-XFF4834R_chr30170

        
11

	
53

	
S=94 I=47 E=6.07587e-05

	

     	

   





    

        
            
                XFF4834R
            
                
        
XFF4834R_chr27640 lcl|XFF4834R_chr30210469_3191413_r3_XFF4834R-XFF4834R_chr27640

        
13

	
67

	
S=93 I=46 E=8.76278e-05

	
predicted DNA-binding transcriptional regulator

     	

   





    

        
            
                X.species
            
                
        
YP_364995.1 lcl|iciA-XCV3264

        
1

	
300

	
S=1369 I=88 E=8.33844e-159

	
chromosome replication initiation inhibitor protein

     	

   





    

        
            
                X.species
            
                
        
NP_643443.1 lcl|XAC3134-XAC3134

        
1

	
300

	
S=1360 I=89 E=9.25039e-158

	
chromosome replication initiation inhibitor protein

     	

   





    

        
            
                X.species
            
                
        
NP_638303.1 lcl|XCC2955

        
1

	
297

	
S=1109 I=72 E=2.23396e-127

	
chromosome replication initiation inhibitor protein

     	

   





    

        
            
                X.species
            
                
        
NP_640658.1 lcl|XAC0302-XAC0302

        
7

	
71

	
S=116 I=44 E=5.04822e-07

	
LysR family transcriptional regulator

     	

   





    

        
            
                X.species
            
                
        
NP_635680.1 lcl|XCC0285

        
7

	
71

	
S=115 I=44 E=6.55743e-07

	
LysR family transcriptional regulator

     	

   





    

        
            
                X.species
            
                
        
YP_364731.1 lcl|XCV3000

        
7

	
83

	
S=112 I=41 E=1.46249e-06

	
LysR family transcriptional regulator

     	

   





    

        
            
                X.species
            
                
        
NP_636853.1 lcl|oxyR-XCC1481

        
7

	
120

	
S=109 I=32 E=3.12261e-06

	
hydrogen peroxide-inducible genes activator protein

     	

   





    

        
            
                X.species
            
                
        
YP_362463.1 lcl|XCV0732

        
1

	
120

	
S=108 I=34 E=4.87113e-06

	
LysR family transcriptional regulator

     	

   





    

        
            
                X.species
            
                
        
NP_641024.1 lcl|XAC0671-XAC0671

        
1

	
120

	
S=108 I=34 E=5.08817e-06

	
transcriptional regulator

     	

   





    

        
            
                X.species
            
                
        
YP_363303.1 lcl|XCV1572

        
7

	
120

	
S=105 I=33 E=1.22744e-05

	
LysR family transcriptional regulator

     	

   





    

        
                pubmed
        
        

        
7

	
272

	
S=494 I=41 E=3.27761e-51

	
Transcriptional regulator ; DNA-binding regulation

	
Pubmed 16707707

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
4

	
297

	
S=441 I=37 E=7.21029e-45

	
Lysine export transcriptional regulatory protein lysG ; DNA-binding regulation

	
Pubmed 8971704

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
8

	
297

	
S=418 I=35 E=4.49152e-42

	
Chromosome initiation inhibitor ; DNA-binding Transcription regulation

	
Pubmed 9286976

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
8

	
297

	
S=382 I=33 E=1.2095e-37

	
Chromosome initiation inhibitor ; DNA-binding Transcription regulation

	
Pubmed 2034653

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
8

	
297

	
S=370 I=34 E=3.41064e-36

	
Chromosome initiation inhibitor ; DNA-binding Transcription regulation

	
Pubmed 12542086

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
14

	
288

	
S=284 I=28 E=8.44874e-26

	
Putative uncharacterized protein ; DNA-binding Transcription regulation

	
Pubmed 11401961

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
7

	
151

	
S=133 I=35 E=1.80827e-07

	
Nitrogen assimilation transcriptional activator NtcB protein ; DNA-binding regulation

	
Pubmed 8990301,11069684

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
7

	
94

	
S=127 I=44 E=8.24356e-07

	
Probable HTH-type transcriptional regulator lrrA ; DNA-binding regulation

	
Pubmed 8661945

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
7

	
70

	
S=124 I=48 E=1.80676e-06

	
Probable nitrogen assimilation transcriptional activator ; DNA-binding regulation

	
Pubmed 7814317

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
8

	
66

	
S=117 I=47 E=1.4266e-05

	
Putative transcriptional regulator ; DNA-binding regulation

	
Pubmed 12055289

    

    

         
        
prodomImg

    





    

        Iprscan
        IPR011991
	[G3DSA:1.10.10.10]
	
3

	
88

	
	
Winged helix repressor DNA-binding

    





    

        Iprscan
        IPR000847
	[PF00126]
	
7

	
63

	
	
HTH transcriptional regulator, LysR

    





    

        Iprscan
        IPR005119
	[PF03466]
	
89

	
297

	
	
LysR, substrate-binding

    





    

        Iprscan
        IPR017685
	[TIGR03298]
	
3

	
296

	
	
Transcriptional regulator, ArgP

    





    

        Iprscan
        IPR000847
	[PS50931]
	
1

	
59

	
	
HTH transcriptional regulator, LysR

    





    

        Iprscan
        
	[seg]
	
169

	
178

	
	
-

    





    

        Iprscan
        
	[seg]
	
209

	
220

	
	
-

    





    

        
            
                
            
                
        
PD013561

        
93

	
208

	
S=276 I=50 E=4.98618e-26

    	
    





    

        
            
                
            
                
        
PDA1X6I1

        
55

	
95

	
S=205 I=93 E=2.16165e-17

    	
    





    

        
            
                
            
                
        
PDA1G3B9

        
221

	
292

	
S=181 I=43 E=1.71889e-14

    	
    





    

        
            
                
            
                
        
PD862041

        
8

	
46

	
S=110 I=56 E=7.25951e-06

    	
    




Show or not Suggestions
Suggest an annotation


Move your mouse over each field to get more informations


ID


DE


EC


GO


PM



CC


CL

 
  Your email  
 
  Validation code (copy this one ExgZF1hb)  
 
     



Show or not Access unfiltered results






    

       
            
                pubmed
            
        
	    
            
Set of Uniprot with relevant PubMed cross-references ncbi-blastp

        		
 	    
            19 hits
        
    

    

        
            
                swiss-prot
            
        
	    
            
Swiss-Prot ncbi-blastp

        		
 	    
            90 hits
        
    

    
    
    

        
            
                XFF4834R
            
        
    	
            
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp

        		        
        
            9 hits
        
    

        
    

        
            
                hamap
            
        
	
            
HAMAP scan

        		        
        
            0 hits
        
    

    
    

	    
            
                Interpro Scan
            
            
	        
                
IprScan

            		        
            
                9 hits
            
    








Show or not Miscellaneous analyses




    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetLocalBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBOyYv5N/XFF4834R_chr14950.xml_fasta", "https://iant.toulouse.inra.fr/bacteria/annotation/web/img/XFF4834R.png"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    
    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetNcbiBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBOyYv5N/XFF4834R_chr14950.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetUniprotBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBOyYv5N/XFF4834R_chr14950.xml_fasta"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetKeggBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBOyYv5N/XFF4834R_chr14950.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    

    






cspA1 XFF4834R_chr24060




    

         
             
            XFF4834R_chr24050
            
XFF4834R_chr24050
            
        		


       
           
	   Cluster
	   
DrawMap
	   
        		
	
        
            XML file
        	


	    FASTA file
        		
	
	
             
            Extract
Sequence
            
        		
	
	
             
            Codon
Usage
            
        		
    
    
            
            Framed
            
     
  	



	
            OrthoMCL
            
    
  	
    
    
    

     


	
             
            XFF4834R_chr24070
            
XFF4834R_chr24070
            
        		

    





    

        ID
        cspA1
    

    

        AC
        XFF4834R_chr24060
    

    

        LT
        XFF4834R_chr24060
    

    

        OR
        XFF4834R_chr from 2773841 to 2774056 on strand -
    

   

        DE
        major cold shock protein CspA
  

   

        IP
        Cold shock, CspA; Nucleic acid-binding, OB-fold-like
  
  
  
  

        CL
        3.1.2.2 Activator	GO:0016563 
    

  

        EC
        
    

    
    

        GO
        
            InterPro
DNA-dependent (GO:0006355)
Molecular Function: nucleic acid binding (GO:0003676)
Molecular Function: DNA binding (GO:0003677)


            Curated

        		
    


  

        PM
        
    

  

        AN
        according to GenProtEC :- regulation -transcriptional -activator -- -cell process -adaptation to stress -temperature extremes-
    

  

        CC
        COG: [K] Transcription; 
    

    

        CC
        MODEL: XFF4834R 
  
    
  

        CC
        STATUS: curated by darrasse (20120403)
  

  
  


    

        MW
        7649.6 Da
    


    

        SQ
        71 aa
    

    

         
        
........10........20........30........40........50
         |         |         |         |         |
MSDASRQSGVVKWFNDAKGFGFITPESGPDLFVHFRAIQGTGFKSLQEGQ
KVTFVAVQGQKGMQADQVQAG

    





Show or not Domain decomposition
 

    

        
            
                XFF4834R
            
                
        
XFF4834R_chr30330 lcl|XFF4834R_chr32940711_3484926_r1_XFF4834R-XFF4834R_chr30330

        
1

	
70

	
S=270 I=73 E=3.12646e-27

	

     	

   





    

        
            
                XFF4834R
            
                
        
XFF4834R_chr31640 lcl|cspD-XFF4834R_chr31640

        
8

	
68

	
S=200 I=61 E=7.8942e-19

	
cold shock protein homolog

     	

   





    

        
            
                XFF4834R
            
                
        
XFF4834R_chr23370 lcl|XFF4834R_chr25540883_2704497_f1_XFF4834R-XFF4834R_chr23370

        
6

	
69

	
S=85 I=37 E=8.36609e-05

	

     	

   





    

        
            
                X.species
            
                
        
YP_364323.1 lcl|cspA-XCV2592

        
4

	
70

	
S=328 I=96 E=9.77753e-34

	
major cold shock protein

     	

   





    

        
            
                X.species
            
                
        
NP_642711.1 lcl|cspA-XAC2395

        
4

	
70

	
S=328 I=96 E=9.77753e-34

	
major cold shock protein

     	

   





    

        
            
                X.species
            
                
        
NP_637642.1 lcl|cspA-XCC2287

        
1

	
70

	
S=327 I=94 E=1.46019e-33

	
major cold shock protein

     	

   





    

        
            
                X.species
            
                
        
 lcl|cspA2-XALc_1104

        
6

	
69

	
S=284 I=87 E=2.32845e-28

	
probable cold-shock protein

     	

   





    

        
            
                X.species
            
                
        
YP_363253.1 lcl|cspA-XCV1522

        
1

	
70

	
S=270 I=73 E=1.23006e-26

	
major cold shock protein

     	

   





    

        
            
                X.species
            
                
        
NP_636795.1 lcl|cspA-XCC1422

        
1

	
70

	
S=270 I=73 E=1.23006e-26

	
major cold shock protein

     	

   





    

        
            
                X.species
            
                
        
NP_641799.1 lcl|cspA-XAC1465

        
1

	
70

	
S=270 I=73 E=1.23006e-26

	
major cold shock protein

     	

   





    

        
            
                X.species
            
                
        
 lcl|cspA1-XALc_1131

        
1

	
69

	
S=254 I=70 E=1.10602e-24

	
probable cold shock protein

     	

   





    

        
            
                X.species
            
                
        
YP_363120.1 lcl|scoF-XCV1389

        
8

	
68

	
S=200 I=61 E=3.10585e-18

	
cold shock protein

     	

   





    

        
            
                X.species
            
                
        
NP_636660.1 lcl|scoF-XCC1286

        
8

	
68

	
S=200 I=61 E=3.10585e-18

	
cold shock protein

     	

   





    

        
            
                X.species
            
                
        
NP_641672.1 lcl|scoF-XAC1337

        
8

	
68

	
S=200 I=61 E=3.10585e-18

	
cold shock protein

     	

   





    

        Iprscan
        IPR002059
	[PR00050]
	
9

	
24

	
	
Cold-shock protein, DNA-binding

    





    

        Iprscan
        IPR002059
	[PR00050]
	
29

	
38

	
	
Cold-shock protein, DNA-binding

    





    

        Iprscan
        IPR002059
	[PR00050]
	
44

	
62

	
	
Cold-shock protein, DNA-binding

    





    

        Iprscan
        IPR012340
	[G3DSA:2.40.50.140]
	
6

	
71

	
	
Nucleic acid-binding, OB-fold

    





    

        Iprscan
        IPR012156
	[PIRSF002599]
	
6

	
71

	
	
Cold shock, CspA

    





    

        Iprscan
        
	[PTHR11544]
	
6

	
68

	
	
-

    





    

        Iprscan
        IPR002059
	[PF00313]
	
7

	
69

	
	
Cold-shock protein, DNA-binding

    





    

        Iprscan
        IPR011129
	[SM00357]
	
8

	
71

	
	
Cold shock protein

    





    

        Iprscan
        IPR019844
	[PS00352]
	
20

	
38

	
	
Cold-shock conserved site

    





    

        Iprscan
        IPR016027
	[SSF50249]
	
7

	
70

	
	
Nucleic acid-binding, OB-fold-like

    




Show or not Suggestions
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ID


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CL

 
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Show or not Access unfiltered results






    

       
            
                pubmed
            
        
	    
            
Set of Uniprot with relevant PubMed cross-references ncbi-blastp

        		
 	    
            193 hits
        
    

    

        
            
                swiss-prot
            
        
	    
            
Swiss-Prot ncbi-blastp

        		
 	    
            153 hits
        
    

    
    
    

        
            
                XFF4834R
            
        
    	
            
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp

        		        
        
            4 hits
        
    

        
    

        
            
                hamap
            
        
	
            
HAMAP scan

        		        
        
            0 hits
        
    

    
    

	    
            
                Interpro Scan
            
            
	        
                
IprScan

            		        
            
                10 hits
            
    








Show or not Miscellaneous analyses




    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetLocalBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBOyYv5N/XFF4834R_chr24060.xml_fasta", "https://iant.toulouse.inra.fr/bacteria/annotation/web/img/XFF4834R.png"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    
    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetNcbiBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBOyYv5N/XFF4834R_chr24060.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetUniprotBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBOyYv5N/XFF4834R_chr24060.xml_fasta"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetKeggBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBOyYv5N/XFF4834R_chr24060.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    

    






sspA XFF4834R_chr24380




    

         
             
            XFF4834R_chr24370
            
XFF4834R_chr24370
            
        		


       
           
	   Cluster
	   
DrawMap
	   
        		
	
        
            XML file
        	


	    FASTA file
        		
	
	
             
            Extract
Sequence
            
        		
	
	
             
            Codon
Usage
            
        		
    
    
            
            Framed
            
     
  	



	
            OrthoMCL
            
    
  	
    
    
    

     


	
             
            XFF4834R_chr_2589
            
XFF4834R_chr_2589
            
        		

    





    

        ID
        sspA
    

    

        AC
        XFF4834R_chr24380
    

    

        LT
        XFF4834R_chr24380
    

    

        OR
        XFF4834R_chr from 2812869 to 2813504 on strand -
    

   

        DE
        probable stringent starvation protein A
  

   

        IP
        Intracellular chloride channel; Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal-like; Glutathione S-transferase, predicted
  
  
  
  

        CL
        3.1.2.2 Activator	GO:0016563 
    

  

        EC
        
    

    
    

        GO
        
            InterPro



            Curated

        		
    


  

        PM
        
    

  

        AN
        
    

  

        CC
        COG: [O] Posttranslational modification, protein turnover, chaperones; 
    

    

        CC
        MODEL: XFF4834R 
  
    
  

        CC
        STATUS: curated by lnoel (20100521)
  

  
  


    

        MW
        23883.4 Da
    


    

        SQ
        211 aa
    

    

         
        
........10........20........30........40........50
         |         |         |         |         |
MATSVRMRNTLTLFSSNDDVLCHRVRLVLAAKGVTYDLVPVDPQNPPEDL
IDLNPYHSVPTLVERDLVLYAASVVSEYLDERYPHPPLMPVDPLSRARLR
LAMLRIEHDWVPQVQAIQLGNKTQAEAGRKRLKELLTASVPLFKASKFFL
NPEMSLADCAMAPIIWRLDALEISLPKDGKAIEDYGNRIFRNPGFIRSLT
DQEKKLRDLPG

    





Show or not Suggestions
Suggest an annotation


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ID


DE


EC


GO


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CL

 
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  Validation code (copy this one MRwBVsoR)  
 
     



Show or not Access unfiltered results






    

       
            
                pubmed
            
        
	    
            
Set of Uniprot with relevant PubMed cross-references ncbi-blastp

        		
 	    
            97 hits
        
    

    

        
            
                swiss-prot
            
        
	    
            
Swiss-Prot ncbi-blastp

        		
 	    
            35 hits
        
    

    
    
    

        
            
                XFF4834R
            
        
    	
            
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp

        		        
        
            1 hits
        
    

        
    

        
            
                hamap
            
        
	
            
HAMAP scan

        		        
        
            0 hits
        
    

    
    

	    
            
                Interpro Scan
            
            
	        
                
IprScan

            		        
            
                10 hits
            
    








Show or not Miscellaneous analyses




    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetLocalBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBOyYv5N/XFF4834R_chr24380.xml_fasta", "https://iant.toulouse.inra.fr/bacteria/annotation/web/img/XFF4834R.png"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    
    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetNcbiBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBOyYv5N/XFF4834R_chr24380.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetUniprotBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBOyYv5N/XFF4834R_chr24380.xml_fasta"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetKeggBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBOyYv5N/XFF4834R_chr24380.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    

    






cspA2 XFF4834R_chr30330




    

         
             
            XFF4834R_chr30320
            
XFF4834R_chr30320
            
        		


       
           
	   Cluster
	   
DrawMap
	   
        		
	
        
            XML file
        	


	    FASTA file
        		
	
	
             
            Extract
Sequence
            
        		
	
	
             
            Codon
Usage
            
        		
    
    
            
            Framed
            
     
  	



	
            OrthoMCL
            
    
  	
    
    
    

     


	
             
            XFF4834R_chr30340
            
XFF4834R_chr30340
            
        		

    





    

        ID
        cspA2
    

    

        AC
        XFF4834R_chr30330
    

    

        LT
        XFF4834R_chr30330
    

    

        OR
        XFF4834R_chr from 3484711 to 3484926 on strand -
    

   

        DE
        major cold shock protein A
  

   

        IP
        Cold shock protein; Cold shock, CspA; Nucleic acid-binding, OB-fold-like
  
  
  
  

        CL
        3.1.2.2 Activator	GO:0016563 
    

  

        EC
        
    

    
    

        GO
        
            InterPro
DNA-dependent (GO:0006355)
Molecular Function: nucleic acid binding (GO:0003676)
Molecular Function: DNA binding (GO:0003677)


            Curated

        		
    


  

        PM
        
    

  

        AN
        according to GenProtEC :- regulation -transcriptional -activator -- -cell process -adaptation to stress -temperature extremes-
    

  

        CC
        COG: [K] Transcription; 
    

    

        CC
        MODEL: XFF4834R 
  
    
  

        CC
        STATUS: curated by darrasse (20120403)
  

  
  


    

        MW
        7945 Da
    


    

        SQ
        71 aa
    

    

         
        
........10........20........30........40........50
         |         |         |         |         |
MSNIERENGVVKWFNDAKGFGFISRENGEDVFVHFRAIQIQGFKSLKEGQ
KVSFTVVQGQKGLQADAVQVV

    





Show or not Domain decomposition
 

    

        
            
                XFF4834R
            
                
        
XFF4834R_chr24060 lcl|XFF4834R_chr26250841_2774056_r3_XFF4834R-XFF4834R_chr24060

        
1

	
70

	
S=270 I=73 E=3.12646e-27

	

     	

   





    

        
            
                XFF4834R
            
                
        
XFF4834R_chr31640 lcl|cspD-XFF4834R_chr31640

        
7

	
71

	
S=216 I=64 E=9.4962e-21

	
cold shock protein homolog

     	

   





    

        
            
                X.species
            
                
        
YP_363253.1 lcl|cspA-XCV1522

        
1

	
71

	
S=354 I=100 E=7.54609e-37

	
major cold shock protein

     	

   





    

        
            
                X.species
            
                
        
NP_636795.1 lcl|cspA-XCC1422

        
1

	
71

	
S=354 I=100 E=7.54609e-37

	
major cold shock protein

     	

   





    

        
            
                X.species
            
                
        
NP_641799.1 lcl|cspA-XAC1465

        
1

	
71

	
S=354 I=100 E=7.54609e-37

	
major cold shock protein

     	

   





    

        
            
                X.species
            
                
        
 lcl|cspA1-XALc_1131

        
3

	
71

	
S=300 I=88 E=2.35276e-30

	
probable cold shock protein

     	

   





    

        
            
                X.species
            
                
        
NP_637642.1 lcl|cspA-XCC2287

        
5

	
71

	
S=270 I=78 E=1.24083e-26

	
major cold shock protein

     	

   





    

        
            
                X.species
            
                
        
YP_364323.1 lcl|cspA-XCV2592

        
5

	
71

	
S=264 I=75 E=6.56047e-26

	
major cold shock protein

     	

   





    

        
            
                X.species
            
                
        
NP_642711.1 lcl|cspA-XAC2395

        
5

	
71

	
S=264 I=75 E=6.56047e-26

	
major cold shock protein

     	

   





    

        
            
                X.species
            
                
        
 lcl|cspA2-XALc_1104

        
5

	
71

	
S=242 I=73 E=2.59703e-23

	
probable cold-shock protein

     	

   





    

        
            
                X.species
            
                
        
YP_363120.1 lcl|scoF-XCV1389

        
7

	
71

	
S=216 I=64 E=3.73614e-20

	
cold shock protein

     	

   





    

        
            
                X.species
            
                
        
NP_636660.1 lcl|scoF-XCC1286

        
7

	
71

	
S=216 I=64 E=3.73614e-20

	
cold shock protein

     	

   





    

        
            
                X.species
            
                
        
NP_641672.1 lcl|scoF-XAC1337

        
7

	
71

	
S=216 I=64 E=3.73614e-20

	
cold shock protein

     	

   





    

        Iprscan
        IPR002059
	[PR00050]
	
9

	
24

	
	
Cold-shock protein, DNA-binding

    





    

        Iprscan
        IPR002059
	[PR00050]
	
29

	
38

	
	
Cold-shock protein, DNA-binding

    





    

        Iprscan
        IPR002059
	[PR00050]
	
44

	
62

	
	
Cold-shock protein, DNA-binding

    





    

        Iprscan
        IPR012340
	[G3DSA:2.40.50.140]
	
6

	
71

	
	
Nucleic acid-binding, OB-fold

    





    

        Iprscan
        IPR012156
	[PIRSF002599]
	
6

	
71

	
	
Cold shock, CspA

    





    

        Iprscan
        
	[PTHR11544]
	
1

	
68

	
	
-

    





    

        Iprscan
        IPR002059
	[PF00313]
	
6

	
70

	
	
Cold-shock protein, DNA-binding

    





    

        Iprscan
        IPR011129
	[SM00357]
	
8

	
71

	
	
Cold shock protein

    





    

        Iprscan
        IPR019844
	[PS00352]
	
20

	
38

	
	
Cold-shock conserved site

    





    

        Iprscan
        IPR016027
	[SSF50249]
	
6

	
71

	
	
Nucleic acid-binding, OB-fold-like

    




Show or not Suggestions
Suggest an annotation


Move your mouse over each field to get more informations


ID


DE


EC


GO


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CL

 
  Your email  
 
  Validation code (copy this one r81pxxHr)  
 
     



Show or not Access unfiltered results






    

       
            
                pubmed
            
        
	    
            
Set of Uniprot with relevant PubMed cross-references ncbi-blastp

        		
 	    
            197 hits
        
    

    

        
            
                swiss-prot
            
        
	    
            
Swiss-Prot ncbi-blastp

        		
 	    
            153 hits
        
    

    
    
    

        
            
                XFF4834R
            
        
    	
            
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp

        		        
        
            3 hits
        
    

        
    

        
            
                hamap
            
        
	
            
HAMAP scan

        		        
        
            0 hits
        
    

    
    

	    
            
                Interpro Scan
            
            
	        
                
IprScan

            		        
            
                10 hits
            
    








Show or not Miscellaneous analyses




    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetLocalBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBOyYv5N/XFF4834R_chr30330.xml_fasta", "https://iant.toulouse.inra.fr/bacteria/annotation/web/img/XFF4834R.png"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    
    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetNcbiBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBOyYv5N/XFF4834R_chr30330.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetUniprotBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBOyYv5N/XFF4834R_chr30330.xml_fasta"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetKeggBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBOyYv5N/XFF4834R_chr30330.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    

    






XFF4834R_chr33200798_3512649_f1_XFF4834R-XFF4834R_chr30560 XFF4834R_chr30560




    

         
             
            XFF4834R_chr30550
            
XFF4834R_chr30550
            
        		


       
           
	   Cluster
	   
DrawMap
	   
        		
	
        
            XML file
        	


	    FASTA file
        		
	
	
             
            Extract
Sequence
            
        		
	
	
             
            Codon
Usage
            
        		
    
    
            
            Framed
            
     
  	



	
            OrthoMCL
            
    
  	
    
    
    

     


	
             
            XFF4834R_chr30570
            
XFF4834R_chr30570
            
        		

    





    

        ID
        XFF4834R_chr33200798_3512649_f1_XFF4834R-XFF4834R_chr30560
    

    

        AC
        XFF4834R_chr30560
    

    

        LT
        XFF4834R_chr30560
    

    

        OR
        XFF4834R_chr from 3511798 to 3512649 on strand +
    

   

        DE
        putative AraC family transcriptional regulator
  

   

        IP
        4-hydroxyphenylacetate catabolism regulatory protein hpaA; Helix-turn-helix, AraC domain
  
  
  
  

        CL
        3.1.2.2 Activator	GO:0016563 
    

  

        EC
        
    

    
    

        GO
        
            InterPro
Cellular Component: intracellular (GO:0005622)
DNA-dependent (GO:0006355)
Molecular Function: sequence-specific DNA binding (GO:0043565)
Molecular Function: transcription factor activity (GO:0003700)


            Curated

        		
    


  

        PM
        
    

  

        AN
        
    

  

        CC
        COG: [K] Transcription; 
    

    

        CC
        MODEL: XFF4834R 
  
    
  

        CC
        STATUS: curated by darrasse (20120309)
  

  
  


    

        MW
        30768.9 Da
    


    

        SQ
        283 aa
    

    

         
        
........10........20........30........40........50
         |         |         |         |         |
MSIENPPTQIDALPPGVRASFEKADGPVLIAFLAELREVWAPETAWHAHV
RGQLMYVEHGVLTVHTEQGALSLPPGCAGWMPPGQQHTVELAGPMRGWGV
VVRPDACAALPAQGGVIRLTGLAREAIMRAASWPLDQPLDATRQRLAAVL
LDELCQVQIDHLHLPMPADRRLLRIARQLLDTPADPRPLDAWANWGGLSP
RSLSRHFRDETGLSFAQWRQQARLTEGLRRLSQGHAVAQVSDQLGYSSPS
AFVSVFHRHFGAPPTRYLAGSHARGLASPAASG

    






    

        
            
                XFF4834R
            
                
        
XFF4834R_chr39300 lcl|XFF4834R_chr42520214_4528224_f1_XFF4834R-XFF4834R_chr39300

        
189

	
267

	
S=101 I=30 E=7.25407e-06

	

     	

   





    

        
            
                XFF4834R
            
                
        
XFF4834R_chr25740 lcl|XFF4834R_chr28300192_2984908_f2_XFF4834R-XFF4834R_chr25740

        
168

	
269

	
S=95 I=26 E=3.90281e-05

	

     	

   





    

        
            
                XFF4834R
            
                
        
XFF4834R_chr03390 lcl|XFF4834R_chr03510360_0390247_r3_XFF4834R-XFF4834R_chr03390

        
171

	
271

	
S=94 I=31 E=6.24955e-05

	

     	

   





    

        
            
                X.species
            
                
        
YP_363229.1 lcl|XCV1498

        
1

	
283

	
S=1410 I=96 E=8.44278e-164

	
AraC family transcriptional regulator

     	

   





    

        
            
                X.species
            
                
        
NP_641777.1 lcl|XAC1442-XAC1442

        
13

	
283

	
S=1372 I=98 E=2.82722e-159

	
transcriptional regulator

     	

   





    

        
            
                X.species
            
                
        
NP_636770.1 lcl|XCC1396

        
1

	
283

	
S=1261 I=86 E=8.1021e-146

	
transcriptional regulator

     	

   





    

        
            
                X.species
            
                
        
NP_642552.1 lcl|yeaM-XAC2235

        
47

	
270

	
S=335 I=36 E=1.21285e-33

	
AraC family transcriptional regulator

     	

   





    

        
            
                X.species
            
                
        
YP_364077.1 lcl|XCV2346

        
168

	
269

	
S=122 I=31 E=8.22898e-08

	
AraC family transcriptional regulator

     	

   





    

        
            
                X.species
            
                
        
NP_635706.1 lcl|XCC0311

        
183

	
267

	
S=112 I=35 E=1.33976e-06

	
transcriptional regulator

     	

   





    

        
            
                X.species
            
                
        
YP_364180.1 lcl|XCV2449

        
168

	
264

	
S=112 I=31 E=1.44913e-06

	
AraC family transcriptional regulator

     	

   





    

        
            
                X.species
            
                
        
NP_637718.1 lcl|adpA-XCC2364

        
158

	
264

	
S=106 I=31 E=8.43296e-06

	
AraC family transcriptional regulator

     	

   





    

        
            
                X.species
            
                
        
NP_644363.1 lcl|ftrA-XAC4064

        
189

	
267

	
S=101 I=30 E=3.20122e-05

	
transcriptional activator FtrA

     	

   





    

        
                pubmed
        
        

        
44

	
258

	
S=374 I=39 E=1.05285e-36

	
Transcriptional factor PhcT ; DNA-binding regulation

	
Pubmed 12081966

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
47

	
268

	
S=365 I=36 E=1.23072e-35

	
AraC protein ; DNA-binding Transcription regulation

	
Pubmed 12904565

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
47

	
267

	
S=289 I=32 E=1.9055e-26

	
Putative transcriptional regulator ; DNA-binding regulation

	
Pubmed 9791097,12823813

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
165

	
277

	
S=183 I=33 E=1.27321e-13

	
HTH-type transcriptional repressor of iron proteins A ; DNA-binding regulation

	
Pubmed 16179344

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
166

	
264

	
S=165 I=39 E=1.91488e-11

	
AraC-type transcriptional regulator ; DNA-binding regulation

	
Pubmed 16291687

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
184

	
266

	
S=126 I=36 E=1.20128e-06

	
HTH AraC-type regulator ; DNA-binding Transcription regulation

	
Pubmed 17564599

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
168

	
269

	
S=122 I=31 E=3.00072e-06

	
AraC family transcriptional regulator Putative transcriptional regulator, AraC family ; DNA-binding regulation

	
Pubmed 18487337,18502858

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
146

	
274

	
S=116 I=28 E=1.61444e-05

	
Arabinose operon regulatory protein ; Activator catabolism Carbohydrate metabolism Cytoplasm DNA-binding Repressor Transcription regulation

	
Pubmed 7019009,7008027

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
170

	
267

	
S=114 I=30 E=2.89546e-05

	
AgpT ; DNA-binding Plasmid Transcription regulation

	
Pubmed 10867229

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
146

	
270

	
S=113 I=29 E=3.96306e-05

	
Arabinose operon regulatory protein ; Activator catabolism Carbohydrate metabolism Cytoplasm DNA-binding Repressor Transcription regulation

	
Pubmed 2965663

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
47

	
269

	
S=302 I=33 E=3.77464e-28

	
Uncharacterized HTH-type transcriptional regulator yeaM ; DNA-binding regulation

	

    

    

         
        
prodomImg

    





    

        Iprscan
        IPR003313
	[PF02311]
	
29

	
98

	
	
AraC protein, arabinose-binding/dimerisation

    





    

        Iprscan
        IPR000005
	[PF00165]
	
175

	
220

	
	
Helix-turn-helix, AraC type

    





    

        Iprscan
        IPR000005
	[PF00165]
	
231

	
269

	
	
Helix-turn-helix, AraC type

    





    

        Iprscan
        IPR018060
	[SM00342]
	
186

	
268

	
	
Helix-turn-helix, AraC domain

    





    

        Iprscan
        IPR018060
	[PS01124]
	
170

	
270

	
	
Helix-turn-helix, AraC domain

    





    

        
            
                
            
                
        
PD275086

        
71

	
162

	
S=180 I=42 E=2.21151e-14

    	
    





    

        
            
                
            
                
        
PD714020

        
13

	
42

	
S=150 I=100 E=1.20773e-10

    	
    





    

        
            
                
            
                
        
PDA86865

        
43

	
73

	
S=149 I=90 E=1.27259e-10

    	
    





    

        
            
                
            
                
        
PD376793

        
162

	
218

	
S=136 I=53 E=5.13059e-09

    	
    





    

        
            
                
            
                
        
PD884796

        
217

	
268

	
S=135 I=46 E=7.33523e-09

    	
    





    

        
            
                
            
                
        
PDA6N2H6

        
215

	
264

	
S=109 I=42 E=8.71076e-06

    	
    





    

        
            
                
            
                
        
PDA2N018

        
223

	
269

	
S=108 I=44 E=1.28958e-05

    	
    




Show or not Suggestions
Suggest an annotation


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ID


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                pubmed
            
        
	    
            
Set of Uniprot with relevant PubMed cross-references ncbi-blastp

        		
 	    
            10 hits
        
    

    

        
            
                swiss-prot
            
        
	    
            
Swiss-Prot ncbi-blastp

        		
 	    
            10 hits
        
    

    
    
    

        
            
                XFF4834R
            
        
    	
            
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp

        		        
        
            3 hits
        
    

        
    

        
            
                hamap
            
        
	
            
HAMAP scan

        		        
        
            0 hits
        
    

    
    

	    
            
                Interpro Scan
            
            
	        
                
IprScan

            		        
            
                11 hits
            
    








Show or not Miscellaneous analyses




    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetLocalBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBOyYv5N/XFF4834R_chr30560.xml_fasta", "https://iant.toulouse.inra.fr/bacteria/annotation/web/img/XFF4834R.png"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    
    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetNcbiBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBOyYv5N/XFF4834R_chr30560.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetUniprotBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBOyYv5N/XFF4834R_chr30560.xml_fasta"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetKeggBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBOyYv5N/XFF4834R_chr30560.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    

    






XFF4834R_chr41960527_4474255_r3_XFF4834R-XFF4834R_chr38830 XFF4834R_chr38830




    

         
             
            XFF4834R_chr38820
            
XFF4834R_chr38820
            
        		


       
           
	   Cluster
	   
DrawMap
	   
        		
	
        
            XML file
        	


	    FASTA file
        		
	
	
             
            Extract
Sequence
            
        		
	
	
             
            Codon
Usage
            
        		
    
    
            
            Framed
            
     
  	



	
            OrthoMCL
            
    
  	
    
    
    

     


	
             
            XFF4834R_chr38840
            
XFF4834R_chr38840
            
        		

    





    

        ID
        XFF4834R_chr41960527_4474255_r3_XFF4834R-XFF4834R_chr38830
    

    

        AC
        XFF4834R_chr38830
    

    

        LT
        XFF4834R_chr38830
    

    

        OR
        XFF4834R_chr from 4473527 to 4474255 on strand -
    

   

        DE
        probable Type III pantothenate kinase CoaX
  

   

        IP
        Bordetella pertussis Bvg accessory factor
  
  
  
  

        CL
        3.1.2.2 Activator	GO:0016563 
    

  

        EC
        
    

    
    

        GO
        
            InterPro
Biological Process: positive regulation of transcription (GO:0045941)
Molecular Function: transcription activator activity (GO:0016563)


            Curated

        		
    


  

        PM
        
    

  

        AN
        
    

  

        CC
        COG: [K] Transcription; 
    

    

        CC
        MODEL: XFF4834R 
  
    
  

        CC
        STATUS: curated by darrasse (20120316)
  

  
  


    

        MW
        25014.3 Da
    


    

        SQ
        242 aa
    

    

         
        
........10........20........30........40........50
         |         |         |         |         |
MSEWLFDLGNSRFKYAPLHGNRAGQVQAWAHGAEAMDAAALAALPSGRIA
YVASVAAPALTQRMIACLQERFAQVRIVRTTAECAGIRIAYADPSRFGVD
RFLALLGARGDAPVLVAGVGTALTIDVLGADGLHHGGRIAASPTTMREAL
HARAVQLPASGGDYVELAIDTDDALTSGCDGAAVALIERSLQHAQRSLGV
PVRLLVHGGGAPPLLPLLPDATFRAALVLDGLATWATAASSP

    






    

        Hamap
        COAX_MF_01274
	raw_score=1476 norm_score=14.362
	
Type III pantothenate kinase [coaX].

    





    

        
            
                X.species
            
                
        
NP_644316.1 lcl|baf-XAC4017

        
1

	
242

	
S=1079 I=90 E=8.36749e-124

	
pantothenate kinase

     	

   





    

        
            
                X.species
            
                
        
YP_365840.1 lcl|XCV4109

        
1

	
242

	
S=1062 I=88 E=9.27488e-122

	
pantothenate kinase

     	

   





    

        
            
                X.species
            
                
        
NP_639276.1 lcl|baf-XCC3937

        
1

	
242

	
S=870 I=76 E=1.58966e-98

	
pantothenate kinase

     	

   





    

        
            
                X.species
            
                
        
 lcl|XALc_0252

        
1

	
238

	
S=664 I=61 E=1.5842e-73

	
putative transcriptional regulator, bvg accessory factor family transcription regulator protein

     	

   





    

        
                pubmed
        
        

        
5

	
211

	
S=160 I=29 E=5.65065e-11

	
Putative uncharacterized protein ; ATP-binding Coenzyme biosynthesis Cytoplasm Kinase Nucleotide-binding Transferase

	
Pubmed 16309397

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
54

	
210

	
S=148 I=33 E=1.66442e-09

	
Type III pantothenate kinase EC=2.7.1.33 ; ATP-binding Coenzyme biosynthesis Cytoplasm Nucleotide-binding Transferase

	
Pubmed 10417135

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
48

	
233

	
S=146 I=29 E=2.85776e-09

	
Type III pantothenate kinase EC=2.7.1.33 ; Antibiotic resistance ATP-binding Coenzyme biosynthesis Cytoplasm Metal-binding Nucleotide-binding

	
Pubmed 16905099

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
54

	
210

	
S=145 I=33 E=3.77741e-09

	
Type III pantothenate kinase EC=2.7.1.33 ; ATP-binding Coenzyme biosynthesis Cytoplasm Nucleotide-binding Transcription regulation Transferase

	
Pubmed 7601846

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
68

	
233

	
S=144 I=34 E=5.89259e-09

	
Putative uncharacterized protein ; ATP-binding Coenzyme biosynthesis Cytoplasm Kinase Nucleotide-binding Transferase

	
Pubmed 16309397

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
68

	
209

	
S=132 I=32 E=1.48359e-07

	
Type III pantothenate kinase EC=2.7.1.33 ; ATP-binding Coenzyme biosynthesis Cytoplasm Metal-binding Nucleotide-binding Transferase

	
Pubmed 18700039

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
87

	
179

	
S=123 I=33 E=2.17549e-06

	
Type III pantothenate kinase EC=2.7.1.33 ; ATP-binding Coenzyme biosynthesis Cytoplasm Metal-binding Nucleotide-binding Transferase

	
Pubmed 19008447

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
1

	
242

	
S=1079 I=90 E=2.11152e-122

	
Type III pantothenate kinase EC=2.7.1.33 ; ATP-binding Coenzyme biosynthesis Cytoplasm Nucleotide-binding Transferase

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
1

	
242

	
S=1062 I=88 E=2.34049e-120

	
Type III pantothenate kinase EC=2.7.1.33 ; ATP-binding Coenzyme biosynthesis Cytoplasm Nucleotide-binding Transferase

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
1

	
242

	
S=1012 I=87 E=2.39051e-114

	
Type III pantothenate kinase EC=2.7.1.33 ; ATP-binding Coenzyme biosynthesis Cytoplasm Nucleotide-binding Transferase

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
1

	
242

	
S=1012 I=87 E=2.39051e-114

	
Type III pantothenate kinase EC=2.7.1.33 ; ATP-binding Coenzyme biosynthesis Cytoplasm Nucleotide-binding Transferase

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
1

	
242

	
S=1012 I=87 E=2.39051e-114

	
Type III pantothenate kinase EC=2.7.1.33 ; ATP-binding Coenzyme biosynthesis Cytoplasm Nucleotide-binding Transferase

	

    

    

         
        
prodomImg

    





    

        Iprscan
        
	[MF_01274]
	
2

	
240

	
	
-

    





    

        Iprscan
        IPR004619
	[PF03309]
	
3

	
193

	
	
Bordetella pertussis Bvg accessory factor

    





    

        Iprscan
        IPR004619
	[TIGR00671]
	
3

	
237

	
	
Bordetella pertussis Bvg accessory factor

    





    

        Iprscan
        
	[seg]
	
28

	
43

	
	
-

    





    

        Iprscan
        
	[seg]
	
212

	
219

	
	
-

    





    

        
            
                
            
                
        
PDA4N1O5

        
50

	
85

	
S=175 I=97 E=9.37023e-14

    	
    





    

        
            
                
            
                
        
PD690409

        
1

	
49

	
S=170 I=65 E=4.08949e-13

    	
    




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ID


DE


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PM



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                pubmed
            
        
	    
            
Set of Uniprot with relevant PubMed cross-references ncbi-blastp

        		
 	    
            7 hits
        
    

    

        
            
                swiss-prot
            
        
	    
            
Swiss-Prot ncbi-blastp

        		
 	    
            123 hits
        
    

    
    
    

        
            
                XFF4834R
            
        
    	
            
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp

        		        
        
            0 hits
        
    

        
    

        
            
                hamap
            
        
	
            
HAMAP scan

        		        
        
            0 hits
        
    

    
    

	    
            
                Interpro Scan
            
            
	        
                
IprScan

            		        
            
                5 hits
            
    








Show or not Miscellaneous analyses




    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetLocalBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBOyYv5N/XFF4834R_chr38830.xml_fasta", "https://iant.toulouse.inra.fr/bacteria/annotation/web/img/XFF4834R.png"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    
    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetNcbiBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBOyYv5N/XFF4834R_chr38830.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetUniprotBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBOyYv5N/XFF4834R_chr38830.xml_fasta"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetKeggBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBOyYv5N/XFF4834R_chr38830.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    

    






ftrA XFF4834R_chr39300




    

         
             
            XFF4834R_chr39290
            
XFF4834R_chr39290
            
        		


       
           
	   Cluster
	   
DrawMap
	   
        		
	
        
            XML file
        	


	    FASTA file
        		
	
	
             
            Extract
Sequence
            
        		
	
	
             
            Codon
Usage
            
        		
    
    
            
            Framed
            
     
  	



	
            OrthoMCL
            
    
  	
    
    
    

     


	
             
            XFF4834R_chr39310
            
XFF4834R_chr39310
            
        		

    





    

        ID
        ftrA
    

    

        AC
        XFF4834R_chr39300
    

    

        LT
        XFF4834R_chr39300
    

    

        OR
        XFF4834R_chr from 4527214 to 4528224 on strand +
    

   

        DE
        Transcriptional activator FtrA 
  

   

        IP
        ThiJ/PfpI; Helix-turn-helix, AraC domain
  
  
  
  

        CL
        3.1.2.2 Activator	GO:0016563 
    

  

        EC
        
    

    
    

        GO
        
            InterPro
Biological Process: regulation of transcription (GO:0045449)
Cellular Component: intracellular (GO:0005622)
DNA-dependent (GO:0006355)
Molecular Function: DNA binding (GO:0003677)
Molecular Function: sequence-specific DNA binding (GO:0043565)
Molecular Function: transcription factor activity (GO:0003700)


            Curated

        		
    


  

        PM
        
    

  

        AN
        58% id with FtrA (Caulobacter crescentus)
    

  

        CC
        COG: [K] Transcription; 
    

    

        CC
        MODEL: XFF4834R 
  
    
  

        CC
        STATUS: curated by darrasse (20120316)
  

  
  


    

        MW
        36469.5 Da
    


    

        SQ
        336 aa
    

    

         
        
........10........20........30........40........50
         |         |         |         |         |
MPTSTPRARRHGLPPLVVVVAYDQLGLFEFGITTEIFGLPRPEVGPGWYR
FAIAAAEPGPLRALGGLRLEVDGGLDLLDAAHTIIVPSWRDTSASAPAAL
IKALQRAHKRKTRIVSICAGAFVLAQAGLLQGRRATTHWRNAEVLASHYP
QITVEPGVLYVDEGDILTSAGSAAGIDLCLHIVRADFGPAVANQVAKRLV
MPVHRDGGQAQFIDRPVPPIHESARLGPLLERITQDLTANHCVDALASAA
GMSRRTFLRRFQATTGMSPGKWIVNERLNRAREMLETSGADIEQIATRCG
FGSTETLRHHFRRTLALSPTQYRRVFGGHRDAGEGI

    






    

        
            
                XFF4834R
            
                
        
XFF4834R_chr22820 lcl|XFF4834R_chr24870286_2640708_r1_XFF4834R-XFF4834R_chr22820

        
243

	
322

	
S=114 I=40 E=2.40903e-07

	
predicted DNA-binding transcriptional regulator

     	

   





    

        
            
                XFF4834R
            
                
        
XFF4834R_chr25740 lcl|XFF4834R_chr28300192_2984908_f2_XFF4834R-XFF4834R_chr25740

        
225

	
327

	
S=112 I=27 E=4.35837e-07

	

     	

   





    

        
            
                XFF4834R
            
                
        
XFF4834R_chr17900 lcl|XFF4834R_chr19080421_2048329_r3_XFF4834R-XFF4834R_chr17900

        
243

	
335

	
S=102 I=27 E=8.74746e-06

	
predicted DNA-binding transcriptional regulator

     	

   





    

        
            
                XFF4834R
            
                
        
XFF4834R_chr30560 lcl|XFF4834R_chr33200798_3512649_f1_XFF4834R-XFF4834R_chr30560

        
243

	
322

	
S=101 I=30 E=9.96965e-06

	
predicted DNA-binding transcriptional regulator

     	

   





    

        
            
                XFF4834R
            
                
        
XFF4834R_chr05920 lcl|XFF4834R_chr06130827_0667771_f2_XFF4834R-XFF4834R_chr05920

        
226

	
324

	
S=98 I=31 E=2.51217e-05

	

     	

   





    

        
            
                X.species
            
                
        
NP_644363.1 lcl|ftrA-XAC4064

        
1

	
336

	
S=1639 I=94 E=0

	
transcriptional activator FtrA

     	

   





    

        
            
                X.species
            
                
        
NP_637718.1 lcl|adpA-XCC2364

        
14

	
326

	
S=563 I=40 E=4.03801e-61

	
AraC family transcriptional regulator

     	

   





    

        
            
                X.species
            
                
        
NP_638911.2 lcl|XCC3565

        
71

	
196

	
S=166 I=34 E=4.57828e-13

	
ThiJ/PfpI family protein

     	

   





    

        
            
                X.species
            
                
        
NP_635706.1 lcl|XCC0311

        
243

	
325

	
S=145 I=35 E=1.79663e-10

	
transcriptional regulator

     	

   





    

        
            
                X.species
            
                
        
YP_364077.1 lcl|XCV2346

        
243

	
322

	
S=121 I=33 E=1.53184e-07

	
AraC family transcriptional regulator

     	

   





    

        
            
                X.species
            
                
        
NP_642483.2 lcl|XAC2166-XAC2166

        
243

	
322

	
S=115 I=40 E=8.53404e-07

	
transcriptional regulator

     	

   





    

        
            
                X.species
            
                
        
YP_364180.1 lcl|XCV2449

        
243

	
324

	
S=113 I=30 E=1.40277e-06

	
AraC family transcriptional regulator

     	

   





    

        
            
                X.species
            
                
        
NP_637770.1 lcl|XCC2416

        
225

	
327

	
S=113 I=27 E=1.49105e-06

	
transcriptional regulator

     	

   





    

        
            
                X.species
            
                
        
YP_362360.1 lcl|XCV0629

        
98

	
212

	
S=112 I=35 E=1.62688e-06

	
putative secreted protein

     	

   





    

        
            
                X.species
            
                
        
YP_364480.1 lcl|XCV2749

        
225

	
327

	
S=112 I=27 E=1.64113e-06

	
AraC family transcriptional regulator

     	

   





    

        
                pubmed
        
        

        
16

	
319

	
S=632 I=43 E=6.77196e-68

	
AdpA ; DNA-binding Transcription regulation

	
Pubmed 10540289

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
17

	
328

	
S=620 I=44 E=1.84417e-66

	
Putative AraC-family transcriptional regulator ; DNA-binding regulation

	
Pubmed 11832503,15522084

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
13

	
326

	
S=560 I=40 E=3.78043e-59

	
Putative AraC-family transcription regulator Transcriptional regulator ; DNA-binding regulation

	
Pubmed 15113000,