Xanthomonas fuscans subsp. fuscans

9 hits

  1. XFF4834R_chr05200fisXFF4834R_chr05200global DNA-binding transcriptional dual regulator (factor-for-inversion stimulation protein)
  2. XFF4834R_chr09660nusGXFF4834R_chr09660transcription antitermination protein NusG
  3. XFF4834R_chr14950argPXFF4834R_chr14950DNA-binding transcriptional activator, replication initiation inhibitor
  4. XFF4834R_chr24060cspA1XFF4834R_chr24060major cold shock protein CspA
  5. XFF4834R_chr24380sspAXFF4834R_chr24380probable stringent starvation protein A
  6. XFF4834R_chr30330cspA2XFF4834R_chr30330major cold shock protein A
  7. XFF4834R_chr30560XFF4834R_chr33200798_3512649_f1_XFF4834R-XFF4834R_chr30560XFF4834R_chr30560putative AraC family transcriptional regulator
  8. XFF4834R_chr38830XFF4834R_chr41960527_4474255_r3_XFF4834R-XFF4834R_chr38830XFF4834R_chr38830probable Type III pantothenate kinase CoaX
  9. XFF4834R_chr39300ftrAXFF4834R_chr39300Transcriptional activator FtrA

fis XFF4834R_chr05200
XFF4834R_chr05190
XFF4834R_chr05190 		Cluster
DrawMap 		XML file

FASTA file 		Extract
Sequence 		Codon
Usage 		Framed OrthoMCL XFF4834R_chr05210
XFF4834R_chr05210
ID fis
AC XFF4834R_chr05200
LT XFF4834R_chr05200
OR XFF4834R_chr from 586636 to 586908 on strand -
DE global DNA-binding transcriptional dual regulator (factor-for-inversion stimulation protein)
IP DNA-binding protein Fis
CL 3.1.2.2 Activator GO:0016563
EC
GO InterPro
DNA-dependent (GO:0006355)
Molecular Function: DNA binding (GO:0003677)
Molecular Function: transcription factor activity (GO:0003700)

Curated
PM
AN
CC COG: [KL] Transcription;Replication, recombination and repair;
CC MODEL: XFF4834R
CC STATUS: curated by darrasse (20120319)
MW 10132.4 Da
SQ 90 aa
  
........10........20........30........40........50
         |         |         |         |         |
MNAAPSRPDTSRGAPKSPLREHVAQSVRRYLRDLDGSDADDVYEIVLREM
EIPLFVEVLNHCEGNQSRAAAMLGIHRATLRKKLKEYGLT

    






    

        
            
                XFF4834R
            
                
        
XFF4834R_chr01970 lcl|XFF4834R_chr02090240_0235586_f3_XFF4834R-XFF4834R_chr01970

        
49

	
89

	
S=89 I=44 E=3.90548e-05

	

     	

   





    

        
            
                XFF4834R
            
                
        
YP_362287.1 lcl|fis-XCV0556

        
1

	
90

	
S=472 I=100 E=4.03754e-51

	
DNA-binding protein Fis

     	

   





    

        
            
                XFF4834R
            
                
        
NP_640875.1 lcl|fis-XAC0522

        
1

	
90

	
S=472 I=100 E=4.03754e-51

	
DNA-binding protein Fis

     	

   





    

        
            
                XFF4834R
            
                
        
NP_635900.1 lcl|fis-XCC0508

        
1

	
90

	
S=469 I=99 E=1.0535e-50

	
DNA-binding protein Fis

     	

   





    

        
            
                XFF4834R
            
                
        
 lcl|fis-XALc_0309

        
1

	
89

	
S=424 I=91 E=2.78553e-45

	
probable dna-binding protein fis (factor-for-inversion stimulation protein)

     	

   





    

        
            
                XFF4834R
            
                
        
YP_361963.1 lcl|XCV0232

        
44

	
89

	
S=96 I=48 E=1.45064e-05

	
sigma 54-dependent response regulator

     	

   





    

        
                pubmed
        
        

        
14

	
89

	
S=218 I=50 E=1.09833e-18

	
DNA-binding protein fis ; Activator Transcription regulation

	
Pubmed 9811652

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
6

	
89

	
S=218 I=46 E=1.20888e-18

	
Fis ; Activator DNA-binding Transcription regulation

	
Pubmed 15294770

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
6

	
89

	
S=218 I=46 E=1.20888e-18

	
Fis ; Activator DNA-binding Transcription regulation

	
Pubmed 15294770

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
6

	
89

	
S=218 I=46 E=1.20888e-18

	
Fis ; Activator DNA-binding Transcription regulation

	
Pubmed 15294770

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
6

	
89

	
S=217 I=46 E=1.25178e-18

	
Fis ; Activator DNA-binding Transcription regulation

	
Pubmed 15294770

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
6

	
89

	
S=217 I=46 E=1.25178e-18

	
Fis ; Activator DNA-binding Transcription regulation

	
Pubmed 15294770

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
6

	
89

	
S=217 I=46 E=1.25178e-18

	
DNA-binding protein fis ; Activator Transcription regulation

	
Pubmed 9811652

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
6

	
89

	
S=217 I=46 E=1.25178e-18

	
DNA-binding protein fis ; Activator Transcription regulation

	
Pubmed 7536730

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
6

	
89

	
S=217 I=46 E=1.25178e-18

	
DNA-binding protein fis ; Activator Transcription regulation

	
Pubmed 2835774,2837762

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
6

	
89

	
S=216 I=46 E=1.77414e-18

	
DNA-binding protein fis ; Activator Transcription regulation

	
Pubmed 9811652

    

    

         
        
prodomImg

    





    

        
            
                sp_Pdown
            
        
        
sp|Q8PQ10|FISL_XANAC

        
1

	
90

	
S=472 I=100 E=1.05004e-49

	
Putative fis-like DNA-binding protein

    





    

        
            
                sp_Pdown
            
        
        
sp|Q8PD37|FISL_XANCP

        
1

	
90

	
S=469 I=99 E=2.73983e-49

	
Putative fis-like DNA-binding protein

    





    

        
            
                sp_Pdown
            
        
        
sp|Q87D75|FISL_XYLFT

        
1

	
90

	
S=412 I=84 E=2.20957e-42

	
Putative fis-like DNA-binding protein

    





    

        
            
                sp_Pdown
            
        
        
sp|Q9PBY7|FISL_XYLFA

        
1

	
90

	
S=403 I=82 E=2.76946e-41

	
Putative fis-like DNA-binding protein

    





    

        
            
                sp_Pdown
            
        
        
sp|Q65V72|FIS_MANSM

        
18

	
89

	
S=226 I=56 E=7.6802e-20

	
DNA-binding protein fis ; Activator Transcription regulation

    





    

        Iprscan
        
	[G3DSA:1.10.1680.10]
	
5

	
90

	
	
-

    





    

        Iprscan
        IPR005412
	[PIRSF002097]
	
1

	
90

	
	
DNA-binding protein Fis

    





    

        Iprscan
        IPR002197
	[PF02954]
	
47

	
87

	
	
Helix-turn-helix, Fis-type

    





    

        
            
                
            
                
        
PD362379

        
1

	
46

	
S=223 I=93 E=1.54032e-19

    	
    





    

        
            
                
            
                
        
PD947233

        
23

	
83

	
S=135 I=43 E=7.4667e-09

    	
    




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                pubmed
            
        
	    
            
Set of Uniprot with relevant PubMed cross-references ncbi-blastp

        		
 	    
            24 hits
        
    

    

        
            
                swiss-prot
            
        
	    
            
Swiss-Prot ncbi-blastp

        		
 	    
            121 hits
        
    

    
    
    

        
            
                XFF4834R
            
        
    	
            
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp

        		        
        
            1 hits
        
    

        
    

        
            
                hamap
            
        
	
            
HAMAP scan

        		        
        
            0 hits
        
    

    
    

	    
            
                Interpro Scan
            
            
	        
                
IprScan

            		        
            
                9 hits
            
    








Show or not Miscellaneous analyses




    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetLocalBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBkVGRw7/XFF4834R_chr05200.xml_fasta", "https://iant.toulouse.inra.fr/bacteria/annotation/web/img/XFF4834R.png"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    
    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetNcbiBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBkVGRw7/XFF4834R_chr05200.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetUniprotBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBkVGRw7/XFF4834R_chr05200.xml_fasta"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetKeggBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBkVGRw7/XFF4834R_chr05200.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    

    






nusG XFF4834R_chr09660




    

         
             
            XFF4834R_chr09650
            
XFF4834R_chr09650
            
        		


       
           
	   Cluster
	   
DrawMap
	   
        		
	
        
            XML file
        	


	    FASTA file
        		
	
	
             
            Extract
Sequence
            
        		
	
	
             
            Codon
Usage
            
        		
    
    
            
            Framed
            
     
  	



	
            OrthoMCL
            
    
  	
    
    
    

     


	
             
            XFF4834R_chr09670
            
XFF4834R_chr09670
            
        		

    





    

        ID
        nusG
    

    

        AC
        XFF4834R_chr09660
    

    

        LT
        XFF4834R_chr09660
    

    

        OR
        XFF4834R_chr from 1102916 to 1103473 on strand +
    

   

        DE
        transcription antitermination protein NusG
  

   

        IP
        Transcription antitermination protein, NusG; Ribosomal protein L26e, archaeal
  
  
  
  

        CL
        3.1.2.2 Activator	GO:0016563 
    

  

        EC
        
    

    
    

        GO
        
            InterPro
Biological Process: positive regulation of RNA elongation from RNA polymerase II promoter (GO:0032968)
DNA-dependent (GO:0006355)
Molecular Function: transcription elongation regulator activity (GO:0003711)


            Curated

        		
    


  

        PM
        
    

  

        AN
        
    

  

        CC
        COG: [K] Transcription; 
    

    

        CC
        MODEL: XFF4834R 
  
    
  

        CC
        STATUS: curated by darrasse (20120314)
  

  
  


    

        MW
        21190 Da
    


    

        SQ
        185 aa
    

    

         
        
........10........20........30........40........50
         |         |         |         |         |
MKRWYVVHAYSGFEKSVAQALRDRIARAEMEDRFGDVLVPTEEVIEMRAG
QKRRSERKFFPGYVLVQIETHEEAGIPRIDNESWHLVKETSKVMGFIGGT
ADRPLPIRDEEADAILQRVQDGVEKPRPKVLFEPGQMVRVTEGPFNDFNG
VVEEVNYEKSRLRVAVLIFGRSTPVELEFGQVEKG

    





Show or not Domain decomposition
 

    

        
            
                XFF4834R
            
                
        
NP_641307.1 lcl|nusG-XAC0960

        
1

	
185

	
S=955 I=99 E=5.53506e-109

	
transcription antitermination protein NusG

     	

   





    

        
            
                XFF4834R
            
                
        
YP_362717.1 lcl|nusG-XCV0986

        
1

	
185

	
S=953 I=99 E=9.84083e-109

	
transcription antitermination protein NusG

     	

   





    

        
            
                XFF4834R
            
                
        
NP_636269.1 lcl|nusG-XCC0883

        
1

	
185

	
S=936 I=97 E=1.0352e-106

	
transcription antitermination protein NusG

     	

   





    

        
            
                XFF4834R
            
                
        
 lcl|nusG-XALc_0502

        
1

	
185

	
S=911 I=94 E=1.17689e-103

	
probable transcription antitermination protein nusg

     	

   





    

        Iprscan
        IPR001062
	[PR00338]
	
56

	
68

	
	
Transcription antitermination protein, NusG

    





    

        Iprscan
        IPR001062
	[PR00338]
	
143

	
158

	
	
Transcription antitermination protein, NusG

    





    

        Iprscan
        IPR001062
	[PR00338]
	
161

	
177

	
	
Transcription antitermination protein, NusG

    





    

        Iprscan
        IPR006645
	[G3DSA:3.30.70.940]
	
1

	
123

	
	
Transcription antitermination protein, NusG, N-terminal

    





    

        Iprscan
        IPR014722
	[G3DSA:2.30.30.30]
	
123

	
185

	
	
Translation protein SH3-like, subgroup

    





    

        Iprscan
        IPR006645
	[PF02357]
	
2

	
110

	
	
Transcription antitermination protein, NusG, N-terminal

    





    

        Iprscan
        IPR005824
	[PF00467]
	
134

	
164

	
	
KOW

    





    

        Iprscan
        IPR006645
	[SM00738]
	
1

	
119

	
	
Transcription antitermination protein, NusG, N-terminal

    





    

        Iprscan
        IPR005824
	[SM00739]
	
131

	
158

	
	
KOW

    





    

        Iprscan
        IPR001062
	[TIGR00922]
	
4

	
185

	
	
Transcription antitermination protein, NusG

    





    

        Iprscan
        IPR015869
	[PS01014]
	
168

	
177

	
	
Transcription antitermination protein, NusG, bacteria, conserved site

    





    

        Iprscan
        IPR006645
	[SSF82679]
	
1

	
122

	
	
Transcription antitermination protein, NusG, N-terminal

    





    

        Iprscan
        IPR008991
	[SSF50104]
	
128

	
185

	
	
Translation protein SH3-like

    




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Suggest an annotation


Move your mouse over each field to get more informations


ID


DE


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CL

 
  Your email  
 
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Show or not Access unfiltered results






    

       
            
                pubmed
            
        
	    
            
Set of Uniprot with relevant PubMed cross-references ncbi-blastp

        		
 	    
            26 hits
        
    

    

        
            
                swiss-prot
            
        
	    
            
Swiss-Prot ncbi-blastp

        		
 	    
            64 hits
        
    

    
    
    

        
            
                XFF4834R
            
        
    	
            
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp

        		        
        
            0 hits
        
    

        
    

        
            
                hamap
            
        
	
            
HAMAP scan

        		        
        
            0 hits
        
    

    
    

	    
            
                Interpro Scan
            
            
	        
                
IprScan

            		        
            
                13 hits
            
    








Show or not Miscellaneous analyses




    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetLocalBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBkVGRw7/XFF4834R_chr09660.xml_fasta", "https://iant.toulouse.inra.fr/bacteria/annotation/web/img/XFF4834R.png"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    
    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetNcbiBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBkVGRw7/XFF4834R_chr09660.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetUniprotBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBkVGRw7/XFF4834R_chr09660.xml_fasta"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetKeggBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBkVGRw7/XFF4834R_chr09660.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    

    






argP XFF4834R_chr14950




    

         
             
            XFF4834R_chr14940
            
XFF4834R_chr14940
            
        		


       
           
	   Cluster
	   
DrawMap
	   
        		
	
        
            XML file
        	


	    FASTA file
        		
	
	
             
            Extract
Sequence
            
        		
	
	
             
            Codon
Usage
            
        		
    
    
            
            Framed
            
     
  	



	
            OrthoMCL
            
    
  	
    
    
    

     


	
             
            XFF4834R_chr14960
            
XFF4834R_chr14960
            
        		

    





    

        ID
        argP
    

    

        AC
        XFF4834R_chr14950
    

    

        LT
        XFF4834R_chr14950
    

    

        OR
        XFF4834R_chr from 1714621 to 1715523 on strand -
    

   

        DE
        DNA-binding transcriptional activator, replication initiation inhibitor
  

   

        IP
        Bacterial regulatory protein, LysR; LysR, substrate-binding
  
  
  
  

        CL
        3.1.2.2 Activator	GO:0016563 
    

  

        EC
        
    

    
    

        GO
        
            InterPro
DNA-dependent (GO:0006355)
Molecular Function: transcription factor activity (GO:0003700)


            Curated

        		
    


  

        PM
        
    

  

        AN
        
    

  

        CC
        COG: [K] Transcription; 
    

    

        CC
        MODEL: XFF4834R 
  
    
  

        CC
        STATUS: validated by darrasse (20120314)
  

  
  


    

        MW
        32673.4 Da
    


    

        SQ
        300 aa
    

    

         
        
........10........20........30........40........50
         |         |         |         |         |
MDLLHPQLAAFAAVLEEGSFDAAAQRLALTPSAISQRIKALEDRLGQVLV
MRTAPCRPTPAGERLLRRLKPMQVLEAEAVADFLPADGIAGHPRTLAIAV
NDDSLQTWFLQALSSLHRAHGFLFDVQMDDQDHTLELLRAGSVLGAVTSE
RASLQGCNVQALGVMRYHAIASAAFVAAHFQGGFTAHALGKAPMLVFNRK
DTLQARFVRRITRTRLTPPTHYLPTSTGFVEAAARGLGWCLAPEAMVLPA
VRNKQVVIIDPTRWLDVPLYWQYAAVRSNALQQLSQALCKAAATSLRGSR

    






    

        
            
                XFF4834R
            
                
        
XFF4834R_chr06800 lcl|XFF4834R_chr07150040_0780948_f1_XFF4834R-XFF4834R_chr06800

        
1

	
120

	
S=103 I=34 E=4.60048e-06

	
predicted DNA-binding transcriptional regulator

     	

   





    

        
            
                XFF4834R
            
                
        
XFF4834R_chr41800 lcl|XFF4834R_chr_4862828_4863730_r3_XFF4834R-XFF4834R_chr41800

        
7

	
71

	
S=101 I=47 E=9.08135e-06

	
predicted DNA-binding transcriptional regulator

     	

   





    

        
            
                XFF4834R
            
                
        
XFF4834R_chr29860 lcl|XFF4834R_chr32430654_3431766_f1_XFF4834R-XFF4834R_chr29860

        
7

	
120

	
S=101 I=32 E=9.82266e-06

	

     	

   





    

        
            
                XFF4834R
            
                
        
XFF4834R_chr37280 lcl|XFF4834R_chr40410318_4311265_r3_XFF4834R-XFF4834R_chr37280

        
8

	
83

	
S=99 I=39 E=1.58667e-05

	

     	

   





    

        
            
                XFF4834R
            
                
        
XFF4834R_chr05050 lcl|XFF4834R_chr05180587_0570588_r1_XFF4834R-XFF4834R_chr05050

        
7

	
66

	
S=96 I=44 E=3.2151e-05

	

     	

   





    

        
            
                XFF4834R
            
                
        
XFF4834R_chr11880 lcl|XFF4834R_chr12460277_1335161_r2_XFF4834R-XFF4834R_chr11880

        
1

	
76

	
S=95 I=41 E=4.4391e-05

	

     	

   





    

        
            
                XFF4834R
            
                
        
XFF4834R_chr30170 lcl|XFF4834R_chr32750197_3468231_f1_XFF4834R-XFF4834R_chr30170

        
11

	
53

	
S=94 I=47 E=6.07587e-05

	

     	

   





    

        
            
                XFF4834R
            
                
        
XFF4834R_chr27640 lcl|XFF4834R_chr30210469_3191413_r3_XFF4834R-XFF4834R_chr27640

        
13

	
67

	
S=93 I=46 E=8.76278e-05

	
predicted DNA-binding transcriptional regulator

     	

   





    

        
            
                XFF4834R
            
                
        
YP_364995.1 lcl|iciA-XCV3264

        
1

	
300

	
S=1369 I=88 E=8.33844e-159

	
chromosome replication initiation inhibitor protein

     	

   





    

        
            
                XFF4834R
            
                
        
NP_643443.1 lcl|XAC3134-XAC3134

        
1

	
300

	
S=1360 I=89 E=9.25039e-158

	
chromosome replication initiation inhibitor protein

     	

   





    

        
            
                XFF4834R
            
                
        
NP_638303.1 lcl|XCC2955

        
1

	
297

	
S=1109 I=72 E=2.23396e-127

	
chromosome replication initiation inhibitor protein

     	

   





    

        
            
                XFF4834R
            
                
        
NP_640658.1 lcl|XAC0302-XAC0302

        
7

	
71

	
S=116 I=44 E=5.04822e-07

	
LysR family transcriptional regulator

     	

   





    

        
            
                XFF4834R
            
                
        
NP_635680.1 lcl|XCC0285

        
7

	
71

	
S=115 I=44 E=6.55743e-07

	
LysR family transcriptional regulator

     	

   





    

        
            
                XFF4834R
            
                
        
YP_364731.1 lcl|XCV3000

        
7

	
83

	
S=112 I=41 E=1.46249e-06

	
LysR family transcriptional regulator

     	

   





    

        
            
                XFF4834R
            
                
        
NP_636853.1 lcl|oxyR-XCC1481

        
7

	
120

	
S=109 I=32 E=3.12261e-06

	
hydrogen peroxide-inducible genes activator protein

     	

   





    

        
            
                XFF4834R
            
                
        
YP_362463.1 lcl|XCV0732

        
1

	
120

	
S=108 I=34 E=4.87113e-06

	
LysR family transcriptional regulator

     	

   





    

        
            
                XFF4834R
            
                
        
NP_641024.1 lcl|XAC0671-XAC0671

        
1

	
120

	
S=108 I=34 E=5.08817e-06

	
transcriptional regulator

     	

   





    

        
            
                XFF4834R
            
                
        
YP_363303.1 lcl|XCV1572

        
7

	
120

	
S=105 I=33 E=1.22744e-05

	
LysR family transcriptional regulator

     	

   





    

        
                pubmed
        
        

        
7

	
272

	
S=494 I=41 E=3.27761e-51

	
Transcriptional regulator ; DNA-binding regulation

	
Pubmed 16707707

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
4

	
297

	
S=441 I=37 E=7.21029e-45

	
Lysine export transcriptional regulatory protein lysG ; DNA-binding regulation

	
Pubmed 8971704

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
8

	
297

	
S=418 I=35 E=4.49152e-42

	
Chromosome initiation inhibitor ; DNA-binding Transcription regulation

	
Pubmed 9286976

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
8

	
297

	
S=382 I=33 E=1.2095e-37

	
Chromosome initiation inhibitor ; DNA-binding Transcription regulation

	
Pubmed 2034653

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
8

	
297

	
S=370 I=34 E=3.41064e-36

	
Chromosome initiation inhibitor ; DNA-binding Transcription regulation

	
Pubmed 12542086

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
14

	
288

	
S=284 I=28 E=8.44874e-26

	
Putative uncharacterized protein ; DNA-binding Transcription regulation

	
Pubmed 11401961

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
7

	
151

	
S=133 I=35 E=1.80827e-07

	
Nitrogen assimilation transcriptional activator NtcB protein ; DNA-binding regulation

	
Pubmed 8990301,11069684

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
7

	
94

	
S=127 I=44 E=8.24356e-07

	
Probable HTH-type transcriptional regulator lrrA ; DNA-binding regulation

	
Pubmed 8661945

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
7

	
70

	
S=124 I=48 E=1.80676e-06

	
Probable nitrogen assimilation transcriptional activator ; DNA-binding regulation

	
Pubmed 7814317

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
8

	
66

	
S=117 I=47 E=1.4266e-05

	
Putative transcriptional regulator ; DNA-binding regulation

	
Pubmed 12055289

    

    

         
        
prodomImg

    





    

        Iprscan
        IPR011991
	[G3DSA:1.10.10.10]
	
3

	
88

	
	
Winged helix repressor DNA-binding

    





    

        Iprscan
        IPR000847
	[PF00126]
	
7

	
63

	
	
HTH transcriptional regulator, LysR

    





    

        Iprscan
        IPR005119
	[PF03466]
	
89

	
297

	
	
LysR, substrate-binding

    





    

        Iprscan
        IPR017685
	[TIGR03298]
	
3

	
296

	
	
Transcriptional regulator, ArgP

    





    

        Iprscan
        IPR000847
	[PS50931]
	
1

	
59

	
	
HTH transcriptional regulator, LysR

    





    

        Iprscan
        
	[seg]
	
169

	
178

	
	
-

    





    

        Iprscan
        
	[seg]
	
209

	
220

	
	
-

    





    

        
            
                
            
                
        
PD013561

        
93

	
208

	
S=276 I=50 E=4.98618e-26

    	
    





    

        
            
                
            
                
        
PDA1X6I1

        
55

	
95

	
S=205 I=93 E=2.16165e-17

    	
    





    

        
            
                
            
                
        
PDA1G3B9

        
221

	
292

	
S=181 I=43 E=1.71889e-14

    	
    





    

        
            
                
            
                
        
PD862041

        
8

	
46

	
S=110 I=56 E=7.25951e-06

    	
    




Show or not Suggestions
Suggest an annotation


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ID


DE


EC


GO


PM



CC


CL

 
  Your email  
 
  Validation code (copy this one XV2kJzFv)  
 
     



Show or not Access unfiltered results






    

       
            
                pubmed
            
        
	    
            
Set of Uniprot with relevant PubMed cross-references ncbi-blastp

        		
 	    
            19 hits
        
    

    

        
            
                swiss-prot
            
        
	    
            
Swiss-Prot ncbi-blastp

        		
 	    
            90 hits
        
    

    
    
    

        
            
                XFF4834R
            
        
    	
            
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp

        		        
        
            9 hits
        
    

        
    

        
            
                hamap
            
        
	
            
HAMAP scan

        		        
        
            0 hits
        
    

    
    

	    
            
                Interpro Scan
            
            
	        
                
IprScan

            		        
            
                9 hits
            
    








Show or not Miscellaneous analyses




    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetLocalBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBkVGRw7/XFF4834R_chr14950.xml_fasta", "https://iant.toulouse.inra.fr/bacteria/annotation/web/img/XFF4834R.png"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    
    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetNcbiBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBkVGRw7/XFF4834R_chr14950.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetUniprotBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBkVGRw7/XFF4834R_chr14950.xml_fasta"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetKeggBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBkVGRw7/XFF4834R_chr14950.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    

    






cspA1 XFF4834R_chr24060




    

         
             
            XFF4834R_chr24050
            
XFF4834R_chr24050
            
        		


       
           
	   Cluster
	   
DrawMap
	   
        		
	
        
            XML file
        	


	    FASTA file
        		
	
	
             
            Extract
Sequence
            
        		
	
	
             
            Codon
Usage
            
        		
    
    
            
            Framed
            
     
  	



	
            OrthoMCL
            
    
  	
    
    
    

     


	
             
            XFF4834R_chr24070
            
XFF4834R_chr24070
            
        		

    





    

        ID
        cspA1
    

    

        AC
        XFF4834R_chr24060
    

    

        LT
        XFF4834R_chr24060
    

    

        OR
        XFF4834R_chr from 2773841 to 2774056 on strand -
    

   

        DE
        major cold shock protein CspA
  

   

        IP
        Cold shock, CspA; Nucleic acid-binding, OB-fold-like
  
  
  
  

        CL
        3.1.2.2 Activator	GO:0016563 
    

  

        EC
        
    

    
    

        GO
        
            InterPro
DNA-dependent (GO:0006355)
Molecular Function: nucleic acid binding (GO:0003676)
Molecular Function: DNA binding (GO:0003677)


            Curated

        		
    


  

        PM
        
    

  

        AN
        according to GenProtEC :- regulation -transcriptional -activator -- -cell process -adaptation to stress -temperature extremes-
    

  

        CC
        COG: [K] Transcription; 
    

    

        CC
        MODEL: XFF4834R 
  
    
  

        CC
        STATUS: curated by darrasse (20120403)
  

  
  


    

        MW
        7649.6 Da
    


    

        SQ
        71 aa
    

    

         
        
........10........20........30........40........50
         |         |         |         |         |
MSDASRQSGVVKWFNDAKGFGFITPESGPDLFVHFRAIQGTGFKSLQEGQ
KVTFVAVQGQKGMQADQVQAG

    





Show or not Domain decomposition
 

    

        
            
                XFF4834R
            
                
        
XFF4834R_chr30330 lcl|XFF4834R_chr32940711_3484926_r1_XFF4834R-XFF4834R_chr30330

        
1

	
70

	
S=270 I=73 E=3.12646e-27

	

     	

   





    

        
            
                XFF4834R
            
                
        
XFF4834R_chr31640 lcl|cspD-XFF4834R_chr31640

        
8

	
68

	
S=200 I=61 E=7.8942e-19

	
cold shock protein homolog

     	

   





    

        
            
                XFF4834R
            
                
        
XFF4834R_chr23370 lcl|XFF4834R_chr25540883_2704497_f1_XFF4834R-XFF4834R_chr23370

        
6

	
69

	
S=85 I=37 E=8.36609e-05

	

     	

   





    

        
            
                XFF4834R
            
                
        
YP_364323.1 lcl|cspA-XCV2592

        
4

	
70

	
S=328 I=96 E=9.77753e-34

	
major cold shock protein

     	

   





    

        
            
                XFF4834R
            
                
        
NP_642711.1 lcl|cspA-XAC2395

        
4

	
70

	
S=328 I=96 E=9.77753e-34

	
major cold shock protein

     	

   





    

        
            
                XFF4834R
            
                
        
NP_637642.1 lcl|cspA-XCC2287

        
1

	
70

	
S=327 I=94 E=1.46019e-33

	
major cold shock protein

     	

   





    

        
            
                XFF4834R
            
                
        
 lcl|cspA2-XALc_1104

        
6

	
69

	
S=284 I=87 E=2.32845e-28

	
probable cold-shock protein

     	

   





    

        
            
                XFF4834R
            
                
        
YP_363253.1 lcl|cspA-XCV1522

        
1

	
70

	
S=270 I=73 E=1.23006e-26

	
major cold shock protein

     	

   





    

        
            
                XFF4834R
            
                
        
NP_636795.1 lcl|cspA-XCC1422

        
1

	
70

	
S=270 I=73 E=1.23006e-26

	
major cold shock protein

     	

   





    

        
            
                XFF4834R
            
                
        
NP_641799.1 lcl|cspA-XAC1465

        
1

	
70

	
S=270 I=73 E=1.23006e-26

	
major cold shock protein

     	

   





    

        
            
                XFF4834R
            
                
        
 lcl|cspA1-XALc_1131

        
1

	
69

	
S=254 I=70 E=1.10602e-24

	
probable cold shock protein

     	

   





    

        
            
                XFF4834R
            
                
        
YP_363120.1 lcl|scoF-XCV1389

        
8

	
68

	
S=200 I=61 E=3.10585e-18

	
cold shock protein

     	

   





    

        
            
                XFF4834R
            
                
        
NP_636660.1 lcl|scoF-XCC1286

        
8

	
68

	
S=200 I=61 E=3.10585e-18

	
cold shock protein

     	

   





    

        
            
                XFF4834R
            
                
        
NP_641672.1 lcl|scoF-XAC1337

        
8

	
68

	
S=200 I=61 E=3.10585e-18

	
cold shock protein

     	

   





    

        Iprscan
        IPR002059
	[PR00050]
	
9

	
24

	
	
Cold-shock protein, DNA-binding

    





    

        Iprscan
        IPR002059
	[PR00050]
	
29

	
38

	
	
Cold-shock protein, DNA-binding

    





    

        Iprscan
        IPR002059
	[PR00050]
	
44

	
62

	
	
Cold-shock protein, DNA-binding

    





    

        Iprscan
        IPR012340
	[G3DSA:2.40.50.140]
	
6

	
71

	
	
Nucleic acid-binding, OB-fold

    





    

        Iprscan
        IPR012156
	[PIRSF002599]
	
6

	
71

	
	
Cold shock, CspA

    





    

        Iprscan
        
	[PTHR11544]
	
6

	
68

	
	
-

    





    

        Iprscan
        IPR002059
	[PF00313]
	
7

	
69

	
	
Cold-shock protein, DNA-binding

    





    

        Iprscan
        IPR011129
	[SM00357]
	
8

	
71

	
	
Cold shock protein

    





    

        Iprscan
        IPR019844
	[PS00352]
	
20

	
38

	
	
Cold-shock conserved site

    





    

        Iprscan
        IPR016027
	[SSF50249]
	
7

	
70

	
	
Nucleic acid-binding, OB-fold-like

    




Show or not Suggestions
Suggest an annotation


Move your mouse over each field to get more informations


ID


DE


EC


GO


PM



CC


CL

 
  Your email  
 
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Show or not Access unfiltered results






    

       
            
                pubmed
            
        
	    
            
Set of Uniprot with relevant PubMed cross-references ncbi-blastp

        		
 	    
            193 hits
        
    

    

        
            
                swiss-prot
            
        
	    
            
Swiss-Prot ncbi-blastp

        		
 	    
            153 hits
        
    

    
    
    

        
            
                XFF4834R
            
        
    	
            
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp

        		        
        
            4 hits
        
    

        
    

        
            
                hamap
            
        
	
            
HAMAP scan

        		        
        
            0 hits
        
    

    
    

	    
            
                Interpro Scan
            
            
	        
                
IprScan

            		        
            
                10 hits
            
    








Show or not Miscellaneous analyses




    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetLocalBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBkVGRw7/XFF4834R_chr24060.xml_fasta", "https://iant.toulouse.inra.fr/bacteria/annotation/web/img/XFF4834R.png"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    
    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetNcbiBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBkVGRw7/XFF4834R_chr24060.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetUniprotBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBkVGRw7/XFF4834R_chr24060.xml_fasta"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetKeggBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBkVGRw7/XFF4834R_chr24060.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    

    






sspA XFF4834R_chr24380




    

         
             
            XFF4834R_chr24370
            
XFF4834R_chr24370
            
        		


       
           
	   Cluster
	   
DrawMap
	   
        		
	
        
            XML file
        	


	    FASTA file
        		
	
	
             
            Extract
Sequence
            
        		
	
	
             
            Codon
Usage
            
        		
    
    
            
            Framed
            
     
  	



	
            OrthoMCL
            
    
  	
    
    
    

     


	
             
            XFF4834R_chr_2589
            
XFF4834R_chr_2589
            
        		

    





    

        ID
        sspA
    

    

        AC
        XFF4834R_chr24380
    

    

        LT
        XFF4834R_chr24380
    

    

        OR
        XFF4834R_chr from 2812869 to 2813504 on strand -
    

   

        DE
        probable stringent starvation protein A
  

   

        IP
        Intracellular chloride channel; Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal-like; Glutathione S-transferase, predicted
  
  
  
  

        CL
        3.1.2.2 Activator	GO:0016563 
    

  

        EC
        
    

    
    

        GO
        
            InterPro



            Curated

        		
    


  

        PM
        
    

  

        AN
        
    

  

        CC
        COG: [O] Posttranslational modification, protein turnover, chaperones; 
    

    

        CC
        MODEL: XFF4834R 
  
    
  

        CC
        STATUS: curated by lnoel (20100521)
  

  
  


    

        MW
        23883.4 Da
    


    

        SQ
        211 aa
    

    

         
        
........10........20........30........40........50
         |         |         |         |         |
MATSVRMRNTLTLFSSNDDVLCHRVRLVLAAKGVTYDLVPVDPQNPPEDL
IDLNPYHSVPTLVERDLVLYAASVVSEYLDERYPHPPLMPVDPLSRARLR
LAMLRIEHDWVPQVQAIQLGNKTQAEAGRKRLKELLTASVPLFKASKFFL
NPEMSLADCAMAPIIWRLDALEISLPKDGKAIEDYGNRIFRNPGFIRSLT
DQEKKLRDLPG

    





Show or not Suggestions
Suggest an annotation


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ID


DE


EC


GO


PM



CC


CL

 
  Your email  
 
  Validation code (copy this one BJ4CAgdE)  
 
     



Show or not Access unfiltered results






    

       
            
                pubmed
            
        
	    
            
Set of Uniprot with relevant PubMed cross-references ncbi-blastp

        		
 	    
            97 hits
        
    

    

        
            
                swiss-prot
            
        
	    
            
Swiss-Prot ncbi-blastp

        		
 	    
            35 hits
        
    

    
    
    

        
            
                XFF4834R
            
        
    	
            
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp

        		        
        
            1 hits
        
    

        
    

        
            
                hamap
            
        
	
            
HAMAP scan

        		        
        
            0 hits
        
    

    
    

	    
            
                Interpro Scan
            
            
	        
                
IprScan

            		        
            
                10 hits
            
    








Show or not Miscellaneous analyses




    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetLocalBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBkVGRw7/XFF4834R_chr24380.xml_fasta", "https://iant.toulouse.inra.fr/bacteria/annotation/web/img/XFF4834R.png"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    
    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetNcbiBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBkVGRw7/XFF4834R_chr24380.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetUniprotBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBkVGRw7/XFF4834R_chr24380.xml_fasta"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetKeggBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBkVGRw7/XFF4834R_chr24380.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    

    






cspA2 XFF4834R_chr30330




    

         
             
            XFF4834R_chr30320
            
XFF4834R_chr30320
            
        		


       
           
	   Cluster
	   
DrawMap
	   
        		
	
        
            XML file
        	


	    FASTA file
        		
	
	
             
            Extract
Sequence
            
        		
	
	
             
            Codon
Usage
            
        		
    
    
            
            Framed
            
     
  	



	
            OrthoMCL
            
    
  	
    
    
    

     


	
             
            XFF4834R_chr30340
            
XFF4834R_chr30340
            
        		

    





    

        ID
        cspA2
    

    

        AC
        XFF4834R_chr30330
    

    

        LT
        XFF4834R_chr30330
    

    

        OR
        XFF4834R_chr from 3484711 to 3484926 on strand -
    

   

        DE
        major cold shock protein A
  

   

        IP
        Cold shock protein; Cold shock, CspA; Nucleic acid-binding, OB-fold-like
  
  
  
  

        CL
        3.1.2.2 Activator	GO:0016563 
    

  

        EC
        
    

    
    

        GO
        
            InterPro
DNA-dependent (GO:0006355)
Molecular Function: nucleic acid binding (GO:0003676)
Molecular Function: DNA binding (GO:0003677)


            Curated

        		
    


  

        PM
        
    

  

        AN
        according to GenProtEC :- regulation -transcriptional -activator -- -cell process -adaptation to stress -temperature extremes-
    

  

        CC
        COG: [K] Transcription; 
    

    

        CC
        MODEL: XFF4834R 
  
    
  

        CC
        STATUS: curated by darrasse (20120403)
  

  
  


    

        MW
        7945 Da
    


    

        SQ
        71 aa
    

    

         
        
........10........20........30........40........50
         |         |         |         |         |
MSNIERENGVVKWFNDAKGFGFISRENGEDVFVHFRAIQIQGFKSLKEGQ
KVSFTVVQGQKGLQADAVQVV

    





Show or not Domain decomposition
 

    

        
            
                XFF4834R
            
                
        
XFF4834R_chr24060 lcl|XFF4834R_chr26250841_2774056_r3_XFF4834R-XFF4834R_chr24060

        
1

	
70

	
S=270 I=73 E=3.12646e-27

	

     	

   





    

        
            
                XFF4834R
            
                
        
XFF4834R_chr31640 lcl|cspD-XFF4834R_chr31640

        
7

	
71

	
S=216 I=64 E=9.4962e-21

	
cold shock protein homolog

     	

   





    

        
            
                XFF4834R
            
                
        
YP_363253.1 lcl|cspA-XCV1522

        
1

	
71

	
S=354 I=100 E=7.54609e-37

	
major cold shock protein

     	

   





    

        
            
                XFF4834R
            
                
        
NP_636795.1 lcl|cspA-XCC1422

        
1

	
71

	
S=354 I=100 E=7.54609e-37

	
major cold shock protein

     	

   





    

        
            
                XFF4834R
            
                
        
NP_641799.1 lcl|cspA-XAC1465

        
1

	
71

	
S=354 I=100 E=7.54609e-37

	
major cold shock protein

     	

   





    

        
            
                XFF4834R
            
                
        
 lcl|cspA1-XALc_1131

        
3

	
71

	
S=300 I=88 E=2.35276e-30

	
probable cold shock protein

     	

   





    

        
            
                XFF4834R
            
                
        
NP_637642.1 lcl|cspA-XCC2287

        
5

	
71

	
S=270 I=78 E=1.24083e-26

	
major cold shock protein

     	

   





    

        
            
                XFF4834R
            
                
        
YP_364323.1 lcl|cspA-XCV2592

        
5

	
71

	
S=264 I=75 E=6.56047e-26

	
major cold shock protein

     	

   





    

        
            
                XFF4834R
            
                
        
NP_642711.1 lcl|cspA-XAC2395

        
5

	
71

	
S=264 I=75 E=6.56047e-26

	
major cold shock protein

     	

   





    

        
            
                XFF4834R
            
                
        
 lcl|cspA2-XALc_1104

        
5

	
71

	
S=242 I=73 E=2.59703e-23

	
probable cold-shock protein

     	

   





    

        
            
                XFF4834R
            
                
        
YP_363120.1 lcl|scoF-XCV1389

        
7

	
71

	
S=216 I=64 E=3.73614e-20

	
cold shock protein

     	

   





    

        
            
                XFF4834R
            
                
        
NP_636660.1 lcl|scoF-XCC1286

        
7

	
71

	
S=216 I=64 E=3.73614e-20

	
cold shock protein

     	

   





    

        
            
                XFF4834R
            
                
        
NP_641672.1 lcl|scoF-XAC1337

        
7

	
71

	
S=216 I=64 E=3.73614e-20

	
cold shock protein

     	

   





    

        Iprscan
        IPR002059
	[PR00050]
	
9

	
24

	
	
Cold-shock protein, DNA-binding

    





    

        Iprscan
        IPR002059
	[PR00050]
	
29

	
38

	
	
Cold-shock protein, DNA-binding

    





    

        Iprscan
        IPR002059
	[PR00050]
	
44

	
62

	
	
Cold-shock protein, DNA-binding

    





    

        Iprscan
        IPR012340
	[G3DSA:2.40.50.140]
	
6

	
71

	
	
Nucleic acid-binding, OB-fold

    





    

        Iprscan
        IPR012156
	[PIRSF002599]
	
6

	
71

	
	
Cold shock, CspA

    





    

        Iprscan
        
	[PTHR11544]
	
1

	
68

	
	
-

    





    

        Iprscan
        IPR002059
	[PF00313]
	
6

	
70

	
	
Cold-shock protein, DNA-binding

    





    

        Iprscan
        IPR011129
	[SM00357]
	
8

	
71

	
	
Cold shock protein

    





    

        Iprscan
        IPR019844
	[PS00352]
	
20

	
38

	
	
Cold-shock conserved site

    





    

        Iprscan
        IPR016027
	[SSF50249]
	
6

	
71

	
	
Nucleic acid-binding, OB-fold-like

    




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ID


DE


EC


GO


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Show or not Access unfiltered results






    

       
            
                pubmed
            
        
	    
            
Set of Uniprot with relevant PubMed cross-references ncbi-blastp

        		
 	    
            197 hits
        
    

    

        
            
                swiss-prot
            
        
	    
            
Swiss-Prot ncbi-blastp

        		
 	    
            153 hits
        
    

    
    
    

        
            
                XFF4834R
            
        
    	
            
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp

        		        
        
            3 hits
        
    

        
    

        
            
                hamap
            
        
	
            
HAMAP scan

        		        
        
            0 hits
        
    

    
    

	    
            
                Interpro Scan
            
            
	        
                
IprScan

            		        
            
                10 hits
            
    








Show or not Miscellaneous analyses




    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetLocalBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBkVGRw7/XFF4834R_chr30330.xml_fasta", "https://iant.toulouse.inra.fr/bacteria/annotation/web/img/XFF4834R.png"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    
    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetNcbiBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBkVGRw7/XFF4834R_chr30330.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetUniprotBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBkVGRw7/XFF4834R_chr30330.xml_fasta"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetKeggBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBkVGRw7/XFF4834R_chr30330.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    

    






XFF4834R_chr33200798_3512649_f1_XFF4834R-XFF4834R_chr30560 XFF4834R_chr30560




    

         
             
            XFF4834R_chr30550
            
XFF4834R_chr30550
            
        		


       
           
	   Cluster
	   
DrawMap
	   
        		
	
        
            XML file
        	


	    FASTA file
        		
	
	
             
            Extract
Sequence
            
        		
	
	
             
            Codon
Usage
            
        		
    
    
            
            Framed
            
     
  	



	
            OrthoMCL
            
    
  	
    
    
    

     


	
             
            XFF4834R_chr30570
            
XFF4834R_chr30570
            
        		

    





    

        ID
        XFF4834R_chr33200798_3512649_f1_XFF4834R-XFF4834R_chr30560
    

    

        AC
        XFF4834R_chr30560
    

    

        LT
        XFF4834R_chr30560
    

    

        OR
        XFF4834R_chr from 3511798 to 3512649 on strand +
    

   

        DE
        putative AraC family transcriptional regulator
  

   

        IP
        4-hydroxyphenylacetate catabolism regulatory protein hpaA; Helix-turn-helix, AraC domain
  
  
  
  

        CL
        3.1.2.2 Activator	GO:0016563 
    

  

        EC
        
    

    
    

        GO
        
            InterPro
Cellular Component: intracellular (GO:0005622)
DNA-dependent (GO:0006355)
Molecular Function: transcription factor activity (GO:0003700)
Molecular Function: sequence-specific DNA binding (GO:0043565)


            Curated

        		
    


  

        PM
        
    

  

        AN
        
    

  

        CC
        COG: [K] Transcription; 
    

    

        CC
        MODEL: XFF4834R 
  
    
  

        CC
        STATUS: curated by darrasse (20120309)
  

  
  


    

        MW
        30768.9 Da
    


    

        SQ
        283 aa
    

    

         
        
........10........20........30........40........50
         |         |         |         |         |
MSIENPPTQIDALPPGVRASFEKADGPVLIAFLAELREVWAPETAWHAHV
RGQLMYVEHGVLTVHTEQGALSLPPGCAGWMPPGQQHTVELAGPMRGWGV
VVRPDACAALPAQGGVIRLTGLAREAIMRAASWPLDQPLDATRQRLAAVL
LDELCQVQIDHLHLPMPADRRLLRIARQLLDTPADPRPLDAWANWGGLSP
RSLSRHFRDETGLSFAQWRQQARLTEGLRRLSQGHAVAQVSDQLGYSSPS
AFVSVFHRHFGAPPTRYLAGSHARGLASPAASG

    






    

        
            
                XFF4834R
            
                
        
XFF4834R_chr39300 lcl|XFF4834R_chr42520214_4528224_f1_XFF4834R-XFF4834R_chr39300

        
189

	
267

	
S=101 I=30 E=7.25407e-06

	

     	

   





    

        
            
                XFF4834R
            
                
        
XFF4834R_chr25740 lcl|XFF4834R_chr28300192_2984908_f2_XFF4834R-XFF4834R_chr25740

        
168

	
269

	
S=95 I=26 E=3.90281e-05

	

     	

   





    

        
            
                XFF4834R
            
                
        
XFF4834R_chr03390 lcl|XFF4834R_chr03510360_0390247_r3_XFF4834R-XFF4834R_chr03390

        
171

	
271

	
S=94 I=31 E=6.24955e-05

	

     	

   





    

        
            
                XFF4834R
            
                
        
YP_363229.1 lcl|XCV1498

        
1

	
283

	
S=1410 I=96 E=8.44278e-164

	
AraC family transcriptional regulator

     	

   





    

        
            
                XFF4834R
            
                
        
NP_641777.1 lcl|XAC1442-XAC1442

        
13

	
283

	
S=1372 I=98 E=2.82722e-159

	
transcriptional regulator

     	

   





    

        
            
                XFF4834R
            
                
        
NP_636770.1 lcl|XCC1396

        
1

	
283

	
S=1261 I=86 E=8.1021e-146

	
transcriptional regulator

     	

   





    

        
            
                XFF4834R
            
                
        
NP_642552.1 lcl|yeaM-XAC2235

        
47

	
270

	
S=335 I=36 E=1.21285e-33

	
AraC family transcriptional regulator

     	

   





    

        
            
                XFF4834R
            
                
        
YP_364077.1 lcl|XCV2346

        
168

	
269

	
S=122 I=31 E=8.22898e-08

	
AraC family transcriptional regulator

     	

   





    

        
            
                XFF4834R
            
                
        
NP_635706.1 lcl|XCC0311

        
183

	
267

	
S=112 I=35 E=1.33976e-06

	
transcriptional regulator

     	

   





    

        
            
                XFF4834R
            
                
        
YP_364180.1 lcl|XCV2449

        
168

	
264

	
S=112 I=31 E=1.44913e-06

	
AraC family transcriptional regulator

     	

   





    

        
            
                XFF4834R
            
                
        
NP_637718.1 lcl|adpA-XCC2364

        
158

	
264

	
S=106 I=31 E=8.43296e-06

	
AraC family transcriptional regulator

     	

   





    

        
            
                XFF4834R
            
                
        
NP_644363.1 lcl|ftrA-XAC4064

        
189

	
267

	
S=101 I=30 E=3.20122e-05

	
transcriptional activator FtrA

     	

   





    

        
                pubmed
        
        

        
44

	
258

	
S=374 I=39 E=1.05285e-36

	
Transcriptional factor PhcT ; DNA-binding regulation

	
Pubmed 12081966

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
47

	
268

	
S=365 I=36 E=1.23072e-35

	
AraC protein ; DNA-binding Transcription regulation

	
Pubmed 12904565

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
47

	
267

	
S=289 I=32 E=1.9055e-26

	
Putative transcriptional regulator ; DNA-binding regulation

	
Pubmed 9791097,12823813

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
165

	
277

	
S=183 I=33 E=1.27321e-13

	
HTH-type transcriptional repressor of iron proteins A ; DNA-binding regulation

	
Pubmed 16179344

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
166

	
264

	
S=165 I=39 E=1.91488e-11

	
AraC-type transcriptional regulator ; DNA-binding regulation

	
Pubmed 16291687

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
184

	
266

	
S=126 I=36 E=1.20128e-06

	
HTH AraC-type regulator ; DNA-binding Transcription regulation

	
Pubmed 17564599

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
168

	
269

	
S=122 I=31 E=3.00072e-06

	
AraC family transcriptional regulator Putative transcriptional regulator, AraC family ; DNA-binding regulation

	
Pubmed 18487337,18502858

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
146

	
274

	
S=116 I=28 E=1.61444e-05

	
Arabinose operon regulatory protein ; Activator catabolism Carbohydrate metabolism Cytoplasm DNA-binding Repressor Transcription regulation

	
Pubmed 7019009,7008027

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
170

	
267

	
S=114 I=30 E=2.89546e-05

	
AgpT ; DNA-binding Plasmid Transcription regulation

	
Pubmed 10867229

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
146

	
270

	
S=113 I=29 E=3.96306e-05

	
Arabinose operon regulatory protein ; Activator catabolism Carbohydrate metabolism Cytoplasm DNA-binding Repressor Transcription regulation

	
Pubmed 2965663

    

    

         
        
prodomImg

    





    

        
            
                sp_Pdown
            
        
        
sp|P76241|YEAM_ECOLI

        
47

	
269

	
S=302 I=33 E=3.77464e-28

	
Uncharacterized HTH-type transcriptional regulator yeaM ; DNA-binding regulation

    





    

        Iprscan
        IPR003313
	[PF02311]
	
29

	
98

	
	
AraC protein, arabinose-binding/dimerisation

    





    

        Iprscan
        IPR000005
	[PF00165]
	
175

	
220

	
	
Helix-turn-helix, AraC type

    





    

        Iprscan
        IPR000005
	[PF00165]
	
231

	
269

	
	
Helix-turn-helix, AraC type

    





    

        Iprscan
        IPR018060
	[SM00342]
	
186

	
268

	
	
Helix-turn-helix, AraC domain

    





    

        Iprscan
        IPR018060
	[PS01124]
	
170

	
270

	
	
Helix-turn-helix, AraC domain

    





    

        
            
                
            
                
        
PD275086

        
71

	
162

	
S=180 I=42 E=2.21151e-14

    	
    





    

        
            
                
            
                
        
PD714020

        
13

	
42

	
S=150 I=100 E=1.20773e-10

    	
    





    

        
            
                
            
                
        
PDA86865

        
43

	
73

	
S=149 I=90 E=1.27259e-10

    	
    





    

        
            
                
            
                
        
PD376793

        
162

	
218

	
S=136 I=53 E=5.13059e-09

    	
    





    

        
            
                
            
                
        
PD884796

        
217

	
268

	
S=135 I=46 E=7.33523e-09

    	
    





    

        
            
                
            
                
        
PDA6N2H6

        
215

	
264

	
S=109 I=42 E=8.71076e-06

    	
    





    

        
            
                
            
                
        
PDA2N018

        
223

	
269

	
S=108 I=44 E=1.28958e-05

    	
    




Show or not Suggestions
Suggest an annotation


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ID


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CC


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                pubmed
            
        
	    
            
Set of Uniprot with relevant PubMed cross-references ncbi-blastp

        		
 	    
            10 hits
        
    

    

        
            
                swiss-prot
            
        
	    
            
Swiss-Prot ncbi-blastp

        		
 	    
            10 hits
        
    

    
    
    

        
            
                XFF4834R
            
        
    	
            
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp

        		        
        
            3 hits
        
    

        
    

        
            
                hamap
            
        
	
            
HAMAP scan

        		        
        
            0 hits
        
    

    
    

	    
            
                Interpro Scan
            
            
	        
                
IprScan

            		        
            
                11 hits
            
    








Show or not Miscellaneous analyses




    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetLocalBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBkVGRw7/XFF4834R_chr30560.xml_fasta", "https://iant.toulouse.inra.fr/bacteria/annotation/web/img/XFF4834R.png"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    
    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetNcbiBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBkVGRw7/XFF4834R_chr30560.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetUniprotBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBkVGRw7/XFF4834R_chr30560.xml_fasta"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetKeggBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBkVGRw7/XFF4834R_chr30560.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    

    






XFF4834R_chr41960527_4474255_r3_XFF4834R-XFF4834R_chr38830 XFF4834R_chr38830




    

         
             
            XFF4834R_chr38820
            
XFF4834R_chr38820
            
        		


       
           
	   Cluster
	   
DrawMap
	   
        		
	
        
            XML file
        	


	    FASTA file
        		
	
	
             
            Extract
Sequence
            
        		
	
	
             
            Codon
Usage
            
        		
    
    
            
            Framed
            
     
  	



	
            OrthoMCL
            
    
  	
    
    
    

     


	
             
            XFF4834R_chr38840
            
XFF4834R_chr38840
            
        		

    





    

        ID
        XFF4834R_chr41960527_4474255_r3_XFF4834R-XFF4834R_chr38830
    

    

        AC
        XFF4834R_chr38830
    

    

        LT
        XFF4834R_chr38830
    

    

        OR
        XFF4834R_chr from 4473527 to 4474255 on strand -
    

   

        DE
        probable Type III pantothenate kinase CoaX
  

   

        IP
        Bordetella pertussis Bvg accessory factor
  
  
  
  

        CL
        3.1.2.2 Activator	GO:0016563 
    

  

        EC
        
    

    
    

        GO
        
            InterPro
Biological Process: positive regulation of transcription (GO:0045941)
Molecular Function: transcription activator activity (GO:0016563)


            Curated

        		
    


  

        PM
        
    

  

        AN
        
    

  

        CC
        COG: [K] Transcription; 
    

    

        CC
        MODEL: XFF4834R 
  
    
  

        CC
        STATUS: curated by darrasse (20120316)
  

  
  


    

        MW
        25014.3 Da
    


    

        SQ
        242 aa
    

    

         
        
........10........20........30........40........50
         |         |         |         |         |
MSEWLFDLGNSRFKYAPLHGNRAGQVQAWAHGAEAMDAAALAALPSGRIA
YVASVAAPALTQRMIACLQERFAQVRIVRTTAECAGIRIAYADPSRFGVD
RFLALLGARGDAPVLVAGVGTALTIDVLGADGLHHGGRIAASPTTMREAL
HARAVQLPASGGDYVELAIDTDDALTSGCDGAAVALIERSLQHAQRSLGV
PVRLLVHGGGAPPLLPLLPDATFRAALVLDGLATWATAASSP

    






    

        Hamap
        COAX_MF_01274
	raw_score=1476 norm_score=14.362
	
Type III pantothenate kinase [coaX].

    





    

        
            
                XFF4834R
            
                
        
NP_644316.1 lcl|baf-XAC4017

        
1

	
242

	
S=1079 I=90 E=8.36749e-124

	
pantothenate kinase

     	

   





    

        
            
                XFF4834R
            
                
        
YP_365840.1 lcl|XCV4109

        
1

	
242

	
S=1062 I=88 E=9.27488e-122

	
pantothenate kinase

     	

   





    

        
            
                XFF4834R
            
                
        
NP_639276.1 lcl|baf-XCC3937

        
1

	
242

	
S=870 I=76 E=1.58966e-98

	
pantothenate kinase

     	

   





    

        
            
                XFF4834R
            
                
        
 lcl|XALc_0252

        
1

	
238

	
S=664 I=61 E=1.5842e-73

	
putative transcriptional regulator, bvg accessory factor family transcription regulator protein

     	

   





    

        
                pubmed
        
        

        
5

	
211

	
S=160 I=29 E=5.65065e-11

	
Putative uncharacterized protein ; ATP-binding Coenzyme biosynthesis Cytoplasm Kinase Nucleotide-binding Transferase

	
Pubmed 16309397

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
54

	
210

	
S=148 I=33 E=1.66442e-09

	
Type III pantothenate kinase EC=2.7.1.33 ; ATP-binding Coenzyme biosynthesis Cytoplasm Nucleotide-binding Transferase

	
Pubmed 10417135

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
48

	
233

	
S=146 I=29 E=2.85776e-09

	
Type III pantothenate kinase EC=2.7.1.33 ; Antibiotic resistance ATP-binding Coenzyme biosynthesis Cytoplasm Metal-binding Nucleotide-binding

	
Pubmed 16905099

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
54

	
210

	
S=145 I=33 E=3.77741e-09

	
Type III pantothenate kinase EC=2.7.1.33 ; ATP-binding Coenzyme biosynthesis Cytoplasm Nucleotide-binding Transcription regulation Transferase

	
Pubmed 7601846

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
68

	
233

	
S=144 I=34 E=5.89259e-09

	
Putative uncharacterized protein ; ATP-binding Coenzyme biosynthesis Cytoplasm Kinase Nucleotide-binding Transferase

	
Pubmed 16309397

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
68

	
209

	
S=132 I=32 E=1.48359e-07

	
Type III pantothenate kinase EC=2.7.1.33 ; ATP-binding Coenzyme biosynthesis Cytoplasm Metal-binding Nucleotide-binding Transferase

	
Pubmed 18700039

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
87

	
179

	
S=123 I=33 E=2.17549e-06

	
Type III pantothenate kinase EC=2.7.1.33 ; ATP-binding Coenzyme biosynthesis Cytoplasm Metal-binding Nucleotide-binding Transferase

	
Pubmed 19008447

    

    

         
        
prodomImg

    





    

        
            
                sp_Pdown
            
        
        
sp|Q8PFG5|COAX_XANAC

        
1

	
242

	
S=1079 I=90 E=2.11152e-122

	
Type III pantothenate kinase EC=2.7.1.33 ; ATP-binding Coenzyme biosynthesis Cytoplasm Nucleotide-binding Transferase

    





    

        
            
                sp_Pdown
            
        
        
sp|Q3BN23|COAX_XANC5

        
1

	
242

	
S=1062 I=88 E=2.34049e-120

	
Type III pantothenate kinase EC=2.7.1.33 ; ATP-binding Coenzyme biosynthesis Cytoplasm Nucleotide-binding Transferase

    





    

        
            
                sp_Pdown
            
        
        
sp|Q5H5T7|COAX_XANOR

        
1

	
242

	
S=1012 I=87 E=2.39051e-114

	
Type III pantothenate kinase EC=2.7.1.33 ; ATP-binding Coenzyme biosynthesis Cytoplasm Nucleotide-binding Transferase

    





    

        
            
                sp_Pdown
            
        
        
sp|B2SS98|COAX_XANOP

        
1

	
242

	
S=1012 I=87 E=2.39051e-114

	
Type III pantothenate kinase EC=2.7.1.33 ; ATP-binding Coenzyme biosynthesis Cytoplasm Nucleotide-binding Transferase

    





    

        
            
                sp_Pdown
            
        
        
sp|Q2P8I1|COAX_XANOM

        
1

	
242

	
S=1012 I=87 E=2.39051e-114

	
Type III pantothenate kinase EC=2.7.1.33 ; ATP-binding Coenzyme biosynthesis Cytoplasm Nucleotide-binding Transferase

    





    

        Iprscan
        
	[MF_01274]
	
2

	
240

	
	
-

    





    

        Iprscan
        IPR004619
	[PF03309]
	
3

	
193

	
	
Bordetella pertussis Bvg accessory factor

    





    

        Iprscan
        IPR004619
	[TIGR00671]
	
3

	
237

	
	
Bordetella pertussis Bvg accessory factor

    





    

        Iprscan
        
	[seg]
	
28

	
43

	
	
-

    





    

        Iprscan
        
	[seg]
	
212

	
219

	
	
-

    





    

        
            
                
            
                
        
PDA4N1O5

        
50

	
85

	
S=175 I=97 E=9.37023e-14

    	
    





    

        
            
                
            
                
        
PD690409

        
1

	
49

	
S=170 I=65 E=4.08949e-13

    	
    




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ID


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PM



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                pubmed
            
        
	    
            
Set of Uniprot with relevant PubMed cross-references ncbi-blastp

        		
 	    
            7 hits
        
    

    

        
            
                swiss-prot
            
        
	    
            
Swiss-Prot ncbi-blastp

        		
 	    
            123 hits
        
    

    
    
    

        
            
                XFF4834R
            
        
    	
            
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp

        		        
        
            0 hits
        
    

        
    

        
            
                hamap
            
        
	
            
HAMAP scan

        		        
        
            0 hits
        
    

    
    

	    
            
                Interpro Scan
            
            
	        
                
IprScan

            		        
            
                5 hits
            
    








Show or not Miscellaneous analyses




    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetLocalBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBkVGRw7/XFF4834R_chr38830.xml_fasta", "https://iant.toulouse.inra.fr/bacteria/annotation/web/img/XFF4834R.png"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    
    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetNcbiBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBkVGRw7/XFF4834R_chr38830.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetUniprotBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBkVGRw7/XFF4834R_chr38830.xml_fasta"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetKeggBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBkVGRw7/XFF4834R_chr38830.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    

    






ftrA XFF4834R_chr39300




    

         
             
            XFF4834R_chr39290
            
XFF4834R_chr39290
            
        		


       
           
	   Cluster
	   
DrawMap
	   
        		
	
        
            XML file
        	


	    FASTA file
        		
	
	
             
            Extract
Sequence
            
        		
	
	
             
            Codon
Usage
            
        		
    
    
            
            Framed
            
     
  	



	
            OrthoMCL
            
    
  	
    
    
    

     


	
             
            XFF4834R_chr39310
            
XFF4834R_chr39310
            
        		

    





    

        ID
        ftrA
    

    

        AC
        XFF4834R_chr39300
    

    

        LT
        XFF4834R_chr39300
    

    

        OR
        XFF4834R_chr from 4527214 to 4528224 on strand +
    

   

        DE
        Transcriptional activator FtrA 
  

   

        IP
        ThiJ/PfpI; Helix-turn-helix, AraC domain
  
  
  
  

        CL
        3.1.2.2 Activator	GO:0016563 
    

  

        EC
        
    

    
    

        GO
        
            InterPro
Biological Process: regulation of transcription (GO:0045449)
Cellular Component: intracellular (GO:0005622)
DNA-dependent (GO:0006355)
Molecular Function: DNA binding (GO:0003677)
Molecular Function: transcription factor activity (GO:0003700)
Molecular Function: sequence-specific DNA binding (GO:0043565)


            Curated

        		
    


  

        PM
        
    

  

        AN
        58% id with FtrA (Caulobacter crescentus)
    

  

        CC
        COG: [K] Transcription; 
    

    

        CC
        MODEL: XFF4834R 
  
    
  

        CC
        STATUS: curated by darrasse (20120316)
  

  
  


    

        MW
        36469.5 Da
    


    

        SQ
        336 aa
    

    

         
        
........10........20........30........40........50
         |         |         |         |         |
MPTSTPRARRHGLPPLVVVVAYDQLGLFEFGITTEIFGLPRPEVGPGWYR
FAIAAAEPGPLRALGGLRLEVDGGLDLLDAAHTIIVPSWRDTSASAPAAL
IKALQRAHKRKTRIVSICAGAFVLAQAGLLQGRRATTHWRNAEVLASHYP
QITVEPGVLYVDEGDILTSAGSAAGIDLCLHIVRADFGPAVANQVAKRLV
MPVHRDGGQAQFIDRPVPPIHESARLGPLLERITQDLTANHCVDALASAA
GMSRRTFLRRFQATTGMSPGKWIVNERLNRAREMLETSGADIEQIATRCG
FGSTETLRHHFRRTLALSPTQYRRVFGGHRDAGEGI

    






    

        
            
                XFF4834R
            
                
        
XFF4834R_chr22820 lcl|XFF4834R_chr24870286_2640708_r1_XFF4834R-XFF4834R_chr22820

        
243

	
322

	
S=114 I=40 E=2.40903e-07

	
predicted DNA-binding transcriptional regulator

     	

   





    

        
            
                XFF4834R
            
                
        
XFF4834R_chr25740 lcl|XFF4834R_chr28300192_2984908_f2_XFF4834R-XFF4834R_chr25740

        
225

	
327

	
S=112 I=27 E=4.35837e-07

	

     	

   





    

        
            
                XFF4834R
            
                
        
XFF4834R_chr17900 lcl|XFF4834R_chr19080421_2048329_r3_XFF4834R-XFF4834R_chr17900

        
243

	
335

	
S=102 I=27 E=8.74746e-06

	
predicted DNA-binding transcriptional regulator

     	

   





    

        
            
                XFF4834R
            
                
        
XFF4834R_chr30560 lcl|XFF4834R_chr33200798_3512649_f1_XFF4834R-XFF4834R_chr30560

        
243

	
322

	
S=101 I=30 E=9.96965e-06

	
predicted DNA-binding transcriptional regulator

     	

   





    

        
            
                XFF4834R
            
                
        
XFF4834R_chr05920 lcl|XFF4834R_chr06130827_0667771_f2_XFF4834R-XFF4834R_chr05920

        
226

	
324

	
S=98 I=31 E=2.51217e-05

	

     	

   





    

        
            
                XFF4834R
            
                
        
NP_644363.1 lcl|ftrA-XAC4064

        
1

	
336

	
S=1639 I=94 E=0

	
transcriptional activator FtrA

     	

   





    

        
            
                XFF4834R
            
                
        
NP_637718.1 lcl|adpA-XCC2364

        
14

	
326

	
S=563 I=40 E=4.03801e-61

	
AraC family transcriptional regulator

     	

   





    

        
            
                XFF4834R
            
                
        
NP_638911.2 lcl|XCC3565

        
71

	
196

	
S=166 I=34 E=4.57828e-13

	
ThiJ/PfpI family protein

     	

   





    

        
            
                XFF4834R
            
                
        
NP_635706.1 lcl|XCC0311

        
243

	
325

	
S=145 I=35 E=1.79663e-10

	
transcriptional regulator

     	

   





    

        
            
                XFF4834R
            
                
        
YP_364077.1 lcl|XCV2346

        
243

	
322

	
S=121 I=33 E=1.53184e-07

	
AraC family transcriptional regulator

     	

   





    

        
            
                XFF4834R
            
                
        
NP_642483.2 lcl|XAC2166-XAC2166

        
243

	
322

	
S=115 I=40 E=8.53404e-07

	
transcriptional regulator

     	

   





    

        
            
                XFF4834R
            
                
        
YP_364180.1 lcl|XCV2449

        
243

	
324

	
S=113 I=30 E=1.40277e-06

	
AraC family transcriptional regulator

     	

   





    

        
            
                XFF4834R
            
                
        
NP_637770.1 lcl|XCC2416

        
225

	
327

	
S=113 I=27 E=1.49105e-06

	
transcriptional regulator

     	

   





    

        
            
                XFF4834R
            
                
        
YP_362360.1 lcl|XCV0629

        
98

	
212

	
S=112 I=35 E=1.62688e-06

	
putative secreted protein

     	

   





    

        
            
                XFF4834R
            
                
        
YP_364480.1 lcl|XCV2749

        
225

	
327

	
S=112 I=27 E=1.64113e-06

	
AraC family transcriptional regulator