4 hits
| XFF4834R_chr05290 | XFF4834R_chr05400667_0594996_r1_XFF4834R-XFF4834R_chr05290 | XFF4834R_chr05290 | 23S rRNA-associated protein |
| XFF4834R_chr07760 | mraW | XFF4834R_chr07760 | Probable S-adenosyl-L-methionine-dependent methyltransferase, MraW |
| XFF4834R_chr21190 | rlmN | XFF4834R_chr21190 | probable ribosomal RNA large subunit methyltransferase N |
| XFF4834R_chr29190 | rlmL | XFF4834R_chr29190 | Ribosomal RNA large subunit methyltransferase L |
XFF4834R_chr05280 |
DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
|
|
XFF4834R_chr05300 |
| ID | XFF4834R_chr05400667_0594996_r1_XFF4834R-XFF4834R_chr05290 |
| AC | XFF4834R_chr05290 |
| LT | XFF4834R_chr05290 |
| OR | XFF4834R_chr from 594667 to 595056 on strand - |
| DE | 23S rRNA-associated protein |
| IP | |
| CL | 2.2.6 rRNA, stable RNA GO:0016072 |
| EC | |
| GO |
InterPro Curated |
| PM | |
| AN | Crystal structure of the conserved hypothetical cytosolic protein Xcc0516 from Xanthomonas campestris reveals a novel quaternary structure assembled by five four-helix bundles. PMID: 16948161. 20 codons added to correspond to Xcc0516 protein. |
| CC | COG: [S] Function unknown; |
| CC | MODEL: XFF4834R |
| CC | STATUS: curated by koebnik (20100701) |
| MW | 14570.2 Da |
| SQ | 129 aa |
........10........20........30........40........50 |
|
NP_635908.1 lcl|XCC0516 |
1 |
128 |
S=575 I=86 E=3.13244e-63 |
hypothetical protein |
|
|
NP_640884.1 lcl|XAC0531-XAC0531 |
1 |
103 |
S=516 I=96 E=5.39379e-56 |
hypothetical protein |
|
|
YP_362295.1 lcl|XCV0564 |
5 |
124 |
S=365 I=57 E=1.05804e-37 |
hypothetical protein |
|
14 |
125 |
S=265 I=49 E=3.77837e-24 |
S23 ribosomal protein |
Pubmed 19643902 |
|
|
||||||
|
|
14 |
95 |
S=201 I=46 E=2.28335e-16 |
Predicted 23s rRNA protein |
Pubmed 15997700 |
|
|
||||||
|
|
12 |
128 |
S=177 I=35 E=1.69333e-13 |
S23 ribosomal protein |
||
|
||||||
|
|
9 |
95 |
S=152 I=39 E=1.9251e-10 |
Putative uncharacterized protein |
Pubmed 8341711 |
|
|
||||||
|
|
12 |
97 |
S=147 I=35 E=7.11915e-10 |
23Sr RNA gene |
Pubmed 7751314 |
|
|
||||||
 |
[PF05635] | 10 |
117 |
- |
|
9 |
66 |
S=180 I=55 E=2.60371e-14 |
|
|
68 |
123 |
S=127 I=43 E=6.64292e-08 |
|
|
45 |
94 |
S=105 I=52 E=3.2136e-05 |
Suggestions Access unfiltered results
|
|
Set of Uniprot with relevant PubMed cross-references ncbi-blastp |
7 hits |
|
Swiss-Prot ncbi-blastp |
0 hits |
|
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp |
1 hits |
|
HAMAP scan |
0 hits |
|
|
IprScan |
1 hits |
Miscellaneous analyses
|
XFF4834R_chr07750 |
DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
|
|
XFF4834R_chr07770 |
| ID | mraW |
| AC | XFF4834R_chr07760 |
| LT | XFF4834R_chr07760 |
| OR | XFF4834R_chr from 896110 to 897153 on strand + |
| DE | Probable S-adenosyl-L-methionine-dependent methyltransferase, MraW |
| IP | S-adenosyl-L-methionine-dependent methyltransferase, MraW |
| CL | 2.2.6 rRNA, stable RNA GO:0016072 |
| EC | |
| GO |
InterPro Molecular Function: methyltransferase activity (GO:0008168) Curated |
| PM | |
| AN | |
| CC | COG: [M] Cell wall/membrane/envelope biogenesis; |
| CC | MODEL: XFF4834R |
| CC | STATUS: curated by opruvost (20100819) |
| MW | 36954.4 Da |
| SQ | 347 aa |
........10........20........30........40........50 |
|
|
YP_362554.1 lcl|mraW-XCV0823 |
11 |
347 |
S=1500 I=88 E=1.22932e-174 |
S-adenosyl-methyltransferase MraW |
|
|
NP_641124.1 lcl|mraW-XAC0772 |
11 |
346 |
S=1447 I=85 E=2.97654e-168 |
S-adenosyl-methyltransferase MraW |
|
|
NP_636109.1 lcl|mraW-XCC0718 |
11 |
346 |
S=1395 I=82 E=5.64596e-162 |
S-adenosyl-methyltransferase MraW |
|
|
1 |
329 |
S=1188 I=73 E=6.93617e-137 |
putative s-adenosyl-methyltransferase protein |
|
|
18 |
315 |
S=692 I=49 E=4.43021e-75 |
Ribosomal RNA small subunit methyltransferase H EC=2.1.1.- ; Cytoplasm rRNA processing S-adenosyl-L-methionine |
||
|
||||||
|
|
18 |
315 |
S=692 I=49 E=4.43021e-75 |
Ribosomal RNA small subunit methyltransferase H EC=2.1.1.- ; Cytoplasm rRNA processing S-adenosyl-L-methionine |
Pubmed 19786035 |
|
|
||||||
|
|
17 |
318 |
S=686 I=48 E=1.90008e-74 |
Ribosomal RNA small subunit methyltransferase H EC=2.1.1.- ; Cytoplasm rRNA processing S-adenosyl-L-methionine |
Pubmed 12153713 |
|
|
||||||
|
|
9 |
317 |
S=668 I=47 E=2.9334e-72 |
Ribosomal RNA small subunit methyltransferase H EC=2.1.1.- ; Cytoplasm rRNA processing S-adenosyl-L-methionine |
Pubmed 19447908 |
|
|
||||||
|
|
18 |
315 |
S=658 I=48 E=4.73441e-71 |
S-adenosyl-methyltransferase |
Pubmed 20028823 |
|
|
||||||
|
|
11 |
347 |
S=1500 I=88 E=3.50748e-173 |
Ribosomal RNA small subunit methyltransferase H EC=2.1.1.- ; Cytoplasm rRNA processing S-adenosyl-L-methionine |
|
|
11 |
347 |
S=1477 I=86 E=1.93386e-170 |
Ribosomal RNA small subunit methyltransferase H EC=2.1.1.- ; Cytoplasm rRNA processing S-adenosyl-L-methionine |
|
|
11 |
347 |
S=1477 I=86 E=1.93386e-170 |
Ribosomal RNA small subunit methyltransferase H EC=2.1.1.- ; Cytoplasm rRNA processing S-adenosyl-L-methionine |
|
|
11 |
347 |
S=1467 I=86 E=3.28881e-169 |
Ribosomal RNA small subunit methyltransferase H EC=2.1.1.- ; Cytoplasm rRNA processing S-adenosyl-L-methionine |
|
|
11 |
346 |
S=1447 I=85 E=8.49263e-167 |
Ribosomal RNA small subunit methyltransferase H EC=2.1.1.- ; Cytoplasm rRNA processing S-adenosyl-L-methionine |
|
[G3DSA:3.40.50.150] | 9 |
321 |
- |
|
IPR002903 [MF_01007] | 15 |
316 |
S-adenosyl-L-methionine-dependent methyltransferase, MraW |
|
IPR002903 [PIRSF004486] | 13 |
318 |
S-adenosyl-L-methionine-dependent methyltransferase, MraW |
|
IPR002903 [PTHR11265] | 33 |
318 |
S-adenosyl-L-methionine-dependent methyltransferase, MraW |
|
IPR002903 [PF01795] | 17 |
315 |
S-adenosyl-L-methionine-dependent methyltransferase, MraW |
|
IPR002903 [TIGR00006] | 12 |
316 |
S-adenosyl-L-methionine-dependent methyltransferase, MraW |
|
[seg] | 171 |
182 |
- |
|
[seg] | 224 |
239 |
- |
|
|
20 |
125 |
S=238 I=50 E=2.01863e-21 |
|
|
18 |
259 |
S=218 I=28 E=6.2057e-19 |
|
|
240 |
316 |
S=190 I=55 E=1.36859e-15 |
|
|
18 |
88 |
S=175 I=52 E=9.9824e-14 |
|
|
130 |
220 |
S=171 I=45 E=2.60466e-13 |
|
|
39 |
164 |
S=148 I=34 E=2.05318e-10 |
|
|
18 |
130 |
S=139 I=31 E=2.40005e-09 |
|
|
317 |
347 |
S=124 I=81 E=1.56299e-07 |
|
|
10 |
83 |
S=115 I=40 E=1.77988e-06 |
|
|
243 |
316 |
S=109 I=35 E=1.10096e-05 |
|
[SSF81799] | 122 |
221 |
- |
|
[SSF53335] | 12 |
316 |
- |
Suggestions Access unfiltered results
|
|
Set of Uniprot with relevant PubMed cross-references ncbi-blastp |
83 hits |
|
|
Swiss-Prot ncbi-blastp |
0 hits |
|
|
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp |
0 hits |
|
|
HAMAP scan |
0 hits |
|
|
IprScan |
10 hits |
Miscellaneous analyses
|
XFF4834R_chr21180 |
DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
|
|
XFF4834R_chr21200 |
| ID | rlmN |
| AC | XFF4834R_chr21190 |
| LT | XFF4834R_chr21190 |
| OR | XFF4834R_chr from 2458899 to 2460104 on strand + |
| DE | probable ribosomal RNA large subunit methyltransferase N |
| IP | Ribosomal RNA large subunit methyltransferase RlmN;; Radical SAM |
| CL | 2.2.6 rRNA, stable RNA GO:0016072 |
| EC | |
| GO |
InterPro Biological Process: rRNA processing (GO:0006364) Cellular Component: cytoplasm (GO:0005737) Molecular Function: catalytic activity (GO:0003824) Molecular Function: iron-sulfur cluster binding (GO:0051536) Molecular Function: RNA methyltransferase activity (GO:0008173) Curated |
| PM | |
| AN | |
| CC | COG: [R] General function prediction only; |
| CC | MODEL: XFF4834R |
| CC | STATUS: curated by pieretti (20100924) |
| MW | 44914 Da |
| SQ | 401 aa |
........10........20........30........40........50 |
|
RLMN_MF_01849 | raw_score=7441 norm_score=38.867 | Ribosomal RNA large subunit methyltransferase N [rlmN]. |
|
|
NP_642342.1 lcl|XAC2016-XAC2016 |
1 |
401 |
S=2145 I=99 E=0 |
hypothetical protein |
|
|
YP_363798.1 lcl|XCV2067 |
1 |
401 |
S=2131 I=99 E=0 |
radical SAM superfamily protein |
|
|
NP_637347.1 lcl|XCC1982 |
1 |
401 |
S=2073 I=97 E=0 |
hypothetical protein |
|
|
1 |
399 |
S=1913 I=88 E=0 |
conserved hypothetical protein 48 |
|
|
22 |
387 |
S=1100 I=57 E=1.43476e-124 |
Ribosomal RNA large subunit methyltransferase N 2 EC=2.1.1.- ; 4Fe-4S Cytoplasm Iron Iron-sulfur Metal-binding rRNA processing S-adenosyl-L |
Pubmed 8973346 |
|
|
||||||
|
|
22 |
395 |
S=1014 I=53 E=4.34337e-114 |
Ribosomal RNA large subunit methyltransferase N EC=2.1.1.- ; 4Fe-4S Antibiotic resistance Cytoplasm Iron Iron-sulfur Metal-binding rRNA proces |
Pubmed 7926684 |
|
|
||||||
|
|
24 |
394 |
S=752 I=43 E=2.08696e-82 |
Predicted FeS cluster redox protein |
Pubmed 18028413 |
|
|
||||||
|
|
42 |
373 |
S=717 I=44 E=4.25164e-78 |
Putative uncharacterized protein |
Pubmed 14617179 |
|
|
||||||
|
|
22 |
373 |
S=704 I=41 E=1.50396e-76 |
Putative uncharacterized protein |
Pubmed 14617179 |
|
|
||||||
|
|
19 |
373 |
S=693 I=40 E=3.68879e-75 |
Ribosomal RNA large subunit methyltransferase N EC=2.1.1.- ; 4Fe-4S Cytoplasm Iron Iron-sulfur Metal-binding rRNA processing S-adenosyl-L-methionine |
Pubmed 17038625 |
|
|
||||||
|
|
42 |
376 |
S=626 I=38 E=4.59655e-67 |
Ribosomal RNA large subunit methyltransferase N EC=2.1.1.- ; 4Fe-4S Cytoplasm Iron Iron-sulfur Metal-binding rRNA processing S-adenosyl-L-methionine |
Pubmed 12949193 |
|
|
||||||
|
|
42 |
375 |
S=607 I=40 E=8.23005e-65 |
Ribosomal RNA large subunit methyltransferase N EC=2.1.1.- ; 4Fe-4S Cytoplasm Iron Iron-sulfur Metal-binding rRNA processing S-adenosyl-L-methionine |
Pubmed 18441057 |
|
|
||||||
|
|
42 |
375 |
S=605 I=40 E=1.62461e-64 |
Ribosomal RNA large subunit methyltransferase N EC=2.1.1.- ; 4Fe-4S Cytoplasm Iron Iron-sulfur Metal-binding rRNA processing S-adenosyl-L-methionine |
Pubmed 18812508 |
|
|
||||||
|
|
42 |
375 |
S=595 I=39 E=2.64504e-63 |
Florfenicol resistance protein |
Pubmed 12446909 |
|
|
||||||
|
|
1 |
401 |
S=2149 I=100 E=0 |
Ribosomal RNA large subunit methyltransferase N EC=2.1.1.- ; 4Fe-4S Cytoplasm Iron Iron-sulfur Metal-binding rRNA processing S-adenosyl-L-methionine |
|
|
1 |
401 |
S=2133 I=99 E=0 |
Ribosomal RNA large subunit methyltransferase N EC=2.1.1.- ; 4Fe-4S Cytoplasm Iron Iron-sulfur Metal-binding rRNA processing S-adenosyl-L-methionine |
|
|
1 |
401 |
S=2108 I=98 E=0 |
Ribosomal RNA large subunit methyltransferase N EC=2.1.1.- ; 4Fe-4S Cytoplasm Iron Iron-sulfur Metal-binding rRNA processing S-adenosyl-L-methionine |
|
|
1 |
401 |
S=2108 I=98 E=0 |
Ribosomal RNA large subunit methyltransferase N EC=2.1.1.- ; 4Fe-4S Cytoplasm Iron Iron-sulfur Metal-binding rRNA processing S-adenosyl-L-methionine |
|
|
1 |
401 |
S=2108 I=98 E=0 |
Ribosomal RNA large subunit methyltransferase N EC=2.1.1.- ; 4Fe-4S Cytoplasm Iron Iron-sulfur Metal-binding rRNA processing S-adenosyl-L-methionine |
|
IPR004383 [MF_01849] | 24 |
378 |
Ribosomal RNA large subunit methyltransferase RlmN; |
|
IPR004383 [PIRSF006004] | 9 |
389 |
Ribosomal RNA large subunit methyltransferase RlmN; |
|
IPR007197 [PF04055] | 128 |
303 |
Radical SAM |
|
IPR004383 [TIGR00048] | 20 |
385 |
Ribosomal RNA large subunit methyltransferase RlmN; |
|
|
134 |
205 |
S=261 I=64 E=4.01092e-24 |
|
|
46 |
133 |
S=248 I=55 E=1.28906e-22 |
|
|
134 |
217 |
S=200 I=44 E=8.73959e-17 |
|
|
323 |
388 |
S=174 I=57 E=1.47094e-13 |
|
|
1 |
40 |
S=153 I=80 E=4.29149e-11 |
|
|
128 |
373 |
S=152 I=24 E=5.82285e-11 |
|
|
376 |
401 |
S=126 I=100 E=7.54472e-08 |
|
|
266 |
307 |
S=119 I=48 E=6.55687e-07 |
|
|
236 |
265 |
S=116 I=70 E=1.568e-06 |
|
|
202 |
260 |
S=115 I=38 E=2.03677e-06 |
Suggestions Access unfiltered results
|
|
Set of Uniprot with relevant PubMed cross-references ncbi-blastp |
37 hits |
|
|
Swiss-Prot ncbi-blastp |
0 hits |
|
|
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp |
0 hits |
|
|
HAMAP scan |
1 hits |
|
|
IprScan |
4 hits |
Miscellaneous analyses
|
XFF4834R_chr29180 |
DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
|
|
XFF4834R_chr29200 |
| ID | rlmL |
| AC | XFF4834R_chr29190 |
| LT | XFF4834R_chr29190 |
| OR | XFF4834R_chr from 3354857 to 3356992 on strand - |
| DE | Ribosomal RNA large subunit methyltransferase L |
| IP | Putative RNA methylase; DNA methylase, N-6 adenine-specific, conserved site |
| CL | 2.2.6 rRNA, stable RNA GO:0016072 |
| EC | |
| GO |
InterPro Biological Process: methylation (GO:0032259) Molecular Function: methyltransferase activity (GO:0008168) Molecular Function: nucleic acid binding (GO:0003676) Curated |
| PM | |
| AN | |
| CC | COG: [L] Replication, recombination and repair; |
| CC | MODEL: XFF4834R |
| CC | STATUS: curated by royer (20101104) |
| MW | 78280.1 Da |
| SQ | 711 aa |
........10........20........30........40........50 |
|
|
XFF4834R_chr42880 lcl|rlmI-XFF4834R_chr42880 |
515 |
663 |
S=107 I=25 E=4.22615e-06 |
23S rRNA m(5)C1962 methyltransferase, SAM-dependent |
|
|
NP_641926.1 lcl|XAC1594-XAC1594 |
1 |
711 |
S=3305 I=89 E=0 |
23S rRNA m(2)G2445 methyltransferase |
|
|
YP_363366.1 lcl|XCV1635 |
1 |
711 |
S=3279 I=88 E=0 |
23S rRNA m(2)G2445 methyltransferase |
|
|
NP_636916.2 lcl|XCC1545 |
1 |
711 |
S=3216 I=86 E=0 |
23S rRNA m(2)G2445 methyltransferase |
|
|
1 |
709 |
S=2551 I=68 E=0 |
putative rna methylase protein |
|
|
NP_644658.1 lcl|XAC4364-XAC4364 |
515 |
663 |
S=104 I=24 E=3.94109e-05 |
oxidoreductase |
|
|
YP_366207.1 lcl|XCV4476 |
515 |
632 |
S=104 I=27 E=4.45274e-05 |
hypothetical protein |
|
|
3 |
707 |
S=1266 I=41 E=2.72832e-144 |
Ribosomal RNA large subunit methyltransferase L EC=2.1.1.52 ; Cytoplasm RNA-binding rRNA processing S-adenosyl-L-methionine |
Pubmed 16995898 |
|
|
||||||
|
|
3 |
379 |
S=374 I=30 E=3.21022e-36 |
Tou5 ; Methyltransferase |
Pubmed 10844690 |
|
|
||||||
|
|
34 |
371 |
S=370 I=30 E=8.74948e-36 |
Putative RNA methyltransferase ypsC EC=2.1.1.- |
Pubmed 8760912 |
|
|
||||||
|
|
3 |
379 |
S=360 I=30 E=1.30557e-34 |
Tou5 ; Methyltransferase |
Pubmed 10844690 |
|
|
||||||
|
|
34 |
371 |
S=347 I=30 E=5.35612e-33 |
Nucleic acid methylase ; Methyltransferase |
Pubmed 15317783 |
|
|
||||||
|
|
517 |
668 |
S=169 I=29 E=2.01537e-11 |
Putative uncharacterized protein |
Pubmed 15882423 |
|
|
||||||
|
|
515 |
668 |
S=137 I=24 E=1.68723e-07 |
Putative uncharacterized protein |
Pubmed 16549667 |
|
|
||||||
|
|
1 |
711 |
S=3305 I=89 E=0 |
Ribosomal RNA large subunit methyltransferase L EC=2.1.1.52 ; Cytoplasm RNA-binding rRNA processing S-adenosyl-L-methionine |
|
|
1 |
711 |
S=3279 I=88 E=0 |
Ribosomal RNA large subunit methyltransferase L EC=2.1.1.52 ; Cytoplasm RNA-binding rRNA processing S-adenosyl-L-methionine |
|
|
1 |
711 |
S=3248 I=87 E=0 |
Ribosomal RNA large subunit methyltransferase L EC=2.1.1.52 ; Cytoplasm RNA-binding rRNA processing S-adenosyl-L-methionine |
|
|
1 |
711 |
S=3248 I=87 E=0 |
Ribosomal RNA large subunit methyltransferase L EC=2.1.1.52 ; Cytoplasm RNA-binding rRNA processing S-adenosyl-L-methionine |
|
[G3DSA:3.40.50.150] | 532 |
668 |
- |
|
IPR017244 [MF_01858] | 3 |
711 |
S-adenosyl-L-dependent RNA methyltransferase, bacteria, |
|
IPR017244 [PIRSF037618] | 1 |
711 |
S-adenosyl-L-dependent RNA methyltransferase, bacteria, |
|
IPR004114 [PF02926] | 67 |
153 |
THUMP |
|
IPR000241 [PF01170] | 161 |
375 |
Putative RNA methylase |
|
IPR016065 [PF03602] | 532 |
686 |
Protein of unknown function methylase putative |
|
IPR002052 [PS00092] | 308 |
314 |
DNA methylase, N-6 adenine-specific, conserved site |
|
IPR000241 [PS01261] | 198 |
209 |
Putative RNA methylase |
|
IPR004114 [PS51165] | 42 |
153 |
THUMP |
|
[seg] | 10 |
24 |
- |
|
[seg] | 317 |
328 |
- |
|
[seg] | 468 |
480 |
- |
|
[seg] | 561 |
579 |
- |
|
[seg] | 647 |
658 |
- |
|
|
151 |
219 |
S=223 I=62 E=2.29396e-19 |
|
|
220 |
261 |
S=205 I=93 E=3.86412e-17 |
|
|
350 |
398 |
S=201 I=78 E=1.00825e-16 |
|
|
49 |
186 |
S=142 I=25 E=1.56365e-09 |
|
|
262 |
353 |
S=134 I=34 E=1.52201e-08 |
|
|
111 |
152 |
S=128 I=52 E=8.18865e-08 |
|
|
667 |
710 |
S=126 I=47 E=1.39376e-07 |
|
|
609 |
663 |
S=121 I=41 E=5.38391e-07 |
|
|
33 |
153 |
S=117 I=24 E=1.76223e-06 |
|
|
398 |
434 |
S=112 I=73 E=6.51686e-06 |
Suggestions Access unfiltered results
|
|
Set of Uniprot with relevant PubMed cross-references ncbi-blastp |
7 hits |
|
|
Swiss-Prot ncbi-blastp |
240 hits |
|
|
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp |
1 hits |
|
|
HAMAP scan |
0 hits |
|
|
IprScan |
14 hits |
Miscellaneous analyses
