Xanthomonas fuscans subsp. fuscans

4 hits

  1. XFF4834R_chr05290XFF4834R_chr05400667_0594996_r1_XFF4834R-XFF4834R_chr05290XFF4834R_chr0529023S rRNA-associated protein
  2. XFF4834R_chr07760mraWXFF4834R_chr07760Probable S-adenosyl-L-methionine-dependent methyltransferase, MraW
  3. XFF4834R_chr21190rlmNXFF4834R_chr21190probable ribosomal RNA large subunit methyltransferase N
  4. XFF4834R_chr29190rlmLXFF4834R_chr29190Ribosomal RNA large subunit methyltransferase L

XFF4834R_chr05400667_0594996_r1_XFF4834R-XFF4834R_chr05290 XFF4834R_chr05290
XFF4834R_chr05280
XFF4834R_chr05280 		Cluster
DrawMap 		XML file

FASTA file 		Extract
Sequence 		Codon
Usage 		Framed OrthoMCL XFF4834R_chr05300
XFF4834R_chr05300
ID XFF4834R_chr05400667_0594996_r1_XFF4834R-XFF4834R_chr05290
AC XFF4834R_chr05290
LT XFF4834R_chr05290
OR XFF4834R_chr from 594667 to 595056 on strand -
DE 23S rRNA-associated protein
IP
CL 2.2.6 rRNA, stable RNA GO:0016072
EC
GO InterPro


Curated
PM
AN Crystal structure of the conserved hypothetical cytosolic protein Xcc0516 from Xanthomonas campestris reveals a novel quaternary structure assembled by five four-helix bundles. PMID: 16948161. 20 codons added to correspond to Xcc0516 protein.
CC COG: [S] Function unknown;
CC MODEL: XFF4834R
CC STATUS: curated by koebnik (20100701)
MW 14570.2 Da
SQ 129 aa
  
........10........20........30........40........50
         |         |         |         |         |
VENGESAKRPHERLEAWRDSMELVEMIYRFTDVFPEQERYGLTAQLRRAA
VSVPSNIAEGAARRSTPDYARFLSIARGSLSELDTQIQIAVRLGYSNTED
EDIVSRQVDQVFAKLTALMNALRRRGAAP

    






    

        
            
                X.species
            
                
        
NP_635908.1 lcl|XCC0516

        
1

	
128

	
S=575 I=86 E=3.13244e-63

	
hypothetical protein

     	

   





    

        
            
                X.species
            
                
        
NP_640884.1 lcl|XAC0531-XAC0531

        
1

	
103

	
S=516 I=96 E=5.39379e-56

	
hypothetical protein

     	

   





    

        
            
                X.species
            
                
        
YP_362295.1 lcl|XCV0564

        
5

	
124

	
S=365 I=57 E=1.05804e-37

	
hypothetical protein

     	

   





    

        
                pubmed
        
        

        
14

	
125

	
S=265 I=49 E=3.77837e-24

	
S23 ribosomal protein

	
Pubmed 19643902

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
14

	
95

	
S=201 I=46 E=2.28335e-16

	
Predicted 23s rRNA protein

	
Pubmed 15997700

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
12

	
128

	
S=177 I=35 E=1.69333e-13

	
S23 ribosomal protein

	
Pubmed 11598064,16484211

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
9

	
95

	
S=152 I=39 E=1.9251e-10

	
Putative uncharacterized protein

	
Pubmed 8341711

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
12

	
97

	
S=147 I=35 E=7.11915e-10

	
23Sr RNA gene

	
Pubmed 7751314

    

    

         
        
prodomImg

    





    

        Iprscan
        
	[PF05635]
	
10

	
117

	
	
-

    





    

        
            
                
            
                
        
PD009221

        
9

	
66

	
S=180 I=55 E=2.60371e-14

    	
    





    

        
            
                
            
                
        
PDA1G770

        
68

	
123

	
S=127 I=43 E=6.64292e-08

    	
    





    

        
            
                
            
                
        
PD954966

        
45

	
94

	
S=105 I=52 E=3.2136e-05

    	
    




Show or not Suggestions
Suggest an annotation


Move your mouse over each field to get more informations


ID


DE


EC


GO


PM



CC


CL

 
  Your email  
 
  Validation code (copy this one wKqdsY0z)  
 
     



Show or not Access unfiltered results






    

       
            
                pubmed
            
        
	    
            
Set of Uniprot with relevant PubMed cross-references ncbi-blastp

        		
 	    
            7 hits
        
    

    

        
            
                swiss-prot
            
        
	    
            
Swiss-Prot ncbi-blastp

        		
 	    
            0 hits
        
    

    
    
    

        
            
                XFF4834R
            
        
    	
            
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp

        		        
        
            1 hits
        
    

        
    

        
            
                hamap
            
        
	
            
HAMAP scan

        		        
        
            0 hits
        
    

    
    

	    
            
                Interpro Scan
            
            
	        
                
IprScan

            		        
            
                1 hits
            
    








Show or not Miscellaneous analyses




    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetLocalBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBGMkAow/XFF4834R_chr05290.xml_fasta", "https://iant.toulouse.inra.fr/bacteria/annotation/web/img/XFF4834R.png"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    
    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetNcbiBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBGMkAow/XFF4834R_chr05290.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetUniprotBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBGMkAow/XFF4834R_chr05290.xml_fasta"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetKeggBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBGMkAow/XFF4834R_chr05290.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    

    






mraW XFF4834R_chr07760




    

         
             
            XFF4834R_chr07750
            
XFF4834R_chr07750
            
        		


       
           
	   Cluster
	   
DrawMap
	   
        		
	
        
            XML file
        	


	    FASTA file
        		
	
	
             
            Extract
Sequence
            
        		
	
	
             
            Codon
Usage
            
        		
    
    
            
            Framed
            
     
  	



	
            OrthoMCL
            
    
  	
    
    
    

     


	
             
            XFF4834R_chr07770
            
XFF4834R_chr07770
            
        		

    





    

        ID
        mraW
    

    

        AC
        XFF4834R_chr07760
    

    

        LT
        XFF4834R_chr07760
    

    

        OR
        XFF4834R_chr from 896110 to 897153 on strand +
    

   

        DE
        Probable S-adenosyl-L-methionine-dependent methyltransferase, MraW
  

   

        IP
        S-adenosyl-L-methionine-dependent methyltransferase, MraW
  
  
  
  

        CL
        2.2.6 rRNA, stable RNA	GO:0016072 
    

  

        EC
        
    

    
    

        GO
        
            InterPro
Molecular Function: methyltransferase activity (GO:0008168)


            Curated

        		
    


  

        PM
        
    

  

        AN
        
    

  

        CC
        COG: [M] Cell wall/membrane/envelope biogenesis; 
    

    

        CC
        MODEL: XFF4834R 
  
    
  

        CC
        STATUS: curated by opruvost (20100819)
  

  
  


    

        MW
        36954.4 Da
    


    

        SQ
        347 aa
    

    

         
        
........10........20........30........40........50
         |         |         |         |         |
MRGEAQPGHPVSQSPAAHVPVLYTQVLDGLQVTENGTYLDGTFGRGGHAR
GVLEHLGPGGRLLVMDKDPDAIAVAEHSFGGDARVSIHRGSFAGLGQVVA
AATVDGILLDLGVSSPQLDVAGRGFSFGKDGPLDMRMDPDSGQSAAEWLA
QASDREIADVLWTYGEERQSRRIARAIVARRAEQPLLRTAQLADLIASVM
PRGDSKTHPATRSFQAIRIHINRELADLEAGLDAALGALKPGGRLAVISF
HSLEDRIVKQFMARYAKAPPSNRRLPEAQPFVATLQLVSGAIKADDAELH
VNPRARSAVLRVAEKLGFGIQDSGLERRSARIPNPQSPIPASPGDAQ

    






    

        
            
                X.species
            
                
        
YP_362554.1 lcl|mraW-XCV0823

        
11

	
347

	
S=1500 I=88 E=1.22932e-174

	
S-adenosyl-methyltransferase MraW

     	

   





    

        
            
                X.species
            
                
        
NP_641124.1 lcl|mraW-XAC0772

        
11

	
346

	
S=1447 I=85 E=2.97654e-168

	
S-adenosyl-methyltransferase MraW

     	

   





    

        
            
                X.species
            
                
        
NP_636109.1 lcl|mraW-XCC0718

        
11

	
346

	
S=1395 I=82 E=5.64596e-162

	
S-adenosyl-methyltransferase MraW

     	

   





    

        
            
                X.species
            
                
        
 lcl|MraW-XALc_2821

        
1

	
329

	
S=1188 I=73 E=6.93617e-137

	
putative s-adenosyl-methyltransferase protein

     	

   





    

        
                pubmed
        
        

        
18

	
315

	
S=692 I=49 E=4.43021e-75

	
Ribosomal RNA small subunit methyltransferase H EC=2.1.1.- ; Cytoplasm rRNA processing S-adenosyl-L-methionine

	
Pubmed 2187182,1630901

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
18

	
315

	
S=692 I=49 E=4.43021e-75

	
Ribosomal RNA small subunit methyltransferase H EC=2.1.1.- ; Cytoplasm rRNA processing S-adenosyl-L-methionine

	
Pubmed 19786035

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
17

	
318

	
S=686 I=48 E=1.90008e-74

	
Ribosomal RNA small subunit methyltransferase H EC=2.1.1.- ; Cytoplasm rRNA processing S-adenosyl-L-methionine

	
Pubmed 12153713

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
9

	
317

	
S=668 I=47 E=2.9334e-72

	
Ribosomal RNA small subunit methyltransferase H EC=2.1.1.- ; Cytoplasm rRNA processing S-adenosyl-L-methionine

	
Pubmed 19447908

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
18

	
315

	
S=658 I=48 E=4.73441e-71

	
S-adenosyl-methyltransferase

	
Pubmed 20028823

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
11

	
347

	
S=1500 I=88 E=3.50748e-173

	
Ribosomal RNA small subunit methyltransferase H EC=2.1.1.- ; Cytoplasm rRNA processing S-adenosyl-L-methionine

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
11

	
347

	
S=1477 I=86 E=1.93386e-170

	
Ribosomal RNA small subunit methyltransferase H EC=2.1.1.- ; Cytoplasm rRNA processing S-adenosyl-L-methionine

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
11

	
347

	
S=1477 I=86 E=1.93386e-170

	
Ribosomal RNA small subunit methyltransferase H EC=2.1.1.- ; Cytoplasm rRNA processing S-adenosyl-L-methionine

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
11

	
347

	
S=1467 I=86 E=3.28881e-169

	
Ribosomal RNA small subunit methyltransferase H EC=2.1.1.- ; Cytoplasm rRNA processing S-adenosyl-L-methionine

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
11

	
346

	
S=1447 I=85 E=8.49263e-167

	
Ribosomal RNA small subunit methyltransferase H EC=2.1.1.- ; Cytoplasm rRNA processing S-adenosyl-L-methionine

	

    

    

         
        
prodomImg

    





    

        Iprscan
        
	[G3DSA:3.40.50.150]
	
9

	
321

	
	
-

    





    

        Iprscan
        IPR002903
	[MF_01007]
	
15

	
316

	
	
S-adenosyl-L-methionine-dependent methyltransferase, MraW

    





    

        Iprscan
        IPR002903
	[PIRSF004486]
	
13

	
318

	
	
S-adenosyl-L-methionine-dependent methyltransferase, MraW

    





    

        Iprscan
        IPR002903
	[PTHR11265]
	
33

	
318

	
	
S-adenosyl-L-methionine-dependent methyltransferase, MraW

    





    

        Iprscan
        IPR002903
	[PF01795]
	
17

	
315

	
	
S-adenosyl-L-methionine-dependent methyltransferase, MraW

    





    

        Iprscan
        IPR002903
	[TIGR00006]
	
12

	
316

	
	
S-adenosyl-L-methionine-dependent methyltransferase, MraW

    





    

        Iprscan
        
	[seg]
	
171

	
182

	
	
-

    





    

        Iprscan
        
	[seg]
	
224

	
239

	
	
-

    





    

        
            
                
            
                
        
PD579631

        
20

	
125

	
S=238 I=50 E=2.01863e-21

    	
    





    

        
            
                
            
                
        
PD663474

        
18

	
259

	
S=218 I=28 E=6.2057e-19

    	
    





    

        
            
                
            
                
        
PD004685

        
240

	
316

	
S=190 I=55 E=1.36859e-15

    	
    





    

        
            
                
            
                
        
PDA7W9R5

        
18

	
88

	
S=175 I=52 E=9.9824e-14

    	
    





    

        
            
                
            
                
        
PD681949

        
130

	
220

	
S=171 I=45 E=2.60466e-13

    	
    





    

        
            
                
            
                
        
PDA22876

        
39

	
164

	
S=148 I=34 E=2.05318e-10

    	
    





    

        
            
                
            
                
        
PDA14203

        
18

	
130

	
S=139 I=31 E=2.40005e-09

    	
    





    

        
            
                
            
                
        
PDA3L1Y2

        
317

	
347

	
S=124 I=81 E=1.56299e-07

    	
    





    

        
            
                
            
                
        
PDA4C839

        
10

	
83

	
S=115 I=40 E=1.77988e-06

    	
    





    

        
            
                
            
                
        
PD737535

        
243

	
316

	
S=109 I=35 E=1.10096e-05

    	
    





    

        Iprscan
        
	[SSF81799]
	
122

	
221

	
	
-

    





    

        Iprscan
        
	[SSF53335]
	
12

	
316

	
	
-

    




Show or not Suggestions
Suggest an annotation


Move your mouse over each field to get more informations


ID


DE


EC


GO


PM



CC


CL

 
  Your email  
 
  Validation code (copy this one nnl3waaH)  
 
     



Show or not Access unfiltered results






    

       
            
                pubmed
            
        
	    
            
Set of Uniprot with relevant PubMed cross-references ncbi-blastp

        		
 	    
            83 hits
        
    

    

        
            
                swiss-prot
            
        
	    
            
Swiss-Prot ncbi-blastp

        		
 	    
            0 hits
        
    

    
    
    

        
            
                XFF4834R
            
        
    	
            
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp

        		        
        
            0 hits
        
    

        
    

        
            
                hamap
            
        
	
            
HAMAP scan

        		        
        
            0 hits
        
    

    
    

	    
            
                Interpro Scan
            
            
	        
                
IprScan

            		        
            
                10 hits
            
    








Show or not Miscellaneous analyses




    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetLocalBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBGMkAow/XFF4834R_chr07760.xml_fasta", "https://iant.toulouse.inra.fr/bacteria/annotation/web/img/XFF4834R.png"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    
    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetNcbiBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBGMkAow/XFF4834R_chr07760.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetUniprotBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBGMkAow/XFF4834R_chr07760.xml_fasta"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetKeggBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBGMkAow/XFF4834R_chr07760.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    

    






rlmN XFF4834R_chr21190




    

         
             
            XFF4834R_chr21180
            
XFF4834R_chr21180
            
        		


       
           
	   Cluster
	   
DrawMap
	   
        		
	
        
            XML file
        	


	    FASTA file
        		
	
	
             
            Extract
Sequence
            
        		
	
	
             
            Codon
Usage
            
        		
    
    
            
            Framed
            
     
  	



	
            OrthoMCL
            
    
  	
    
    
    

     


	
             
            XFF4834R_chr21200
            
XFF4834R_chr21200
            
        		

    





    

        ID
        rlmN
    

    

        AC
        XFF4834R_chr21190
    

    

        LT
        XFF4834R_chr21190
    

    

        OR
        XFF4834R_chr from 2458899 to 2460104 on strand +
    

   

        DE
        probable ribosomal RNA large subunit methyltransferase N
  

   

        IP
        Ribosomal RNA large subunit methyltransferase RlmN;; Radical SAM
  
  
  
  

        CL
        2.2.6 rRNA, stable RNA	GO:0016072 
    

  

        EC
        
    

    
    

        GO
        
            InterPro
Biological Process: rRNA processing (GO:0006364)
Cellular Component: cytoplasm (GO:0005737)
Molecular Function: catalytic activity (GO:0003824)
Molecular Function: RNA methyltransferase activity (GO:0008173)
Molecular Function: iron-sulfur cluster binding (GO:0051536)


            Curated

        		
    


  

        PM
        
    

  

        AN
        
    

  

        CC
        COG: [R] General function prediction only; 
    

    

        CC
        MODEL: XFF4834R 
  
    
  

        CC
        STATUS: curated by pieretti (20100924)
  

  
  


    

        MW
        44914 Da
    


    

        SQ
        401 aa
    

    

         
        
........10........20........30........40........50
         |         |         |         |         |
MNEVVIPSVLQDGSVRPPEPRKQNLLDLDREGLERFFADTLGEARYRAHQ
VMKWIHHRYVTDFDQMTDLGKALRAKLHQHAEVLVPNVVFDKPSADGTHK
WLLAMGTDGKNAIETVYIPDKGRGTLCVSSQVGCGLNCTFCSTATQGFNR
NLTTAEIIGQVWVAARHLGNVPHQQRRLTNVVMMGMGEPLMNFDNVVRAM
SVMRDDLGYGLASKRVTLSTSGLVPMIDRLSTESDVSLAVSLHAANDALR
ESLVPLNKKYPIAELMESCARYLRGSKKRDSVTFEYTLMKGINDQPEHAR
QLARLMRQFDNAVQSKDAGKVNLIPFNPFPGTRYERSGETEIRAFQKILL
DAQVLTMVRRTRGDDIDAACGQLKGQVMDRTRRQAEFRRTLEGQADRDAA
A

    






    

        Hamap
        RLMN_MF_01849
	raw_score=7441 norm_score=38.867
	
Ribosomal RNA large subunit methyltransferase N [rlmN].

    





    

        
            
                X.species
            
                
        
NP_642342.1 lcl|XAC2016-XAC2016

        
1

	
401

	
S=2145 I=99 E=0

	
hypothetical protein

     	

   





    

        
            
                X.species
            
                
        
YP_363798.1 lcl|XCV2067

        
1

	
401

	
S=2131 I=99 E=0

	
radical SAM superfamily protein

     	

   





    

        
            
                X.species
            
                
        
NP_637347.1 lcl|XCC1982

        
1

	
401

	
S=2073 I=97 E=0

	
hypothetical protein

     	

   





    

        
            
                X.species
            
                
        
 lcl|XALc_1591

        
1

	
399

	
S=1913 I=88 E=0

	
conserved hypothetical protein 48

     	

   





    

        
                pubmed
        
        

        
22

	
387

	
S=1100 I=57 E=1.43476e-124

	
Ribosomal RNA large subunit methyltransferase N 2 EC=2.1.1.- ; 4Fe-4S Cytoplasm Iron Iron-sulfur Metal-binding rRNA processing S-adenosyl-L

	
Pubmed 8973346

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
22

	
395

	
S=1014 I=53 E=4.34337e-114

	
Ribosomal RNA large subunit methyltransferase N EC=2.1.1.- ; 4Fe-4S Antibiotic resistance Cytoplasm Iron Iron-sulfur Metal-binding rRNA proces

	
Pubmed 7926684

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
24

	
394

	
S=752 I=43 E=2.08696e-82

	
Predicted FeS cluster redox protein

	
Pubmed 18028413

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
42

	
373

	
S=717 I=44 E=4.25164e-78

	
Putative uncharacterized protein

	
Pubmed 14617179

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
22

	
373

	
S=704 I=41 E=1.50396e-76

	
Putative uncharacterized protein

	
Pubmed 14617179

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
19

	
373

	
S=693 I=40 E=3.68879e-75

	
Ribosomal RNA large subunit methyltransferase N EC=2.1.1.- ; 4Fe-4S Cytoplasm Iron Iron-sulfur Metal-binding rRNA processing S-adenosyl-L-methionine

	
Pubmed 17038625

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
42

	
376

	
S=626 I=38 E=4.59655e-67

	
Ribosomal RNA large subunit methyltransferase N EC=2.1.1.- ; 4Fe-4S Cytoplasm Iron Iron-sulfur Metal-binding rRNA processing S-adenosyl-L-methionine

	
Pubmed 12949193

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
42

	
375

	
S=607 I=40 E=8.23005e-65

	
Ribosomal RNA large subunit methyltransferase N EC=2.1.1.- ; 4Fe-4S Cytoplasm Iron Iron-sulfur Metal-binding rRNA processing S-adenosyl-L-methionine

	
Pubmed 18441057

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
42

	
375

	
S=605 I=40 E=1.62461e-64

	
Ribosomal RNA large subunit methyltransferase N EC=2.1.1.- ; 4Fe-4S Cytoplasm Iron Iron-sulfur Metal-binding rRNA processing S-adenosyl-L-methionine

	
Pubmed 18812508

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
42

	
375

	
S=595 I=39 E=2.64504e-63

	
Florfenicol resistance protein

	
Pubmed 12446909

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
1

	
401

	
S=2149 I=100 E=0

	
Ribosomal RNA large subunit methyltransferase N EC=2.1.1.- ; 4Fe-4S Cytoplasm Iron Iron-sulfur Metal-binding rRNA processing S-adenosyl-L-methionine

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
1

	
401

	
S=2133 I=99 E=0

	
Ribosomal RNA large subunit methyltransferase N EC=2.1.1.- ; 4Fe-4S Cytoplasm Iron Iron-sulfur Metal-binding rRNA processing S-adenosyl-L-methionine

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
1

	
401

	
S=2108 I=98 E=0

	
Ribosomal RNA large subunit methyltransferase N EC=2.1.1.- ; 4Fe-4S Cytoplasm Iron Iron-sulfur Metal-binding rRNA processing S-adenosyl-L-methionine

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
1

	
401

	
S=2108 I=98 E=0

	
Ribosomal RNA large subunit methyltransferase N EC=2.1.1.- ; 4Fe-4S Cytoplasm Iron Iron-sulfur Metal-binding rRNA processing S-adenosyl-L-methionine

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
1

	
401

	
S=2108 I=98 E=0

	
Ribosomal RNA large subunit methyltransferase N EC=2.1.1.- ; 4Fe-4S Cytoplasm Iron Iron-sulfur Metal-binding rRNA processing S-adenosyl-L-methionine

	

    

    

         
        
prodomImg

    





    

        Iprscan
        IPR004383
	[MF_01849]
	
24

	
378

	
	
Ribosomal RNA large subunit methyltransferase RlmN;

    





    

        Iprscan
        IPR004383
	[PIRSF006004]
	
9

	
389

	
	
Ribosomal RNA large subunit methyltransferase RlmN;

    





    

        Iprscan
        IPR007197
	[PF04055]
	
128

	
303

	
	
Radical SAM

    





    

        Iprscan
        IPR004383
	[TIGR00048]
	
20

	
385

	
	
Ribosomal RNA large subunit methyltransferase RlmN;

    





    

        
            
                
            
                
        
PD336815

        
134

	
205

	
S=261 I=64 E=4.01092e-24

    	
    





    

        
            
                
            
                
        
PD306250

        
46

	
133

	
S=248 I=55 E=1.28906e-22

    	
    





    

        
            
                
            
                
        
PDA1O2G6

        
134

	
217

	
S=200 I=44 E=8.73959e-17

    	
    





    

        
            
                
            
                
        
PD007453

        
323

	
388

	
S=174 I=57 E=1.47094e-13

    	
    





    

        
            
                
            
                
        
PDA1S8P9

        
1

	
40

	
S=153 I=80 E=4.29149e-11

    	
    





    

        
            
                
            
                
        
PDA9G4T2

        
128

	
373

	
S=152 I=24 E=5.82285e-11

    	
    





    

        
            
                
            
                
        
PDA1U7A3

        
376

	
401

	
S=126 I=100 E=7.54472e-08

    	
    





    

        
            
                
            
                
        
PD006794

        
266

	
307

	
S=119 I=48 E=6.55687e-07

    	
    





    

        
            
                
            
                
        
PDA1F8F4

        
236

	
265

	
S=116 I=70 E=1.568e-06

    	
    





    

        
            
                
            
                
        
PDA1K7K4

        
202

	
260

	
S=115 I=38 E=2.03677e-06

    	
    




Show or not Suggestions
Suggest an annotation


Move your mouse over each field to get more informations


ID


DE


EC


GO


PM



CC


CL

 
  Your email  
 
  Validation code (copy this one 5HyBdk6S)  
 
     



Show or not Access unfiltered results






    

       
            
                pubmed
            
        
	    
            
Set of Uniprot with relevant PubMed cross-references ncbi-blastp

        		
 	    
            37 hits
        
    

    

        
            
                swiss-prot
            
        
	    
            
Swiss-Prot ncbi-blastp

        		
 	    
            0 hits
        
    

    
    
    

        
            
                XFF4834R
            
        
    	
            
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp

        		        
        
            0 hits
        
    

        
    

        
            
                hamap
            
        
	
            
HAMAP scan

        		        
        
            1 hits
        
    

    
    

	    
            
                Interpro Scan
            
            
	        
                
IprScan

            		        
            
                4 hits
            
    








Show or not Miscellaneous analyses




    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetLocalBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBGMkAow/XFF4834R_chr21190.xml_fasta", "https://iant.toulouse.inra.fr/bacteria/annotation/web/img/XFF4834R.png"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    
    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetNcbiBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBGMkAow/XFF4834R_chr21190.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetUniprotBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBGMkAow/XFF4834R_chr21190.xml_fasta"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetKeggBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBGMkAow/XFF4834R_chr21190.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    

    






rlmL XFF4834R_chr29190




    

         
             
            XFF4834R_chr29180
            
XFF4834R_chr29180
            
        		


       
           
	   Cluster
	   
DrawMap
	   
        		
	
        
            XML file
        	


	    FASTA file
        		
	
	
             
            Extract
Sequence
            
        		
	
	
             
            Codon
Usage
            
        		
    
    
            
            Framed
            
     
  	



	
            OrthoMCL
            
    
  	
    
    
    

     


	
             
            XFF4834R_chr29200
            
XFF4834R_chr29200
            
        		

    





    

        ID
        rlmL
    

    

        AC
        XFF4834R_chr29190
    

    

        LT
        XFF4834R_chr29190
    

    

        OR
        XFF4834R_chr from 3354857 to 3356992 on strand -
    

   

        DE
        Ribosomal RNA large subunit methyltransferase L
  

   

        IP
        Putative RNA methylase; DNA methylase, N-6 adenine-specific, conserved site
  
  
  
  

        CL
        2.2.6 rRNA, stable RNA	GO:0016072 
    

  

        EC
        
    

    
    

        GO
        
            InterPro
Biological Process: methylation (GO:0032259)
Molecular Function: methyltransferase activity (GO:0008168)
Molecular Function: nucleic acid binding (GO:0003676)


            Curated

        		
    


  

        PM
        
    

  

        AN
        
    

  

        CC
        COG: [L] Replication, recombination and repair; 
    

    

        CC
        MODEL: XFF4834R 
  
    
  

        CC
        STATUS: curated by royer (20101104)
  

  
  


    

        MW
        78280.1 Da
    


    

        SQ
        711 aa
    

    

         
        
........10........20........30........40........50
         |         |         |         |         |
MKFFASCAKGLEYLLADELLALGASKATATISGVNVEGELRDAQRAVLWS
RLASRVLWPLTEFDCPDEDALYAGVAELSWDAHLSVGHTLSVDAHVSGTA
ITHARYAAQRIKDAVVDTMRRQGLERPSVDVDNPDLRLNLSLRKGRATIS
VDLGGGPLHRRGWRMAQNEAPLKENLAAAVLMRGGWPRAYADGGGLLDPM
CGSGTLLIEGALMAADVAPGLQRYGSDVPSRWRGFDRDGWQQLVGEARER
DSVGRAALKQVIHGSDMDPHAIRAAKENAQVAGVAEAIWFGVREVGELQT
PPQAAGVVVCNPPYDERLAADAALYRRLGDTLQRVVPQWRASLLCGNAEL
AYATGLRAGKKYQLFNGAIECALIVCEPIAVPRRTPLAAPTALSEGAQMV
ANRLRKNLQKFKKWRAREGIECFRAYDADLPEYSAAIDVYQQAGGDRRIF
LHVQEYAAPATIPEADVRRRLNELLAAAREVFEVPAERVALKSRERGKGG
SKYGRFEQRNEIVHVREHGALLRVNLFDYLDTGLFLDHRPLRGTMAQQCR
GRRFLNLFCYTGVASVEAAVAGAASTTSVDLSATYLQWCADNLALNGLAG
SKHKLVQADALAWLEAERAHFDVIFCDPPTFSNSARAEDFDIQREHVRLL
RAAVARLAPGGVLYFSNNFRRFKLDEDGVAEFAQCEEISPRTIDPDFERH
ARIHRAWRLTA

    






    

        
            
                XFF4834R
            
                
        
XFF4834R_chr42880 lcl|rlmI-XFF4834R_chr42880

        
515

	
663

	
S=107 I=25 E=4.22615e-06

	
23S rRNA m(5)C1962 methyltransferase, SAM-dependent

     	

   





    

        
            
                X.species
            
                
        
NP_641926.1 lcl|XAC1594-XAC1594

        
1

	
711

	
S=3305 I=89 E=0

	
23S rRNA m(2)G2445 methyltransferase

     	

   





    

        
            
                X.species
            
                
        
YP_363366.1 lcl|XCV1635

        
1

	
711

	
S=3279 I=88 E=0

	
23S rRNA m(2)G2445 methyltransferase

     	

   





    

        
            
                X.species
            
                
        
NP_636916.2 lcl|XCC1545

        
1

	
711

	
S=3216 I=86 E=0

	
23S rRNA m(2)G2445 methyltransferase

     	

   





    

        
            
                X.species
            
                
        
 lcl|XALc_1976

        
1

	
709

	
S=2551 I=68 E=0

	
putative rna methylase protein

     	

   





    

        
            
                X.species
            
                
        
NP_644658.1 lcl|XAC4364-XAC4364

        
515

	
663

	
S=104 I=24 E=3.94109e-05

	
oxidoreductase

     	

   





    

        
            
                X.species
            
                
        
YP_366207.1 lcl|XCV4476

        
515

	
632

	
S=104 I=27 E=4.45274e-05

	
hypothetical protein

     	

   





    

        
                pubmed
        
        

        
3

	
707

	
S=1266 I=41 E=2.72832e-144

	
Ribosomal RNA large subunit methyltransferase L EC=2.1.1.52 ; Cytoplasm RNA-binding rRNA processing S-adenosyl-L-methionine

	
Pubmed 16995898

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
3

	
379

	
S=374 I=30 E=3.21022e-36

	
Tou5 ; Methyltransferase

	
Pubmed 10844690

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
34

	
371

	
S=370 I=30 E=8.74948e-36

	
Putative RNA methyltransferase ypsC EC=2.1.1.-

	
Pubmed 8760912

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
3

	
379

	
S=360 I=30 E=1.30557e-34

	
Tou5 ; Methyltransferase

	
Pubmed 10844690

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
34

	
371

	
S=347 I=30 E=5.35612e-33

	
Nucleic acid methylase ; Methyltransferase

	
Pubmed 15317783

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
517

	
668

	
S=169 I=29 E=2.01537e-11

	
Putative uncharacterized protein

	
Pubmed 15882423

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
515

	
668

	
S=137 I=24 E=1.68723e-07

	
Putative uncharacterized protein

	
Pubmed 16549667

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
1

	
711

	
S=3305 I=89 E=0

	
Ribosomal RNA large subunit methyltransferase L EC=2.1.1.52 ; Cytoplasm RNA-binding rRNA processing S-adenosyl-L-methionine

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
1

	
711

	
S=3279 I=88 E=0

	
Ribosomal RNA large subunit methyltransferase L EC=2.1.1.52 ; Cytoplasm RNA-binding rRNA processing S-adenosyl-L-methionine

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
1

	
711

	
S=3248 I=87 E=0

	
Ribosomal RNA large subunit methyltransferase L EC=2.1.1.52 ; Cytoplasm RNA-binding rRNA processing S-adenosyl-L-methionine

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
1

	
711

	
S=3248 I=87 E=0

	
Ribosomal RNA large subunit methyltransferase L EC=2.1.1.52 ; Cytoplasm RNA-binding rRNA processing S-adenosyl-L-methionine

	

    

    

         
        
prodomImg

    





    

        Iprscan
        
	[G3DSA:3.40.50.150]
	
532

	
668

	
	
-

    





    

        Iprscan
        IPR017244
	[MF_01858]
	
3

	
711

	
	
S-adenosyl-L-dependent RNA methyltransferase, bacteria,

    





    

        Iprscan
        IPR017244
	[PIRSF037618]
	
1

	
711

	
	
S-adenosyl-L-dependent RNA methyltransferase, bacteria,

    





    

        Iprscan
        IPR004114
	[PF02926]
	
67

	
153

	
	
THUMP

    





    

        Iprscan
        IPR000241
	[PF01170]
	
161

	
375

	
	
Putative RNA methylase

    





    

        Iprscan
        IPR016065
	[PF03602]
	
532

	
686

	
	
Protein of unknown function methylase putative

    





    

        Iprscan
        IPR002052
	[PS00092]
	
308

	
314

	
	
DNA methylase, N-6 adenine-specific, conserved site

    





    

        Iprscan
        IPR000241
	[PS01261]
	
198

	
209

	
	
Putative RNA methylase

    





    

        Iprscan
        IPR004114
	[PS51165]
	
42

	
153

	
	
THUMP

    





    

        Iprscan
        
	[seg]
	
10

	
24

	
	
-

    





    

        Iprscan
        
	[seg]
	
317

	
328

	
	
-

    





    

        Iprscan
        
	[seg]
	
468

	
480

	
	
-

    





    

        Iprscan
        
	[seg]
	
561

	
579

	
	
-

    





    

        Iprscan
        
	[seg]
	
647

	
658

	
	
-

    





    

        
            
                
            
                
        
PD699301

        
151

	
219

	
S=223 I=62 E=2.29396e-19

    	
    





    

        
            
                
            
                
        
PDA1T5B2

        
220

	
261

	
S=205 I=93 E=3.86412e-17

    	
    





    

        
            
                
            
                
        
PD862117

        
350

	
398

	
S=201 I=78 E=1.00825e-16

    	
    





    

        
            
                
            
                
        
PDA3J1H2

        
49

	
186

	
S=142 I=25 E=1.56365e-09

    	
    





    

        
            
                
            
                
        
PD468618

        
262

	
353

	
S=134 I=34 E=1.52201e-08

    	
    





    

        
            
                
            
                
        
PDA1F8X0

        
111

	
152

	
S=128 I=52 E=8.18865e-08

    	
    





    

        
            
                
            
                
        
PD732520

        
667

	
710

	
S=126 I=47 E=1.39376e-07

    	
    





    

        
            
                
            
                
        
PD334310

        
609

	
663

	
S=121 I=41 E=5.38391e-07

    	
    





    

        
            
                
            
                
        
PD808492

        
33

	
153

	
S=117 I=24 E=1.76223e-06

    	
    





    

        
            
                
            
                
        
PD653581

        
398

	
434

	
S=112 I=73 E=6.51686e-06

    	
    




Show or not Suggestions
Suggest an annotation


Move your mouse over each field to get more informations


ID


DE


EC


GO


PM



CC


CL

 
  Your email  
 
  Validation code (copy this one B7goJu6A)  
 
     



Show or not Access unfiltered results






    

       
            
                pubmed
            
        
	    
            
Set of Uniprot with relevant PubMed cross-references ncbi-blastp

        		
 	    
            7 hits
        
    

    

        
            
                swiss-prot
            
        
	    
            
Swiss-Prot ncbi-blastp

        		
 	    
            240 hits
        
    

    
    
    

        
            
                XFF4834R
            
        
    	
            
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp

        		        
        
            1 hits
        
    

        
    

        
            
                hamap
            
        
	
            
HAMAP scan

        		        
        
            0 hits
        
    

    
    

	    
            
                Interpro Scan
            
            
	        
                
IprScan

            		        
            
                14 hits
            
    








Show or not Miscellaneous analyses




    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetLocalBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBGMkAow/XFF4834R_chr29190.xml_fasta", "https://iant.toulouse.inra.fr/bacteria/annotation/web/img/XFF4834R.png"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    
    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetNcbiBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBGMkAow/XFF4834R_chr29190.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetUniprotBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBGMkAow/XFF4834R_chr29190.xml_fasta"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetKeggBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBGMkAow/XFF4834R_chr29190.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    •