9 hits
XFF4834R_chr04900 | rppH | XFF4834R_chr04900 | RNA pyrophosphohydrolase |
XFF4834R_chr05340 | XFF4834R_chr05450074_0601861_r3_XFF4834R-XFF4834R_chr05340 | XFF4834R_chr05340 | putative extracellular ribonuclease |
XFF4834R_chr10700 | rnhA | XFF4834R_chr10700 | ribonuclease H |
XFF4834R_chr18620 | rng | XFF4834R_chr18620 | probable ribonuclease G |
XFF4834R_chr21450 | orn | XFF4834R_chr21450 | probable oligoribonuclease |
XFF4834R_chr29430 | rnt | XFF4834R_chr29430 | probable ribonuclease T (RNase T) |
XFF4834R_chr30900 | rnhB | XFF4834R_chr30900 | probable ribonuclease HII |
XFF4834R_chr31290 | XFF4834R_chr33910785_3598132_r3_XFF4834R-XFF4834R_chr31290 | XFF4834R_chr31290 | putative endoribonuclease L-PSP |
XFF4834R_chr31760 | rnc | XFF4834R_chr31760 | RNase III |
![]() XFF4834R_chr04900 |
![]() DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
![]() |
![]() |
![]() XFF4834R_chr_0540 |
ID | rppH |
AC | XFF4834R_chr04900 |
LT | XFF4834R_chr04900 |
OR | XFF4834R_chr from 553159 to 553776 on strand + |
DE | RNA pyrophosphohydrolase |
IP | NUDIX hydrolase domain; NUDIX hydrolase, conserved site |
CL | 2.2.4 RNA degradation GO:0006401 |
EC | |
GO |
InterPro Molecular Function: hydrolase activity (GO:0016787) Curated |
PM | |
AN | |
CC | COG: [LR] Replication, recombination and repair;General function prediction only; |
CC | MODEL: XFF4834R |
CC | STATUS: curated by royer (20101104) |
MW | 23674.8 Da |
SQ | 205 aa |
........10........20........30........40........50 |
![]() |
RPPH_MF_00298 | raw_score=4560 norm_score=36.554 | RNA pyrophosphohydrolase [rppH]. |
![]() |
NP_640844.1 lcl|nudH-XAC0491 |
1 |
205 |
S=1081 I=100 E=3.0857e-124 |
dinucleoside polyphosphate hydrolase |
![]() |
YP_362256.1 lcl|nudH-XCV0525 |
1 |
205 |
S=1075 I=99 E=2.06448e-123 |
dinucleoside polyphosphate hydrolase |
![]() |
NP_635872.1 lcl|nudH-XCC0480 |
1 |
205 |
S=969 I=94 E=1.40371e-110 |
dinucleoside polyphosphate hydrolase |
![]() |
1 |
205 |
S=836 I=83 E=1.51126e-94 |
probable (di)nucleoside polyphosphate hydrolase protein |
![]() |
1 |
153 |
S=512 I=61 E=1.20335e-53 |
RNA pyrophosphohydrolase EC=3.6.1.- |
Pubmed 10051655 |
|
![]() |
1 |
157 |
S=427 I=51 E=1.99605e-43 |
Nudix hydrolase |
Pubmed 16177332 |
|
![]() |
4 |
153 |
S=270 I=40 E=2.08826e-24 |
Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase EC=3.6.1.17 |
||
![]() |
4 |
153 |
S=266 I=40 E=6.15619e-24 |
AT5g06340/MHF15_14 At1g79500/T8K14_8 Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase-like protein |
Pubmed 9405937 |
|
![]() |
4 |
157 |
S=265 I=40 E=8.49987e-24 |
Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase EC=3.6.1.17 |
Pubmed 9714569 |
|
![]() |
7 |
156 |
S=253 I=34 E=3.00672e-22 |
RNA pyrophosphohydrolase EC=3.6.1.- |
Pubmed 18550617 |
|
![]() |
7 |
156 |
S=251 I=34 E=5.02918e-22 |
RNA pyrophosphohydrolase EC=3.6.1.- ; Magnesium Zinc |
Pubmed 12096117 |
|
![]() |
5 |
152 |
S=247 I=35 E=1.5897e-21 |
RNA pyrophosphohydrolase EC=3.6.1.- |
Pubmed 15780005 |
|
![]() |
7 |
144 |
S=233 I=35 E=7.49809e-20 |
Nudix hydrolase |
Pubmed 12096117 |
|
![]() |
7 |
144 |
S=229 I=35 E=2.02587e-19 |
Nudix hydrolase |
Pubmed 12096117 |
|
![]() |
1 |
205 |
S=1081 I=100 E=7.54456e-123 |
RNA pyrophosphohydrolase EC=3.6.1.- |
||
![]() |
1 |
205 |
S=1075 I=99 E=5.04768e-122 |
RNA pyrophosphohydrolase EC=3.6.1.- |
||
![]() |
1 |
205 |
S=1060 I=98 E=3.17455e-120 |
RNA pyrophosphohydrolase EC=3.6.1.- |
||
![]() |
1 |
205 |
S=1060 I=98 E=3.17455e-120 |
RNA pyrophosphohydrolase EC=3.6.1.- |
||
![]() |
1 |
205 |
S=969 I=94 E=3.43208e-109 |
RNA pyrophosphohydrolase EC=3.6.1.- |
||
![]() |
IPR000086 [G3DSA:3.90.79.10] | 3 |
155 |
NUDIX hydrolase domain |
![]() |
[PTHR22769] | 13 |
70 |
- |
![]() |
[PTHR22769] | 13 |
70 |
- |
![]() |
IPR000086 [PF00293] | 7 |
150 |
NUDIX hydrolase domain |
![]() |
IPR020084 [PS00893] | 38 |
59 |
NUDIX hydrolase, conserved site |
![]() |
91 |
158 |
S=230 I=62 E=2.17282e-20 |
![]() |
158 |
205 |
S=146 I=83 E=3.00113e-10 |
![]() |
57 |
89 |
S=105 I=61 E=3.26089e-05 |
![]() |
IPR015797 [SSF55811] | 1 |
151 |
NUDIX hydrolase domain-like |
Access unfiltered results
Miscellaneous analyses
![]() XFF4834R_chr05340 |
![]() DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
![]() |
![]() |
![]() XFF4834R_chr_0588 |
ID | XFF4834R_chr05450074_0601861_r3_XFF4834R-XFF4834R_chr05340 |
AC | XFF4834R_chr05340 |
LT | XFF4834R_chr05340 |
OR | XFF4834R_chr from 600074 to 601861 on strand - |
DE | putative extracellular ribonuclease |
IP | Endonuclease I |
CL | 2.2.4 RNA degradation GO:0006401 |
EC | |
GO |
InterPro Molecular Function: nuclease activity (GO:0004518) Curated
|
PM | |
AN | |
CC | COG: [L] Replication, recombination and repair; |
CC | MODEL: XFF4834R |
CC | STATUS: curated by royer (20100408) |
MW | 61147.3 Da |
SQ | 595 aa |
........10........20........30........40........50 |
![]() |
NP_640893.2 lcl|XAC0540-XAC0540 |
1 |
595 |
S=2782 I=90 E=0 |
ribonuclease |
![]() |
YP_362300.1 lcl|XCV0569 |
1 |
595 |
S=2775 I=90 E=0 |
putative extracellular ribonuclease |
![]() |
NP_635913.2 lcl|XCC0521 |
1 |
595 |
S=2599 I=84 E=0 |
ribonuclease |
![]() |
305 |
578 |
S=341 I=37 E=2.56321e-32 |
Extracellular ribonuclease EC=3.1.-.- ; Hydrolase Secreted Signal |
Pubmed 1396690 |
|
![]() |
305 |
578 |
S=341 I=37 E=1.76511e-32 |
Extracellular ribonuclease EC=3.1.-.- ; Hydrolase Secreted Signal |
||
![]() |
300 |
578 |
S=325 I=36 E=1.3101e-30 |
Extracellular ribonuclease EC=3.1.-.- ; Hydrolase Secreted Signal |
||
![]() |
IPR007346 [PF04231] | 321 |
576 |
Endonuclease I |
![]() |
[seg] | 39 |
55 |
- |
![]() |
[seg] | 162 |
173 |
- |
![]() |
[seg] | 193 |
206 |
- |
![]() |
[seg] | 455 |
461 |
- |
![]() |
314 |
522 |
S=358 I=44 E=8.13594e-36 |
![]() |
31 |
192 |
S=306 I=45 E=1.55675e-29 |
![]() |
253 |
311 |
S=268 I=93 E=6.04594e-25 |
![]() |
530 |
595 |
S=250 I=70 E=1.03634e-22 |
![]() |
448 |
496 |
S=221 I=84 E=3.12824e-19 |
![]() |
497 |
529 |
S=156 I=94 E=2.84796e-11 |
![]() |
1 |
30 |
S=144 I=97 E=6.23672e-10 |
Access unfiltered results
![]() |
Set of Uniprot with relevant PubMed cross-references ncbi-blastp |
1 hits |
![]() |
Swiss-Prot ncbi-blastp |
2 hits |
![]() |
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp |
0 hits |
![]() |
HAMAP scan |
0 hits |
![]() |
IprScan |
0 hits |
Miscellaneous analyses
![]() XFF4834R_chr10690 |
![]() DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
![]() |
![]() |
![]() XFF4834R_chr10710 |
ID | rnhA |
AC | XFF4834R_chr10700 |
LT | XFF4834R_chr10700 |
OR | XFF4834R_chr from 1210112 to 1210564 on strand + |
DE | ribonuclease H |
IP | Ribonuclease H |
CL | 2.2.4 RNA degradation GO:0006401 |
EC | |
GO |
InterPro Molecular Function: ribonuclease H activity (GO:0004523) Molecular Function: nucleic acid binding (GO:0003676) Curated |
PM | |
AN | |
CC | COG: [L] Replication, recombination and repair; |
CC | MODEL: XFF4834R |
CC | STATUS: curated by royer (20101103) |
MW | 16825.9 Da |
SQ | 150 aa |
........10........20........30........40........50 |
![]() |
RNH_MF_00042 | raw_score=4602 norm_score=35.855 | Ribonuclease H [rnhA]. |
![]() |
NP_641428.1 lcl|rnhA-XAC1089 |
1 |
150 |
S=775 I=99 E=2.72471e-87 |
ribonuclease H |
![]() |
YP_362820.1 lcl|rnhA-XCV1089 |
1 |
150 |
S=771 I=98 E=8.2453e-87 |
ribonuclease H |
![]() |
NP_636365.1 lcl|rnhA-XCC0987 |
1 |
150 |
S=753 I=95 E=1.10719e-84 |
ribonuclease H |
![]() |
1 |
146 |
S=658 I=82 E=3.37825e-73 |
probable ribonuclease h (rnase h) protein |
![]() |
1 |
141 |
S=476 I=62 E=1.25329e-49 |
Ribonuclease HI EC=3.1.26.4 ; Cytoplasm Endonuclease Hydrolase Magnesium Metal-binding |
||
![]() |
1 |
141 |
S=467 I=61 E=1.83778e-48 |
Ribonuclease HI EC=3.1.26.4 ; Cytoplasm Endonuclease Hydrolase Magnesium Metal-binding |
Pubmed 1650910 |
|
![]() |
1 |
143 |
S=463 I=56 E=5.61004e-48 |
Ribonuclease HI |
Pubmed 11809928 |
|
![]() |
4 |
138 |
S=460 I=64 E=1.21889e-47 |
Ribonuclease H EC=3.1.26.4 ; Cytoplasm Endonuclease Hydrolase Magnesium Metal-binding |
Pubmed 18700039 |
|
![]() |
2 |
140 |
S=460 I=62 E=1.25119e-47 |
Ribonuclease H EC=3.1.26.4 ; Cytoplasm Endonuclease Hydrolase Magnesium Metal-binding |
Pubmed 12564983 |
|
![]() |
4 |
137 |
S=443 I=58 E=1.20629e-45 |
Ribonuclease H EC=3.1.26.4 ; Hydrolase |
Pubmed 18459973 |
|
![]() |
2 |
143 |
S=442 I=58 E=1.70967e-45 |
Ribonuclease H EC=3.1.26.4 ; Endonuclease Hydrolase Magnesium Metal-binding |
||
![]() |
4 |
150 |
S=412 I=55 E=8.121e-42 |
Ribonuclease H EC=3.1.26.4 ; Cytoplasm Endonuclease Hydrolase Magnesium Metal-binding |
Pubmed 8294019 |
|
![]() |
4 |
136 |
S=379 I=49 E=6.85828e-38 |
Ribonuclease H EC=3.1.26.4 ; Cytoplasm Endonuclease Hydrolase Magnesium Metal-binding |
Pubmed 17916642 |
|
![]() |
4 |
140 |
S=375 I=50 E=2.22533e-37 |
Ribonuclease H EC=3.1.26.4 ; Cytoplasm Endonuclease Hydrolase Magnesium Metal-binding |
Pubmed 15618402 |
|
![]() |
1 |
150 |
S=775 I=99 E=6.00895e-86 |
Ribonuclease H EC=3.1.26.4 ; Cytoplasm Endonuclease Hydrolase Magnesium Metal-binding |
||
![]() |
1 |
150 |
S=771 I=98 E=1.81838e-85 |
Ribonuclease H EC=3.1.26.4 ; Cytoplasm Endonuclease Hydrolase Magnesium Metal-binding |
||
![]() |
1 |
150 |
S=761 I=97 E=2.90933e-84 |
Ribonuclease H EC=3.1.26.4 ; Cytoplasm Endonuclease Hydrolase Magnesium Metal-binding |
||
![]() |
1 |
150 |
S=761 I=97 E=2.90933e-84 |
Ribonuclease H EC=3.1.26.4 ; Cytoplasm Endonuclease Hydrolase Magnesium Metal-binding |
||
![]() |
1 |
150 |
S=753 I=95 E=2.44175e-83 |
Ribonuclease H EC=3.1.26.4 ; Cytoplasm Endonuclease Hydrolase Magnesium Metal-binding |
||
![]() |
[G3DSA:3.30.420.10] | 4 |
140 |
- |
![]() |
[MF_00042] | 1 |
149 |
- |
![]() |
IPR002156 [PF00075] | 1 |
141 |
Ribonuclease H |
![]() |
IPR002156 [PS50879] | 1 |
141 |
Ribonuclease H |
![]() |
23 |
73 |
S=137 I=62 E=4.15017e-09 |
![]() |
72 |
140 |
S=128 I=39 E=4.33147e-08 |
![]() |
72 |
111 |
S=116 I=53 E=1.46684e-06 |
Access unfiltered results
Miscellaneous analyses
![]() XFF4834R_chr18610 |
![]() DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
![]() |
![]() |
![]() XFF4834R_chr18630 |
ID | rng |
AC | XFF4834R_chr18620 |
LT | XFF4834R_chr18620 |
OR | XFF4834R_chr from 2128935 to 2130434 on strand + |
DE | probable ribonuclease G |
IP | Ribonuclease E/G; Nucleic acid-binding, OB-fold-like |
CL | 2.2.4 RNA degradation GO:0006401 |
EC | |
GO |
InterPro Biological Process: RNA processing (GO:0006396) Cellular Component: cytoplasm (GO:0005737) Molecular Function: ribonuclease activity (GO:0004540) Molecular Function: RNA binding (GO:0003723) Curated |
PM | |
AN | |
CC | COG: [J] Translation, ribosomal structure and biogenesis; |
CC | MODEL: XFF4834R |
CC | STATUS: curated by cverniere (20100811) |
MW | 55754.4 Da |
SQ | 499 aa |
........10........20........30........40........50 |
![]() |
XFF4834R_chr22100 lcl|XFF4834R_chr24030710_2557369_r3_XFF4834R-XFF4834R_chr22100 |
5 |
499 |
S=611 I=33 E=2.39473e-67 |
![]() |
NP_643079.2 lcl|rng-XAC2770 |
1 |
499 |
S=2333 I=91 E=0 |
ribonuclease G |
![]() |
YP_364658.1 lcl|rng-XCV2927 |
1 |
499 |
S=2329 I=91 E=0 |
ribonuclease G |
![]() |
NP_637957.1 lcl|rng-XCC2609 |
1 |
499 |
S=2306 I=90 E=0 |
ribonuclease G |
![]() |
1 |
499 |
S=2131 I=83 E=0 |
putative ribonucleases g and e protein |
![]() |
NP_637449.1 lcl|rne-XCC2084 |
5 |
499 |
S=612 I=32 E=7.1441e-67 |
ribonuclease E |
![]() |
NP_642428.1 lcl|rne-XAC2111 |
5 |
499 |
S=611 I=33 E=8.65467e-67 |
ribonuclease E |
![]() |
YP_364154.1 lcl|rne-XCV2423 |
5 |
499 |
S=611 I=33 E=1.01253e-66 |
ribonuclease E |
![]() |
5 |
499 |
S=603 I=32 E=9.27214e-66 |
probable ribonuclease e protein |
![]() |
1 |
499 |
S=1255 I=51 E=3.60803e-143 |
Ribonuclease G EC=3.1.26.- ; Cell cycle division Cytoplasm Cytoskeleton Endonuclease Hydrolase |
Pubmed 1937035 |
|
![]() |
5 |
474 |
S=576 I=31 E=8.27068e-61 |
Cell shape determining protein homolog |
Pubmed 8320240 |
|
![]() |
5 |
478 |
S=566 I=31 E=1.12126e-59 |
Putative ribonuclease E |
Pubmed 19345289 |
|
![]() |
267 |
499 |
S=560 I=48 E=5.62613e-59 |
C-terminal reagion of putative cytoplasmic axial filament protein |
Pubmed 12406764 |
|
![]() |
258 |
499 |
S=466 I=42 E=1.67232e-47 |
Cytoplasmic axial filament protein |
Pubmed 10024565 |
|
![]() |
1 |
499 |
S=1255 I=51 E=2.45461e-143 |
Ribonuclease G EC=3.1.26.- ; Cell cycle division Cytoplasm Cytoskeleton Endonuclease Hydrolase |
||
![]() |
1 |
499 |
S=1255 I=51 E=2.45461e-143 |
Ribonuclease G EC=3.1.26.- ; Cell cycle division Cytoplasm Cytoskeleton Endonuclease Hydrolase |
||
![]() |
1 |
499 |
S=1255 I=51 E=2.45461e-143 |
Ribonuclease G EC=3.1.26.- ; Cell cycle division Cytoplasm Cytoskeleton Endonuclease Hydrolase |
||
![]() |
1 |
499 |
S=1255 I=51 E=2.45461e-143 |
Ribonuclease G EC=3.1.26.- ; Cell cycle division Cytoplasm Cytoskeleton Endonuclease Hydrolase |
||
![]() |
4 |
499 |
S=1214 I=50 E=2.69042e-138 |
Ribonuclease G EC=3.1.26.- ; Cell cycle division Cytoplasm Cytoskeleton Endonuclease Hydrolase |
||
![]() |
IPR012340 [G3DSA:2.40.50.140] | 30 |
136 |
Nucleic acid-binding, OB-fold |
![]() |
IPR019307 [PF10150] | 132 |
403 |
RNA-binding protein AU-1/Ribonuclease E/G |
![]() |
IPR003029 [PF00575] | 38 |
129 |
Ribosomal protein S1, RNA binding domain |
![]() |
[SM00316] | 37 |
130 |
- |
![]() |
IPR004659 [TIGR00757] | 13 |
436 |
Ribonuclease E/G |
![]() |
IPR003029 [PS50126] | 39 |
130 |
Ribosomal protein S1, RNA binding domain |
![]() |
[seg] | 90 |
102 |
- |
![]() |
[seg] | 335 |
350 |
- |
![]() |
[seg] | 351 |
363 |
- |
![]() |
175 |
331 |
S=401 I=45 E=5.00322e-41 |
![]() |
1 |
73 |
S=272 I=68 E=2.10073e-25 |
![]() |
424 |
496 |
S=206 I=59 E=2.44132e-17 |
![]() |
108 |
144 |
S=148 I=76 E=2.71839e-10 |
![]() |
365 |
422 |
S=140 I=52 E=1.9672e-09 |
![]() |
105 |
206 |
S=134 I=36 E=1.0492e-08 |
![]() |
304 |
333 |
S=133 I=83 E=1.6084e-08 |
![]() |
IPR016027 [SSF50249] | 39 |
136 |
Nucleic acid-binding, OB-fold-like |
Access unfiltered results
Miscellaneous analyses
![]() XFF4834R_chr21440 |
![]() DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
![]() |
![]() |
![]() XFF4834R_chr21460 |
ID | orn |
AC | XFF4834R_chr21450 |
LT | XFF4834R_chr21450 |
OR | XFF4834R_chr from 2487146 to 2487730 on strand + |
DE | probable oligoribonuclease |
IP | Polynucleotidyl transferase, ribonuclease H fold; Exonuclease, RNase T/DNA polymerase III |
CL | 2.2.4 RNA degradation GO:0006401 |
EC | |
GO |
InterPro Cellular Component: intracellular (GO:0005622) Molecular Function: nucleic acid binding (GO:0003676) Molecular Function: exonuclease activity (GO:0004527) Curated |
PM | |
AN | |
CC | COG: [A] RNA processing and modification; |
CC | MODEL: XFF4834R |
CC | STATUS: curated by lnoel (20100802) |
MW | 21929.4 Da |
SQ | 194 aa |
........10........20........30........40........50 |
![]() |
NP_642365.1 lcl|orn-XAC2039 |
1 |
192 |
S=1004 I=98 E=7.87495e-115 |
oligoribonuclease |
![]() |
YP_363931.1 lcl|orn-XCV2200 |
1 |
181 |
S=959 I=99 E=1.87536e-109 |
oligoribonuclease |
![]() |
NP_637524.1 lcl|orn-XCC2168 |
1 |
181 |
S=938 I=97 E=6.23587e-107 |
oligoribonuclease |
![]() |
1 |
186 |
S=863 I=85 E=8.54542e-98 |
probable oligoribonuclease protein |
![]() |
16 |
179 |
S=483 I=52 E=3.17829e-50 |
Putative oligoribonuclease ; Plasmid |
Pubmed 12673061 |
|
![]() |
8 |
188 |
S=439 I=49 E=7.43801e-45 |
Oligoribonuclease EC=3.1.-.- ; Cytoplasm Exonuclease Hydrolase |
Pubmed 10913103 |
|
![]() |
8 |
189 |
S=436 I=49 E=1.64448e-44 |
Oligoribonuclease EC=3.1.-.- ; Cytoplasm Exonuclease Hydrolase |
||
![]() |
1 |
178 |
S=430 I=44 E=9.24181e-44 |
Oligoribonuclease, mitochondrial EC=3.1.-.- ; Alternative splicing Exonuclease Hydrolase Manganese Mitochondrion Nucleus Phosphoprotein Transit |
Pubmed 10810093 |
|
![]() |
1 |
178 |
S=429 I=45 E=1.27602e-43 |
Oligoribonuclease, mitochondrial EC=3.1.-.- ; Exonuclease Hydrolase Manganese Mitochondrion Phosphoprotein Transit peptide |
Pubmed 17947660 |
|
![]() |
1 |
192 |
S=1004 I=98 E=2.05003e-113 |
Oligoribonuclease EC=3.1.-.- ; Cytoplasm Exonuclease Hydrolase |
||
![]() |
1 |
192 |
S=998 I=98 E=8.79237e-113 |
Oligoribonuclease EC=3.1.-.- ; Cytoplasm Exonuclease Hydrolase |
||
![]() |
1 |
192 |
S=998 I=98 E=8.79237e-113 |
Oligoribonuclease EC=3.1.-.- ; Cytoplasm Exonuclease Hydrolase |
||
![]() |
1 |
181 |
S=959 I=99 E=4.88199e-108 |
Oligoribonuclease EC=3.1.-.- ; Cytoplasm Exonuclease Hydrolase |
||
![]() |
1 |
181 |
S=938 I=97 E=1.62334e-105 |
Oligoribonuclease EC=3.1.-.- ; Cytoplasm Exonuclease Hydrolase |
||
![]() |
[G3DSA:3.30.420.10] | 2 |
185 |
- |
![]() |
[MF_00045] | 6 |
184 |
- |
![]() |
[PTHR11046] | 1 |
181 |
- |
![]() |
IPR013520 [PF00929] | 11 |
173 |
Exonuclease, RNase T/DNA polymerase III |
![]() |
IPR006055 [SM00479] | 10 |
183 |
Exonuclease |
![]() |
47 |
159 |
S=354 I=58 E=1.77067e-35 |
![]() |
11 |
46 |
S=155 I=83 E=2.70735e-11 |
![]() |
160 |
181 |
S=115 I=100 E=1.66906e-06 |
![]() |
IPR012337 [SSF53098] | 8 |
185 |
Polynucleotidyl transferase, ribonuclease H fold |
Access unfiltered results
![]() |
Set of Uniprot with relevant PubMed cross-references ncbi-blastp |
7 hits |
![]() |
Swiss-Prot ncbi-blastp |
170 hits |
![]() |
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp |
0 hits |
![]() |
HAMAP scan |
0 hits |
![]() |
IprScan |
6 hits |
Miscellaneous analyses
![]() XFF4834R_chr_3103 |
![]() DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
![]() |
![]() |
![]() XFF4834R_chr_3105 |
ID | rnt |
AC | XFF4834R_chr29430 |
LT | XFF4834R_chr29430 |
OR | XFF4834R_chr from 3378638 to 3379273 on strand + |
DE | probable ribonuclease T (RNase T) |
IP | Ribonuclease T; Exonuclease |
CL | 2.2.4 RNA degradation GO:0006401 |
EC | |
GO |
InterPro Biological Process: RNA processing (GO:0006396) Cellular Component: intracellular (GO:0005622) Molecular Function: ribonuclease activity (GO:0004540) Molecular Function: exonuclease activity (GO:0004527) Curated |
PM | |
AN | |
CC | COG: [L] Replication, recombination and repair; |
CC | MODEL: XFF4834R |
CC | STATUS: curated by pieretti (20101028) |
MW | 22911 Da |
SQ | 211 aa |
........10........20........30........40........50 |
![]() |
NP_641903.1 lcl|rnt-XAC1571 |
1 |
211 |
S=1111 I=100 E=8.74813e-128 |
ribonuclease T |
![]() |
YP_363342.1 lcl|rnt-XCV1611 |
1 |
211 |
S=1103 I=99 E=7.87253e-127 |
ribonuclease T |
![]() |
NP_636892.1 lcl|rnt-XCC1521 |
1 |
210 |
S=1078 I=97 E=8.95002e-124 |
ribonuclease T |
![]() |
1 |
208 |
S=931 I=83 E=5.22523e-106 |
probable ribonuclease t (exoribonuclease t) (rnase t) protein |
![]() |
16 |
207 |
S=520 I=53 E=1.08458e-54 |
Rnase T ; Exonuclease Hydrolase tRNA processing |
Pubmed 12065505 |
|
![]() |
16 |
207 |
S=499 I=50 E=3.93496e-52 |
Ribonuclease T EC=3.1.13.- ; Exonuclease Hydrolase tRNA processing |
Pubmed 1460056 |
|
![]() |
14 |
207 |
S=499 I=49 E=4.52402e-52 |
Ribonuclease T EC=3.1.13.- ; Exonuclease Hydrolase tRNA processing |
Pubmed 8021208 |
|
![]() |
16 |
207 |
S=452 I=46 E=1.91545e-46 |
Ribonuclease T EC=3.1.13.- ; Exonuclease Hydrolase tRNA processing |
Pubmed 17038625 |
|
![]() |
14 |
129 |
S=215 I=40 E=1.12755e-17 |
RNase T |
Pubmed 8636046 |
|
![]() |
26 |
203 |
S=110 I=30 E=5.45667e-05 |
DNA polymerase III polC-type EC=2.7.7.7 ; Antibiotic resistance Cytoplasm replication DNA-directed Exonuclease Hydrolase Nucleotidyltransferase |
||
![]() |
26 |
199 |
S=110 I=30 E=5.74972e-05 |
DNA polymerase III C ; Cytoplasm replication DNA-directed Exonuclease Hydrolase Nucleotidyltransferase |
Pubmed 12509989 |
|
![]() |
1 |
211 |
S=1111 I=100 E=2.15289e-126 |
Ribonuclease T EC=3.1.13.- ; Exonuclease Hydrolase tRNA processing |
||
![]() |
1 |
211 |
S=1103 I=99 E=1.93741e-125 |
Ribonuclease T EC=3.1.13.- ; Exonuclease Hydrolase tRNA processing |
||
![]() |
1 |
210 |
S=1078 I=97 E=2.20258e-122 |
Ribonuclease T EC=3.1.13.- ; Exonuclease Hydrolase tRNA processing |
||
![]() |
1 |
210 |
S=1078 I=97 E=2.20258e-122 |
Ribonuclease T EC=3.1.13.- ; Exonuclease Hydrolase tRNA processing |
||
![]() |
11 |
208 |
S=872 I=79 E=1.73461e-97 |
Ribonuclease T EC=3.1.13.- ; Exonuclease Hydrolase tRNA processing |
||
![]() |
[G3DSA:3.30.420.10] | 18 |
211 |
- |
![]() |
IPR013520 [PF00929] | 25 |
200 |
Exonuclease, RNase T/DNA polymerase III |
![]() |
IPR006055 [SM00479] | 24 |
209 |
Exonuclease |
![]() |
IPR005987 [TIGR01298] | 16 |
211 |
Ribonuclease T |
![]() |
133 |
211 |
S=308 I=71 E=7.1202e-30 |
![]() |
26 |
132 |
S=141 I=36 E=1.45648e-09 |
![]() |
1 |
25 |
S=133 I=100 E=1.2224e-08 |
![]() |
123 |
208 |
S=116 I=33 E=1.2527e-06 |
Access unfiltered results
![]() |
Set of Uniprot with relevant PubMed cross-references ncbi-blastp |
7 hits |
![]() |
Swiss-Prot ncbi-blastp |
82 hits |
![]() |
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp |
0 hits |
![]() |
HAMAP scan |
0 hits |
![]() |
IprScan |
4 hits |
Miscellaneous analyses
![]() XFF4834R_chr30890 |
![]() DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
![]() |
![]() |
![]() XFF4834R_chr30910 |
ID | rnhB |
AC | XFF4834R_chr30900 |
LT | XFF4834R_chr30900 |
OR | XFF4834R_chr from 3554279 to 3555025 on strand + |
DE | probable ribonuclease HII |
IP | Ribonuclease HII/HIII |
CL | 2.2.4 RNA degradation GO:0006401 |
EC | |
GO |
InterPro Molecular Function: ribonuclease H activity (GO:0004523) Molecular Function: RNA binding (GO:0003723) Curated |
PM | |
AN | |
CC | COG: [L] Replication, recombination and repair; |
CC | MODEL: XFF4834R |
CC | STATUS: curated by pieretti (20101028) |
MW | 26949.5 Da |
SQ | 248 aa |
........10........20........30........40........50 |
![]() |
RNH2_MF_00052_B | raw_score=4242 norm_score=36.762 | Ribonuclease HII [rnhB]. |
![]() |
NP_641742.1 lcl|rnhB-XAC1407 |
17 |
248 |
S=974 I=85 E=4.45885e-111 |
ribonuclease HII |
![]() |
NP_636733.1 lcl|rnhB-XCC1359 |
17 |
221 |
S=839 I=82 E=8.60955e-95 |
ribonuclease HII |
![]() |
18 |
235 |
S=712 I=70 E=2.59545e-79 |
probable ribonuclease hII (rnase hII, degrades rna of dna-rna hybrids) protein |
![]() |
YP_363195.1 lcl|rnhB-XCV1464 |
117 |
248 |
S=633 I=93 E=8.43167e-70 |
ribonuclease HII |
![]() |
35 |
222 |
S=400 I=46 E=5.14894e-40 |
Ribonuclease HII EC=3.1.26.4 ; Cytoplasm Endonuclease Hydrolase Manganese Metal-binding |
Pubmed 8917090 |
|
![]() |
35 |
221 |
S=376 I=47 E=4.91697e-37 |
Ribonuclease HII EC=3.1.26.4 ; Cytoplasm Endonuclease Hydrolase Manganese Metal-binding |
Pubmed 3316192 |
|
![]() |
36 |
221 |
S=375 I=44 E=6.72995e-37 |
Ribonuclease HII EC=3.1.26.4 ; Cytoplasm Endonuclease Hydrolase Manganese Metal-binding |
Pubmed 8917113 |
|
![]() |
36 |
221 |
S=370 I=47 E=2.40349e-36 |
Ribonuclease HII EC=3.1.26.4 ; Cytoplasm Endonuclease Hydrolase Manganese Metal-binding |
Pubmed 2676978 |
|
![]() |
69 |
217 |
S=355 I=43 E=1.43454e-34 |
Ribonuclease HII EC=3.1.26.4 ; Cytoplasm Endonuclease Hydrolase Manganese Metal-binding |
Pubmed 15637156 |
|
![]() |
68 |
218 |
S=355 I=48 E=1.66373e-34 |
Ribonuclease HII EC=3.1.26.4 ; Cytoplasm Endonuclease Hydrolase Manganese Metal-binding |
Pubmed 10086841 |
|
![]() |
67 |
218 |
S=352 I=49 E=4.04862e-34 |
Ribonuclease HII EC=3.1.26.4 ; Cytoplasm Endonuclease Hydrolase Manganese Metal-binding |
Pubmed 7896686 |
|
![]() |
69 |
217 |
S=348 I=50 E=1.02018e-33 |
Ribonuclease HII EC=3.1.26.4 ; Cytoplasm Endonuclease Hydrolase Manganese Metal-binding |
Pubmed 7499342 |
|
![]() |
36 |
219 |
S=345 I=40 E=2.92984e-33 |
Ribonuclease HII EC=3.1.26.4 ; Cytoplasm Endonuclease Hydrolase Manganese Metal-binding |
Pubmed 18550617 |
|
![]() |
30 |
217 |
S=339 I=44 E=1.44469e-32 |
Ribonuclease EC=3.1.26.- ; Endonuclease Hydrolase |
Pubmed 15003709 |
|
![]() |
1 |
248 |
S=1014 I=81 E=1.37417e-114 |
Ribonuclease HII EC=3.1.26.4 ; Cytoplasm Endonuclease Hydrolase Manganese Metal-binding |
||
![]() |
1 |
248 |
S=1013 I=81 E=1.98187e-114 |
Ribonuclease HII EC=3.1.26.4 ; Cytoplasm Endonuclease Hydrolase Manganese Metal-binding |
||
![]() |
17 |
248 |
S=974 I=85 E=1.1296e-109 |
Ribonuclease HII EC=3.1.26.4 ; Cytoplasm Endonuclease Hydrolase Manganese Metal-binding |
||
![]() |
17 |
221 |
S=839 I=82 E=2.18114e-93 |
Ribonuclease HII EC=3.1.26.4 ; Cytoplasm Endonuclease Hydrolase Manganese Metal-binding |
||
![]() |
17 |
221 |
S=839 I=82 E=2.18114e-93 |
Ribonuclease HII EC=3.1.26.4 ; Cytoplasm Endonuclease Hydrolase Manganese Metal-binding |
||
![]() |
[G3DSA:3.30.420.10] | 36 |
179 |
- |
![]() |
IPR001352 [PF01351] | 38 |
217 |
Ribonuclease HII/HIII |
![]() |
[seg] | 43 |
62 |
- |
![]() |
133 |
214 |
S=210 I=53 E=4.98299e-18 |
![]() |
215 |
248 |
S=142 I=91 E=9.11264e-10 |
![]() |
100 |
132 |
S=131 I=79 E=2.25464e-08 |
![]() |
215 |
248 |
S=114 I=76 E=2.13616e-06 |
![]() |
90 |
135 |
S=113 I=50 E=3.33231e-06 |
![]() |
1 |
36 |
S=111 I=64 E=5.24377e-06 |
Access unfiltered results
Miscellaneous analyses
![]() XFF4834R_chr31280 |
![]() DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
![]() |
![]() |
![]() XFF4834R_chr31300 |
ID | XFF4834R_chr33910785_3598132_r3_XFF4834R-XFF4834R_chr31290 |
AC | XFF4834R_chr31290 |
LT | XFF4834R_chr31290 |
OR | XFF4834R_chr from 3597785 to 3598132 on strand - |
DE | putative endoribonuclease L-PSP |
IP | Endoribonuclease L-PSP; YjgF-like protein, conserved site |
CL | 2.2.4 RNA degradation GO:0006401 |
EC | |
GO |
InterPro Curated |
PM | |
AN | |
CC | COG: [J] Translation, ribosomal structure and biogenesis; |
CC | MODEL: XFF4834R |
CC | STATUS: curated by fguerin (20100421) |
MW | 12616.3 Da |
SQ | 115 aa |
........10........20........30........40........50 |
![]() |
YP_363158.1 lcl|XCV1427 |
1 |
115 |
S=588 I=97 E=6.60729e-65 |
putative endoribonuclease L-PSP |
![]() |
NP_641706.1 lcl|XAC1371-XAC1371 |
1 |
115 |
S=588 I=97 E=6.60729e-65 |
hypothetical protein |
![]() |
NP_636699.1 lcl|XCC1325 |
1 |
115 |
S=569 I=92 E=1.22501e-62 |
hypothetical protein |
![]() |
1 |
113 |
S=436 I=71 E=1.93557e-46 |
putative endoribonuclease l-psp protein |
![]() |
2 |
113 |
S=328 I=58 E=5.82035e-32 |
Putative translational inhibitor |
Pubmed 16935252 |
|
![]() |
17 |
113 |
S=197 I=41 E=4.86634e-16 |
Hyp116 |
||
![]() |
6 |
98 |
S=140 I=37 E=3.3254e-09 |
Protein mmf1, mitochondrial ; Cytoplasm Mitochondrion Transit peptide |
Pubmed 12185840 |
|
![]() |
8 |
112 |
S=121 I=33 E=6.90535e-07 |
YjgF family regulator |
||
![]() |
2 |
108 |
S=121 I=26 E=7.66697e-07 |
Plastid-lipid associated protein |
Pubmed 16845531 |
|
![]() |
22 |
115 |
S=118 I=30 E=1.4873e-06 |
Ribonuclease UK114 EC=3.1.-.- ; Cytoplasm Endonuclease Hydrolase Nucleus Phosphoprotein |
Pubmed 8973653 |
|
![]() |
22 |
115 |
S=118 I=31 E=1.637e-06 |
Ribonuclease UK114 EC=3.1.-.- ; Acetylation Endonuclease Hydrolase Phosphoprotein |
||
![]() |
15 |
95 |
S=111 I=31 E=1.03941e-05 |
Putative ferredoxin ; Plasmid |
Pubmed 10633088 |
|
![]() |
34 |
112 |
S=110 I=35 E=1.36198e-05 |
2-aminomuconate deaminase |
||
![]() |
15 |
95 |
S=110 I=31 E=1.52544e-05 |
YjgF-like protein |
Pubmed 10550475 |
|
![]() |
1 |
115 |
S=335 I=52 E=6.28393e-33 |
UPF0076 protein HD_0322 |
||
![]() |
2 |
112 |
S=312 I=54 E=3.7803e-30 |
UPF0076 protein HI1627 |
||
![]() |
4 |
113 |
S=234 I=45 E=8.89459e-21 |
UPF0076 protein yoaB |
||
![]() |
4 |
113 |
S=234 I=45 E=8.89459e-21 |
UPF0076 protein yoaB |
||
![]() |
4 |
113 |
S=234 I=45 E=8.89459e-21 |
UPF0076 protein yoaB |
||
![]() |
27 |
113 |
S=146 I=37 E=3.42765e-10 |
![]() |
8 |
108 |
S=130 I=35 E=2.68071e-08 |
![]() |
11 |
49 |
S=102 I=46 E=6.797e-05 |