Xanthomonas fuscans subsp. fuscans

9 hits

  1. XFF4834R_chr04900rppHXFF4834R_chr04900RNA pyrophosphohydrolase
  2. XFF4834R_chr05340XFF4834R_chr05450074_0601861_r3_XFF4834R-XFF4834R_chr05340XFF4834R_chr05340putative extracellular ribonuclease
  3. XFF4834R_chr10700rnhAXFF4834R_chr10700ribonuclease H
  4. XFF4834R_chr18620rngXFF4834R_chr18620probable ribonuclease G
  5. XFF4834R_chr21450ornXFF4834R_chr21450probable oligoribonuclease
  6. XFF4834R_chr29430rntXFF4834R_chr29430probable ribonuclease T (RNase T)
  7. XFF4834R_chr30900rnhBXFF4834R_chr30900probable ribonuclease HII
  8. XFF4834R_chr31290XFF4834R_chr33910785_3598132_r3_XFF4834R-XFF4834R_chr31290XFF4834R_chr31290putative endoribonuclease L-PSP
  9. XFF4834R_chr31760rncXFF4834R_chr31760RNase III

rppH XFF4834R_chr04900
XFF4834R_chr04900
XFF4834R_chr04900 		Cluster
DrawMap 		XML file

FASTA file 		Extract
Sequence 		Codon
Usage 		Framed OrthoMCL XFF4834R_chr_0540
XFF4834R_chr_0540
ID rppH
AC XFF4834R_chr04900
LT XFF4834R_chr04900
OR XFF4834R_chr from 553159 to 553776 on strand +
DE RNA pyrophosphohydrolase
IP NUDIX hydrolase domain; NUDIX hydrolase, conserved site
CL 2.2.4 RNA degradation GO:0006401
EC
GO InterPro
Molecular Function: hydrolase activity (GO:0016787)

Curated
PM
AN
CC COG: [LR] Replication, recombination and repair;General function prediction only;
CC MODEL: XFF4834R
CC STATUS: curated by royer (20101104)
MW 23674.8 Da
SQ 205 aa
  
........10........20........30........40........50
         |         |         |         |         |
MIDPDGFRPNVGIVLMRQDGQVFWARRVRRDGWQFPQGGMNTDETPVEAM
YRELREETGLLPEHVELLGATPGWLRYRLPSRAVRRNERQVCIGQKQVWF
LLQFTGDESHLKLDHTDTPEFDHWRWVDFWYPVEHVVMFKRGVYARALRH
LAPLAQSLAGPAAVGAMPERALEAWLPGSSAAGHDSPRKRPRKRNGARAM
RINND

    






    

        Hamap
        RPPH_MF_00298
	raw_score=4560 norm_score=36.554
	
RNA pyrophosphohydrolase [rppH].

    





    

        
            
                XFF4834R
            
                
        
NP_640844.1 lcl|nudH-XAC0491

        
1

	
205

	
S=1081 I=100 E=3.0857e-124

	
dinucleoside polyphosphate hydrolase

     	

   





    

        
            
                XFF4834R
            
                
        
YP_362256.1 lcl|nudH-XCV0525

        
1

	
205

	
S=1075 I=99 E=2.06448e-123

	
dinucleoside polyphosphate hydrolase

     	

   





    

        
            
                XFF4834R
            
                
        
NP_635872.1 lcl|nudH-XCC0480

        
1

	
205

	
S=969 I=94 E=1.40371e-110

	
dinucleoside polyphosphate hydrolase

     	

   





    

        
            
                XFF4834R
            
                
        
 lcl|nudH-XALc_0294

        
1

	
205

	
S=836 I=83 E=1.51126e-94

	
probable (di)nucleoside polyphosphate hydrolase protein

     	

   





    

        
                pubmed
        
        

        
1

	
153

	
S=512 I=61 E=1.20335e-53

	
RNA pyrophosphohydrolase EC=3.6.1.-

	
Pubmed 10051655

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
1

	
157

	
S=427 I=51 E=1.99605e-43

	
Nudix hydrolase

	
Pubmed 16177332

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
4

	
153

	
S=270 I=40 E=2.08826e-24

	
Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase EC=3.6.1.17

	
Pubmed 9425114,11183782

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
4

	
153

	
S=266 I=40 E=6.15619e-24

	
AT5g06340/MHF15_14 At1g79500/T8K14_8 Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase-like protein

	
Pubmed 9405937

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
4

	
157

	
S=265 I=40 E=8.49987e-24

	
Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase EC=3.6.1.17

	
Pubmed 9714569

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
7

	
156

	
S=253 I=34 E=3.00672e-22

	
RNA pyrophosphohydrolase EC=3.6.1.-

	
Pubmed 18550617

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
7

	
156

	
S=251 I=34 E=5.02918e-22

	
RNA pyrophosphohydrolase EC=3.6.1.- ; Magnesium Zinc

	
Pubmed 12096117

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
5

	
152

	
S=247 I=35 E=1.5897e-21

	
RNA pyrophosphohydrolase EC=3.6.1.-

	
Pubmed 15780005

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
7

	
144

	
S=233 I=35 E=7.49809e-20

	
Nudix hydrolase

	
Pubmed 12096117

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
7

	
144

	
S=229 I=35 E=2.02587e-19

	
Nudix hydrolase

	
Pubmed 12096117

    

    

         
        
prodomImg

    





    

        
            
                sp_Pdown
            
        
        
sp|Q8PQ40|RPPH_XANAC

        
1

	
205

	
S=1081 I=100 E=7.54456e-123

	
RNA pyrophosphohydrolase EC=3.6.1.-

    





    

        
            
                sp_Pdown
            
        
        
sp|Q3BYA7|RPPH_XANC5

        
1

	
205

	
S=1075 I=99 E=5.04768e-122

	
RNA pyrophosphohydrolase EC=3.6.1.-

    





    

        
            
                sp_Pdown
            
        
        
sp|Q5GV68|RPPH_XANOR

        
1

	
205

	
S=1060 I=98 E=3.17455e-120

	
RNA pyrophosphohydrolase EC=3.6.1.-

    





    

        
            
                sp_Pdown
            
        
        
sp|Q2NYE5|RPPH_XANOM

        
1

	
205

	
S=1060 I=98 E=3.17455e-120

	
RNA pyrophosphohydrolase EC=3.6.1.-

    





    

        
            
                sp_Pdown
            
        
        
sp|Q8PD65|RPPH_XANCP

        
1

	
205

	
S=969 I=94 E=3.43208e-109

	
RNA pyrophosphohydrolase EC=3.6.1.-

    





    

        Iprscan
        IPR000086
	[G3DSA:3.90.79.10]
	
3

	
155

	
	
NUDIX hydrolase domain

    





    

        Iprscan
        
	[PTHR22769]
	
13

	
70

	
	
-

    





    

        Iprscan
        
	[PTHR22769]
	
13

	
70

	
	
-

    





    

        Iprscan
        IPR000086
	[PF00293]
	
7

	
150

	
	
NUDIX hydrolase domain

    





    

        Iprscan
        IPR020084
	[PS00893]
	
38

	
59

	
	
NUDIX hydrolase, conserved site

    





    

        
            
                
            
                
        
PD012460

        
91

	
158

	
S=230 I=62 E=2.17282e-20

    	
    





    

        
            
                
            
                
        
PD694138

        
158

	
205

	
S=146 I=83 E=3.00113e-10

    	
    





    

        
            
                
            
                
        
PDA150W2

        
57

	
89

	
S=105 I=61 E=3.26089e-05

    	
    





    

        Iprscan
        IPR015797
	[SSF55811]
	
1

	
151

	
	
NUDIX hydrolase domain-like

    




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ID


DE


EC


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PM



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CL

 
  Your email  
 
  Validation code (copy this one LM6T4mDg)  
 
     



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                pubmed
            
        
	    
            
Set of Uniprot with relevant PubMed cross-references ncbi-blastp

        		
 	    
            23 hits
        
    

    

        
            
                swiss-prot
            
        
	    
            
Swiss-Prot ncbi-blastp

        		
 	    
            300 hits
        
    

    
    
    

        
            
                XFF4834R
            
        
    	
            
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp

        		        
        
            0 hits
        
    

        
    

        
            
                hamap
            
        
	
            
HAMAP scan

        		        
        
            1 hits
        
    

    
    

	    
            
                Interpro Scan
            
            
	        
                
IprScan

            		        
            
                6 hits
            
    








Show or not Miscellaneous analyses




    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetLocalBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBpJyGf3/XFF4834R_chr04900.xml_fasta", "https://iant.toulouse.inra.fr/bacteria/annotation/web/img/XFF4834R.png"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    
    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetNcbiBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBpJyGf3/XFF4834R_chr04900.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetUniprotBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBpJyGf3/XFF4834R_chr04900.xml_fasta"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetKeggBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBpJyGf3/XFF4834R_chr04900.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    

    






XFF4834R_chr05450074_0601861_r3_XFF4834R-XFF4834R_chr05340 XFF4834R_chr05340




    

         
             
            XFF4834R_chr05340
            
XFF4834R_chr05340
            
        		


       
           
	   Cluster
	   
DrawMap
	   
        		
	
        
            XML file
        	


	    FASTA file
        		
	
	
             
            Extract
Sequence
            
        		
	
	
             
            Codon
Usage
            
        		
    
    
            
            Framed
            
     
  	



	
            OrthoMCL
            
    
  	
    
    
    

     


	
             
            XFF4834R_chr_0588
            
XFF4834R_chr_0588
            
        		

    





    

        ID
        XFF4834R_chr05450074_0601861_r3_XFF4834R-XFF4834R_chr05340
    

    

        AC
        XFF4834R_chr05340
    

    

        LT
        XFF4834R_chr05340
    

    

        OR
        XFF4834R_chr from 600074 to 601861 on strand -
    

   

        DE
        putative extracellular ribonuclease
  

   

        IP
        Endonuclease I
  
  
  
  

        CL
        2.2.4 RNA degradation	GO:0006401 
    

  

        EC
        
    

    
    

        GO
        
            InterPro
Molecular Function: nuclease activity (GO:0004518)


            Curated

        		
    


  

        PM
        
    

  

        AN
        
    

  

        CC
        COG: [L] Replication, recombination and repair; 
    

    

        CC
        MODEL: XFF4834R 
  
    
  

        CC
        STATUS: curated by royer (20100408)
  

  
  


    

        MW
        61147.3 Da
    


    

        SQ
        595 aa
    

    

         
        
........10........20........30........40........50
         |         |         |         |         |
MRLPSRFVSLRCTLPLACAFALGATSADAAVFINELHYDDAGASGDSGEG
VEVVATAGESLSGYRIYLYNGAAPSAAVVYANTAVPAGTVVSCGSQVRLA
TVSYASNGVQNGPNDGVALVDPNGQLVQFLSYEGAITGSGGPAAGVTSQN
LPVSESNSTAVGSSLQLTGTGSSAANFSWAGSAAQTFGACNRGQTFTGSD
GGGSTGAPTISSTTPTQGATGFPAAGDLAVGFSEAVTLGSGAFALSCASS
GNVALTYPTSGTRFTLSTNTALVGGERCTLAITASAIRDASGLSPAANQS
IAFTVATASGGTGYYARVNTANASQLRCSLHATIKGHTVYPYSGSGTSTW
TILEMADEDPNNSGRILDAYRNRSYAKVSDRAGTGSGLTYNREHTWPNSL
GFGSATGDRGLPYAPYTDTHMLYLTDTSFNADRGNKPYATCTSSCGERVT
EVNDGSGGGSGRYPGNSNWVRTPDGNSGTFEVWGRRKGDMARAVMYMAIR
YDGGLDATTGQSEPDLELTDDRSKIVQTSASPAYMGLLSTLLAWHQADPP
DDAERARNEVIFSFQGNRNPFVDHPEWATASLFNSARPASCQLAN

    






    

        
            
                XFF4834R
            
                
        
NP_640893.2 lcl|XAC0540-XAC0540

        
1

	
595

	
S=2782 I=90 E=0

	
ribonuclease

     	

   





    

        
            
                XFF4834R
            
                
        
YP_362300.1 lcl|XCV0569

        
1

	
595

	
S=2775 I=90 E=0

	
putative extracellular ribonuclease

     	

   





    

        
            
                XFF4834R
            
                
        
NP_635913.2 lcl|XCC0521

        
1

	
595

	
S=2599 I=84 E=0

	
ribonuclease

     	

   





    

        
                pubmed
        
        

        
305

	
578

	
S=341 I=37 E=2.56321e-32

	
Extracellular ribonuclease EC=3.1.-.- ; Hydrolase Secreted Signal

	
Pubmed 1396690

    

    

         
        
prodomImg

    





    

        
            
                sp_Pdown
            
        
        
sp|Q03091|BSN1_BACAM

        
305

	
578

	
S=341 I=37 E=1.76511e-32

	
Extracellular ribonuclease EC=3.1.-.- ; Hydrolase Secreted Signal

    





    

        
            
                sp_Pdown
            
        
        
sp|O32150|BSN2_BACSU

        
300

	
578

	
S=325 I=36 E=1.3101e-30

	
Extracellular ribonuclease EC=3.1.-.- ; Hydrolase Secreted Signal

    





    

        Iprscan
        IPR007346
	[PF04231]
	
321

	
576

	
	
Endonuclease I

    





    

        Iprscan
        
	[seg]
	
39

	
55

	
	
-

    





    

        Iprscan
        
	[seg]
	
162

	
173

	
	
-

    





    

        Iprscan
        
	[seg]
	
193

	
206

	
	
-

    





    

        Iprscan
        
	[seg]
	
455

	
461

	
	
-

    





    

        
            
                
            
                
        
PD686330

        
314

	
522

	
S=358 I=44 E=8.13594e-36

    	
    





    

        
            
                
            
                
        
PD653035

        
31

	
192

	
S=306 I=45 E=1.55675e-29

    	
    





    

        
            
                
            
                
        
PD606878

        
253

	
311

	
S=268 I=93 E=6.04594e-25

    	
    





    

        
            
                
            
                
        
PD924553

        
530

	
595

	
S=250 I=70 E=1.03634e-22

    	
    





    

        
            
                
            
                
        
PDA21579

        
448

	
496

	
S=221 I=84 E=3.12824e-19

    	
    





    

        
            
                
            
                
        
PD918145

        
497

	
529

	
S=156 I=94 E=2.84796e-11

    	
    





    

        
            
                
            
                
        
PDA5R0L0

        
1

	
30

	
S=144 I=97 E=6.23672e-10

    	
    




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ID


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CL

 
  Your email  
 
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Show or not Access unfiltered results






    

       
            
                pubmed
            
        
	    
            
Set of Uniprot with relevant PubMed cross-references ncbi-blastp

        		
 	    
            1 hits
        
    

    

        
            
                swiss-prot
            
        
	    
            
Swiss-Prot ncbi-blastp

        		
 	    
            2 hits
        
    

    
    
    

        
            
                XFF4834R
            
        
    	
            
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp

        		        
        
            0 hits
        
    

        
    

        
            
                hamap
            
        
	
            
HAMAP scan

        		        
        
            0 hits
        
    

    
    

	    
            
                Interpro Scan
            
            
	        
                
IprScan

            		        
            
                0 hits
            
    








Show or not Miscellaneous analyses




    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetLocalBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBpJyGf3/XFF4834R_chr05340.xml_fasta", "https://iant.toulouse.inra.fr/bacteria/annotation/web/img/XFF4834R.png"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    
    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetNcbiBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBpJyGf3/XFF4834R_chr05340.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetUniprotBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBpJyGf3/XFF4834R_chr05340.xml_fasta"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetKeggBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBpJyGf3/XFF4834R_chr05340.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    

    






rnhA XFF4834R_chr10700




    

         
             
            XFF4834R_chr10690
            
XFF4834R_chr10690
            
        		


       
           
	   Cluster
	   
DrawMap
	   
        		
	
        
            XML file
        	


	    FASTA file
        		
	
	
             
            Extract
Sequence
            
        		
	
	
             
            Codon
Usage
            
        		
    
    
            
            Framed
            
     
  	



	
            OrthoMCL
            
    
  	
    
    
    

     


	
             
            XFF4834R_chr10710
            
XFF4834R_chr10710
            
        		

    





    

        ID
        rnhA
    

    

        AC
        XFF4834R_chr10700
    

    

        LT
        XFF4834R_chr10700
    

    

        OR
        XFF4834R_chr from 1210112 to 1210564 on strand +
    

   

        DE
        ribonuclease H
  

   

        IP
        Ribonuclease H
  
  
  
  

        CL
        2.2.4 RNA degradation	GO:0006401 
    

  

        EC
        
    

    
    

        GO
        
            InterPro
Molecular Function: ribonuclease H activity (GO:0004523)
Molecular Function: nucleic acid binding (GO:0003676)


            Curated

        		
    


  

        PM
        
    

  

        AN
        
    

  

        CC
        COG: [L] Replication, recombination and repair; 
    

    

        CC
        MODEL: XFF4834R 
  
    
  

        CC
        STATUS: curated by royer (20101103)
  

  
  


    

        MW
        16825.9 Da
    


    

        SQ
        150 aa
    

    

         
        
........10........20........30........40........50
         |         |         |         |         |
MKSIEVHTDGSCLGNPGPGGWAALLRYNGREKELAGGEAVSTNNRMELMA
AIMALETLTEPCQIVLHTDSQYVRQGITEWMPGWVRRNWKTAGGDPVKNR
ELWERLHAATQRHRIDWRWVKGHNGDLDNERVDVLARNQAIAQRGGLATS

    






    

        Hamap
        RNH_MF_00042
	raw_score=4602 norm_score=35.855
	
Ribonuclease H [rnhA].

    





    

        
            
                XFF4834R
            
                
        
NP_641428.1 lcl|rnhA-XAC1089

        
1

	
150

	
S=775 I=99 E=2.72471e-87

	
ribonuclease H

     	

   





    

        
            
                XFF4834R
            
                
        
YP_362820.1 lcl|rnhA-XCV1089

        
1

	
150

	
S=771 I=98 E=8.2453e-87

	
ribonuclease H

     	

   





    

        
            
                XFF4834R
            
                
        
NP_636365.1 lcl|rnhA-XCC0987

        
1

	
150

	
S=753 I=95 E=1.10719e-84

	
ribonuclease H

     	

   





    

        
            
                XFF4834R
            
                
        
 lcl|rnhA-XALc_0598

        
1

	
146

	
S=658 I=82 E=3.37825e-73

	
probable ribonuclease h (rnase h) protein

     	

   





    

        
                pubmed
        
        

        
1

	
141

	
S=476 I=62 E=1.25329e-49

	
Ribonuclease HI EC=3.1.26.4 ; Cytoplasm Endonuclease Hydrolase Magnesium Metal-binding

	
Pubmed 6296074,6316347

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
1

	
141

	
S=467 I=61 E=1.83778e-48

	
Ribonuclease HI EC=3.1.26.4 ; Cytoplasm Endonuclease Hydrolase Magnesium Metal-binding

	
Pubmed 1650910

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
1

	
143

	
S=463 I=56 E=5.61004e-48

	
Ribonuclease HI

	
Pubmed 11809928

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
4

	
138

	
S=460 I=64 E=1.21889e-47

	
Ribonuclease H EC=3.1.26.4 ; Cytoplasm Endonuclease Hydrolase Magnesium Metal-binding

	
Pubmed 18700039

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
2

	
140

	
S=460 I=62 E=1.25119e-47

	
Ribonuclease H EC=3.1.26.4 ; Cytoplasm Endonuclease Hydrolase Magnesium Metal-binding

	
Pubmed 12564983

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
4

	
137

	
S=443 I=58 E=1.20629e-45

	
Ribonuclease H EC=3.1.26.4 ; Hydrolase

	
Pubmed 18459973

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
2

	
143

	
S=442 I=58 E=1.70967e-45

	
Ribonuclease H EC=3.1.26.4 ; Endonuclease Hydrolase Magnesium Metal-binding

	
Pubmed 1653414,1315754

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
4

	
150

	
S=412 I=55 E=8.121e-42

	
Ribonuclease H EC=3.1.26.4 ; Cytoplasm Endonuclease Hydrolase Magnesium Metal-binding

	
Pubmed 8294019

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
4

	
136

	
S=379 I=49 E=6.85828e-38

	
Ribonuclease H EC=3.1.26.4 ; Cytoplasm Endonuclease Hydrolase Magnesium Metal-binding

	
Pubmed 17916642

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
4

	
140

	
S=375 I=50 E=2.22533e-37

	
Ribonuclease H EC=3.1.26.4 ; Cytoplasm Endonuclease Hydrolase Magnesium Metal-binding

	
Pubmed 15618402

    

    

         
        
prodomImg

    





    

        
            
                sp_Pdown
            
        
        
sp|Q8PNH8|RNH_XANAC

        
1

	
150

	
S=775 I=99 E=6.00895e-86

	
Ribonuclease H EC=3.1.26.4 ; Cytoplasm Endonuclease Hydrolase Magnesium Metal-binding

    





    

        
            
                sp_Pdown
            
        
        
sp|Q3BWP3|RNH_XANC5

        
1

	
150

	
S=771 I=98 E=1.81838e-85

	
Ribonuclease H EC=3.1.26.4 ; Cytoplasm Endonuclease Hydrolase Magnesium Metal-binding

    





    

        
            
                sp_Pdown
            
        
        
sp|Q5H426|RNH_XANOR

        
1

	
150

	
S=761 I=97 E=2.90933e-84

	
Ribonuclease H EC=3.1.26.4 ; Cytoplasm Endonuclease Hydrolase Magnesium Metal-binding

    





    

        
            
                sp_Pdown
            
        
        
sp|Q2P6Y2|RNH_XANOM

        
1

	
150

	
S=761 I=97 E=2.90933e-84

	
Ribonuclease H EC=3.1.26.4 ; Cytoplasm Endonuclease Hydrolase Magnesium Metal-binding

    





    

        
            
                sp_Pdown
            
        
        
sp|Q8PBX8|RNH_XANCP

        
1

	
150

	
S=753 I=95 E=2.44175e-83

	
Ribonuclease H EC=3.1.26.4 ; Cytoplasm Endonuclease Hydrolase Magnesium Metal-binding

    





    

        Iprscan
        
	[G3DSA:3.30.420.10]
	
4

	
140

	
	
-

    





    

        Iprscan
        
	[MF_00042]
	
1

	
149

	
	
-

    





    

        Iprscan
        IPR002156
	[PF00075]
	
1

	
141

	
	
Ribonuclease H

    





    

        Iprscan
        IPR002156
	[PS50879]
	
1

	
141

	
	
Ribonuclease H

    





    

        
            
                
            
                
        
PD774933

        
23

	
73

	
S=137 I=62 E=4.15017e-09

    	
    





    

        
            
                
            
                
        
PD755202

        
72

	
140

	
S=128 I=39 E=4.33147e-08

    	
    





    

        
            
                
            
                
        
PD858002

        
72

	
111

	
S=116 I=53 E=1.46684e-06

    	
    




Show or not Suggestions
Suggest an annotation


Move your mouse over each field to get more informations


ID


DE


EC


GO


PM



CC


CL

 
  Your email  
 
  Validation code (copy this one fhq7oPIZ)  
 
     



Show or not Access unfiltered results






    

       
            
                pubmed
            
        
	    
            
Set of Uniprot with relevant PubMed cross-references ncbi-blastp

        		
 	    
            27 hits
        
    

    

        
            
                swiss-prot
            
        
	    
            
Swiss-Prot ncbi-blastp

        		
 	    
            322 hits
        
    

    
    
    

        
            
                XFF4834R
            
        
    	
            
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp

        		        
        
            0 hits
        
    

        
    

        
            
                hamap
            
        
	
            
HAMAP scan

        		        
        
            1 hits
        
    

    
    

	    
            
                Interpro Scan
            
            
	        
                
IprScan

            		        
            
                4 hits
            
    








Show or not Miscellaneous analyses




    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetLocalBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBpJyGf3/XFF4834R_chr10700.xml_fasta", "https://iant.toulouse.inra.fr/bacteria/annotation/web/img/XFF4834R.png"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    
    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetNcbiBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBpJyGf3/XFF4834R_chr10700.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetUniprotBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBpJyGf3/XFF4834R_chr10700.xml_fasta"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetKeggBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBpJyGf3/XFF4834R_chr10700.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    

    






rng XFF4834R_chr18620




    

         
             
            XFF4834R_chr18610
            
XFF4834R_chr18610
            
        		


       
           
	   Cluster
	   
DrawMap
	   
        		
	
        
            XML file
        	


	    FASTA file
        		
	
	
             
            Extract
Sequence
            
        		
	
	
             
            Codon
Usage
            
        		
    
    
            
            Framed
            
     
  	



	
            OrthoMCL
            
    
  	
    
    
    

     


	
             
            XFF4834R_chr18630
            
XFF4834R_chr18630
            
        		

    





    

        ID
        rng
    

    

        AC
        XFF4834R_chr18620
    

    

        LT
        XFF4834R_chr18620
    

    

        OR
        XFF4834R_chr from 2128935 to 2130434 on strand +
    

   

        DE
        probable ribonuclease G
  

   

        IP
        Ribonuclease E/G; Nucleic acid-binding, OB-fold-like
  
  
  
  

        CL
        2.2.4 RNA degradation	GO:0006401 
    

  

        EC
        
    

    
    

        GO
        
            InterPro
Biological Process: RNA processing (GO:0006396)
Cellular Component: cytoplasm (GO:0005737)
Molecular Function: ribonuclease activity (GO:0004540)
Molecular Function: RNA binding (GO:0003723)


            Curated

        		
    


  

        PM
        
    

  

        AN
        
    

  

        CC
        COG: [J] Translation, ribosomal structure and biogenesis; 
    

    

        CC
        MODEL: XFF4834R 
  
    
  

        CC
        STATUS: curated by cverniere (20100811)
  

  
  


    

        MW
        55754.4 Da
    


    

        SQ
        499 aa
    

    

         
        
........10........20........30........40........50
         |         |         |         |         |
MSEEILVNVTPRETRVAVIENGMLQELHIERGWRRGVVGNIYKGKVQRVM
PGMQAAFVEVGLERAAFLHANDVVRLAPAPASVVDTEETPIPPPPPASVP
IVELLRDGQEIVVQVVKDPIGTKGARLTTQISIPSRYLVLLPQSKVVGVS
ARIEDEAERLRLKTIVSEVSAQHGGFGYIIRTNAEGQPAEALAEDIAYLS
RVWNVVERRGREAPPCSIIYEDLSLPLRAVRDLIRRDVEKVKVDSNETFV
QLQAFVAKYMPVLAERLELYTGDRPIFDLYGVEDEIGRALNKQVPLKSGG
YLVIDQTEAMTTIDVNTGSFVGQRNLEETVFRTNLEAAQAVARQLRLRNL
GGIIIIDFIDMDDPEHRRQVLRTLEKALARDHAKTTVYEFSPLGLVEMTR
KRTVESLERQLSETCGQCGGRGTIKTAETVTYEIFREITRAVRQFDAARL
LVIASSKVVARITDEESAAVAELEEFLGKSIRFQSDDQYLQEQFDVVLL

    






    

        
            
                XFF4834R
            
                
        
XFF4834R_chr22100 lcl|XFF4834R_chr24030710_2557369_r3_XFF4834R-XFF4834R_chr22100

        
5

	
499

	
S=611 I=33 E=2.39473e-67

	

     	

   





    

        
            
                XFF4834R
            
                
        
NP_643079.2 lcl|rng-XAC2770

        
1

	
499

	
S=2333 I=91 E=0

	
ribonuclease G

     	

   





    

        
            
                XFF4834R
            
                
        
YP_364658.1 lcl|rng-XCV2927

        
1

	
499

	
S=2329 I=91 E=0

	
ribonuclease G

     	

   





    

        
            
                XFF4834R
            
                
        
NP_637957.1 lcl|rng-XCC2609

        
1

	
499

	
S=2306 I=90 E=0

	
ribonuclease G

     	

   





    

        
            
                XFF4834R
            
                
        
 lcl|CafA-XALc_2460

        
1

	
499

	
S=2131 I=83 E=0

	
putative ribonucleases g and e protein

     	

   





    

        
            
                XFF4834R
            
                
        
NP_637449.1 lcl|rne-XCC2084

        
5

	
499

	
S=612 I=32 E=7.1441e-67

	
ribonuclease E

     	

   





    

        
            
                XFF4834R
            
                
        
NP_642428.1 lcl|rne-XAC2111

        
5

	
499

	
S=611 I=33 E=8.65467e-67

	
ribonuclease E

     	

   





    

        
            
                XFF4834R
            
                
        
YP_364154.1 lcl|rne-XCV2423

        
5

	
499

	
S=611 I=33 E=1.01253e-66

	
ribonuclease E

     	

   





    

        
            
                XFF4834R
            
                
        
 lcl|rne-XALc_1617

        
5

	
499

	
S=603 I=32 E=9.27214e-66

	
probable ribonuclease e protein

     	

   





    

        
                pubmed
        
        

        
1

	
499

	
S=1255 I=51 E=3.60803e-143

	
Ribonuclease G EC=3.1.26.- ; Cell cycle division Cytoplasm Cytoskeleton Endonuclease Hydrolase

	
Pubmed 1937035

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
5

	
474

	
S=576 I=31 E=8.27068e-61

	
Cell shape determining protein homolog

	
Pubmed 8320240

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
5

	
478

	
S=566 I=31 E=1.12126e-59

	
Putative ribonuclease E

	
Pubmed 19345289

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
267

	
499

	
S=560 I=48 E=5.62613e-59

	
C-terminal reagion of putative cytoplasmic axial filament protein

	
Pubmed 12406764

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
258

	
499

	
S=466 I=42 E=1.67232e-47

	
Cytoplasmic axial filament protein

	
Pubmed 10024565

    

    

         
        
prodomImg

    





    

        
            
                sp_Pdown
            
        
        
sp|P0A9J3|RNG_SHIFL

        
1

	
499

	
S=1255 I=51 E=2.45461e-143

	
Ribonuclease G EC=3.1.26.- ; Cell cycle division Cytoplasm Cytoskeleton Endonuclease Hydrolase

    





    

        
            
                sp_Pdown
            
        
        
sp|P0A9J0|RNG_ECOLI

        
1

	
499

	
S=1255 I=51 E=2.45461e-143

	
Ribonuclease G EC=3.1.26.- ; Cell cycle division Cytoplasm Cytoskeleton Endonuclease Hydrolase

    





    

        
            
                sp_Pdown
            
        
        
sp|P0A9J1|RNG_ECOL6

        
1

	
499

	
S=1255 I=51 E=2.45461e-143

	
Ribonuclease G EC=3.1.26.- ; Cell cycle division Cytoplasm Cytoskeleton Endonuclease Hydrolase

    





    

        
            
                sp_Pdown
            
        
        
sp|P0A9J2|RNG_ECO57

        
1

	
499

	
S=1255 I=51 E=2.45461e-143

	
Ribonuclease G EC=3.1.26.- ; Cell cycle division Cytoplasm Cytoskeleton Endonuclease Hydrolase

    





    

        
            
                sp_Pdown
            
        
        
sp|P45175|RNG_HAEIN

        
4

	
499

	
S=1214 I=50 E=2.69042e-138

	
Ribonuclease G EC=3.1.26.- ; Cell cycle division Cytoplasm Cytoskeleton Endonuclease Hydrolase

    





    

        Iprscan
        IPR012340
	[G3DSA:2.40.50.140]
	
30

	
136

	
	
Nucleic acid-binding, OB-fold

    





    

        Iprscan
        IPR019307
	[PF10150]
	
132

	
403

	
	
RNA-binding protein AU-1/Ribonuclease E/G

    





    

        Iprscan
        IPR003029
	[PF00575]
	
38

	
129

	
	
Ribosomal protein S1, RNA binding domain

    





    

        Iprscan
        
	[SM00316]
	
37

	
130

	
	
-

    





    

        Iprscan
        IPR004659
	[TIGR00757]
	
13

	
436

	
	
Ribonuclease E/G

    





    

        Iprscan
        IPR003029
	[PS50126]
	
39

	
130

	
	
Ribosomal protein S1, RNA binding domain

    





    

        Iprscan
        
	[seg]
	
90

	
102

	
	
-

    





    

        Iprscan
        
	[seg]
	
335

	
350

	
	
-

    





    

        Iprscan
        
	[seg]
	
351

	
363

	
	
-

    





    

        
            
                
            
                
        
PD007819

        
175

	
331

	
S=401 I=45 E=5.00322e-41

    	
    





    

        
            
                
            
                
        
PD383053

        
1

	
73

	
S=272 I=68 E=2.10073e-25

    	
    





    

        
            
                
            
                
        
PD716082

        
424

	
496

	
S=206 I=59 E=2.44132e-17

    	
    





    

        
            
                
            
                
        
PDA1F6X7

        
108

	
144

	
S=148 I=76 E=2.71839e-10

    	
    





    

        
            
                
            
                
        
PDA1E5K4

        
365

	
422

	
S=140 I=52 E=1.9672e-09

    	
    





    

        
            
                
            
                
        
PDA1W183

        
105

	
206

	
S=134 I=36 E=1.0492e-08

    	
    





    

        
            
                
            
                
        
PDA1G271

        
304

	
333

	
S=133 I=83 E=1.6084e-08

    	
    





    

        Iprscan
        IPR016027
	[SSF50249]
	
39

	
136

	
	
Nucleic acid-binding, OB-fold-like

    




Show or not Suggestions
Suggest an annotation


Move your mouse over each field to get more informations


ID


DE


EC


GO


PM



CC


CL

 
  Your email  
 
  Validation code (copy this one PRiW1VUD)  
 
     



Show or not Access unfiltered results






    

       
            
                pubmed
            
        
	    
            
Set of Uniprot with relevant PubMed cross-references ncbi-blastp

        		
 	    
            10 hits
        
    

    

        
            
                swiss-prot
            
        
	    
            
Swiss-Prot ncbi-blastp

        		
 	    
            14 hits
        
    

    
    
    

        
            
                XFF4834R
            
        
    	
            
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp

        		        
        
            1 hits
        
    

        
    

        
            
                hamap
            
        
	
            
HAMAP scan

        		        
        
            0 hits
        
    

    
    

	    
            
                Interpro Scan
            
            
	        
                
IprScan

            		        
            
                10 hits
            
    








Show or not Miscellaneous analyses




    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetLocalBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBpJyGf3/XFF4834R_chr18620.xml_fasta", "https://iant.toulouse.inra.fr/bacteria/annotation/web/img/XFF4834R.png"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    
    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetNcbiBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBpJyGf3/XFF4834R_chr18620.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetUniprotBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBpJyGf3/XFF4834R_chr18620.xml_fasta"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetKeggBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBpJyGf3/XFF4834R_chr18620.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    

    






orn XFF4834R_chr21450




    

         
             
            XFF4834R_chr21440
            
XFF4834R_chr21440
            
        		


       
           
	   Cluster
	   
DrawMap
	   
        		
	
        
            XML file
        	


	    FASTA file
        		
	
	
             
            Extract
Sequence
            
        		
	
	
             
            Codon
Usage
            
        		
    
    
            
            Framed
            
     
  	



	
            OrthoMCL
            
    
  	
    
    
    

     


	
             
            XFF4834R_chr21460
            
XFF4834R_chr21460
            
        		

    





    

        ID
        orn
    

    

        AC
        XFF4834R_chr21450
    

    

        LT
        XFF4834R_chr21450
    

    

        OR
        XFF4834R_chr from 2487146 to 2487730 on strand +
    

   

        DE
        probable oligoribonuclease
  

   

        IP
        Polynucleotidyl transferase, ribonuclease H fold; Exonuclease, RNase T/DNA polymerase III
  
  
  
  

        CL
        2.2.4 RNA degradation	GO:0006401 
    

  

        EC
        
    

    
    

        GO
        
            InterPro
Cellular Component: intracellular (GO:0005622)
Molecular Function: exonuclease activity (GO:0004527)
Molecular Function: nucleic acid binding (GO:0003676)


            Curated

        		
    


  

        PM
        
    

  

        AN
        
    

  

        CC
        COG: [A] RNA processing and modification; 
    

    

        CC
        MODEL: XFF4834R 
  
    
  

        CC
        STATUS: curated by lnoel (20100802)
  

  
  


    

        MW
        21929.4 Da
    


    

        SQ
        194 aa
    

    

         
        
........10........20........30........40........50
         |         |         |         |         |
MAENLAGNDRLIWIDLEMTGLDTDRDSIIEIATIVTDAQLNVLAEGPELA
IAHPLETLEAMDEWNRNQHRRSGLWQRVLDSQVTHAQAEAQTVAFLSEWI
RAGASPMCGNSICQDRRFLHRQMSRLERYFHYRNLDVSTIKELARRWAPT
VANGFAKSSAHTALSDVRDSIDELRHYRQFMGALGGDTQADVPA

    






    

        
            
                XFF4834R
            
                
        
NP_642365.1 lcl|orn-XAC2039

        
1

	
192

	
S=1004 I=98 E=7.87495e-115

	
oligoribonuclease

     	

   





    

        
            
                XFF4834R
            
                
        
YP_363931.1 lcl|orn-XCV2200

        
1

	
181

	
S=959 I=99 E=1.87536e-109

	
oligoribonuclease

     	

   





    

        
            
                XFF4834R
            
                
        
NP_637524.1 lcl|orn-XCC2168

        
1

	
181

	
S=938 I=97 E=6.23587e-107

	
oligoribonuclease

     	

   





    

        
            
                XFF4834R
            
                
        
 lcl|orn-XALc_1647

        
1

	
186

	
S=863 I=85 E=8.54542e-98

	
probable oligoribonuclease protein

     	

   





    

        
                pubmed
        
        

        
16

	
179

	
S=483 I=52 E=3.17829e-50

	
Putative oligoribonuclease ; Plasmid

	
Pubmed 12673061

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
8

	
188

	
S=439 I=49 E=7.43801e-45

	
Oligoribonuclease EC=3.1.-.- ; Cytoplasm Exonuclease Hydrolase

	
Pubmed 10913103

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
8

	
189

	
S=436 I=49 E=1.64448e-44

	
Oligoribonuclease EC=3.1.-.- ; Cytoplasm Exonuclease Hydrolase

	
Pubmed 10540289,10913103

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
1

	
178

	
S=430 I=44 E=9.24181e-44

	
Oligoribonuclease, mitochondrial EC=3.1.-.- ; Alternative splicing Exonuclease Hydrolase Manganese Mitochondrion Nucleus Phosphoprotein Transit

	
Pubmed 10810093

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
1

	
178

	
S=429 I=45 E=1.27602e-43

	
Oligoribonuclease, mitochondrial EC=3.1.-.- ; Exonuclease Hydrolase Manganese Mitochondrion Phosphoprotein Transit peptide

	
Pubmed 17947660

    

    

         
        
prodomImg

    





    

        
            
                sp_Pdown
            
        
        
sp|Q8PKW8|ORN_XANAC

        
1

	
192

	
S=1004 I=98 E=2.05003e-113

	
Oligoribonuclease EC=3.1.-.- ; Cytoplasm Exonuclease Hydrolase

    





    

        
            
                sp_Pdown
            
        
        
sp|Q5H0Q8|ORN_XANOR

        
1

	
192

	
S=998 I=98 E=8.79237e-113

	
Oligoribonuclease EC=3.1.-.- ; Cytoplasm Exonuclease Hydrolase

    





    

        
            
                sp_Pdown
            
        
        
sp|Q2P3P5|ORN_XANOM

        
1

	
192

	
S=998 I=98 E=8.79237e-113

	
Oligoribonuclease EC=3.1.-.- ; Cytoplasm Exonuclease Hydrolase

    





    

        
            
                sp_Pdown
            
        
        
sp|Q3BTI2|ORN_XANC5

        
1

	
181

	
S=959 I=99 E=4.88199e-108

	
Oligoribonuclease EC=3.1.-.- ; Cytoplasm Exonuclease Hydrolase

    





    

        
            
                sp_Pdown
            
        
        
sp|Q8P8S1|ORN_XANCP

        
1

	
181

	
S=938 I=97 E=1.62334e-105

	
Oligoribonuclease EC=3.1.-.- ; Cytoplasm Exonuclease Hydrolase

    





    

        Iprscan
        
	[G3DSA:3.30.420.10]
	
2

	
185

	
	
-

    





    

        Iprscan
        
	[MF_00045]
	
6

	
184

	
	
-

    





    

        Iprscan
        
	[PTHR11046]
	
1

	
181

	
	
-

    





    

        Iprscan
        IPR013520
	[PF00929]
	
11

	
173

	
	
Exonuclease, RNase T/DNA polymerase III

    





    

        Iprscan
        IPR006055
	[SM00479]
	
10

	
183

	
	
Exonuclease

    





    

        
            
                
            
                
        
PD011165

        
47

	
159

	
S=354 I=58 E=1.77067e-35

    	
    





    

        
            
                
            
                
        
PD477405

        
11

	
46

	
S=155 I=83 E=2.70735e-11

    	
    





    

        
            
                
            
                
        
PDA1T0K4

        
160

	
181

	
S=115 I=100 E=1.66906e-06

    	
    





    

        Iprscan
        IPR012337
	[SSF53098]
	
8

	
185

	
	
Polynucleotidyl transferase, ribonuclease H fold

    




Show or not Suggestions
Suggest an annotation


Move your mouse over each field to get more informations


ID


DE


EC


GO


PM



CC


CL

 
  Your email  
 
  Validation code (copy this one Szn1GVcQ)  
 
     



Show or not Access unfiltered results






    

       
            
                pubmed
            
        
	    
            
Set of Uniprot with relevant PubMed cross-references ncbi-blastp

        		
 	    
            7 hits
        
    

    

        
            
                swiss-prot
            
        
	    
            
Swiss-Prot ncbi-blastp

        		
 	    
            170 hits
        
    

    
    
    

        
            
                XFF4834R
            
        
    	
            
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp

        		        
        
            0 hits
        
    

        
    

        
            
                hamap
            
        
	
            
HAMAP scan

        		        
        
            0 hits
        
    

    
    

	    
            
                Interpro Scan
            
            
	        
                
IprScan

            		        
            
                6 hits
            
    








Show or not Miscellaneous analyses




    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetLocalBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBpJyGf3/XFF4834R_chr21450.xml_fasta", "https://iant.toulouse.inra.fr/bacteria/annotation/web/img/XFF4834R.png"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    
    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetNcbiBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBpJyGf3/XFF4834R_chr21450.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetUniprotBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBpJyGf3/XFF4834R_chr21450.xml_fasta"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetKeggBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBpJyGf3/XFF4834R_chr21450.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    

    






rnt XFF4834R_chr29430




    

         
             
            XFF4834R_chr_3103
            
XFF4834R_chr_3103
            
        		


       
           
	   Cluster
	   
DrawMap
	   
        		
	
        
            XML file
        	


	    FASTA file
        		
	
	
             
            Extract
Sequence
            
        		
	
	
             
            Codon
Usage
            
        		
    
    
            
            Framed
            
     
  	



	
            OrthoMCL
            
    
  	
    
    
    

     


	
             
            XFF4834R_chr_3105
            
XFF4834R_chr_3105
            
        		

    





    

        ID
        rnt
    

    

        AC
        XFF4834R_chr29430
    

    

        LT
        XFF4834R_chr29430
    

    

        OR
        XFF4834R_chr from 3378638 to 3379273 on strand +
    

   

        DE
        probable ribonuclease T (RNase T)
  

   

        IP
        Ribonuclease T; Exonuclease
  
  
  
  

        CL
        2.2.4 RNA degradation	GO:0006401 
    

  

        EC
        
    

    
    

        GO
        
            InterPro
Biological Process: RNA processing (GO:0006396)
Cellular Component: intracellular (GO:0005622)
Molecular Function: exonuclease activity (GO:0004527)
Molecular Function: ribonuclease activity (GO:0004540)


            Curated

        		
    


  

        PM
        
    

  

        AN
        
    

  

        CC
        COG: [L] Replication, recombination and repair; 
    

    

        CC
        MODEL: XFF4834R 
  
    
  

        CC
        STATUS: curated by pieretti (20101028)
  

  
  


    

        MW
        22910.9 Da
    


    

        SQ
        211 aa
    

    

         
        
........10........20........30........40........50
         |         |         |         |         |
MNEPVDAQPAPSFLPMSRRFRGYLPVVVDVETGGFDWNKHALLEIACVPI
EMGADGRFFPGETASAHLVPAPGLEIDPKSLEITGIVLDHPFRFAKQEKD
ALDHVFAPVRAAVKKYGCQRAILVGHNAHFDLNFLNAAVARVGHKRNPFH
PFSVFDTVTLAGVAYGQTVLARAAQAAGLDWNAADAHSAVYDTEQTARLF
CKIANAWPGPV

    





Show or not Domain decomposition
 

    

        
            
                XFF4834R
            
                
        
NP_641903.1 lcl|rnt-XAC1571

        
1

	
211

	
S=1111 I=100 E=8.74813e-128

	
ribonuclease T

     	

   





    

        
            
                XFF4834R
            
                
        
YP_363342.1 lcl|rnt-XCV1611

        
1

	
211

	
S=1103 I=99 E=7.87253e-127

	
ribonuclease T

     	

   





    

        
            
                XFF4834R
            
                
        
NP_636892.1 lcl|rnt-XCC1521

        
1

	
210

	
S=1078 I=97 E=8.95002e-124

	
ribonuclease T

     	

   





    

        
            
                XFF4834R
            
                
        
 lcl|rnt-XALc_1998

        
1

	
208

	
S=931 I=83 E=5.22523e-106

	
probable ribonuclease t (exoribonuclease t) (rnase t) protein

     	

   





    

        
                pubmed
        
        

        
16

	
207

	
S=520 I=53 E=1.08458e-54

	
Rnase T ; Exonuclease Hydrolase tRNA processing

	
Pubmed 12065505

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
16

	
207

	
S=499 I=50 E=3.93496e-52

	
Ribonuclease T EC=3.1.13.- ; Exonuclease Hydrolase tRNA processing

	
Pubmed 1460056

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
14

	
207

	
S=499 I=49 E=4.52402e-52

	
Ribonuclease T EC=3.1.13.- ; Exonuclease Hydrolase tRNA processing

	
Pubmed 8021208

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
16

	
207

	
S=452 I=46 E=1.91545e-46

	
Ribonuclease T EC=3.1.13.- ; Exonuclease Hydrolase tRNA processing

	
Pubmed 17038625

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
14

	
129

	
S=215 I=40 E=1.12755e-17

	
RNase T

	
Pubmed 8636046

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
26

	
203

	
S=110 I=30 E=5.45667e-05

	
DNA polymerase III polC-type EC=2.7.7.7 ; Antibiotic resistance Cytoplasm replication DNA-directed Exonuclease Hydrolase Nucleotidyltransferase

	
Pubmed 1901559,2499883

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
26

	
199

	
S=110 I=30 E=5.74972e-05

	
DNA polymerase III C ; Cytoplasm replication DNA-directed Exonuclease Hydrolase Nucleotidyltransferase

	
Pubmed 12509989

    

    

         
        
prodomImg

    





    

        
            
                sp_Pdown
            
        
        
sp|Q8PM62|RNT_XANAC

        
1

	
211

	
S=1111 I=100 E=2.15289e-126

	
Ribonuclease T EC=3.1.13.- ; Exonuclease Hydrolase tRNA processing

    





    

        
            
                sp_Pdown
            
        
        
sp|Q3BV71|RNT_XANC5

        
1

	
211

	
S=1103 I=99 E=1.93741e-125

	
Ribonuclease T EC=3.1.13.- ; Exonuclease Hydrolase tRNA processing

    





    

        
            
                sp_Pdown
            
        
        
sp|Q8PAG3|RNT_XANCP

        
1

	
210

	
S=1078 I=97 E=2.20258e-122

	
Ribonuclease T EC=3.1.13.- ; Exonuclease Hydrolase tRNA processing

    





    

        
            
                sp_Pdown
            
        
        
sp|Q4UT60|RNT_XANC8

        
1

	
210

	
S=1078 I=97 E=2.20258e-122

	
Ribonuclease T EC=3.1.13.- ; Exonuclease Hydrolase tRNA processing

    





    

        
            
                sp_Pdown
            
        
        
sp|Q9PBJ8|RNT_XYLFA

        
11

	
208

	
S=872 I=79 E=1.73461e-97

	
Ribonuclease T EC=3.1.13.- ; Exonuclease Hydrolase tRNA processing

    





    

        Iprscan
        
	[G3DSA:3.30.420.10]
	
18

	
211

	
	
-

    





    

        Iprscan
        IPR013520
	[PF00929]
	
25

	
200

	
	
Exonuclease, RNase T/DNA polymerase III

    





    

        Iprscan
        IPR006055
	[SM00479]
	
24

	
209

	
	
Exonuclease

    





    

        Iprscan
        IPR005987
	[TIGR01298]
	
16

	
211

	
	
Ribonuclease T

    





    

        
            
                
            
                
        
PDA1G1A2

        
133

	
211

	
S=308 I=71 E=7.1202e-30

    	
    





    

        
            
                
            
                
        
PD157099

        
26

	
132

	
S=141 I=36 E=1.45648e-09

    	
    





    

        
            
                
            
                
        
PDA1S6O0

        
1

	
25

	
S=133 I=100 E=1.2224e-08

    	
    





    

        
            
                
            
                
        
PDA26413

        
123

	
208

	
S=116 I=33 E=1.2527e-06

    	
    




Show or not Suggestions
Suggest an annotation


Move your mouse over each field to get more informations


ID


DE


EC


GO


PM



CC


CL

 
  Your email  
 
  Validation code (copy this one Efw11Ipb)  
 
     



Show or not Access unfiltered results






    

       
            
                pubmed
            
        
	    
            
Set of Uniprot with relevant PubMed cross-references ncbi-blastp

        		
 	    
            7 hits
        
    

    

        
            
                swiss-prot
            
        
	    
            
Swiss-Prot ncbi-blastp

        		
 	    
            82 hits
        
    

    
    
    

        
            
                XFF4834R
            
        
    	
            
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp

        		        
        
            0 hits
        
    

        
    

        
            
                hamap
            
        
	
            
HAMAP scan

        		        
        
            0 hits
        
    

    
    

	    
            
                Interpro Scan
            
            
	        
                
IprScan

            		        
            
                4 hits
            
    








Show or not Miscellaneous analyses




    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetLocalBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBpJyGf3/XFF4834R_chr29430.xml_fasta", "https://iant.toulouse.inra.fr/bacteria/annotation/web/img/XFF4834R.png"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    
    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetNcbiBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBpJyGf3/XFF4834R_chr29430.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetUniprotBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBpJyGf3/XFF4834R_chr29430.xml_fasta"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetKeggBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBpJyGf3/XFF4834R_chr29430.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    

    






rnhB XFF4834R_chr30900




    

         
             
            XFF4834R_chr30890
            
XFF4834R_chr30890
            
        		


       
           
	   Cluster
	   
DrawMap
	   
        		
	
        
            XML file
        	


	    FASTA file
        		
	
	
             
            Extract
Sequence
            
        		
	
	
             
            Codon
Usage
            
        		
    
    
            
            Framed
            
     
  	



	
            OrthoMCL
            
    
  	
    
    
    

     


	
             
            XFF4834R_chr30910
            
XFF4834R_chr30910
            
        		

    





    

        ID
        rnhB
    

    

        AC
        XFF4834R_chr30900
    

    

        LT
        XFF4834R_chr30900
    

    

        OR
        XFF4834R_chr from 3554279 to 3555025 on strand +
    

   

        DE
        probable ribonuclease HII
  

   

        IP
        Ribonuclease HII/HIII
  
  
  
  

        CL
        2.2.4 RNA degradation	GO:0006401 
    

  

        EC
        
    

    
    

        GO
        
            InterPro
Molecular Function: RNA binding (GO:0003723)
Molecular Function: ribonuclease H activity (GO:0004523)


            Curated

        		
    


  

        PM
        
    

  

        AN
        
    

  

        CC
        COG: [L] Replication, recombination and repair; 
    

    

        CC
        MODEL: XFF4834R 
  
    
  

        CC
        STATUS: curated by pieretti (20101028)
  

  
  


    

        MW
        26949.5 Da
    


    

        SQ
        248 aa
    

    

         
        
........10........20........30........40........50
         |         |         |         |         |
MKIIALGTQADSADAEARQSPLFDKSQIPNVESRRLIAGVDEAGRGPLAG
PVAVAAVVFDPGKPRINGLDDSKQLTAERREQLYARIVDRALAWSVVLID
SEEIDRINIYQATMLGMRRAVEGVAHVAGFARIDGNRVPKGLPCPAEALI
GGDALDRAIMAASIVAKVTRDRLMHELHARHPEYRFDQHKGYSTPVHLAA
LQTHGPCPQHRRSFAPVRLALQGREGLEPGHGTRDPEQLQVGQLVAPL

    





Show or not Domain decomposition
 

    

        Hamap
        RNH2_MF_00052_B
	raw_score=4242 norm_score=36.762
	
Ribonuclease HII [rnhB].

    





    

        
            
                XFF4834R
            
                
        
NP_641742.1 lcl|rnhB-XAC1407

        
17

	
248

	
S=974 I=85 E=4.45885e-111

	
ribonuclease HII

     	

   





    

        
            
                XFF4834R
            
                
        
NP_636733.1 lcl|rnhB-XCC1359

        
17

	
221

	
S=839 I=82 E=8.60955e-95

	
ribonuclease HII

     	

   





    

        
            
                XFF4834R
            
                
        
 lcl|rnhB-XALc_2039

        
18

	
235

	
S=712 I=70 E=2.59545e-79

	
probable ribonuclease hII (rnase hII, degrades rna of dna-rna hybrids) protein

     	

   





    

        
            
                XFF4834R
            
                
        
YP_363195.1 lcl|rnhB-XCV1464

        
117

	
248

	
S=633 I=93 E=8.43167e-70

	
ribonuclease HII

     	

   





    

        
                pubmed
        
        

        
35

	
222

	
S=400 I=46 E=5.14894e-40

	
Ribonuclease HII EC=3.1.26.4 ; Cytoplasm Endonuclease Hydrolase Manganese Metal-binding

	
Pubmed 8917090

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
35

	
221

	
S=376 I=47 E=4.91697e-37

	
Ribonuclease HII EC=3.1.26.4 ; Cytoplasm Endonuclease Hydrolase Manganese Metal-binding

	
Pubmed 3316192

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
36

	
221

	
S=375 I=44 E=6.72995e-37

	
Ribonuclease HII EC=3.1.26.4 ; Cytoplasm Endonuclease Hydrolase Manganese Metal-binding

	
Pubmed 8917113

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
36

	
221

	
S=370 I=47 E=2.40349e-36

	
Ribonuclease HII EC=3.1.26.4 ; Cytoplasm Endonuclease Hydrolase Manganese Metal-binding

	
Pubmed 2676978

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
69

	
217

	
S=355 I=43 E=1.43454e-34

	
Ribonuclease HII EC=3.1.26.4 ; Cytoplasm Endonuclease Hydrolase Manganese Metal-binding

	
Pubmed 15637156

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
68

	
218

	
S=355 I=48 E=1.66373e-34

	
Ribonuclease HII EC=3.1.26.4 ; Cytoplasm Endonuclease Hydrolase Manganese Metal-binding

	
Pubmed 10086841

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
67

	
218

	
S=352 I=49 E=4.04862e-34

	
Ribonuclease HII EC=3.1.26.4 ; Cytoplasm Endonuclease Hydrolase Manganese Metal-binding

	
Pubmed 7896686

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
69

	
217

	
S=348 I=50 E=1.02018e-33

	
Ribonuclease HII EC=3.1.26.4 ; Cytoplasm Endonuclease Hydrolase Manganese Metal-binding

	
Pubmed 7499342

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
36

	
219

	
S=345 I=40 E=2.92984e-33

	
Ribonuclease HII EC=3.1.26.4 ; Cytoplasm Endonuclease Hydrolase Manganese Metal-binding

	
Pubmed 18550617

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
30

	
217

	
S=339 I=44 E=1.44469e-32

	
Ribonuclease EC=3.1.26.- ; Endonuclease Hydrolase

	
Pubmed 15003709

    

    

         
        
prodomImg

    





    

        
            
                sp_Pdown
            
        
        
sp|Q2P4B9|RNH2_XANOM

        
1

	
248

	
S=1014 I=81 E=1.37417e-114

	
Ribonuclease HII EC=3.1.26.4 ; Cytoplasm Endonuclease Hydrolase Manganese Metal-binding

    





    

        
            
                sp_Pdown
            
        
        
sp|Q5H1F4|RNH2_XANOR

        
1

	
248

	
S=1013 I=81 E=1.98187e-114

	
Ribonuclease HII EC=3.1.26.4 ; Cytoplasm Endonuclease Hydrolase Manganese Metal-binding

    





    

        
            
                sp_Pdown
            
        
        
sp|Q8PML9|RNH2_XANAC

        
17

	
248

	
S=974 I=85 E=1.1296e-109

	
Ribonuclease HII EC=3.1.26.4 ; Cytoplasm Endonuclease Hydrolase Manganese Metal-binding

    





    

        
            
                sp_Pdown
            
        
        
sp|Q8PAW7|RNH2_XANCP

        
17

	
221

	
S=839 I=82 E=2.18114e-93

	
Ribonuclease HII EC=3.1.26.4 ; Cytoplasm Endonuclease Hydrolase Manganese Metal-binding

    





    

        
            
                sp_Pdown
            
        
        
sp|Q4USP6|RNH2_XANC8

        
17

	
221

	
S=839 I=82 E=2.18114e-93

	
Ribonuclease HII EC=3.1.26.4 ; Cytoplasm Endonuclease Hydrolase Manganese Metal-binding

    





    

        Iprscan
        
	[G3DSA:3.30.420.10]
	
36

	
179

	
	
-

    





    

        Iprscan
        IPR001352
	[PF01351]
	
38

	
217

	
	
Ribonuclease HII/HIII

    





    

        Iprscan
        
	[seg]
	
43

	
62

	
	
-

    





    

        
            
                
            
                
        
PD005501

        
133

	
214

	
S=210 I=53 E=4.98299e-18

    	
    





    

        
            
                
            
                
        
PDA7T6B3

        
215

	
248

	
S=142 I=91 E=9.11264e-10

    	
    





    

        
            
                
            
                
        
PDA1V2I1

        
100

	
132

	
S=131 I=79 E=2.25464e-08

    	
    





    

        
            
                
            
                
        
PDA7T699

        
215

	
248

	
S=114 I=76 E=2.13616e-06

    	
    





    

        
            
                
            
                
        
PDA1F7A7

        
90

	
135

	
S=113 I=50 E=3.33231e-06

    	
    





    

        
            
                
            
                
        
PDA7O451

        
1

	
36

	
S=111 I=64 E=5.24377e-06

    	
    




Show or not Suggestions
Suggest an annotation


Move your mouse over each field to get more informations


ID


DE


EC


GO


PM



CC


CL

 
  Your email  
 
  Validation code (copy this one wCnvHieR)  
 
     



Show or not Access unfiltered results






    

       
            
                pubmed
            
        
	    
            
Set of Uniprot with relevant PubMed cross-references ncbi-blastp

        		
 	    
            41 hits
        
    

    

        
            
                swiss-prot
            
        
	    
            
Swiss-Prot ncbi-blastp

        		
 	    
            593 hits
        
    

    
    
    

        
            
                XFF4834R
            
        
    	
            
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp

        		        
        
            0 hits
        
    

        
    

        
            
                hamap
            
        
	
            
HAMAP scan

        		        
        
            1 hits
        
    

    
    

	    
            
                Interpro Scan
            
            
	        
                
IprScan

            		        
            
                3 hits
            
    








Show or not Miscellaneous analyses




    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetLocalBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBpJyGf3/XFF4834R_chr30900.xml_fasta", "https://iant.toulouse.inra.fr/bacteria/annotation/web/img/XFF4834R.png"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    
    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetNcbiBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBpJyGf3/XFF4834R_chr30900.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetUniprotBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBpJyGf3/XFF4834R_chr30900.xml_fasta"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetKeggBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBpJyGf3/XFF4834R_chr30900.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    

    






XFF4834R_chr33910785_3598132_r3_XFF4834R-XFF4834R_chr31290 XFF4834R_chr31290




    

         
             
            XFF4834R_chr31280
            
XFF4834R_chr31280
            
        		


       
           
	   Cluster
	   
DrawMap
	   
        		
	
        
            XML file
        	


	    FASTA file
        		
	
	
             
            Extract
Sequence
            
        		
	
	
             
            Codon
Usage
            
        		
    
    
            
            Framed
            
     
  	



	
            OrthoMCL
            
    
  	
    
    
    

     


	
             
            XFF4834R_chr31300
            
XFF4834R_chr31300
            
        		

    





    

        ID
        XFF4834R_chr33910785_3598132_r3_XFF4834R-XFF4834R_chr31290
    

    

        AC
        XFF4834R_chr31290
    

    

        LT
        XFF4834R_chr31290
    

    

        OR
        XFF4834R_chr from 3597785 to 3598132 on strand -
    

   

        DE
        putative endoribonuclease L-PSP
  

   

        IP
        Endoribonuclease L-PSP; YjgF-like protein, conserved site
  
  
  
  

        CL
        2.2.4 RNA degradation	GO:0006401 
    

  

        EC
        
    

    
    

        GO
        
            InterPro



            Curated

        		
    


  

        PM
        
    

  

        AN
        
    

  

        CC
        COG: [J] Translation, ribosomal structure and biogenesis; 
    

    

        CC
        MODEL: XFF4834R 
  
    
  

        CC
        STATUS: curated by fguerin (20100421)
  

  
  


    

        MW
        12616.3 Da
    


    

        SQ
        115 aa
    

    

         
        
........10........20........30........40........50
         |         |         |         |         |
MLQRFDAGPRMSEMTVHAGVCYLAGQIAEDTSQDITGQTRQVLGEIDKLL
ALAASDKTKILRAEIFLADIADFDGMNKAWDEWVPHGFTPARATVEARLA
RPEWKVEIVVTAATG

    






    

        
            
                XFF4834R
            
                
        
YP_363158.1 lcl|XCV1427

        
1

	
115

	
S=588 I=97 E=6.60729e-65

	
putative endoribonuclease L-PSP

     	

   





    

        
            
                XFF4834R
            
                
        
NP_641706.1 lcl|XAC1371-XAC1371

        
1

	
115

	
S=588 I=97 E=6.60729e-65

	
hypothetical protein

     	

   





    

        
            
                XFF4834R
            
                
        
NP_636699.1 lcl|XCC1325

        
1

	
115

	
S=569 I=92 E=1.22501e-62

	
hypothetical protein

     	

   





    

        
            
                XFF4834R
            
                
        
 lcl|XALc_2502

        
1

	
113

	
S=436 I=71 E=1.93557e-46

	
putative endoribonuclease l-psp protein

     	

   





    

        
                pubmed
        
        

        
2

	
113

	
S=328 I=58 E=5.82035e-32

	
Putative translational inhibitor

	
Pubmed 16935252

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
17

	
113

	
S=197 I=41 E=4.86634e-16

	
Hyp116

	
Pubmed 11157233,11157232

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
6

	
98

	
S=140 I=37 E=3.3254e-09

	
Protein mmf1, mitochondrial ; Cytoplasm Mitochondrion Transit peptide

	
Pubmed 12185840

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
8

	
112

	
S=121 I=33 E=6.90535e-07

	
YjgF family regulator

	
Pubmed 17317567,14982786

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
2

	
108

	
S=121 I=26 E=7.66697e-07

	
Plastid-lipid associated protein

	
Pubmed 16845531

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
22

	
115

	
S=118 I=30 E=1.4873e-06

	
Ribonuclease UK114 EC=3.1.-.- ; Cytoplasm Endonuclease Hydrolase Nucleus Phosphoprotein

	
Pubmed 8973653

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
22

	
115

	
S=118 I=31 E=1.637e-06

	
Ribonuclease UK114 EC=3.1.-.- ; Acetylation Endonuclease Hydrolase Phosphoprotein

	
Pubmed 8814279,9767104

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
15

	
95

	
S=111 I=31 E=1.03941e-05

	
Putative ferredoxin ; Plasmid

	
Pubmed 10633088

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
34

	
112

	
S=110 I=35 E=1.36198e-05

	
2-aminomuconate deaminase

	
Pubmed 9791097,12823813

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
15

	
95

	
S=110 I=31 E=1.52544e-05

	
YjgF-like protein

	
Pubmed 10550475

    

    

         
        
prodomImg

    





    

        
            
                sp_Pdown
            
        
        
sp|O30825|Y322_HAEDU

        
1

	
115

	
S=335 I=52 E=6.28393e-33

	
UPF0076 protein HD_0322

    





    

        
            
                sp_Pdown
            
        
        
sp|P71394|Y1627_HAEIN

        
2

	
112

	
S=312 I=54 E=3.7803e-30

	
UPF0076 protein HI1627

    





    

        
            
                sp_Pdown
            
        
        
sp|P0AEB9|YOAB_SHIFL

        
4

	
113

	
S=234 I=45 E=8.89459e-21

	
UPF0076 protein yoaB

    





    

        
            
                sp_Pdown
            
        
        
sp|P0AEB7|YOAB_ECOLI

        
4

	
113

	
S=234 I=45 E=8.89459e-21

	
UPF0076 protein yoaB

    





    

        
            
                sp_Pdown
            
        
        
sp|P0AEB8|YOAB_ECOL6

        
4

	
113

	
S=234 I=45 E=8.89459e-21

	
UPF0076 protein yoaB

    





    

        
            
                
            
                
        
PD779675

        
27

	
113

	
S=146 I=37 E=3.42765e-10

    	
    





    

        
            
                
            
                
        
PD002429

        
8

	
108

	
S=130 I=35 E=2.68071e-08

    	
    





    

        
            
                
            
                
        
PDA19922

        
11

	
49

	
S=102 I=46 E=6.797e-05

    	
    




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