Xanthomonas fuscans subsp. fuscans

10 hits

XFF4834R_chr09710 rpoB XFF4834R_chr09710 DNA-directed RNA polymerase subunit beta
XFF4834R_chr09720 rpoC XFF4834R_chr09720 RNA polymerase, beta prime subunit
XFF4834R_chr10020 rpoA XFF4834R_chr10020 DNA-directed RNA polymerase subunit alpha
XFF4834R_chr12500 rpoZ XFF4834R_chr12500 DNA-directed RNA polymerase subunit omega
XFF4834R_chr16660 hpf XFF4834R_chr16660 probable sigma-54 modulation protein
XFF4834R_chr21580 XFF4834R_chr23500246_2502606_f1_XFF4834R-XFF4834R_chr21580 XFF4834R_chr21580 putative Tex-like transcriptional accessory protein
XFF4834R_chr27310 greB XFF4834R_chr27310 transcription elongation factor
XFF4834R_chr31340 XFF4834R_chr31340 putative 2'-5' RNA ligase
XFF4834R_chr31580 XFF4834R_chr34150806_3627828_f1_XFF4834R-XFF4834R_chr31580 XFF4834R_chr31580 putative mRNA 3'-end processing factor
XFF4834R_chr37230 rho XFF4834R_chr37230 transcription termination factor

rpoB XFF4834R_chr09710

XFF4834R_chr09720

ID	rpoB
AC	XFF4834R_chr09710
LT	XFF4834R_chr09710
OR	XFF4834R_chr from 1106593 to 1110744 on strand +
DE	DNA-directed RNA polymerase subunit beta
IP	DNA-directed RNA polymerase, beta subunit, bacterial-type
CL	2.2.2 Transcription related GO:0006350
EC
GO	InterPro Biological Process: transcription (GO:0006350) DNA-dependent (GO:0006351) Molecular Function: DNA-directed RNA polymerase activity (GO:0003899) Molecular Function: ribonucleoside binding (GO:0032549) Molecular Function: DNA binding (GO:0003677) Curated
PM
AN
CC	COG: [K] Transcription;
CC	MODEL: XFF4834R
CC	STATUS: curated by darrasse (20120316)
MW	154225 Da
SQ	1383 aa
	........10........20........30........40........50 \| \| \| \| \| MTSYSFTEKKRIRKDFGKQRSILEVPFLLAIQVDSYREFLQEDVEPNKRK DLGLHAALKSVFPISSYSGNAALEYVGYKLGQPVFDERECRQRGMSYGAP LRVTVRLVIYDRESSTKAIKYVKEQEVYLGEIPLMTGNGTFIVNGTERVI VSQLHRSPGVFFDHDRGKTHSSGKLLYSARIIPYRGSWLDFEFDPKDALF TRIDRRRKLPVSILLRALGYSNEEMLAEFFEINTFHINPDEGVQLELVPE RLRGETLNFDLADGDKVIVEAGKRITARHVKQLEAAGVAALAVPDDYLVG RILSHDVVDGSTGELLANANDEINEDQLAAFRKAGVDAVGTLWVNDLDRG PYLSNTLRIDPTKTQLEALVEIYRMMRPGEPPTKEAAQNLFHNLFFTFER YDLSTVGRMKFNRRVGRKDVLGESVLYDKKYFAERNDEESKRLVAEHADT SDILEVIKVLTEIRNGRGVVDDIDHLGNRRVRSVGEMAENVFRVGLVRVE RAVKERLSMAESEGLTPQELINAKPVAAAIKEFFGSSQLSRFMDQNNPLS EVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCTIETPEGPNIGLI NSLAVFARTNQYGFLETPYRKVLDGKVSDDVEYLSAIEENEYVIAQANAL TDAKNMLTEQFVPCRFQGESLLKPPSEVHFMDVSPMQTVSVAAALVPFLE HDDANRALMGANMQRQAVPTLRSQKPLVGTGIERAVARDSGVTVNALRGG VIEQIDAARIVVKVNEAEIGGGTDAGVDIYNLIKYTRSNQNTCINQRPLV NVGDVIARGDVLADGPSTDIGELALGQNMLIAFMPWNGYNFEDSILLSER VVEEDRYTTIHIEELTCVARDTKLGPEEISADIPNVSEQALNRLDESGVV YIGAEVRAGDIMVGKVTPKGESQLTPEEKLLRAIFGEKASDVKDSSLRVP PGMDGTVIDVQVFTRDGIEKDKRARQIEESEIKRVKKDFDDQFRILEAAI YARLRSQIVGKVANGGANLKKGDTVTDAYLDGLKKSDWFQLRMKDEDAAD AIERAQKQIQAHEKEFEARFADKRGKITQGDDLAPGVLKMVKVFLAVKRR IQPGDKMAGRHGNKGVVSNVVPVEDMPYMATGESVDIVLNPLGVPSRMNI GQILEVHLGWAAKGLGRKIQRMLEAQAAVSELRKFLNDIYNHDNAINAQR VDLSQFSDEELLNLGKNLIDGVPMATPVFDGASEAEIKRMLELADLPQSG QTQLYDGRTGEAFDRKTTVGYMHYLKLNHLVDDKMHARSTGPYSLVTQQP LGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVQGRNQMYKNI VDGEHEMVAGMPESFNVLVKEIRSLAINMELEE

Domain decomposition

NP_641312.1 lcl|rpoB-XAC0965

1383

S=7345 I=100 E=0

DNA-directed RNA polymerase subunit beta

YP_362722.1 lcl|rpoB-XCV0991

1383

S=7332 I=100 E=0

DNA-directed RNA polymerase subunit beta

NP_636274.1 lcl|rpoB-XCC0888

1383

S=7253 I=99 E=0

DNA-directed RNA polymerase subunit beta

lcl|rpoB-XALc_0507

1383

S=6943 I=94 E=0

probable dna-directed rna polymerase, beta subunit protein

[coil]

968

989

[coil]

1045

1066

[G3DSA:3.90.1100.10]

742

[G3DSA:2.40.50.100]

743

815

[G3DSA:2.40.270.10]

818

1292

IPR010243 [MF_01321]

1383

DNA-directed RNA polymerase, beta subunit, bacterial-type

[PTHR20856:SF3]

517

1381

IPR015712 [PTHR20856]

517

1381

DNA-directed RNA polymerase, subunit 2

IPR007120 [PF00562]

691

1306

DNA-directed RNA polymerase, subunit 2, domain 6

IPR007641 [PF04560]

1308

1382

RNA polymerase Rpb2, domain 7

IPR007645 [PF04565]

541

610

RNA polymerase Rpb2, domain 3

IPR007644 [PF04563]

537

RNA polymerase, beta subunit, protrusion

IPR007642 [PF04561]

157

227

RNA polymerase Rpb2, domain 2

IPR007642 [PF04561]

362

418

RNA polymerase Rpb2, domain 2

IPR007642 [PF04561]

449

482

RNA polymerase Rpb2, domain 2

IPR019462 [PF10385]

619

684

DNA-directed RNA polymerase, beta subunit, external 1 domain

IPR010243 [TIGR02013]

1381

DNA-directed RNA polymerase, beta subunit, bacterial-type

IPR007121 [PS01166]

1104

1116

RNA polymerase, beta subunit, conserved site

[SSF64484]

1382

Suggestions

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ID
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	Validation code (copy this one 7i0QKN7V)

Access unfiltered results

	Set of Uniprot with relevant PubMed cross-references ncbi-blastp	0 hits
	Swiss-Prot ncbi-blastp	0 hits
	Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp	0 hits
	HAMAP scan	0 hits
	IprScan	19 hits

Miscellaneous analyses

ERROR Tag PERLLIB Portal/Tools.pl GetLocalBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBnS5fOX/XFF4834R_chr09710.xml_fasta", "https://iant.toulouse.inra.fr/bacteria/annotation/web/img/XFF4834R.png"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

ERROR Tag PERLLIB Portal/Tools.pl GetNcbiBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBnS5fOX/XFF4834R_chr09710.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

ERROR Tag PERLLIB Portal/Tools.pl GetUniprotBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBnS5fOX/XFF4834R_chr09710.xml_fasta"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

ERROR Tag PERLLIB Portal/Tools.pl GetKeggBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBnS5fOX/XFF4834R_chr09710.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

rpoC XFF4834R_chr09720

ID	rpoC
AC	XFF4834R_chr09720
LT	XFF4834R_chr09720
OR	XFF4834R_chr from 1110895 to 1115109 on strand +
DE	RNA polymerase, beta prime subunit
IP	DNA-directed RNA polymerase, subunit beta-prime; DNA-directed RNA pol I, largest subunit
CL	2.2.2 Transcription related GO:0006350
EC
GO	InterPro Biological Process: transcription (GO:0006350) Molecular Function: DNA binding (GO:0003677) Molecular Function: DNA-directed RNA polymerase activity (GO:0003899) Curated
PM
AN
CC	COG: [KS] Transcription;Function unknown;
CC	MODEL: XFF4834R
CC	STATUS: curated by darrasse (20120316)
MW	155134.6 Da
SQ	1404 aa
	........10........20........30........40........50 \| \| \| \| \| MKDLLNLFNQQRQTLDFDAIKIALASPDLIRSWSYGEVKKPETINYRTFK PERDGLFCAAIFGPIKDYECLCGKYKRMKHRGVVCEKCGTEVTLAKVRRE RMGHIDLASPVAHIWFLKSLPSRIGLMLDMTLRDIERVLYFEAYVVTEPG LTPLERRQLLTEEQYLTARQEYNDDFDAAMGAEAVYELLRTIDLQSEMTR LREEIASTGSETKLKRLTKRIKLIEAFLESGNRPEWMVMTVLPVLPPDLR PLVPLDGGRFATSDLNDLYRRVINRNNRLRRLLELNAPDIIVRNEKRMLQ ESVDALLDNGRRGRAITGTNKRPLKSLADMIKGKQGRFRQNLLGKRVDYS GRSVITVGPYLKLHQCGLPKKMALELFKPFVFAKLQRRGLATTIKAAKKL VEREEAEVWDILEEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLH PLVCTAFNADFDGDQMAVHVPLSLEAQLEARALMMSTNNILSPANGEPII VPSQDVVLGLYYMSRALENKKGEGMVFANTSEVKRAYDNRVVELHAKVKV RITQVDVEAGGKRSSGTSIVDTTVGRALLSEILPEGLPFQLANTEMTKKN ISRLINSSYRLLGLKDTVVFADKLMYTGYAYATRAGVSIGIDDMLIPDEK KGILTEAEAEVLEIQEQYQSGLVTAGERYNKVVDIWSRTSERIAKAMMDT IGTEKVENAKGETIDQKSMNSLYIMADSGARGSQAQIRQLAGMRGLMARP DGSIIETPIKANFREGLNVQEYFNSTHGARKGLADTALKTANSGYLTRRL VDVAQDVVITEIDCGTTEGLIMTPIVEGGDVVEPLRERVLGRVVAEDVYL PGNDEEPIVTRNTLLDEAWVAKLEDASVQSVKVRSTISCESSFGVCARCY GRDLARGHQVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAVDN ITVKTTGSVKFNNLKSVAHASGSLVAVSRSGELSVLDGHGRERERYKLPY GATITAKDGDAVKAGQSVANWDPHNHPIVSEVAGFIRFIDFVDGVTVIEK TDELTGLASREITDPKRRGAQAKELRPIVRIVDAKGNDLTIPNTDLPAQY LLPPRSIVNLQDGAAVGVGDVVAKIPQEASKTRDITGGLPRVADLFEARK PKDPAILAERSGIISFGKDTKGKQRLIIKDTDGSEHEELIPKYRQIIVFE GEHVTKGETVVDGEPSPQDILRLLGVEPLAAYLVKEIQDVYRLQGVKIND KHIEVITRQMLRKVEIVDQGNSKFLNGEQVERQRVIEENARLVKRNELPA KYDPVLLGITKASLATESFISAASFQETTRVLTEAAVRGTRDNLRGLKEN VIVGRLIPAGTGLAYHAGRRKASGLTDSEMETLSGKPAVAEPVAAVADAG ADEE

Domain decomposition

YP_362723.1 lcl|rpoC-XCV0992

1386

S=6995 I=96 E=0

DNA-directed RNA polymerase subunit beta'

NP_641313.1 lcl|rpoC-XAC0966

1386

S=6995 I=96 E=0

DNA-directed RNA polymerase subunit beta'

NP_636275.1 lcl|rpoC-XCC0889

1386

S=6940 I=95 E=0

DNA-directed RNA polymerase subunit beta'

lcl|rpoC-XALc_0508

1385

S=6604 I=90 E=0

probable dna-directed rna polymerase, subunit beta-prime protein

IPR007080 [G3DSA:3.90.1120.10]

345

RNA polymerase Rpb1, domain 1

IPR000722 [G3DSA:2.40.40.30]

346

488

RNA polymerase, alpha subunit

[PTHR19376:SF4]

1363

[PTHR19376]

1363

IPR007081 [PF04998]

766

1321

RNA polymerase Rpb1, domain 5

IPR000722 [PF00623]

344

486

RNA polymerase, alpha subunit

IPR007080 [PF04997]

342

RNA polymerase Rpb1, domain 1

IPR007083 [PF05000]

674

763

RNA polymerase Rpb1, domain 4

IPR007066 [PF04983]

489

644

RNA polymerase Rpb1, domain 3

IPR006592 [SM00663]

235

514

RNA polymerase, N-terminal

IPR012754 [TIGR02386]

1368

DNA-directed RNA polymerase, subunit beta-prime

[SSF64484]

1363

Suggestions

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ID
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	Validation code (copy this one PmHek0ow)

Access unfiltered results

	Set of Uniprot with relevant PubMed cross-references ncbi-blastp	0 hits
	Swiss-Prot ncbi-blastp	0 hits
	Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp	0 hits
	HAMAP scan	0 hits
	IprScan	12 hits

Miscellaneous analyses

ERROR Tag PERLLIB Portal/Tools.pl GetLocalBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBnS5fOX/XFF4834R_chr09720.xml_fasta", "https://iant.toulouse.inra.fr/bacteria/annotation/web/img/XFF4834R.png"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

ERROR Tag PERLLIB Portal/Tools.pl GetNcbiBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBnS5fOX/XFF4834R_chr09720.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

ERROR Tag PERLLIB Portal/Tools.pl GetUniprotBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBnS5fOX/XFF4834R_chr09720.xml_fasta"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

ERROR Tag PERLLIB Portal/Tools.pl GetKeggBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBnS5fOX/XFF4834R_chr09720.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

rpoA XFF4834R_chr10020

ID	rpoA
AC	XFF4834R_chr10020
LT	XFF4834R_chr10020
OR	XFF4834R_chr from 1132809 to 1133807 on strand +
DE	DNA-directed RNA polymerase subunit alpha
IP	DNA-directed RNA polymerase, dimerisation; DNA-directed RNA polymerase, alpha subunit
CL	2.2.2 Transcription related GO:0006350
EC
GO	InterPro Biological Process: transcription (GO:0006350) DNA-dependent (GO:0006351) Molecular Function: DNA binding (GO:0003677) Molecular Function: DNA-directed RNA polymerase activity (GO:0003899) Molecular Function: protein dimerization activity (GO:0046983) Curated
PM
AN
CC	COG: [K] Transcription;
CC	MODEL: XFF4834R
CC	STATUS: curated by darrasse (20120316)
MW	36363.1 Da
SQ	332 aa
	........10........20........30........40........50 \| \| \| \| \| MTVTANQVLRPRGPQIERLTDNRAKVVIEPLERGYGHTLGNALRRVLLSS IPGFAITEVEIDGVLHEYTTVEGLQEDVLDVLLNLKDVAIRMHSGDSATL SLSKQGPGTVTAADIRTDHNVEIINGDHVICHLTKDTALNMRLKIERGFG YQPAAARRRPDEETRTIGRLMLDASFSPVRRVAYAVEAARVEQRTDLDKL VIDIETNGTIDAEEAVRTAADILSDQLSVFGDFTHRDRGAAKPAASGVDP VLLRPIDDLELTVRSANCLKAESIYYIGDLIQKTEVELLKTPNLGKKSLT EIKEVLAQRGLALGMKLENWPPAGVAQHGMLG

Domain decomposition

YP_362754.1 lcl|rpoA-XCV1023

332

S=1569 I=92 E=0

DNA-directed RNA polymerase subunit alpha

NP_636305.1 lcl|rpoA-XCC0919

332

S=1569 I=92 E=0

DNA-directed RNA polymerase subunit alpha

NP_641343.1 lcl|rpoA-XAC0996

332

S=1569 I=92 E=0

DNA-directed RNA polymerase subunit alpha

lcl|rpoA-XALc_0538

332

S=1526 I=88 E=9.27855e-178

probable dna-directed rna polymerase alpha chain (rna polymerase alpha subunit) protein

IPR011262 [G3DSA:2.170.120.12]

176

DNA-directed RNA polymerase, insert

[G3DSA:1.10.150.20]

245

328

IPR011773 [MF_00059]

316

DNA-directed RNA polymerase, alpha subunit

IPR011261 [PF01193]

230

DNA-directed RNA polymerase, dimerisation

IPR011260 [PF03118]

250

307

RNA polymerase, alpha subunit, C-terminal

IPR011262 [PF01000]

154

DNA-directed RNA polymerase, insert

IPR011263 [SM00662]

233

DNA-directed RNA polymerase, RpoA/D/Rpb3-type

IPR011773 [TIGR02027]

316

DNA-directed RNA polymerase, alpha subunit

[seg]

179

194

IPR011262 [SSF56553]

177

DNA-directed RNA polymerase, insert

IPR009025 [SSF55257]

230

DNA-directed RNA polymerase, RBP11-like

IPR011260 [SSF47789]

248

328

RNA polymerase, alpha subunit, C-terminal

Suggestions

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ID
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GO
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Access unfiltered results

	Set of Uniprot with relevant PubMed cross-references ncbi-blastp	426 hits
	Swiss-Prot ncbi-blastp	0 hits
	Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp	0 hits
	HAMAP scan	0 hits
	IprScan	13 hits

Miscellaneous analyses

ERROR Tag PERLLIB Portal/Tools.pl GetLocalBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBnS5fOX/XFF4834R_chr10020.xml_fasta", "https://iant.toulouse.inra.fr/bacteria/annotation/web/img/XFF4834R.png"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

ERROR Tag PERLLIB Portal/Tools.pl GetNcbiBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBnS5fOX/XFF4834R_chr10020.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

ERROR Tag PERLLIB Portal/Tools.pl GetUniprotBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBnS5fOX/XFF4834R_chr10020.xml_fasta"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

ERROR Tag PERLLIB Portal/Tools.pl GetKeggBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBnS5fOX/XFF4834R_chr10020.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

rpoZ XFF4834R_chr12500

ID	rpoZ
AC	XFF4834R_chr12500
LT	XFF4834R_chr12500
OR	XFF4834R_chr from 1414611 to 1414910 on strand +
DE	DNA-directed RNA polymerase subunit omega
IP	RNA polymerase Rpb6
CL	2.2.2 Transcription related GO:0006350
EC
GO	InterPro DNA-dependent (GO:0006351) Molecular Function: DNA binding (GO:0003677) Molecular Function: DNA-directed RNA polymerase activity (GO:0003899) Curated
PM
AN
CC	COG: [K] Transcription;
CC	MODEL: XFF4834R
CC	STATUS: curated by darrasse (20120316)
MW	11142.4 Da
SQ	99 aa
	........10........20........30........40........50 \| \| \| \| \| MARITVEDCLEVVNNRFELVMMASKRARQLANGVQPLIENADASDKPTVM ALREIAARRIDNALIDEVEKAERERAEREALEWAAAEVVADEDMSKNDD

Domain decomposition

YP_365242.1 lcl|rpoZ-XCV3511

S=328 I=72 E=1.684e-33

DNA-directed RNA polymerase subunit omega

NP_638594.1 lcl|rpoZ-XCC3248

S=328 I=72 E=1.684e-33

DNA-directed RNA polymerase subunit omega

NP_643701.1 lcl|rpoZ-XAC3394

S=328 I=72 E=1.684e-33

DNA-directed RNA polymerase subunit omega

lcl|rpoZ-XALc_0798

S=297 I=64 E=9.77524e-30

probable dna-directed rna polymerase omega subunit protein

IPR003716 [MF_00366]

DNA-directed RNA polymerase, omega subunit

IPR006110 [PF01192]

RNA polymerase Rpb6

IPR003716 [TIGR00690]

DNA-directed RNA polymerase, omega subunit

[seg]

IPR006110 [SSF63562]

RNA polymerase Rpb6

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Access unfiltered results

	Set of Uniprot with relevant PubMed cross-references ncbi-blastp	8 hits
	Swiss-Prot ncbi-blastp	350 hits
	Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp	1 hits
	HAMAP scan	0 hits
	IprScan	5 hits

Miscellaneous analyses

ERROR Tag PERLLIB Portal/Tools.pl GetLocalBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBnS5fOX/XFF4834R_chr12500.xml_fasta", "https://iant.toulouse.inra.fr/bacteria/annotation/web/img/XFF4834R.png"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

ERROR Tag PERLLIB Portal/Tools.pl GetNcbiBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBnS5fOX/XFF4834R_chr12500.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

ERROR Tag PERLLIB Portal/Tools.pl GetUniprotBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBnS5fOX/XFF4834R_chr12500.xml_fasta"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

ERROR Tag PERLLIB Portal/Tools.pl GetKeggBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBnS5fOX/XFF4834R_chr12500.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

hpf XFF4834R_chr16660

ID	hpf
AC	XFF4834R_chr16660
LT	XFF4834R_chr16660
OR	XFF4834R_chr from 1920154 to 1920471 on strand -
DE	probable sigma-54 modulation protein
IP	Ribosomal protein S30Ae/sigma 54 modulation protein
CL	2.2.2 Transcription related GO:0006350
EC
GO	InterPro Biological Process: primary metabolic process (GO:0044238) Molecular Function: binding (GO:0005488) Curated
PM
AN
CC	COG: [J] Translation, ribosomal structure and biogenesis;
CC	MODEL: XFF4834R
CC	STATUS: curated by cverniere (20100810)
MW	12107.8 Da
SQ	105 aa
	........10........20........30........40........50 \| \| \| \| \| MRIETYGHQLEVTPALREYVASKLQRLQRHFDQHCEVRTQLAVRKPDHHV VATVNLPGRTLHADASGSTMYAAIDLLVDKLDRLILKHKEKKCNHHAREV RDNPA

NP_643282.1 lcl|XAC2973-XAC2973

105

S=549 I=99 E=2.68132e-60

sigma-54 modulation protein

NP_638151.1 lcl|XCC2803

105

S=546 I=98 E=7.83591e-60

sigma-54 modulation protein

YP_364850.1 lcl|XCV3119

S=451 I=97 E=2.06153e-48

sigma-54 modulation protein

lcl|XALc_2141

105

S=442 I=79 E=2.51719e-47

putative sigma-54 modulation protein

Q51562 sp|Q51562|Q51562_PSEAE

S=228 I=50 E=7.01152e-20

(rpoN)

Pubmed 8113171

prodomImg

P17160 sp|P17160|RP5M_AZOVI

S=223 I=48 E=2.63852e-19

Probable sigma(54) modulation protein

Pubmed 2695747,3481423

prodomImg

Q9FDD7 sp|Q9FDD7|Q9FDD7_PSESG

S=219 I=50 E=8.86513e-19

Putative sigma-54 modulation protein

Pubmed 11697147

prodomImg

Q7WUF9 sp|Q7WUF9|Q7WUF9_PSEFL

S=218 I=50 E=1.23473e-18

Putative sigma-54 modulation protein

Pubmed 15782640

prodomImg

O86453 sp|O86453|O86453_PSEST

S=217 I=48 E=1.46995e-18

Putative uncharacterized protein

Pubmed 9687481

prodomImg

sp|P17160|RP5M_AZOVI

S=223 I=48 E=1.66185e-19

Probable sigma(54) modulation protein

sp|P0AFX3|RP5M_SHIFL

S=199 I=43 E=1.36836e-16

Probable sigma(54) modulation protein

sp|P0AFX0|RP5M_ECOLI

S=199 I=43 E=1.36836e-16

Probable sigma(54) modulation protein

sp|P0AFX1|RP5M_ECOL6

S=199 I=43 E=1.36836e-16

Probable sigma(54) modulation protein

sp|P0AFX2|RP5M_ECO57

S=199 I=43 E=1.36836e-16

Probable sigma(54) modulation protein

IPR003489 [G3DSA:3.30.160.100]

Ribosomal protein S30Ae/sigma 54 modulation protein

IPR003489 [PF02482]

Ribosomal protein S30Ae/sigma 54 modulation protein

IPR003489 [TIGR00741]

Ribosomal protein S30Ae/sigma 54 modulation protein

PD696818

102

S=234 I=57 E=7.60867e-21

PD003440

S=137 I=39 E=3.88313e-09

PD894917

S=111 I=30 E=4.69243e-06

PD734388

S=102 I=30 E=6.41725e-05

IPR003489 [SSF69754]

Ribosomal protein S30Ae/sigma 54 modulation protein

Suggestions

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Move your mouse over each field to get more informations
ID
DE
EC
GO
PM
CC
CL
	Your email
	Validation code (copy this one UjcTBKm0)

Access unfiltered results

	Set of Uniprot with relevant PubMed cross-references ncbi-blastp	28 hits
	Swiss-Prot ncbi-blastp	35 hits
	Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp	0 hits
	HAMAP scan	0 hits
	IprScan	4 hits

Miscellaneous analyses

ERROR Tag PERLLIB Portal/Tools.pl GetLocalBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBnS5fOX/XFF4834R_chr16660.xml_fasta", "https://iant.toulouse.inra.fr/bacteria/annotation/web/img/XFF4834R.png"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

ERROR Tag PERLLIB Portal/Tools.pl GetNcbiBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBnS5fOX/XFF4834R_chr16660.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

ERROR Tag PERLLIB Portal/Tools.pl GetUniprotBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBnS5fOX/XFF4834R_chr16660.xml_fasta"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

ERROR Tag PERLLIB Portal/Tools.pl GetKeggBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBnS5fOX/XFF4834R_chr16660.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

XFF4834R_chr23500246_2502606_f1_XFF4834R-XFF4834R_chr21580 XFF4834R_chr21580

ID	XFF4834R_chr23500246_2502606_f1_XFF4834R-XFF4834R_chr21580
AC	XFF4834R_chr21580
LT	XFF4834R_chr21580
OR	XFF4834R_chr from 2500246 to 2502606 on strand +
DE	putative Tex-like transcriptional accessory protein
IP	Transcription elongation factor Spt6; Tex-like protein, N-terminal
CL	2.2.2 Transcription related GO:0006350
EC
GO	InterPro Molecular Function: RNA binding (GO:0003723) acting on ester bonds (GO:0016788) nucleotide and nucleic acid metabolic process (GO:0006139) Curated
PM
AN
CC	COG: [K] Transcription;
CC	MODEL: XFF4834R
CC	STATUS: curated by darrasse (20120402)
MW	84983.7 Da
SQ	786 aa
	........10........20........30........40........50 \| \| \| \| \| MHDSQLAQQIARTIADEIGAQPAQAHAAIALLDEGASVPFIARYRKEVTG GLDDTQLRNLETRLTYLRELEERRAAILSSIGEQGKLSDELRNEIVAADT KSRLEDLYLPYKPKRRTRAQIAREAGLEPLADGLLADPTQSPDVAAAAFI DAEKGVADSKAALEGARAILMERWGEDAALVGELRSWLGDNGVIRARVAE GKEEAGAKYRDYFDHAETLAKIPSHRLLALFRARREEILYLDLDPGSDAE AGHQYAEGRVARNAGISNEGRPADRWLLDACRLTWRAKLHMHLLLDLFNQ AREKAEAEAIAVFGDNLKDLMLAAPAGPRVVLGLDPGIRTGCKIAVVDAT GKLVATETIYPHEPKRQWDQSLQTIKKLCMQHNVELIAIGNGTASRETDK LAGEAIALCGAAKLQKVVVSEAGASVYSASEFAAKEFPNLDVSLRGAVSI ARRLQDPLAELVKIEPKAIGVGQYQHDVDQYRLAKALEARVEDCVNAVGV YVNTASAALLSRVSGLSGTVAENIVRHRDDNGPFKRRKDLLKVPRLGDKT FEQCAGFLRIADGDEPLDVSAVHPEAYPVVERIVGSTGKPIKALLGDGSF LRGLKPEMFTDDQFGVPTVRDILKELEKPGRDPRPEFKAAQFAEGIEDIK HLKPGMVLEGVVSNVAAFGAFVDIGVHQDGLVHISALSETFVKDPRDVVK AGDIVKVKVLEVDVARKRIALTCRLSDTPPAADGSAQPRDARGSGPGQGR RDGGGRGQAQANSKPRITAPPADNALAAAFARAKRS

XFF4834R_chr26790 lcl|pnp-XFF4834R_chr26790

639

737

S=153 I=43 E=1.34007e-11

polynucleotide phosphorylase/polyadenylase

XFF4834R_chr23010 lcl|rpsA-XFF4834R_chr23010

652

729

S=150 I=42 E=3.34743e-11

30S ribosomal subunit protein S1

XFF4834R_chr23010 lcl|rpsA-XFF4834R_chr23010

660

724

S=129 I=47 E=9.85173e-09

30S ribosomal subunit protein S1

NP_642379.1 lcl|tex-XAC2053

768

S=3628 I=92 E=0

transcription-related protein

YP_363945.1 lcl|tex-XCV2214

768

S=3588 I=91 E=0

transcription-related protein

NP_637510.1 lcl|tex-XCC2154

740

S=3437 I=89 E=0

transcription-related protein

lcl|tex-XALc_1636

729

S=3126 I=82 E=0

putative transcription-related protein

lcl|pnp-XALc_1020

646

724

S=153 I=48 E=4.64661e-11

probable polynucleotide phosphorylase protein

YP_364564.1 lcl|pnp-XCV2833

639

737

S=153 I=43 E=5.06992e-11

polynucleotide phosphorylase/polyadenylase

NP_642994.1 lcl|pnp-XAC2683

639

737

S=153 I=43 E=5.20428e-11

polynucleotide phosphorylase/polyadenylase

NP_637857.1 lcl|pnp-XCC2507

639

724

S=153 I=47 E=5.38898e-11

polynucleotide phosphorylase/polyadenylase

YP_364227.1 lcl|rpsA-XCV2496

652

729

S=150 I=42 E=1.17086e-10

30S ribosomal protein S1

YP_364227.1 lcl|rpsA-XCV2496

660

724

S=129 I=47 E=3.56823e-08

30S ribosomal protein S1

Q19V19 sp|Q19V19|Q19V19_HAEIN

736

S=2159 I=59 E=0

HI0568-like protein

Pubmed 16714566

prodomImg

Q45388 sp|Q45388|TEX_BORPE

727

S=2124 I=60 E=0

Protein tex ; RNA-binding

Pubmed 8755871

prodomImg

Q51152 sp|Q51152|YHGF_NEIMB

732

S=2057 I=58 E=0

Uncharacterized protein NMB0075 ; RNA-binding

Pubmed 8655518

prodomImg

Q51062 sp|Q51062|YHGF_NEIGO

491

S=1200 I=53 E=2.71774e-136

Uncharacterized protein in region E ; RNA-binding

Pubmed 8655518

prodomImg

Q6UB12 sp|Q6UB12|Q6UB12_PSESY

436

729

S=1153 I=72 E=1.3462e-130

Putative uncharacterized protein

Pubmed 14660376

prodomImg

O30356 sp|O30356|O30356_NEIGO

509

732

S=780 I=67 E=2.00501e-85

Tex protein

Pubmed 9321671

prodomImg

Q9LC93 sp|Q9LC93|Q9LC93_BACHD

420

723

S=735 I=53 E=5.58612e-80

YdcI

Pubmed 10972189

prodomImg

P96626 sp|P96626|P96626_BACSU

359

588

S=613 I=56 E=3.44507e-65

YdcI protein

Pubmed 9341680

prodomImg

P96626 sp|P96626|P96626_BACSU

401

S=519 I=32 E=9.63393e-54

YdcI protein

Pubmed 9341680

prodomImg

Q93HY1 sp|Q93HY1|Q93HY1_ENTFC

296

500

S=574 I=57 E=1.70791e-60

Putative uncharacterized protein

Pubmed 11958930

prodomImg

IPR012340 [G3DSA:2.40.50.140]

655

750

Nucleic acid-binding, OB-fold

IPR018974 [PF09371]

206

Tex-like protein, N-terminal

IPR003029 [PF00575]

651

724

Ribosomal protein S1, RNA binding domain

IPR006641 [SM00732]

329

428

Resolvase, RNase H-like fold

[SM00316]

653

724

IPR003029 [PS50126]

655

724

Ribosomal protein S1, RNA binding domain

[seg]

226

239

[seg]

742

757

[seg]

769

783

PD361497

372

499

S=463 I=72 E=2.02537e-48

PD491134

201

S=399 I=69 E=1.39498e-40

PD584958

297

371

S=266 I=65 E=1.46309e-24

PDA9Q2O1

298

583

S=220 I=24 E=6.19467e-19

PD610291

607

655

S=184 I=71 E=1.2842e-14

PD731224

417

577

S=174 I=33 E=2.30127e-13

PD011817

500

553

S=174 I=59 E=2.38294e-13

PD301170

566

721

S=172 I=36 E=3.74983e-13

PDA1U7Z9

584

614

S=154 I=94 E=6.20731e-11

PD594032

656

731

S=149 I=48 E=2.19759e-10

Suggestions

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ID
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Access unfiltered results

	Set of Uniprot with relevant PubMed cross-references ncbi-blastp	99 hits
	Swiss-Prot ncbi-blastp	537 hits
	Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp	4 hits
	HAMAP scan	0 hits
	IprScan	13 hits

Miscellaneous analyses

ERROR Tag PERLLIB Portal/Tools.pl GetLocalBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBnS5fOX/XFF4834R_chr21580.xml_fasta", "https://iant.toulouse.inra.fr/bacteria/annotation/web/img/XFF4834R.png"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

ERROR Tag PERLLIB Portal/Tools.pl GetNcbiBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBnS5fOX/XFF4834R_chr21580.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

ERROR Tag PERLLIB Portal/Tools.pl GetUniprotBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBnS5fOX/XFF4834R_chr21580.xml_fasta"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

ERROR Tag PERLLIB Portal/Tools.pl GetKeggBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBnS5fOX/XFF4834R_chr21580.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

greB XFF4834R_chr27310

ID	greB
AC	XFF4834R_chr27310
LT	XFF4834R_chr27310
OR	XFF4834R_chr from 3148594 to 3149100 on strand +
DE	transcription elongation factor
IP	Transcription elongation factor GreB, prokaryotic
CL	2.2.2 Transcription related GO:0006350
EC
GO	InterPro DNA-dependent (GO:0006355) Molecular Function: transcription elongation regulator activity (GO:0003711) Molecular Function: DNA binding (GO:0003677) Curated
PM
AN
CC	COG: [K] Transcription;
CC	MODEL: XFF4834R
CC	STATUS: curated by darrasse (20120315)
MW	18829 Da
SQ	168 aa
	........10........20........30........40........50 \| \| \| \| \| MSRWRPPAEKSTALITPEGHARLKAELDDLWRVRRPEVVRALAAAAAEGD RSENAEYTYRKKQLGEIDRRVRYLSKRLEALRVVDTAPTDANAVFFGAQV ELEDADSGELLRYRIVGPDETDAGRGWISIDSPLARALLKKRVDDEFDAH LPAGKHTFVVVSVDYASL

GREA_MF_00105

raw_score=3168 norm_score=24.332

Transcription elongation factor greA [greA].

XFF4834R_chr20090 lcl|greA-XFF4834R_chr20090

165

S=181 I=33 E=8.94073e-16

transcription elongation factor

NP_643043.1 lcl|greB-XAC2734

168

S=712 I=85 E=1.41889e-79

transcription elongation factor GreB

YP_364617.1 lcl|greB-XCV2886

168

S=703 I=84 E=1.50692e-78

transcription elongation factor GreB

NP_637911.1 lcl|greB-XCC2563

167

S=674 I=80 E=5.70608e-75

transcription elongation factor GreB

lcl|greB-XALc_0974

167

S=613 I=72 E=1.16971e-67

probable transcription elongation factor greb (transcript cleavage factor greb) protein

lcl|greA-XALc_1340

165

S=188 I=34 E=4.64283e-16

probable transcription elongation factor grea (transcript cleavage factor grea) protein

NP_637209.1 lcl|greA-XCC1844

165

S=181 I=34 E=3.13348e-15

transcription elongation factor GreA

YP_363641.1 lcl|greA-XCV1910

165

S=181 I=33 E=3.21652e-15

transcription elongation factor GreA

NP_642189.1 lcl|greA-XAC1863

165

S=181 I=33 E=3.21652e-15

transcription elongation factor GreA

P30128 sp|P30128|GREB_ECOLI

166

S=306 I=45 E=6.2424e-29

Transcription elongation factor greB ; DNA-binding regulation

Pubmed 8431948

prodomImg

A4ZPX6 sp|A4ZPX6|A4ZPX6_CHRVO

168

S=215 I=40 E=6.40484e-18

Transcription elongation factor GreB

Pubmed 17400765

prodomImg

Q9L4D3 sp|Q9L4D3|GREA_XANCP

165

S=181 I=34 E=1.04016e-13

Transcription elongation factor greA ; Coiled DNA-binding regulation

Pubmed 10784047

prodomImg

P0A6W5 sp|P0A6W5|GREA_ECOLI

165

S=177 I=32 E=3.12033e-13

Transcription elongation factor greA ; DNA-binding regulation

Pubmed 2243801

prodomImg

Q69AA3 sp|Q69AA3|Q69AA3_RHIME

166

S=167 I=33 E=5.44722e-12

Transcription elongation factor ; DNA-binding regulation

Pubmed 15287875

prodomImg

P56894 sp|P56894|GREA_RHIME

166

S=167 I=33 E=5.49492e-12

Transcription elongation factor greA ; DNA-binding regulation

Pubmed 11157937

prodomImg

B4RH54 sp|B4RH54|GREA_PHEZH

165

S=164 I=28 E=9.85501e-12

Transcription elongation factor greA ; DNA-binding regulation

Pubmed 18700039

prodomImg

A0M5U7 sp|A0M5U7|GREA_GRAFK

163

S=161 I=26 E=2.85503e-11

Transcription elongation factor greA ; Coiled DNA-binding regulation

Pubmed 17107561

prodomImg

O68546 sp|O68546|GREA_RHILV

166

S=158 I=33 E=5.2105e-11

Transcription elongation factor greA ; DNA-binding regulation

Pubmed 9756877

prodomImg

A6BLS9 sp|A6BLS9|A6BLS9_9GAMM

165

S=156 I=32 E=1.13208e-10

Transcription elongation factor ; DNA-binding regulation

Pubmed 17618403

prodomImg

sp|Q8PJ11|GREB_XANAC

168

S=712 I=85 E=3.28092e-78

Transcription elongation factor greB ; DNA-binding regulation

sp|Q8P7P8|GREB_XANCP

167

S=674 I=80 E=1.31943e-73

Transcription elongation factor greB ; DNA-binding regulation

IPR001437 [G3DSA:1.10.287.180]

Transcription elongation factor, GreA/GreB region, prokaryotic

IPR001437 [G3DSA:3.10.50.30]

166

Transcription elongation factor, GreA/GreB region, prokaryotic

[MF_00105]

165

IPR001437 [PF03449]

Transcription elongation factor, GreA/GreB region, prokaryotic

IPR001437 [PF01272]

165

Transcription elongation factor, GreA/GreB region, prokaryotic

IPR006358 [TIGR01461]

167

Transcription elongation factor GreB, prokaryotic

IPR018151 [PS00829]

Transcription elongation factor, GreA/GreB, conserved site

IPR018151 [PS00830]

129

145

Transcription elongation factor, GreA/GreB, conserved site

[seg]

PD004918

154

S=161 I=54 E=4.36198e-12

PD882860

S=122 I=65 E=2.61971e-07

Suggestions

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Move your mouse over each field to get more informations
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Access unfiltered results

	Set of Uniprot with relevant PubMed cross-references ncbi-blastp	25 hits
	Swiss-Prot ncbi-blastp	270 hits
	Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp	1 hits
	HAMAP scan	0 hits
	IprScan	11 hits

Miscellaneous analyses

ERROR Tag PERLLIB Portal/Tools.pl GetLocalBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBnS5fOX/XFF4834R_chr27310.xml_fasta", "https://iant.toulouse.inra.fr/bacteria/annotation/web/img/XFF4834R.png"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

ERROR Tag PERLLIB Portal/Tools.pl GetNcbiBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBnS5fOX/XFF4834R_chr27310.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

ERROR Tag PERLLIB Portal/Tools.pl GetUniprotBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBnS5fOX/XFF4834R_chr27310.xml_fasta"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

ERROR Tag PERLLIB Portal/Tools.pl GetKeggBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBnS5fOX/XFF4834R_chr27310.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

XFF4834R_chr31340

ID
AC	XFF4834R_chr31340
LT	XFF4834R_chr31340
OR	XFF4834R_chr from 3604325 to 3604927 on strand -
DE	putative 2'-5' RNA ligase
IP	2',5' RNA ligase; Phosphoesterase, HXTX
CL	2.2.2 Transcription related GO:0006350
EC
GO	InterPro Biological Process: RNA metabolic process (GO:0016070) Molecular Function: 2'-5'-RNA ligase activity (GO:0008664) Curated
PM
AN	Gene ID suppressed
CC	COG: [J] Translation, ribosomal structure and biogenesis;
CC	MODEL: XFF4834R
CC	STATUS: curated by fguerin (20100421)
MW	22107 Da
SQ	200 aa
	........10........20........30........40........50 \| \| \| \| \| MKQQFLYLSSAEAQLSLGLGEEKTTERLFFAVMADAPTAEHAARIADSLL RGGHAEGKPLARERLHVTLHHLGDYAGGLPPSLVSRASQAATRVQMDAFA VEFDRVGTFGGRRSQLPCVLRGEEQVRGLYELQGALGRQLAHVGIAGDAQ YTPHMTLLYCNQAVPQRRCDALAWTVRDFALVRSFLGQSRYQIEGRWSLR

NP_641700.1 lcl|XAC1365-XAC1365

200

S=1037 I=100 E=6.7273e-119

hypothetical protein

YP_363152.1 lcl|XCV1421

200

S=1007 I=97 E=3.61034e-115

hypothetical protein

NP_636693.1 lcl|XCC1319

200

S=856 I=87 E=6.60483e-97

hypothetical protein

Q6WLC8 sp|Q6WLC8|Q6WLC8_9BACT

200

S=337 I=43 E=1.46736e-32

Csw019

Pubmed 14660379

prodomImg

PD602737

S=298 I=97 E=1.11473e-28

PD007497

157

S=105 I=32 E=3.14047e-05

Suggestions

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ID
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Access unfiltered results

	Set of Uniprot with relevant PubMed cross-references ncbi-blastp	1 hits
	Swiss-Prot ncbi-blastp	0 hits
	Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp	1 hits
	HAMAP scan	0 hits
	IprScan	0 hits

Miscellaneous analyses

ERROR Tag PERLLIB Portal/Tools.pl GetLocalBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBnS5fOX/XFF4834R_chr31340.xml_fasta", "https://iant.toulouse.inra.fr/bacteria/annotation/web/img/XFF4834R.png"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

ERROR Tag PERLLIB Portal/Tools.pl GetNcbiBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBnS5fOX/XFF4834R_chr31340.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

ERROR Tag PERLLIB Portal/Tools.pl GetUniprotBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBnS5fOX/XFF4834R_chr31340.xml_fasta"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

ERROR Tag PERLLIB Portal/Tools.pl GetKeggBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBnS5fOX/XFF4834R_chr31340.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

XFF4834R_chr34150806_3627828_f1_XFF4834R-XFF4834R_chr31580 XFF4834R_chr31580

ID	XFF4834R_chr34150806_3627828_f1_XFF4834R-XFF4834R_chr31580
AC	XFF4834R_chr31580
LT	XFF4834R_chr31580
OR	XFF4834R_chr from 3626806 to 3627828 on strand +
DE	putative mRNA 3'-end processing factor
IP
CL	2.2.2 Transcription related GO:0006350
EC
GO	InterPro Curated
PM
AN
CC	COG: [J] Translation, ribosomal structure and biogenesis;
CC	MODEL: XFF4834R
CC	STATUS: curated by fguerin (20100421)
MW	37707.9 Da
SQ	340 aa
	........10........20........30........40........50 \| \| \| \| \| MRNGNDETSHTRGDLVVLGPEGLYCPQGDFHIDPWRPVPRAVITHGHGDH ARSGMGEYHCTRESLSILQWRLGDQVYHTHADGEAFQLGRARVSLHPAGH VLGSAQVRIEVDGEVWVASGDYKRQPDPTCKPFEVVPCDTFITEATFGLP VYRWPDTSEVAADISAWRRECAERGEAAILYCYALGKAQRVLAELRAWET QPALLHGAVAVGVEVYRQAGIPMLDTQPVSEHARGADYAGQLVIAPPSAA GSAWIRRFRSAQQGFASGWMRIRGNRRRRNYDRGFVVSDHADWPDLLRTI EDTGAQRVIATHGNTDALIQHLRERGVAAEAFRTDFGAEE