10 hits
XFF4834R_chr09710 | rpoB | XFF4834R_chr09710 | DNA-directed RNA polymerase subunit beta |
XFF4834R_chr09720 | rpoC | XFF4834R_chr09720 | RNA polymerase, beta prime subunit |
XFF4834R_chr10020 | rpoA | XFF4834R_chr10020 | DNA-directed RNA polymerase subunit alpha |
XFF4834R_chr12500 | rpoZ | XFF4834R_chr12500 | DNA-directed RNA polymerase subunit omega |
XFF4834R_chr16660 | hpf | XFF4834R_chr16660 | probable sigma-54 modulation protein |
XFF4834R_chr21580 | XFF4834R_chr23500246_2502606_f1_XFF4834R-XFF4834R_chr21580 | XFF4834R_chr21580 | putative Tex-like transcriptional accessory protein |
XFF4834R_chr27310 | greB | XFF4834R_chr27310 | transcription elongation factor |
XFF4834R_chr31340 | XFF4834R_chr31340 | putative 2'-5' RNA ligase |
XFF4834R_chr31580 | XFF4834R_chr34150806_3627828_f1_XFF4834R-XFF4834R_chr31580 | XFF4834R_chr31580 | putative mRNA 3'-end processing factor |
XFF4834R_chr37230 | rho | XFF4834R_chr37230 | transcription termination factor |
![]() XFF4834R_chr09700 |
![]() DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
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![]() |
![]() XFF4834R_chr09720 |
ID | rpoB |
AC | XFF4834R_chr09710 |
LT | XFF4834R_chr09710 |
OR | XFF4834R_chr from 1106593 to 1110744 on strand + |
DE | DNA-directed RNA polymerase subunit beta |
IP | DNA-directed RNA polymerase, beta subunit, bacterial-type |
CL | 2.2.2 Transcription related GO:0006350 |
EC | |
GO |
InterPro Biological Process: transcription (GO:0006350) DNA-dependent (GO:0006351) Molecular Function: DNA binding (GO:0003677) Molecular Function: DNA-directed RNA polymerase activity (GO:0003899) Molecular Function: ribonucleoside binding (GO:0032549) Curated |
PM | |
AN | |
CC | COG: [K] Transcription; |
CC | MODEL: XFF4834R |
CC | STATUS: curated by darrasse (20120316) |
MW | 154225 Da |
SQ | 1383 aa |
........10........20........30........40........50 |
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NP_641312.1 lcl|rpoB-XAC0965 |
1 |
1383 |
S=7345 I=100 E=0 |
DNA-directed RNA polymerase subunit beta |
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YP_362722.1 lcl|rpoB-XCV0991 |
1 |
1383 |
S=7332 I=100 E=0 |
DNA-directed RNA polymerase subunit beta |
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NP_636274.1 lcl|rpoB-XCC0888 |
1 |
1383 |
S=7253 I=99 E=0 |
DNA-directed RNA polymerase subunit beta |
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1 |
1383 |
S=6943 I=94 E=0 |
probable dna-directed rna polymerase, beta subunit protein |
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[coil] | 968 |
989 |
- |
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[coil] | 1045 |
1066 |
- |
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[G3DSA:3.90.1100.10] | 11 |
742 |
- |
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[G3DSA:2.40.50.100] | 743 |
815 |
- |
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[G3DSA:2.40.270.10] | 818 |
1292 |
- |
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IPR010243 [MF_01321] | 14 |
1383 |
DNA-directed RNA polymerase, beta subunit, bacterial-type |
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[PTHR20856:SF3] | 517 |
1381 |
- |
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IPR015712 [PTHR20856] | 517 |
1381 |
DNA-directed RNA polymerase, subunit 2 |
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IPR007120 [PF00562] | 691 |
1306 |
DNA-directed RNA polymerase, subunit 2, domain 6 |
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IPR007641 [PF04560] | 1308 |
1382 |
RNA polymerase Rpb2, domain 7 |
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IPR007645 [PF04565] | 541 |
610 |
RNA polymerase Rpb2, domain 3 |
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IPR007644 [PF04563] | 28 |
537 |
RNA polymerase, beta subunit, protrusion |
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IPR007642 [PF04561] | 157 |
227 |
RNA polymerase Rpb2, domain 2 |
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IPR007642 [PF04561] | 362 |
418 |
RNA polymerase Rpb2, domain 2 |
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IPR007642 [PF04561] | 449 |
482 |
RNA polymerase Rpb2, domain 2 |
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IPR019462 [PF10385] | 619 |
684 |
DNA-directed RNA polymerase, beta subunit, external 1 domain |
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IPR010243 [TIGR02013] | 9 |
1381 |
DNA-directed RNA polymerase, beta subunit, bacterial-type |
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IPR007121 [PS01166] | 1104 |
1116 |
RNA polymerase, beta subunit, conserved site |
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[SSF64484] | 3 |
1382 |
- |
Access unfiltered results
![]() |
Set of Uniprot with relevant PubMed cross-references ncbi-blastp |
0 hits |
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Swiss-Prot ncbi-blastp |
0 hits |
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Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp |
0 hits |
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HAMAP scan |
0 hits |
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IprScan |
19 hits |
Miscellaneous analyses
![]() XFF4834R_chr09710 |
![]() DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
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![]() XFF4834R_chr09730 |
ID | rpoC |
AC | XFF4834R_chr09720 |
LT | XFF4834R_chr09720 |
OR | XFF4834R_chr from 1110895 to 1115109 on strand + |
DE | RNA polymerase, beta prime subunit |
IP | DNA-directed RNA polymerase, subunit beta-prime; DNA-directed RNA pol I, largest subunit |
CL | 2.2.2 Transcription related GO:0006350 |
EC | |
GO |
InterPro Biological Process: transcription (GO:0006350) Molecular Function: DNA-directed RNA polymerase activity (GO:0003899) Molecular Function: DNA binding (GO:0003677) Curated |
PM | |
AN | |
CC | COG: [KS] Transcription;Function unknown; |
CC | MODEL: XFF4834R |
CC | STATUS: curated by darrasse (20120316) |
MW | 155134.6 Da |
SQ | 1404 aa |
........10........20........30........40........50 |
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YP_362723.1 lcl|rpoC-XCV0992 |
1 |
1386 |
S=6995 I=96 E=0 |
DNA-directed RNA polymerase subunit beta' |
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NP_641313.1 lcl|rpoC-XAC0966 |
1 |
1386 |
S=6995 I=96 E=0 |
DNA-directed RNA polymerase subunit beta' |
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NP_636275.1 lcl|rpoC-XCC0889 |
1 |
1386 |
S=6940 I=95 E=0 |
DNA-directed RNA polymerase subunit beta' |
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1 |
1385 |
S=6604 I=90 E=0 |
probable dna-directed rna polymerase, subunit beta-prime protein |
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IPR007080 [G3DSA:3.90.1120.10] | 16 |
345 |
RNA polymerase Rpb1, domain 1 |
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IPR000722 [G3DSA:2.40.40.30] | 346 |
488 |
RNA polymerase, alpha subunit |
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[PTHR19376:SF4] | 14 |
1363 |
- |
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[PTHR19376] | 14 |
1363 |
- |
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IPR007081 [PF04998] | 766 |
1321 |
RNA polymerase Rpb1, domain 5 |
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IPR000722 [PF00623] | 344 |
486 |
RNA polymerase, alpha subunit |
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IPR007080 [PF04997] | 16 |
342 |
RNA polymerase Rpb1, domain 1 |
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IPR007083 [PF05000] | 674 |
763 |
RNA polymerase Rpb1, domain 4 |
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IPR007066 [PF04983] | 489 |
644 |
RNA polymerase Rpb1, domain 3 |
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IPR006592 [SM00663] | 235 |
514 |
RNA polymerase, N-terminal |
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IPR012754 [TIGR02386] | 19 |
1368 |
DNA-directed RNA polymerase, subunit beta-prime |
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[SSF64484] | 5 |
1363 |
- |
Access unfiltered results
![]() |
Set of Uniprot with relevant PubMed cross-references ncbi-blastp |
0 hits |
![]() |
Swiss-Prot ncbi-blastp |
0 hits |
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Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp |
0 hits |
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HAMAP scan |
0 hits |
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IprScan |
12 hits |
Miscellaneous analyses
![]() XFF4834R_chr10010 |
![]() DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
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![]() XFF4834R_chr10030 |
ID | rpoA |
AC | XFF4834R_chr10020 |
LT | XFF4834R_chr10020 |
OR | XFF4834R_chr from 1132809 to 1133807 on strand + |
DE | DNA-directed RNA polymerase subunit alpha |
IP | DNA-directed RNA polymerase, dimerisation; DNA-directed RNA polymerase, alpha subunit |
CL | 2.2.2 Transcription related GO:0006350 |
EC | |
GO |
InterPro Biological Process: transcription (GO:0006350) DNA-dependent (GO:0006351) Molecular Function: protein dimerization activity (GO:0046983) Molecular Function: DNA-directed RNA polymerase activity (GO:0003899) Molecular Function: DNA binding (GO:0003677) Curated |
PM | |
AN | |
CC | COG: [K] Transcription; |
CC | MODEL: XFF4834R |
CC | STATUS: curated by darrasse (20120316) |
MW | 36363.1 Da |
SQ | 332 aa |
........10........20........30........40........50 |
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YP_362754.1 lcl|rpoA-XCV1023 |
1 |
332 |
S=1569 I=92 E=0 |
DNA-directed RNA polymerase subunit alpha |
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NP_636305.1 lcl|rpoA-XCC0919 |
1 |
332 |
S=1569 I=92 E=0 |
DNA-directed RNA polymerase subunit alpha |
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NP_641343.1 lcl|rpoA-XAC0996 |
1 |
332 |
S=1569 I=92 E=0 |
DNA-directed RNA polymerase subunit alpha |
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1 |
332 |
S=1526 I=88 E=9.27855e-178 |
probable dna-directed rna polymerase alpha chain (rna polymerase alpha subunit) protein |
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IPR011262 [G3DSA:2.170.120.12] | 53 |
176 |
DNA-directed RNA polymerase, insert |
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[G3DSA:1.10.150.20] | 245 |
328 |
- |
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IPR011773 [MF_00059] | 5 |
316 |
DNA-directed RNA polymerase, alpha subunit |
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IPR011261 [PF01193] | 28 |
230 |
DNA-directed RNA polymerase, dimerisation |
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IPR011260 [PF03118] | 250 |
307 |
RNA polymerase, alpha subunit, C-terminal |
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IPR011262 [PF01000] | 60 |
154 |
DNA-directed RNA polymerase, insert |
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IPR011263 [SM00662] | 23 |
233 |
DNA-directed RNA polymerase, RpoA/D/Rpb3-type |
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IPR011773 [TIGR02027] | 23 |
316 |
DNA-directed RNA polymerase, alpha subunit |
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[seg] | 77 |
88 |
- |
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[seg] | 179 |
194 |
- |
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IPR011262 [SSF56553] | 53 |
177 |
DNA-directed RNA polymerase, insert |
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IPR009025 [SSF55257] | 2 |
230 |
DNA-directed RNA polymerase, RBP11-like |
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IPR011260 [SSF47789] | 248 |
328 |
RNA polymerase, alpha subunit, C-terminal |
Access unfiltered results
Miscellaneous analyses
![]() XFF4834R_chr12490 |
![]() DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
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![]() XFF4834R_chr_1339 |
ID | rpoZ |
AC | XFF4834R_chr12500 |
LT | XFF4834R_chr12500 |
OR | XFF4834R_chr from 1414611 to 1414910 on strand + |
DE | DNA-directed RNA polymerase subunit omega |
IP | RNA polymerase Rpb6 |
CL | 2.2.2 Transcription related GO:0006350 |
EC | |
GO |
InterPro DNA-dependent (GO:0006351) Molecular Function: DNA-directed RNA polymerase activity (GO:0003899) Molecular Function: DNA binding (GO:0003677) Curated |
PM | |
AN | |
CC | COG: [K] Transcription; |
CC | MODEL: XFF4834R |
CC | STATUS: curated by darrasse (20120316) |
MW | 11142.4 Da |
SQ | 99 aa |
........10........20........30........40........50 |
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YP_365242.1 lcl|rpoZ-XCV3511 |
1 |
99 |
S=328 I=72 E=1.684e-33 |
DNA-directed RNA polymerase subunit omega |
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NP_638594.1 lcl|rpoZ-XCC3248 |
1 |
99 |
S=328 I=72 E=1.684e-33 |
DNA-directed RNA polymerase subunit omega |
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NP_643701.1 lcl|rpoZ-XAC3394 |
1 |
99 |
S=328 I=72 E=1.684e-33 |
DNA-directed RNA polymerase subunit omega |
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1 |
99 |
S=297 I=64 E=9.77524e-30 |
probable dna-directed rna polymerase omega subunit protein |
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IPR003716 [MF_00366] | 1 |
63 |
DNA-directed RNA polymerase, omega subunit |
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IPR006110 [PF01192] | 7 |
61 |
RNA polymerase Rpb6 |
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IPR003716 [TIGR00690] | 1 |
67 |
DNA-directed RNA polymerase, omega subunit |
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[seg] | 66 |
93 |
- |
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IPR006110 [SSF63562] | 1 |
85 |
RNA polymerase Rpb6 |
Access unfiltered results
![]() |
Set of Uniprot with relevant PubMed cross-references ncbi-blastp |
8 hits |
![]() |
Swiss-Prot ncbi-blastp |
350 hits |
![]() |
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp |
1 hits |
![]() |
HAMAP scan |
0 hits |
![]() |
IprScan |
5 hits |
Miscellaneous analyses
![]() XFF4834R_chr16650 |
![]() DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
![]() |
![]() |
![]() XFF4834R_chr16670 |
ID | hpf |
AC | XFF4834R_chr16660 |
LT | XFF4834R_chr16660 |
OR | XFF4834R_chr from 1920154 to 1920471 on strand - |
DE | probable sigma-54 modulation protein |
IP | Ribosomal protein S30Ae/sigma 54 modulation protein |
CL | 2.2.2 Transcription related GO:0006350 |
EC | |
GO |
InterPro Biological Process: primary metabolic process (GO:0044238) Molecular Function: binding (GO:0005488) Curated |
PM | |
AN | |
CC | COG: [J] Translation, ribosomal structure and biogenesis; |
CC | MODEL: XFF4834R |
CC | STATUS: curated by cverniere (20100810) |
MW | 12107.8 Da |
SQ | 105 aa |
........10........20........30........40........50 |
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NP_643282.1 lcl|XAC2973-XAC2973 |
1 |
105 |
S=549 I=99 E=2.68132e-60 |
sigma-54 modulation protein |
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NP_638151.1 lcl|XCC2803 |
1 |
105 |
S=546 I=98 E=7.83591e-60 |
sigma-54 modulation protein |
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YP_364850.1 lcl|XCV3119 |
1 |
89 |
S=451 I=97 E=2.06153e-48 |
sigma-54 modulation protein |
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1 |
105 |
S=442 I=79 E=2.51719e-47 |
putative sigma-54 modulation protein |
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1 |
91 |
S=228 I=50 E=7.01152e-20 |
(rpoN) |
Pubmed 8113171 |
|
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1 |
94 |
S=223 I=48 E=2.63852e-19 |
Probable sigma(54) modulation protein |
||
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1 |
92 |
S=219 I=50 E=8.86513e-19 |
Putative sigma-54 modulation protein |
Pubmed 11697147 |
|
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1 |
92 |
S=218 I=50 E=1.23473e-18 |
Putative sigma-54 modulation protein |
Pubmed 15782640 |
|
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1 |
95 |
S=217 I=48 E=1.46995e-18 |
Putative uncharacterized protein |
Pubmed 9687481 |
|
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1 |
94 |
S=223 I=48 E=1.66185e-19 |
Probable sigma(54) modulation protein |
||
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1 |
95 |
S=199 I=43 E=1.36836e-16 |
Probable sigma(54) modulation protein |
||
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1 |
95 |
S=199 I=43 E=1.36836e-16 |
Probable sigma(54) modulation protein |
||
![]() |
1 |
95 |
S=199 I=43 E=1.36836e-16 |
Probable sigma(54) modulation protein |
||
![]() |
1 |
95 |
S=199 I=43 E=1.36836e-16 |
Probable sigma(54) modulation protein |
||
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IPR003489 [G3DSA:3.30.160.100] | 1 |
98 |
Ribosomal protein S30Ae/sigma 54 modulation protein |
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IPR003489 [PF02482] | 3 |
95 |
Ribosomal protein S30Ae/sigma 54 modulation protein |
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IPR003489 [TIGR00741] | 1 |
99 |
Ribosomal protein S30Ae/sigma 54 modulation protein |
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9 |
102 |
S=234 I=57 E=7.60867e-21 |
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1 |
80 |
S=137 I=39 E=3.88313e-09 |
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1 |
90 |
S=111 I=30 E=4.69243e-06 |
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1 |
95 |
S=102 I=30 E=6.41725e-05 |
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IPR003489 [SSF69754] | 1 |
99 |
Ribosomal protein S30Ae/sigma 54 modulation protein |
Access unfiltered results
![]() |
Set of Uniprot with relevant PubMed cross-references ncbi-blastp |
28 hits |
![]() |
Swiss-Prot ncbi-blastp |
35 hits |
![]() |
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp |
0 hits |
![]() |
HAMAP scan |
0 hits |
![]() |
IprScan |
4 hits |
Miscellaneous analyses
![]() XFF4834R_chr21570 |
![]() DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
![]() |
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![]() XFF4834R_chr_2306 |
ID | XFF4834R_chr23500246_2502606_f1_XFF4834R-XFF4834R_chr21580 |
AC | XFF4834R_chr21580 |
LT | XFF4834R_chr21580 |
OR | XFF4834R_chr from 2500246 to 2502606 on strand + |
DE | putative Tex-like transcriptional accessory protein |
IP | Transcription elongation factor Spt6; Tex-like protein, N-terminal |
CL | 2.2.2 Transcription related GO:0006350 |
EC | |
GO |
InterPro Molecular Function: RNA binding (GO:0003723) acting on ester bonds (GO:0016788) nucleotide and nucleic acid metabolic process (GO:0006139) Curated |
PM | |
AN | |
CC | COG: [K] Transcription; |
CC | MODEL: XFF4834R |
CC | STATUS: curated by darrasse (20120402) |
MW | 84983.7 Da |
SQ | 786 aa |
........10........20........30........40........50 |
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XFF4834R_chr26790 lcl|pnp-XFF4834R_chr26790 |
639 |
737 |
S=153 I=43 E=1.34007e-11 |
polynucleotide phosphorylase/polyadenylase |
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XFF4834R_chr23010 lcl|rpsA-XFF4834R_chr23010 |
652 |
729 |
S=150 I=42 E=3.34743e-11 |
30S ribosomal subunit protein S1 |
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XFF4834R_chr23010 lcl|rpsA-XFF4834R_chr23010 |
660 |
724 |
S=129 I=47 E=9.85173e-09 |
30S ribosomal subunit protein S1 |
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NP_642379.1 lcl|tex-XAC2053 |
1 |
768 |
S=3628 I=92 E=0 |
transcription-related protein |
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YP_363945.1 lcl|tex-XCV2214 |
1 |
768 |
S=3588 I=91 E=0 |
transcription-related protein |
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NP_637510.1 lcl|tex-XCC2154 |
1 |
740 |
S=3437 I=89 E=0 |
transcription-related protein |
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1 |
729 |
S=3126 I=82 E=0 |
putative transcription-related protein |
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646 |
724 |
S=153 I=48 E=4.64661e-11 |
probable polynucleotide phosphorylase protein |
![]() |
YP_364564.1 lcl|pnp-XCV2833 |
639 |
737 |
S=153 I=43 E=5.06992e-11 |
polynucleotide phosphorylase/polyadenylase |
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NP_642994.1 lcl|pnp-XAC2683 |
639 |
737 |
S=153 I=43 E=5.20428e-11 |
polynucleotide phosphorylase/polyadenylase |
![]() |
NP_637857.1 lcl|pnp-XCC2507 |
639 |
724 |
S=153 I=47 E=5.38898e-11 |
polynucleotide phosphorylase/polyadenylase |
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YP_364227.1 lcl|rpsA-XCV2496 |
652 |
729 |
S=150 I=42 E=1.17086e-10 |
30S ribosomal protein S1 |
![]() |
YP_364227.1 lcl|rpsA-XCV2496 |
660 |
724 |
S=129 I=47 E=3.56823e-08 |
30S ribosomal protein S1 |
![]() |
6 |
736 |
S=2159 I=59 E=0 |
HI0568-like protein |
Pubmed 16714566 |
|
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9 |
727 |
S=2124 I=60 E=0 |
Protein tex ; RNA-binding |
Pubmed 8755871 |
|
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9 |
732 |
S=2057 I=58 E=0 |
Uncharacterized protein NMB0075 ; RNA-binding |
Pubmed 8655518 |
|
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9 |
491 |
S=1200 I=53 E=2.71774e-136 |
Uncharacterized protein in region E ; RNA-binding |
Pubmed 8655518 |
|
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436 |
729 |
S=1153 I=72 E=1.3462e-130 |
Putative uncharacterized protein |
Pubmed 14660376 |
|
![]() |
509 |
732 |
S=780 I=67 E=2.00501e-85 |
Tex protein |
Pubmed 9321671 |
|
![]() |
420 |
723 |
S=735 I=53 E=5.58612e-80 |
YdcI |
Pubmed 10972189 |
|
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359 |
588 |
S=613 I=56 E=3.44507e-65 |
YdcI protein |
Pubmed 9341680 |
|
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10 |
401 |
S=519 I=32 E=9.63393e-54 |
YdcI protein |
Pubmed 9341680 |
|
![]() |
296 |
500 |
S=574 I=57 E=1.70791e-60 |
Putative uncharacterized protein |
Pubmed 11958930 |
|
![]() |
IPR012340 [G3DSA:2.40.50.140] | 655 |
750 |
Nucleic acid-binding, OB-fold |
![]() |
IPR018974 [PF09371] | 14 |
206 |
Tex-like protein, N-terminal |
![]() |
IPR003029 [PF00575] | 651 |
724 |
Ribosomal protein S1, RNA binding domain |
![]() |
IPR006641 [SM00732] | 329 |
428 |
Resolvase, RNase H-like fold |
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[SM00316] | 653 |
724 |
- |
![]() |
IPR003029 [PS50126] | 655 |
724 |
Ribosomal protein S1, RNA binding domain |
![]() |
[seg] | 20 |
30 |
- |
![]() |
[seg] | 57 |
74 |
- |
![]() |
[seg] | 226 |
239 |
- |
![]() |
[seg] | 742 |
757 |
- |
![]() |
[seg] | 769 |
783 |
- |
![]() |
372 |
499 |
S=463 I=72 E=2.02537e-48 |
![]() |
77 |
201 |
S=399 I=69 E=1.39498e-40 |
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297 |
371 |
S=266 I=65 E=1.46309e-24 |
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298 |
583 |
S=220 I=24 E=6.19467e-19 |
![]() |
607 |
655 |
S=184 I=71 E=1.2842e-14 |
![]() |
417 |
577 |
S=174 I=33 E=2.30127e-13 |
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500 |
553 |
S=174 I=59 E=2.38294e-13 |
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566 |
721 |
S=172 I=36 E=3.74983e-13 |
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584 |
614 |
S=154 I=94 E=6.20731e-11 |
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656 |
731 |
S=149 I=48 E=2.19759e-10 |
Access unfiltered results
Miscellaneous analyses
![]() XFF4834R_chr27300 |
![]() DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
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![]() |
![]() XFF4834R_chr27320 |
ID | greB |
AC | XFF4834R_chr27310 |
LT | XFF4834R_chr27310 |
OR | XFF4834R_chr from 3148594 to 3149100 on strand + |
DE | transcription elongation factor |
IP | Transcription elongation factor GreB, prokaryotic |
CL | 2.2.2 Transcription related GO:0006350 |
EC | |
GO |
InterPro DNA-dependent (GO:0006355) Molecular Function: DNA binding (GO:0003677) Molecular Function: transcription elongation regulator activity (GO:0003711) Curated |
PM | |
AN | |
CC | COG: [K] Transcription; |
CC | MODEL: XFF4834R |
CC | STATUS: curated by darrasse (20120315) |
MW | 18829 Da |
SQ | 168 aa |
........10........20........30........40........50 |
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GREA_MF_00105 | raw_score=3168 norm_score=24.332 | Transcription elongation factor greA [greA]. |
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XFF4834R_chr20090 lcl|greA-XFF4834R_chr20090 |
15 |
165 |
S=181 I=33 E=8.94073e-16 |
transcription elongation factor |
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NP_643043.1 lcl|greB-XAC2734 |
1 |
168 |
S=712 I=85 E=1.41889e-79 |
transcription elongation factor GreB |
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YP_364617.1 lcl|greB-XCV2886 |
1 |
168 |
S=703 I=84 E=1.50692e-78 |
transcription elongation factor GreB |
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NP_637911.1 lcl|greB-XCC2563 |
1 |
167 |
S=674 I=80 E=5.70608e-75 |
transcription elongation factor GreB |
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1 |
167 |
S=613 I=72 E=1.16971e-67 |
probable transcription elongation factor greb (transcript cleavage factor greb) protein |
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15 |
165 |
S=188 I=34 E=4.64283e-16 |
probable transcription elongation factor grea (transcript cleavage factor grea) protein |
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NP_637209.1 lcl|greA-XCC1844 |
15 |
165 |
S=181 I=34 E=3.13348e-15 |
transcription elongation factor GreA |
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YP_363641.1 lcl|greA-XCV1910 |
15 |
165 |
S=181 I=33 E=3.21652e-15 |
transcription elongation factor GreA |
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NP_642189.1 lcl|greA-XAC1863 |
15 |
165 |
S=181 I=33 E=3.21652e-15 |
transcription elongation factor GreA |
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12 |
166 |
S=306 I=45 E=6.2424e-29 |
Transcription elongation factor greB ; DNA-binding regulation |
Pubmed 8431948 |
|
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5 |
168 |
S=215 I=40 E=6.40484e-18 |
Transcription elongation factor GreB |
Pubmed 17400765 |
|
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15 |
165 |
S=181 I=34 E=1.04016e-13 |
Transcription elongation factor greA ; Coiled DNA-binding regulation |
Pubmed 10784047 |
|
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15 |
165 |
S=177 I=32 E=3.12033e-13 |
Transcription elongation factor greA ; DNA-binding regulation |
Pubmed 2243801 |
|
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56 |
166 |
S=167 I=33 E=5.44722e-12 |
Transcription elongation factor ; DNA-binding regulation |
Pubmed 15287875 |
|
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56 |
166 |
S=167 I=33 E=5.49492e-12 |
Transcription elongation factor greA ; DNA-binding regulation |
Pubmed 11157937 |
|
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15 |
165 |
S=164 I=28 E=9.85501e-12 |
Transcription elongation factor greA ; DNA-binding regulation |
Pubmed 18700039 |
|
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16 |
163 |
S=161 I=26 E=2.85503e-11 |
Transcription elongation factor greA ; Coiled DNA-binding regulation |
Pubmed 17107561 |
|
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56 |
166 |
S=158 I=33 E=5.2105e-11 |
Transcription elongation factor greA ; DNA-binding regulation |
Pubmed 9756877 |
|
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56 |
165 |
S=156 I=32 E=1.13208e-10 |
Transcription elongation factor ; DNA-binding regulation |
Pubmed 17618403 |
|
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1 |
168 |
S=712 I=85 E=3.28092e-78 |
Transcription elongation factor greB ; DNA-binding regulation |
||
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1 |
167 |
S=674 I=80 E=1.31943e-73 |
Transcription elongation factor greB ; DNA-binding regulation |
||
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IPR001437 [G3DSA:1.10.287.180] | 10 |
84 |
Transcription elongation factor, GreA/GreB region, prokaryotic |
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IPR001437 [G3DSA:3.10.50.30] | 84 |
166 |
Transcription elongation factor, GreA/GreB region, prokaryotic |
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[MF_00105] | 10 |
165 |
- |
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IPR001437 [PF03449] | 9 |
83 |
Transcription elongation factor, GreA/GreB region, prokaryotic |
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IPR001437 [PF01272] | 89 |
165 |
Transcription elongation factor, GreA/GreB region, prokaryotic |
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IPR006358 [TIGR01461] | 11 |
167 |
Transcription elongation factor GreB, prokaryotic |
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IPR018151 [PS00829] | 26 |
57 |
Transcription elongation factor, GreA/GreB, conserved site |
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IPR018151 [PS00830] | 129 |
145 |
Transcription elongation factor, GreA/GreB, conserved site |
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[seg] | 32 |
55 |
- |
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98 |
154 |
S=161 I=54 E=4.36198e-12 |
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59 |
97 |
S=122 I=65 E=2.61971e-07 |
Access unfiltered results
Miscellaneous analyses
![]() XFF4834R_chr31330 |
![]() DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
![]() |
![]() |
![]() XFF4834R_chr31350 |
ID | |
AC | XFF4834R_chr31340 |
LT | XFF4834R_chr31340 |
OR | XFF4834R_chr from 3604325 to 3604927 on strand - |
DE | putative 2'-5' RNA ligase |
IP | 2',5' RNA ligase; Phosphoesterase, HXTX |
CL | 2.2.2 Transcription related GO:0006350 |
EC | |
GO |
InterPro Biological Process: RNA metabolic process (GO:0016070) Molecular Function: 2'-5'-RNA ligase activity (GO:0008664) Curated |
PM | |
AN | Gene ID suppressed |
CC | COG: [J] Translation, ribosomal structure and biogenesis; |
CC | MODEL: XFF4834R |
CC | STATUS: curated by fguerin (20100421) |
MW | 22107 Da |
SQ | 200 aa |
........10........20........30........40........50 |
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NP_641700.1 lcl|XAC1365-XAC1365 |
1 |
200 |
S=1037 I=100 E=6.7273e-119 |
hypothetical protein |
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YP_363152.1 lcl|XCV1421 |
1 |
200 |
S=1007 I=97 E=3.61034e-115 |
hypothetical protein |
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NP_636693.1 lcl|XCC1319 |
1 |
200 |
S=856 I=87 E=6.60483e-97 |
hypothetical protein |
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23 |
200 |
S=337 I=43 E=1.46736e-32 |
Csw019 |
Pubmed 14660379 |
|
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1 |
61 |
S=298 I=97 E=1.11473e-28 |
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62 |
157 |
S=105 I=32 E=3.14047e-05 |
Access unfiltered results
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Set of Uniprot with relevant PubMed cross-references ncbi-blastp |
1 hits |
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Swiss-Prot ncbi-blastp |
0 hits |
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Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp |
1 hits |
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HAMAP scan |
0 hits |
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IprScan |
0 hits |
Miscellaneous analyses
![]() XFF4834R_chr_3339 |
![]() DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
![]() |
![]() |
![]() XFF4834R_chr31590 |
ID | XFF4834R_chr34150806_3627828_f1_XFF4834R-XFF4834R_chr31580 |
AC | XFF4834R_chr31580 |
LT | XFF4834R_chr31580 |
OR | XFF4834R_chr from 3626806 to 3627828 on strand + |
DE | putative mRNA 3'-end processing factor |
IP | |
CL | 2.2.2 Transcription related GO:0006350 |
EC | |
GO |
InterPro Curated |
PM | |
AN | |
CC | COG: [J] Translation, ribosomal structure and biogenesis; |
CC | MODEL: XFF4834R |
CC | STATUS: curated by fguerin (20100421) |
MW | 37707.9 Da |
SQ | 340 aa |
........10........20........30........40........50 |
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NP_641677.1 lcl|XAC1342-XAC1342 |
1 |
340 |
S=1694 I=95 E=0 |
mRNA 3'-end processing factor |
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YP_363126.1 lcl|XCV1395 |
1 |
340 |
S=1692 I=95 E=0 |
mRNA 3'-end processing factor |
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NP_636665.1 lcl|XCC1291 |
1 |
340 |
S=1533 I=87 E=1.19103e-178 |
putative mRNA 3'-end processing factor |
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98 |
204 |
S=127 I=32 E=9.43697e-07 |
Cleavage and polyadenylation specificity factor subunit 3 EC=3.1.27.- ; Endonuclease Hydrolase Isopeptide bond Metal-binding mRNA processing Nucleus |
Pubmed 8929409 |
|
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98 |
204 |
S=127 I=32 E=1.07555e-06 |
Cleavage and polyadenylation specificity factor subunit 3 EC=3.1.27.- ; Endonuclease Hydrolase Isopeptide bond Metal-binding mRNA processin |
Pubmed 14749727 |
|
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98 |
204 |
S=125 I=33 E=1.75257e-06 |
Cleavage and polyadenylation specificity factor 3 |
Pubmed 15256591 |
|
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96 |
204 |
S=122 I=29 E=4.01229e-06 |
Putative uncharacterized protein |
Pubmed 12065505 |
|
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77 |
203 |
S=122 I=30 E=4.57288e-06 |
Endoribonuclease YSH1 EC=3.1.27.- ; Endonuclease Hydrolase Metal-binding mRNA processing Nucleus Phosphoprotein Zinc |
Pubmed 8929409 |
|
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22 |
335 |
S=382 I=34 E=9.36996e-38 |
Probable DNA ligase EC=6.5.1.1 ; ATP-binding Cell cycle division damage recombination repair replication Metal-binding Nucleotide-binding |
||
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92 |
204 |
S=156 I=37 E=2.2293e-10 |
Endoribonuclease ysh1 EC=3.1.27.- ; Endonuclease Hydrolase Metal-binding mRNA processing Nucleus Zinc |
||
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88 |
204 |
S=155 I=36 E=2.94671e-10 |
Endoribonuclease ysh1 EC=3.1.27.- ; Endonuclease Hydrolase Metal-binding mRNA processing Nucleus Zinc |
||
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43 |
203 |
S=138 I=28 E=3.78809e-08 |
Endoribonuclease YSH1 EC=3.1.27.- ; Endonuclease Hydrolase Metal-binding mRNA processing Nucleus Zinc |
||
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92 |
206 |
S=133 I=33 E=1.25075e-07 |
Cleavage and polyadenylation specificity factor subunit 3 EC=3.1.27.- ; Endonuclease Hydrolase Metal-binding mRNA processing Nucleus RNA-bi |
||
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141 |
339 |
S=483 I=51 E=4.61395e-51 |
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14 |
76 |
S=222 I=62 E=2.10398e-19 |
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266 |
340 |
S=172 I=48 E=1.96952e-13 |
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223 |
265 |
S=168 I=74 E=7.15752e-13 |