9 hits
| XFF4834R_chr00030 | recF | XFF4834R_chr00030 | recombination protein F |
| XFF4834R_chr06450 | xerC | XFF4834R_chr06450 | site-specific tyrosine recombinase XerC |
| XFF4834R_chr34460 | xerD | XFF4834R_chr34460 | probable tyrosine recombinase protein, XerD |
| XFF4834R_chr40980 | rdgC | XFF4834R_chr40980 | probable recombination-associated protein RdgC |
| XFF4834R_chr42330 | XFF4834R_chr_4917470_4919152_r3_XFF4834R-XFF4834R_chr42330 | XFF4834R_chr42330 | putative DNA recombination muC homologue protein |
| XFF4834R_chr42430 | XFF4834R_chr_4926531_4927493_f3_XFF4834R-XFF4834R_chr42430 | XFF4834R_chr42430 | resolvase |
| XFF4834R_plb00130 | XFF4834R_plb00090035_0010925_r1_XFF4834R-XFF4834R_plb00130 | XFF4834R_plb00130 | putative resolvase |
| XFF4834R_plb00140 | XFF4834R_plb00100013_0011981_r1_XFF4834R-XFF4834R_plb00140 | XFF4834R_plb00140 | putative resolvase |
| XFF4834R_plc00220 | XFF4834R_plc00160146_0017841_f1_XFF4834R-XFF4834R_plc00220 | XFF4834R_plc00220 | putative resolvase |
XFF4834R_chr_0004 |
DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
|
|
XFF4834R_chr00040 |
| ID | recF |
| AC | XFF4834R_chr00030 |
| LT | XFF4834R_chr00030 |
| OR | XFF4834R_chr from 3740 to 4846 on strand + |
| DE | recombination protein F |
| IP | DNA-binding, RecF; RecF/RecN/SMC protein, N-terminal |
| CL | 2.1.3 DNA recombination GO:0006310 |
| EC | |
| GO |
InterPro Biological Process: DNA repair (GO:0006281) Cellular Component: chromosome (GO:0005694) Molecular Function: ATP binding (GO:0005524) Molecular Function: single-stranded DNA binding (GO:0003697) Curated |
| PM | |
| AN | |
| CC | COG: [L] Replication, recombination and repair; |
| CC | MODEL: acur |
| CC | STATUS: curated by royer (20100323) |
| MW | 40512.6 Da |
| SQ | 368 aa |
........10........20........30........40........50 |
|
1 |
368 |
S=1539 I=80 E=9.59352e-178 |
DNA replication and repair protein recF ; ATP-binding Cytoplasm damage DNA-binding Nucleotide-binding SOS response |
Pubmed 12039751 |
|
|
||||||
|
|
1 |
361 |
S=442 I=33 E=8.21882e-45 |
DNA replication and repair protein recF ; ATP-binding Cytoplasm damage DNA-binding Nucleotide-binding SOS response |
Pubmed 2172087 |
|
|
||||||
|
|
1 |
362 |
S=438 I=33 E=2.25966e-44 |
DNA replication and repair protein recF ; ATP-binding Cytoplasm damage DNA-binding Nucleotide-binding SOS response |
||
|
||||||
|
|
1 |
362 |
S=428 I=32 E=3.49146e-43 |
DNA replication and repair protein recF ; ATP-binding Cytoplasm damage DNA-binding Nucleotide-binding SOS response |
Pubmed 1542576 |
|
|
||||||
|
|
1 |
337 |
S=409 I=33 E=8.19141e-41 |
DNA replication and repair protein recF ; ATP-binding Cytoplasm damage DNA-binding Nucleotide-binding SOS response |
Pubmed 1741300 |
|
|
||||||
|
|
1 |
363 |
S=405 I=33 E=2.37308e-40 |
DNA replication and repair protein recF ; ATP-binding Cytoplasm damage DNA-binding Nucleotide-binding SOS response |
||
|
||||||
|
|
1 |
362 |
S=297 I=28 E=2.67544e-27 |
DNA replication and repair protein recF ; ATP-binding Cytoplasm damage DNA-binding Nucleotide-binding SOS response |
Pubmed 18281406 |
|
|
||||||
|
|
1 |
338 |
S=283 I=28 E=1.62495e-25 |
DNA replication and repair protein recF ; ATP-binding Cytoplasm damage DNA-binding Nucleotide-binding SOS response |
Pubmed 10427704 |
|
|
||||||
|
|
1 |
338 |
S=276 I=26 E=1.16571e-24 |
DNA replication and repair protein recF ; ATP-binding Cytoplasm damage DNA-binding Nucleotide-binding SOS response |
||
|
||||||
|
|
1 |
340 |
S=270 I=24 E=4.9562e-24 |
DNA replication and repair protein recF ; ATP-binding Cytoplasm damage DNA-binding Nucleotide-binding SOS response |
Pubmed 17592475 |
|
|
||||||
|
1 |
368 |
S=1710 I=90 E=0 |
DNA replication and repair protein recF ; ATP-binding Cytoplasm damage DNA-binding Nucleotide-binding SOS response |
||
|
||||||
|
|
1 |
368 |
S=1654 I=87 E=0 |
DNA replication and repair protein recF ; ATP-binding Cytoplasm damage DNA-binding Nucleotide-binding SOS response |
||
|
||||||
|
|
1 |
368 |
S=1612 I=85 E=0 |
DNA replication and repair protein recF ; ATP-binding Cytoplasm damage DNA-binding Nucleotide-binding SOS response |
||
|
||||||
|
|
1 |
361 |
S=1601 I=85 E=0 |
DNA replication and repair protein recF ; ATP-binding Cytoplasm damage DNA-binding Nucleotide-binding SOS response |
||
|
||||||
|
|
1 |
368 |
S=1545 I=80 E=1.15425e-178 |
DNA replication and repair protein recF ; ATP-binding Cytoplasm damage DNA-binding Nucleotide-binding SOS response |
||
|
||||||
 |
[G3DSA:3.40.50.300] | 1 |
66 |
- |
|
IPR003395 [PF02463] | 3 |
340 |
RecF/RecN/SMC protein, N-terminal |
|
IPR001238 [TIGR00611] | 1 |
361 |
DNA-binding, RecF |
|
[seg] | 76 |
89 |
- |
|
[seg] | 236 |
248 |
- |
|
168 |
234 |
S=297 I=84 E=1.70132e-28 |
|
|
47 |
167 |
S=164 I=38 E=2.19971e-12 |
|
|
249 |
362 |
S=163 I=38 E=2.9076e-12 |
|
[SSF52540] | 1 |
337 |
- |
Suggestions Access unfiltered results
|
|
Set of Uniprot with relevant PubMed cross-references ncbi-blastp |
43 hits |
|
|
Swiss-Prot ncbi-blastp |
386 hits |
|
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp |
0 hits |
|
HAMAP scan |
0 hits |
|
|
IprScan |
6 hits |
Miscellaneous analyses
|
XFF4834R_chr06440 |
DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
|
|
XFF4834R_chr06460 |
| ID | xerC |
| AC | XFF4834R_chr06450 |
| LT | XFF4834R_chr06450 |
| OR | XFF4834R_chr from 734300 to 735217 on strand + |
| DE | site-specific tyrosine recombinase XerC |
| IP | Integrase, catalytic core, phage; Integrase, N-terminal SAM-like, phage |
| CL | 2.1.3 DNA recombination GO:0006310 |
| EC | |
| GO |
InterPro Biological Process: cell division (GO:0051301) Biological Process: chromosome segregation (GO:0007059) Biological Process: cell cycle (GO:0007049) Biological Process: DNA recombination (GO:0006310) Biological Process: DNA integration (GO:0015074) Molecular Function: DNA binding (GO:0003677) Curated |
| PM | |
| AN | |
| CC | COG: [L] Replication, recombination and repair; |
| CC | MODEL: XFF4834R |
| CC | STATUS: curated by royer (20101103) |
| MW | 33783.1 Da |
| SQ | 305 aa |
........10........20........30........40........50 |
|
XERC_MF_01808 | raw_score=6159 norm_score=35.365 | Tyrosine recombinase xerC [xerC]. |
|
|
XFF4834R_chr34460 lcl|xerD-XFF4834R_chr34460 |
2 |
296 |
S=403 I=36 E=2.30838e-42 |
site-specific tyrosine recombinase |
|
|
XFF4834R_chr25960 lcl|XFF4834R_chr28450106_3001756_f2_XFF4834R-XFF4834R_chr25960 |
150 |
288 |
S=99 I=27 E=1.63521e-05 |
|
NP_640989.1 lcl|xerC-XAC0636 |
1 |
296 |
S=1510 I=99 E=6.05112e-176 |
site-specific tyrosine recombinase XerC |
|
|
YP_362422.1 lcl|xerC-XCV0691 |
1 |
296 |
S=1497 I=98 E=2.12192e-174 |
site-specific tyrosine recombinase XerC |
|
|
NP_638843.1 lcl|xerC-XCC3497 |
1 |
296 |
S=1303 I=85 E=7.36938e-151 |
site-specific tyrosine recombinase XerC |
|
|
4 |
296 |
S=1149 I=78 E=3.64256e-132 |
probable tyrosine recombinase protein |
|
|
2 |
296 |
S=415 I=37 E=2.67235e-43 |
probable tyrosine recombinase protein |
|
|
NP_636046.1 lcl|xerD-XCC0654 |
3 |
296 |
S=412 I=38 E=7.94705e-43 |
site-specific tyrosine recombinase XerD |
|
|
YP_365407.1 lcl|xerD-XCV3676 |
2 |
296 |
S=407 I=37 E=2.93888e-42 |
site-specific tyrosine recombinase XerD |
|
|
NP_643858.2 lcl|xerD-XAC3551 |
2 |
296 |
S=404 I=37 E=6.00724e-42 |
site-specific tyrosine recombinase XerD |
|
|
NP_635739.1 lcl|XCC0344 |
236 |
282 |
S=156 I=64 E=7.61009e-12 |
site-specific recombinase |
|
|
NP_635739.1 lcl|XCC0344 |
55 |
187 |
S=106 I=33 E=8.11906e-06 |
site-specific recombinase |
|
|
4 |
296 |
S=1082 I=72 E=1.66877e-122 |
Tyrosine recombinase xerC ; Cell cycle division Chromosome partition Cytoplasm DNA integration recombination DNA-binding |
Pubmed 12050668 |
|
|
||||||
|
|
2 |
296 |
S=731 I=51 E=5.75433e-80 |
Tyrosine recombinase xerC ; Cell cycle division Chromosome partition Cytoplasm DNA integration recombination DNA-binding |
||
|
||||||
|
|
2 |
296 |
S=726 I=55 E=2.51139e-79 |
Tyrosine recombinase xerC ; Cell cycle division Chromosome partition Cytoplasm DNA integration recombination DNA-binding |
Pubmed 7715441 |
|
|
||||||
|
|
4 |
296 |
S=711 I=51 E=1.55214e-77 |
Tyrosine recombinase xerC ; Cell cycle division Chromosome partition Cytoplasm DNA integration recombination DNA-binding |
Pubmed 9370270 |
|
|
||||||
|
|
4 |
296 |
S=677 I=49 E=1.9747e-73 |
Tyrosine recombinase xerC ; Cell cycle division Chromosome partition Cytoplasm DNA integration recombination DNA-binding |
Pubmed 9555916 |
|
|
||||||
|
|
4 |
296 |
S=672 I=51 E=7.628e-73 |
Tyrosine recombinase xerC ; Cell cycle division Chromosome partition Cytoplasm DNA integration recombination DNA-binding |
||
|
||||||
|
|
3 |
296 |
S=669 I=46 E=2.11559e-72 |
Tyrosine recombinase xerC ; Cell cycle division Chromosome partition Cytoplasm DNA integration recombination DNA-binding |
Pubmed 9675854 |
|
|
||||||
|
|
1 |
296 |
S=606 I=42 E=7.12859e-65 |
Tyrosine recombinase xerC ; Cell cycle division Chromosome partition Cytoplasm DNA integration recombination DNA-binding |
Pubmed 10048034 |
|
|
||||||
|
|
4 |
296 |
S=593 I=42 E=3.24708e-63 |
Tyrosine recombinase xerC ; Cell cycle division Chromosome partition Cytoplasm DNA integration recombination DNA-binding |
Pubmed 12050668 |
|
|
||||||
|
|
7 |
296 |
S=554 I=44 E=1.66688e-58 |
Site-specific recombinase XerC ; Cell cycle division Chromosome partition Cytoplasm DNA integration recombination DNA-binding |
Pubmed 15305924 |
|
|
||||||
|
[G3DSA:1.10.150.130] | 4 |
107 |
- |
|
IPR013762 [G3DSA:1.10.443.10] | 118 |
292 |
Integrase-like, catalytic core, phage |
|
[MF_01808] | 1 |
298 |
- |
|
IPR004107 [PF02899] | 4 |
97 |
Integrase, N-terminal SAM-like, phage |
|
IPR002104 [PF00589] | 128 |
289 |
Integrase, catalytic core, phage |
|
IPR011931 [TIGR02224] | 5 |
300 |
Tyrosine recombinase XerC |
|
[seg] | 297 |
304 |
- |
|
|
89 |
253 |
S=191 I=32 E=1.18844e-15 |
|
|
4 |
192 |
S=170 I=30 E=3.78319e-13 |
|
|
26 |
279 |
S=159 I=21 E=7.39702e-12 |
|
|
89 |
296 |
S=154 I=32 E=3.37216e-11 |
|
|
176 |
217 |
S=145 I=67 E=4.53197e-10 |
|
|
254 |
296 |
S=135 I=60 E=5.98539e-09 |
|
|
151 |
279 |
S=130 I=35 E=2.85021e-08 |
|
|
136 |
175 |
S=130 I=57 E=3.02958e-08 |
|
|
93 |
176 |
S=125 I=38 E=1.13017e-07 |
|
|
6 |
124 |
S=118 I=30 E=7.05197e-07 |
Suggestions Access unfiltered results
|
|
Set of Uniprot with relevant PubMed cross-references ncbi-blastp |
370 hits |
|
|
Swiss-Prot ncbi-blastp |
286 hits |
|
|
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp |
2 hits |
|
|
HAMAP scan |
1 hits |
|
|
IprScan |
7 hits |
Miscellaneous analyses
|
XFF4834R_chr_3661 |
DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
|
|
XFF4834R_chr34470 |
| ID | xerD |
| AC | XFF4834R_chr34460 |
| LT | XFF4834R_chr34460 |
| OR | XFF4834R_chr from 3995681 to 3996652 on strand - |
| DE | probable tyrosine recombinase protein, XerD |
| IP | Tyrosine recombinase XerD; Tyrosine recombinase XerD-like |
| CL | 2.1.3 DNA recombination GO:0006310 |
| EC | |
| GO |
InterPro Biological Process: DNA integration (GO:0015074) Biological Process: DNA recombination (GO:0006310) Biological Process: cell division (GO:0051301) Biological Process: cell cycle (GO:0007049) Biological Process: chromosome segregation (GO:0007059) Molecular Function: DNA binding (GO:0003677) Curated |
| PM | |
| AN | |
| CC | COG: [L] Replication, recombination and repair; |
| CC | MODEL: XFF4834R |
| CC | STATUS: curated by pieretti (20101103) |
| MW | 35857.6 Da |
| SQ | 323 aa |
........10........20........30........40........50 |
|
|
XFF4834R_chr06450 xerC-XFF4834R_chr06450 |
25 |
323 |
S=409 I=36 E=4.30929e-43 |
site-specific tyrosine recombinase |
|
|
NP_643858.2 xerD-XAC3551 |
1 |
323 |
S=1634 I=98 E=0 |
site-specific tyrosine recombinase XerD |
|
|
YP_365407.1 xerD-XCV3676 |
1 |
323 |
S=1590 I=96 E=0 |
site-specific tyrosine recombinase XerD |
|
|
NP_636046.1 xerD-XCC0654 |
1 |
323 |
S=1412 I=85 E=4.68148e-164 |
site-specific tyrosine recombinase XerD |
|
|
XALc_2669 xerD-XALc_2669 |
5 |
323 |
S=1216 I=74 E=3.07255e-140 |
probable tyrosine recombinase protein |
|
|
NP_638843.1 xerC-XCC3497 |
18 |
322 |
S=441 I=37 E=2.38604e-46 |
site-specific tyrosine recombinase XerC |
|
|
XALc_2575 xerC-XALc_2575 |
27 |
323 |
S=423 I=37 E=3.81438e-44 |
probable tyrosine recombinase protein |
|
|
YP_362422.1 xerC-XCV0691 |
25 |
323 |
S=410 I=37 E=1.47221e-42 |
site-specific tyrosine recombinase XerC |
|
|
NP_640989.1 xerC-XAC0636 |
25 |
323 |
S=405 I=36 E=5.122e-42 |
site-specific tyrosine recombinase XerC |
|
|
NP_635739.1 XCC0344 |
260 |
307 |
S=134 I=60 E=3.54648e-09 |
site-specific recombinase |
|
|
YP_362087.1 XCV0356 |
238 |
307 |
S=131 I=46 E=7.90963e-09 |
putative integrase |
|
|
1 |
323 |
S=1095 I=65 E=5.86315e-124 |
Tyrosine recombinase xerD ; Cell cycle division Chromosome partition Cytoplasm DNA integration recombination DNA-binding |
Pubmed 12050668 |
|
|
||||||
|
|
20 |
323 |
S=800 I=53 E=3.43129e-88 |
Tyrosine recombinase xerD ; Cell cycle division Chromosome partition Cytoplasm DNA integration recombination DNA-binding |
Pubmed 9675854 |
|
|
||||||
|
|
23 |
323 |
S=791 I=54 E=3.36916e-87 |
Site-specific recombinase ; Cell cycle division Chromosome partition Cytoplasm DNA integration recombination DNA-binding |
Pubmed 15758242 |
|
|
||||||
|
|
23 |
323 |
S=774 I=51 E=4.80887e-85 |
Tyrosine recombinase xerD ; Cell cycle division Chromosome partition Cytoplasm DNA integration recombination DNA-binding |
Pubmed 12050668 |
|
|
||||||
|
|
23 |
323 |
S=749 I=52 E=4.10013e-82 |
Tyrosine recombinase xerD ; Cell cycle division Chromosome partition Cytoplasm DNA integration recombination DNA-binding |
Pubmed 9370270 |
|
|
||||||
|
|
19 |
323 |
S=1542 I=98 E=2.74772e-178 |
Tyrosine recombinase xerD ; Cell cycle division Chromosome partition Cytoplasm DNA integration recombination DNA-binding |
||
|
||||||
|
|
1 |
323 |
S=1412 I=85 E=1.3264e-162 |
Tyrosine recombinase xerD ; Cell cycle division Chromosome partition Cytoplasm DNA integration recombination DNA-binding |
||
|
||||||
|
|
1 |
323 |
S=1095 I=65 E=3.99153e-124 |
Tyrosine recombinase xerD ; Cell cycle division Chromosome partition Cytoplasm DNA integration recombination DNA-binding |
||
|
||||||
|
|
1 |
323 |
S=1093 I=66 E=5.8071e-124 |
Tyrosine recombinase xerD ; Cell cycle division Chromosome partition Cytoplasm DNA integration recombination DNA-binding |
||
|
||||||
|
|
26 |
323 |
S=853 I=58 E=8.3914e-95 |
Tyrosine recombinase xerD ; Cell cycle division Chromosome partition Cytoplasm DNA integration recombination DNA-binding |
||
|
||||||
|
[G3DSA:1.10.150.130] | 22 |
119 |
- |
|
IPR013762 [G3DSA:1.10.443.10] | 130 |
317 |
Integrase-like, catalytic core, phage |
|
[MF_01807] | 23 |
323 |
- |
|
[MF_01808] | 23 |
323 |
- |
|
IPR002104 [PF00589] | 130 |
311 |
Integrase, catalytic core, phage |
|
IPR004107 [PF02899] | 27 |
104 |
Integrase, N-terminal SAM-like, phage |
|
IPR011932 [TIGR02225] | 28 |
323 |
Tyrosine recombinase XerD |
|
|
30 |
180 |
S=174 I=31 E=1.43516e-13 |
|
|
27 |
212 |
S=173 I=29 E=1.91362e-13 |
|
|
101 |
278 |
S=163 I=33 E=3.06172e-12 |
|
|
1 |
43 |
S=156 I=72 E=2.23505e-11 |
|
|
19 |
219 |
S=144 I=32 E=5.57838e-10 |
|
|
101 |
322 |
S=142 I=32 E=1.11082e-09 |
|
|
149 |
188 |
S=136 I=70 E=5.77154e-09 |
|
|
243 |
278 |
S=129 I=67 E=3.60129e-08 |
|
|
161 |
305 |
S=129 I=32 E=4.4395e-08 |
|
|
101 |
148 |
S=127 I=50 E=6.98606e-08 |
|
IPR011010 [SSF56349] | 125 |
321 |
DNA breaking-rejoining enzyme, catalytic core |
|
IPR010998 [SSF47823] | 23 |
133 |
Integrase, Lambda-type, N-terminal |
Suggestions Access unfiltered results
|
|
Set of Uniprot with relevant PubMed cross-references ncbi-blastp |
311 hits |
|
|
Swiss-Prot ncbi-blastp |
344 hits |
|
|
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp |
2 hits |
|
|
HAMAP scan |
0 hits |
|
|
IprScan |
9 hits |
Miscellaneous analyses
|
XFF4834R_chr40970 |
DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
|
|
XFF4834R_chr40990 |
| ID | rdgC |
| AC | XFF4834R_chr40980 |
| LT | XFF4834R_chr40980 |
| OR | XFF4834R_chr from 4755340 to 4756245 on strand - |
| DE | probable recombination-associated protein RdgC |
| IP | Putative exonuclease, RdgC |
| CL | 2.1.3 DNA recombination GO:0006310 |
| EC | |
| GO |
InterPro Biological Process: DNA recombination (GO:0006310) Curated |
| PM | |
| AN | |
| CC | COG: [L] Replication, recombination and repair; |
| CC | MODEL: XFF4834R |
| CC | STATUS: curated by pieretti (20101104) |
| MW | 33395.9 Da |
| SQ | 301 aa |
........10........20........30........40........50 |
|
RDGC_MF_00194 | raw_score=7619 norm_score=40.209 | Recombination-associated protein rdgC [rdgC]. |
|
|
YP_366058.1 lcl|rdgC-XCV4327 |
1 |
301 |
S=1435 I=94 E=8.73105e-167 |
recombination associated protein |
|
|
NP_644522.1 lcl|rdgC-XAC4223 |
1 |
301 |
S=1432 I=94 E=1.76919e-166 |
recombination associated protein |
|
|
NP_639437.1 lcl|rdgC-XCC4098 |
1 |
301 |
S=1416 I=92 E=1.59078e-164 |
recombination associated protein |
|
|
1 |
301 |
S=1309 I=85 E=1.40498e-151 |
probable recombination-associated protein rdgc. |
|
|
YP_361693.1 lcl|rdgC-XCVd0134 |
2 |
301 |
S=1182 I=75 E=3.12159e-136 |
recombination associated protein |
|
|
1 |
288 |
S=418 I=32 E=5.05524e-42 |
Recombination-associated protein rdgC ; Cytoplasm DNA |
Pubmed 8807285 |
|
|
||||||
|
|
3 |
295 |
S=406 I=32 E=1.2079e-40 |
HrdC |
Pubmed 15489417 |
|
|
||||||
|
|
1 |
289 |
S=391 I=29 E=8.96527e-39 |
ORF10 |
Pubmed 12452967 |
|
|
||||||
|
|
1 |
269 |
S=391 I=32 E=9.95408e-39 |
Recombination-associated protein rdgC ; Cytoplasm DNA |
Pubmed 10655208 |
|
|
||||||
|
|
31 |
295 |
S=390 I=37 E=1.28177e-38 |
RdgC exonuclease |
Pubmed 15716012 |
|
|
||||||
|
|
1 |
287 |
S=370 I=32 E=3.1687e-36 |
Recombination-associated protein rdgC ; Cytoplasm DNA |
Pubmed 10675023 |
|
|
||||||
|
|
4 |
277 |
S=350 I=31 E=9.00609e-34 |
Recombination associate protein ; Cytoplasm DNA Plasmid |
Pubmed 17921277 |
|
|
||||||
|
|
1 |
301 |
S=1432 I=94 E=4.5551e-165 |
Recombination-associated protein rdgC ; Cytoplasm DNA |
||
|
||||||
|
|
1 |
301 |
S=1422 I=93 E=7.88289e-164 |
Recombination-associated protein rdgC ; Cytoplasm DNA |
||
|
||||||
|
|
1 |
301 |
S=1416 I=92 E=4.09576e-163 |
Recombination-associated protein rdgC ; Cytoplasm DNA |
||
|
||||||
|
|
1 |
301 |
S=1416 I=92 E=4.09576e-163 |
Recombination-associated protein rdgC ; Cytoplasm DNA |
||
|
||||||
|
|
1 |
301 |
S=1416 I=92 E=4.09576e-163 |
Recombination-associated protein rdgC ; Cytoplasm DNA |
||
|
||||||
|
[MF_00194] | 1 |
300 |
- |
|
IPR007476 [PF04381] | 1 |
300 |
Putative exonuclease, RdgC |
|
[seg] | 180 |
194 |
- |
|
|
69 |
178 |
S=234 I=51 E=7.38443e-21 |
|
|
220 |
288 |
S=178 I=57 E=4.62481e-14 |
Suggestions Access unfiltered results
|
|
Set of Uniprot with relevant PubMed cross-references ncbi-blastp |
7 hits |
|
|
Swiss-Prot ncbi-blastp |
127 hits |
|
|
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp |
0 hits |
|
|
HAMAP scan |
1 hits |
|
|
IprScan |
3 hits |
Miscellaneous analyses
|
XFF4834R_chr42320 |
DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
|
|
XFF4834R_chr_4612 |
| ID | XFF4834R_chr_4917470_4919152_r3_XFF4834R-XFF4834R_chr42330 |
| AC | XFF4834R_chr42330 |
| LT | XFF4834R_chr42330 |
| OR | XFF4834R_chr from 4917470 to 4919152 on strand - |
| DE | putative DNA recombination muC homologue protein |
| IP | RmuC |
| CL | 2.1.3 DNA recombination GO:0006310 |
| EC | |
| GO |
InterPro Curated |
| PM | |
| AN | |
| CC | COG: [S] Function unknown; |
| CC | MODEL: XFF4834R |
| CC | STATUS: curated by jacques (20100916) |
| MW | 62639.4 Da |
| SQ | 560 aa |
........10........20........30........40........50 |
|
|
NP_644642.2 lcl|XAC4348-XAC4348 |
59 |
540 |
S=2280 I=93 E=0 |
hypothetical protein |
|
|
NP_639549.2 lcl|XCC4215 |
59 |
540 |
S=2173 I=89 E=0 |
hypothetical protein |
|
|
YP_366190.1 lcl|XCV4459 |
81 |
540 |
S=2161 I=92 E=0 |
RmuC family DNA recombination protein |
|
|
64 |
540 |
S=1789 I=74 E=0 |
hypothetical protein |
|
|
297 |
512 |
S=136 I=24 E=1.73131e-07 |
RmuC family protein |
Pubmed 17675438 |
|
|
||||||
|
|
284 |
525 |
S=128 I=26 E=1.32017e-06 |
DNA recombination protein rmuC ; Coiled |
||
|
||||||
|
|
160 |
540 |
S=1441 I=74 E=7.31974e-166 |
DNA recombination protein rmuC homolog ; Coiled |
||
|
||||||
|
|
59 |
140 |
S=223 I=60 E=2.70501e-18 |
DNA recombination protein rmuC homolog ; Coiled |
||
|
||||||
|
|
160 |
540 |
S=1438 I=73 E=2.0301e-165 |
DNA recombination protein rmuC homolog ; Coiled |
||
|
||||||
|
|
59 |
140 |
S=224 I=60 E=2.6123e-18 |
DNA recombination protein rmuC homolog ; Coiled |
||
|
||||||
|
|
280 |
514 |
S=161 I=29 E=9.8587e-11 |
DNA recombination protein rmuC homolog ; Coiled |
||
|
||||||
|
[coil] | 231 |
252 |
- |
|
IPR003798 [PF02646] | 246 |
546 |
RmuC |
|
[seg] | 40 |
58 |
- |
|
[seg] | 141 |
155 |
- |
|
[seg] | 184 |
195 |
- |
|
[seg] | 541 |
558 |
- |
|
[tmhmm] | 40 |
57 |
- |
|
|
394 |
529 |
S=285 I=48 E=5.03748e-27 |
|
|
59 |
114 |
S=254 I=93 E=2.75102e-23 |
|
|
196 |
270 |
S=250 I=72 E=9.99761e-23 |
|
|
115 |
183 |
S=214 I=68 E=2.42476e-18 |
|
|
309 |
383 |
S=155 I=48 E=3.35751e-11 |
|
|
271 |
307 |
S=137 I=76 E=4.75064e-09 |
|
|
398 |
464 |
S=124 I=33 E=1.59483e-07 |
|
|
228 |
307 |
S=122 I=34 E=3.34631e-07 |
|
|
390 |
413 |
S=118 I=100 E=9.20029e-07 |
|
|
253 |
390 |
S=118 I=25 E=1.05776e-06 |
Suggestions Access unfiltered results
|
|
Set of Uniprot with relevant PubMed cross-references ncbi-blastp |
2 hits |
|
|
Swiss-Prot ncbi-blastp |
14 hits |
|
|
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp |
0 hits |
|
|
HAMAP scan |
0 hits |
|
|
IprScan |
7 hits |
Miscellaneous analyses
|
XFF4834R_chr42420 |
DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
|
|
XFF4834R_chr42440 |
| ID | XFF4834R_chr_4926531_4927493_f3_XFF4834R-XFF4834R_chr42430 |
| AC | XFF4834R_chr42430 |
| LT | XFF4834R_chr42430 |
| OR | XFF4834R_chr from 4926531 to 4927493 on strand + |
| DE | resolvase |
| IP | Recombinase, conserved site |
| CL | 2.1.3 DNA recombination GO:0006310 |
| EC | |
| GO |
InterPro Biological Process: DNA recombination (GO:0006310) Molecular Function: DNA binding (GO:0003677) Molecular Function: recombinase activity (GO:0000150) Curated |
| PM | |
| AN | |
| CC | COG: [L] Replication, recombination and repair; |
| CC | MODEL: XFF4834R |
| CC | STATUS: curated by royer (20101104) |
| MW | 36278.8 Da |
| SQ | 320 aa |
........10........20........30........40........50 |
|
|
XFF4834R_plb00140 lcl|XFF4834R_plb00100013_0011981_r1_XFF4834R-XFF4834R_plb00140 |
1 |
320 |
S=1595 I=96 E=0 |
|
|
XFF4834R_plb00130 lcl|XFF4834R_plb00090035_0010925_r1_XFF4834R-XFF4834R_plb00130 |
25 |
320 |
S=1473 I=94 E=5.5484e-172 |
|
|
XFF4834R_plc00220 lcl|XFF4834R_plc00160146_0017841_f1_XFF4834R-XFF4834R_plc00220 |
6 |
197 |
S=255 I=36 E=1.8307e-24 |
|
|
YP_361524.1 lcl|tnpR-XCVc0008 |
1 |
320 |
S=1587 I=95 E=0 |
resolvase |
|
|
YP_361665.1 lcl|XCVd0106 |
182 |
320 |
S=525 I=71 E=1.42093e-56 |
putative resolvase |
|
|
NP_642748.1 lcl|parA-XAC2433 |
4 |
197 |
S=278 I=37 E=1.1845e-26 |
resolvase |
|
|
4 |
193 |
S=260 I=36 E=1.89357e-24 |
putative resolvase protein |
|
|
YP_361668.1 lcl|tnpR-XCVd0109 |
7 |
312 |
S=150 I=26 E=3.79553e-11 |
Tn5045 resolvase |
|
|
YP_361556.1 lcl|XCVc0040 |
7 |
312 |
S=150 I=26 E=3.79553e-11 |
site-specific recombinase / resolvase family protein |
|
|
YP_361512.1 lcl|tnpR-XCVb0018 |
7 |
312 |
S=150 I=26 E=3.79553e-11 |
Tn5045 resolvase |
|
|
NP_644799.1 lcl|tnpR-XACb0071 |
7 |
312 |
S=150 I=26 E=3.79553e-11 |
Tn5045 resolvase |
|
|
NP_644724.1 lcl|tnpR-XACa0038 |
7 |
312 |
S=150 I=26 E=3.79553e-11 |
Tn5045 resolvase |
|
|
2 |
208 |
S=636 I=60 E=1.77036e-68 |
Resolvase ; Plasmid |
||
|
||||||
|
|
2 |
203 |
S=628 I=60 E=1.98117e-67 |
Putative resolvase ; Plasmid |
Pubmed 17936903 |
|
|
||||||
|
|
4 |
197 |
S=443 I=47 E=4.30047e-45 |
Res protein ; Plasmid |
Pubmed 12534468 |
|
|
||||||
|
|
4 |
197 |
S=440 I=47 E=1.1721e-44 |
Putative Res ; Plasmid |
Pubmed 10974112 |
|
|
||||||
|
|
4 |
197 |
S=438 I=49 E=1.89331e-44 |
Putative resolvase ; Plasmid |
Pubmed 10880434 |
|
|
||||||
|
|
4 |
197 |
S=430 I=48 E=1.68902e-43 |
Putative resolvase ; Plasmid |
||
|
||||||
|
|
4 |
204 |
S=427 I=45 E=3.79996e-43 |
Putative resolvase |
Pubmed 15883889 |
|
|
||||||
|
|
4 |
197 |
S=425 I=47 E=8.18449e-43 |
Putative resolvase ; Plasmid |
Pubmed 15288784 |
|
|
||||||
|
|
4 |
197 |
S=425 I=47 E=8.18449e-43 |
Putative resolvase ; Plasmid |
Pubmed 10719200 |
|
|
||||||
|
|
4 |
173 |
S=416 I=48 E=8.46788e-42 |
Putative resolvase |
Pubmed 16159784 |
|
|
||||||
|
|
4 |
197 |
S=315 I=41 E=1.12936e-29 |
Resolvase ; DNA integration recombination DNA-binding Plasmid partition |
||
|
||||||
|
IPR006119 [G3DSA:3.40.50.1390] | 3 |
143 |
Resolvase, N-terminal |
|
IPR006119 [PF00239] | 5 |
160 |
Resolvase, N-terminal |
|
IPR006119 [SM00857] | 5 |
160 |
Resolvase, N-terminal |
|
IPR006118 [PS00397] | 8 |
16 |
Recombinase, conserved site |
|
[seg] | 93 |
102 |
- |
|
|
223 |
312 |
S=206 I=47 E=1.94658e-17 |
|
|
42 |
90 |
S=158 I=65 E=1.03387e-11 |
|
|
4 |
40 |
S=125 I=62 E=1.31534e-07 |
|
|
197 |
222 |
S=114 I=96 E=2.59432e-06 |
|
|
103 |
141 |
S=114 I=60 E=2.59432e-06 |
|
|
147 |
197 |
S=107 I=51 E=1.69091e-05 |
|
|
182 |
211 |
S=105 I=70 E=3.42633e-05 |
Suggestions Access unfiltered results
|
|
Set of Uniprot with relevant PubMed cross-references ncbi-blastp |
95 hits |
|
|
Swiss-Prot ncbi-blastp |
5 hits |
|
|
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp |
3 hits |
|
|
HAMAP scan |
0 hits |
|
|
IprScan |
5 hits |
Miscellaneous analyses
|
XFF4834R_plb00120 |
DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
|
|
XFF4834R_plb00140 |
| ID | XFF4834R_plb00090035_0010925_r1_XFF4834R-XFF4834R_plb00130 |
| AC | XFF4834R_plb00130 |
| LT | XFF4834R_plb00130 |
| OR | XFF4834R_plb from 10035 to 10925 on strand - |
| DE | putative resolvase |
| IP | Resolvase, N-terminal |
| CL | 2.1.3 DNA recombination GO:0006310 |
| EC | |
| GO |
InterPro Biological Process: DNA recombination (GO:0006310) Molecular Function: DNA binding (GO:0003677) Molecular Function: recombinase activity (GO:0000150) Curated |
| PM | |
| AN | |
| CC | COG: [L] Replication, recombination and repair; |
| CC | MODEL: XFF4834R |
| CC | STATUS: curated by royer (20101104) |
| MW | 33500.7 Da |
| SQ | 296 aa |
........10........20........30........40........50 |
|
|
XFF4834R_chr42430 lcl|XFF4834R_chr_4926531_4927493_f3_XFF4834R-XFF4834R_chr42430 |
1 |
296 |
S=1473 I=97 E=5.05897e-172 |
|
|
XFF4834R_plb00140 lcl|XFF4834R_plb00100013_0011981_r1_XFF4834R-XFF4834R_plb00140 |
1 |
296 |
S=1455 I=97 E=6.73428e-170 |
|
|
XFF4834R_plc00220 lcl|XFF4834R_plc00160146_0017841_f1_XFF4834R-XFF4834R_plc00220 |
3 |
173 |
S=245 I=37 E=3.12447e-23 |
|
|
YP_361524.1 lcl|tnpR-XCVc0008 |
1 |
296 |
S=1552 I=99 E=0 |
resolvase |
|
|
YP_361665.1 lcl|XCVd0106 |
158 |
296 |
S=525 I=71 E=1.30262e-56 |
putative resolvase |
|
|
NP_642748.1 lcl|parA-XAC2433 |
9 |
173 |
S=260 I=38 E=1.8776e-24 |
resolvase |
|
|
5 |
169 |
S=247 I=37 E=6.24854e-23 |
putative resolvase protein |
|
|
YP_361668.1 lcl|tnpR-XCVd0109 |
16 |
288 |
S=172 I=27 E=9.26176e-14 |
Tn5045 resolvase |
|
|
YP_361556.1 lcl|XCVc0040 |
16 |
288 |
S=172 I=27 E=9.26176e-14 |
site-specific recombinase / resolvase family protein |
|
|
YP_361512.1 lcl|tnpR-XCVb0018 |
16 |
288 |
S=172 I=27 E=9.26176e-14 |
Tn5045 resolvase |
|
|
NP_644799.1 lcl|tnpR-XACb0071 |
16 |
288 |
S=172 I=27 E=9.26176e-14 |
Tn5045 resolvase |
|
|
NP_644724.1 lcl|tnpR-XACa0038 |
16 |
288 |
S=172 I=27 E=9.26176e-14 |
Tn5045 resolvase |
|
|
YP_364169.1 lcl|XCV2438 |
213 |
289 |
S=97 I=30 E=9.03351e-05 |
cointegrate resolution protein S |
|
|
1 |
186 |
S=607 I=61 E=5.43799e-65 |
Resolvase ; Plasmid |
||
|
||||||
|
|
1 |
179 |
S=593 I=62 E=2.61004e-63 |
Putative resolvase ; Plasmid |
Pubmed 17936903 |
|
|
||||||
|
|
1 |
173 |
S=404 I=46 E=2.04106e-40 |
Putative Res ; Plasmid |
Pubmed 10974112 |
|
|
||||||
|
|
1 |
173 |
S=401 I=45 E=5.9648e-40 |
Res protein ; Plasmid |
Pubmed 12534468 |
|
|
||||||
|
|
1 |
173 |
S=400 I=48 E=6.91777e-40 |
Putative resolvase ; Plasmid |
Pubmed 10880434 |
|
|
||||||
|
|
1 |
173 |
S=395 I=47 E=2.94121e-39 |
Putative resolvase ; Plasmid |
||
|
||||||
|
|
1 |
173 |
S=389 I=47 E=1.40059e-38 |
Putative resolvase ; Plasmid |
Pubmed 15288784 |
|
|
||||||
|
|
1 |
173 |
S=389 I=47 E=1.40059e-38 |
Putative resolvase ; Plasmid |
Pubmed 10719200 |
|
|
||||||
|
|
4 |
173 |
S=381 I=45 E=1.2604e-37 |
Putative resolvase |
Pubmed 15883889 |
|
|
||||||
|
|
1 |
149 |
S=379 I=48 E=2.26051e-37 |
Putative resolvase |
Pubmed 16159784 |
|
|
||||||
|
IPR006119 [G3DSA:3.40.50.1390] | 6 |
119 |
Resolvase, N-terminal |
|
IPR006119 [PF00239] | 3 |
136 |
Resolvase, N-terminal |
|
IPR006119 [SM00857] | 2 |
136 |
Resolvase, N-terminal |
|
|
198 |
288 |
S=204 I=45 E=2.857e-17 |
|
|
18 |
72 |
S=168 I=64 E=8.61679e-13 |
|
|
73 |
117 |
S=129 I=57 E=4.01889e-08 |
|
|
173 |
198 |
S=110 I=96 E=7.51639e-06 |
|
|
158 |
188 |
S=107 I=68 E=1.75106e-05 |
|
|
123 |
173 |
S=107 I=51 E=1.94419e-05 |
|
|
54 |
129 |
S=101 I=36 E=9.58669e-05 |
Suggestions
