Xanthomonas fuscans subsp. fuscans

6 hits

XFF4834R_chr13520 XFF4834R_chr13520 putative DNA methylase N-terminal fragment, pseudogene
XFF4834R_chr28660 XFF4834R_chr31210385_3299353_f2_XFF4834R-XFF4834R_chr28660 XFF4834R_chr28660 putative restriction endonuclease, type IV-like
XFF4834R_chr33750 XFF4834R_chr36570333_3896512_r3_XFF4834R-XFF4834R_chr33750 XFF4834R_chr33750 probable type I restriction-modification system endonuclease
XFF4834R_chr42740 XFF4834R_chr_4951849_4952112_f1_XFF4834R-XFF4834R_chr42740 XFF4834R_chr42740 putative Type-2 restriction endonuclease BsuBI/PstI
XFF4834R_plc00240 XFF4834R_plc00240 Probable Type II restriction endonuclease XcyI
XFF4834R_plc00430 XFF4834R_plc_0036603_0037172_f3_XFF4834R-XFF4834R_plc00430 XFF4834R_plc00430 putative restriction endonuclease protein

XFF4834R_chr13520

DrawMap

XML file

FASTA file

Extract
Sequence

ID
AC	XFF4834R_chr13520
LO	XFF4834R_chr13520
DE	putative DNA methylase N-terminal fragment, pseudogene
CL	2.1.2 DNA restriction/modification GO:0006304 GO:0009307
GO	InterPro Curated
PM
AN	The pseudogene XFF4834R_chr13520 replaces ORF XFF4834R_chr_1460 which corresponded to the N-terminal fragment (8%) of a putative DNA methylase (XCV2165) predicted in Xav.
CC	MODEL:
CC	STATUS: curated by darrasse (20120413)
SQ	306 nt
	........10........20........30........40........50 \| \| \| \| \| ATGAACGCAGTTGAGATTGAAGAGGCACTATCAGCTCTGGCTGAGGCCCC GTTTGAGCCGGCAGAATTCCCATATCAATTCCTGACAGCGTTTGGGAACA AAGACACCACTATCAAGCGTCTGCGAAAGGGGGATAGCAACGCGTCCGAC GTTCCGGGCGCTGTCTTGCAACGAAGCAACATCCATCTGGCCACCTGTGC CCCAGGAAAGGTCCACGAGACCTTGCAAGTGTTGCGCGAGAGTCCTCGGA ATCTGCCAGCCAAAGCCAAGTTCATCCTGGCGGAGCGTGTGCAGAATTTT GTGTAA

Domain decomposition

[seg]

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Move your mouse over each field to get more informations
ID
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	Your email
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Access unfiltered results

	Set of Uniprot with relevant PubMed cross-references ncbi-blastx	0 hits
	Swiss-Prot ncbi-blastx	0 hits
	Xanthomonas fuscans subsp. fuscans proteome ncbi-blastx	0 hits
	IprScan	2 hits

Miscellaneous analyses

ERROR Tag PERLLIB Portal/Tools.pl GetLocalBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WB6ksgGG/XFF4834R_chr13520.xml_fasta", "https://iant.toulouse.inra.fr/bacteria/annotation/web/img/XFF4834R.png"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

ERROR Tag PERLLIB Portal/Tools.pl GetNcbiBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WB6ksgGG/XFF4834R_chr13520.xml_fasta", "blastx"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

ERROR Tag PERLLIB Portal/Tools.pl GetUniprotBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WB6ksgGG/XFF4834R_chr13520.xml_fasta"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

ERROR Tag PERLLIB Portal/Tools.pl GetKeggBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WB6ksgGG/XFF4834R_chr13520.xml_fasta", "blastx"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

XFF4834R_chr31210385_3299353_f2_XFF4834R-XFF4834R_chr28660 XFF4834R_chr28660

ID	XFF4834R_chr31210385_3299353_f2_XFF4834R-XFF4834R_chr28660
AC	XFF4834R_chr28660
LT	XFF4834R_chr28660
OR	XFF4834R_chr from 3298361 to 3299353 on strand +
DE	putative restriction endonuclease, type IV-like
IP	Restriction endonuclease, type IV-like, Mrr
CL	2.1.2 DNA restriction/modification GO:0006304 GO:0009307
EC
GO	InterPro Biological Process: DNA restriction-modification system (GO:0009307) Molecular Function: endonuclease activity (GO:0004519) Molecular Function: DNA binding (GO:0003677) Curated
PM
AN	modification du start, en accord avec usage du code, force du start et alignements autres xanthos
CC	COG: [S] Function unknown;
CC	MODEL: XFF4834R
CC	STATUS: curated by darrasse (20120404)
MW	35304.6 Da
SQ	330 aa
	........10........20........30........40........50 \| \| \| \| \| MPSWILAPLAALLLWLAVSAYLWLVRRRANEVHEGVRALAIMHWRDFSAV VLRVLQDQRGWQPTQLPQDGLPTADFMMQTEHGTRLVACKHGRGYRIGVA AVNELGAMARLAGANGGVMVTEGRMEREGIAAAEKQSIEVLDGVRLWPLL KPYLPGDVEAGVVGAARRRAIRHSIIAGAALATLAVMAVLTLRPPAPTPA TPRTAVSSPVPAPARVTAAATPSAGTAQPGPSPTAVPAAAPAPGAEPDAA TIQGYQREVSKALAQTPGLVRGIWLTQATLVVDRTVEDSAAWPLICRELE RHPYLRTVRVQLNPRPGTAEPVRWRQCSTI

YP_363414.1 XCV1683

159

S=707 I=100 E=1.57397e-78

hypothetical protein

YP_363414.1 XCV1683

251

330

S=412 I=98 E=7.02979e-43

hypothetical protein

NP_636954.1 XCC1583

159

S=677 I=95 E=6.61733e-75

hypothetical protein

NP_636954.1 XCC1583

251

330

S=378 I=88 E=1.15165e-38

hypothetical protein

NP_641973.1 XAC1641-XAC1641

159

S=673 I=92 E=2.05555e-74

hypothetical protein

NP_641973.1 XAC1641-XAC1641

251

330

S=410 I=98 E=1.17583e-42

hypothetical protein

XALc_1712 XALc_1712

159

S=384 I=54 E=1.9448e-39

putative_membrane_protein_pd-(d/e)xk_nuclease_superfamily

XALc_1712 XALc_1712

253

330

S=275 I=63 E=3.39065e-26

putative_membrane_protein_pd-(d/e)xk_nuclease_superfamily

IPR007560 [PF04471]

146

Restriction endonuclease, type IV-like, Mrr

[seg]

160

224

[seg]

229

250

[SignalP-NN(euk)]

[tmhmm]

170

192

PD607507

159

S=669 I=90 E=1.70863e-73

PD607507

251

330

S=408 I=95 E=6.26546e-42

Suggestions

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ID
DE
EC
GO
PM
CC
CL
	Your email
	Validation code (copy this one Nsk8GLrb)

Access unfiltered results

	Set of Uniprot with relevant PubMed cross-references ncbi-blastp	0 hits
	Swiss-Prot ncbi-blastp	0 hits
	Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp	2 hits
	HAMAP scan	0 hits
	IprScan	7 hits

Miscellaneous analyses

ERROR Tag PERLLIB Portal/Tools.pl GetLocalBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WB6ksgGG/XFF4834R_chr28660.xml_fasta", "https://iant.toulouse.inra.fr/bacteria/annotation/web/img/XFF4834R.png"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

ERROR Tag PERLLIB Portal/Tools.pl GetNcbiBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WB6ksgGG/XFF4834R_chr28660.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

ERROR Tag PERLLIB Portal/Tools.pl GetUniprotBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WB6ksgGG/XFF4834R_chr28660.xml_fasta"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

ERROR Tag PERLLIB Portal/Tools.pl GetKeggBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WB6ksgGG/XFF4834R_chr28660.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

XFF4834R_chr36570333_3896512_r3_XFF4834R-XFF4834R_chr33750 XFF4834R_chr33750

ID	XFF4834R_chr36570333_3896512_r3_XFF4834R-XFF4834R_chr33750
AC	XFF4834R_chr33750
LT	XFF4834R_chr33750
OR	XFF4834R_chr from 3893333 to 3896512 on strand -
DE	probable type I restriction-modification system endonuclease
IP	Restriction endonuclease, type I, EcoRI, R subunit; Restriction endonuclease, type I, R subunit/Type III, Res subunit; Helicase, superfamily 1/2, ATP-binding domain;
CL	2.1.2 DNA restriction/modification GO:0006304 GO:0009307
EC
GO	InterPro Biological Process: DNA restriction-modification system (GO:0009307) Biological Process: DNA modification (GO:0006304) Molecular Function: hydrolase activity (GO:0016787) Molecular Function: Type I site-specific deoxyribonuclease activity (GO:0009035) Molecular Function: ATP binding (GO:0005524) Molecular Function: DNA binding (GO:0003677) Molecular Function: endonuclease activity (GO:0004519) Curated
PM
AN
CC	COG: [V] Defense mechanisms;
CC	MODEL: XFF4834R
CC	STATUS: curated by poussier (20100710)
MW	116789.5 Da
SQ	1059 aa
	........10........20........30........40........50 \| \| \| \| \| MAFLSEAAVEQALLEQLRRLGYSVVSDNTAGPDGSAPERESHDVVVLQQR LADAVTRLNPQLPPEAREDATRKLTQNELPNLLEENRRIHALLTEGVDVE YYADDGVLTAGKVWLLDFDRPENNDWLAVQQFVVISGQTRRRPDVVLFVN GLPLAVIELKSPGSAGANLVGAFNQLQTYKQQIPALFHTNAVLVTSDGIA ARVGSLSADLERFMPWRTTDGRQVLPKGQPELPTLIEGVFAPQRFLELLR WFTAFGETGGGLVKIIAGYHQFHAVNHAVESTIRASRSAVAEDPAKYGLA SVKAQPAGDRRAGVIWHTQGSGKSLLMAFYAGRLVQHPAMRNPTLVVLTD RNDLDDQLFGTFSMCKALLRQTPVQADSREDLAHLLDRASGGVIFTTLQK FGELEAPLTTRRNVVVIADEAHRSQYGLKAKLDAETGVVSYGFAKYMRDA LPNASFIGFTGTPIEATDVNTPALFGHYIDVYDISRAVEDGATVPIYYES RLARIELDEDEKPHLDAEVEALFEGEGTDEKEKLKGRAAAVERLVGSQKR LALVAQDLVTHFEERVAALDGKAMAVCMSREICVDLYTEIIKLRPHWHSD DDTLGAVKIVMTGAASDPPHWQQHIGNKARRDALARRAKDPADPLKLVIV RDMWLTGFDAPSMHTMYVDKPMKGHGLMQAIARVNRVFRDKPAGLIVDYI GIAQNLKSALAQYSPQDKQNTGIDEAQAIAVLREKYEVVRDMYHGFDYLT ALNGTPQQRLAMMAGAIEWILDQQQQWMAAASSDDGKKAAQRRYQDAVLA LSTAYALASASDEALAVREEVGFFQAIREALVKSATGSGISSQERDFAIR QIVSRAVVSTEIVDILKAAGIQSPDISILSDEFLAEVQRMEKKNLALEAL RKLINDGIRSRSKRNIVETKAFSERLEDAIARYHANAITTAEVLQELIRI AKDIRAARARGEEQGLSEDEIAFYDALAENESAVQVMGDDALKVIAHELL VSLKGSASVDWARRDSARARMRVLVKRILRKYGYPPDLQDAAVRTVLQQA EALSAAWSA

NP_638253.1 lcl|XCC2905

722

S=539 I=29 E=1.0879e-57

HsdR protein

NP_641505.1 lcl|XAC1169-XAC1169

1020

1059

S=196 I=98 E=4.35432e-16

hypothetical protein

YP_362240.1 lcl|hsdR1-XCV0509

645

714

S=182 I=51 E=1.96618e-14

type I site-specific deoxyribonuclease (restriction subunit)

YP_362240.1 lcl|hsdR1-XCV0509

313

490

S=152 I=33 E=8.63457e-11

type I site-specific deoxyribonuclease (restriction subunit)

NP_635856.1 lcl|hsdR-XCC0462

645

714

S=173 I=49 E=2.88314e-13

type I restriction-modification system endonuclease

NP_635856.1 lcl|hsdR-XCC0462

313

490

S=149 I=33 E=2.11958e-10

type I restriction-modification system endonuclease

NP_643207.1 lcl|hsdR-XAC2898

144

713

S=137 I=25 E=5.77213e-09

type I restriction-modification system endonuclease

YP_362925.1 lcl|hsdR2-XCV1194

646

713

S=115 I=31 E=2.5816e-06

type I site-specific deoxyribonuclease (restriction subunit)

YP_362925.1 lcl|hsdR2-XCV1194

304

427

S=102 I=35 E=9.21205e-05

type I site-specific deoxyribonuclease (restriction subunit)

Q6EVS7 sp|Q6EVS7|Q6EVS7_YERPS

1059

S=2389 I=47 E=0

Hsdr-like Type I restriction enzyme

Pubmed 12379698,15271940

prodomImg

C1PH85 sp|C1PH85|C1PH85_STAAU

1054

S=2375 I=44 E=0

Type I restriction-modification system endonuclease Type I restriction-modification system endonuclease homologue

Pubmed 18926798,18086843

prodomImg

Q6I7D4 sp|Q6I7D4|Q6I7D4_STAAU

1055

S=2366 I=44 E=0

Type I restriction-modification system endonuclease homologue

Pubmed 15215121

prodomImg

Q8RJJ4 sp|Q8RJJ4|Q8RJJ4_CAMJE

1054

S=2183 I=43 E=0

HsdR

Pubmed 15699185

prodomImg

Q8RJJ5 sp|Q8RJJ5|Q8RJJ5_CAMJE

1054

S=2181 I=43 E=0

HsdR

Pubmed 15699185

prodomImg

O05052 sp|O05052|T1RH_HAEIN

1054

S=1952 I=41 E=0

Putative type I restriction enzyme HindVIIP R protein EC=3.1.21.3 ; ATP-binding DNA-binding Hydrolase Nucleotide-binding system

prodomImg

Q60295 sp|Q60295|T1RH_METJA

748

S=1119 I=36 E=1.91157e-126

Putative type-1 restriction enzyme MjaXP R protein EC=3.1.21.3 ; ATP-binding DNA-binding Hydrolase Nucleotide-binding Plasmid system

prodomImg

Q60295 sp|Q60295|T1RH_METJA

813

1033

S=330 I=32 E=8.04983e-31

Putative type-1 restriction enzyme MjaXP R protein EC=3.1.21.3 ; ATP-binding DNA-binding Hydrolase Nucleotide-binding Plasmid system

prodomImg

Q57588 sp|Q57588|Y124_METJA

411

714

S=310 I=31 E=1.8722e-28

Uncharacterized protein MJ0124

prodomImg

Q58611 sp|Q58611|Y1214_METJA

109

714

S=308 I=24 E=3.8604e-28

Uncharacterized protein MJ1214

prodomImg

IPR021810 [PF11867]

716

1058

Protein of unknown function DUF3387

IPR007409 [PF04313]

211

Restriction endonuclease, type I, EcoRI, R subunit/Type III, Res subunit, N-terminal

IPR006935 [PF04851]

285

464

Restriction endonuclease, type I, R subunit/Type III, Res subunit

IPR014001 [SM00487]

263

497

DEAD-like helicase, N-terminal

IPR004473 [TIGR00348]

719

Restriction endonuclease, type I, EcoRI, R subunit

IPR014021 [PS51192]

304

481

Helicase, superfamily 1/2, ATP-binding domain

[seg]

628

644

[seg]

779

790

[seg]

797

811

[seg]

948

960

PDA1O2N2

729

796

S=257 I=69 E=1.82331e-23

PD003073

645

691

S=213 I=79 E=3.84313e-18

PD023057

108

S=192 I=51 E=1.38222e-15

PD003184

305

365

S=188 I=57 E=4.52419e-15

PD537486

871

928

S=187 I=64 E=5.87674e-15

PD779586

574

616

S=186 I=74 E=7.11933e-15

PDA82113

362

404

S=174 I=79 E=2.47484e-13

PDA1G587

812

870

S=162 I=58 E=6.07008e-12

PDA0T8Y4

232

286

S=156 I=61 E=3.09935e-11

PD392155

453

505

S=150 I=55 E=1.77244e-10

[SSF52540]

311

480

Suggestions

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Move your mouse over each field to get more informations
ID
DE
EC
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Access unfiltered results

	Set of Uniprot with relevant PubMed cross-references ncbi-blastp	50 hits
	Swiss-Prot ncbi-blastp	18 hits
	Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp	0 hits
	HAMAP scan	0 hits
	IprScan	11 hits

Miscellaneous analyses

ERROR Tag PERLLIB Portal/Tools.pl GetLocalBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WB6ksgGG/XFF4834R_chr33750.xml_fasta", "https://iant.toulouse.inra.fr/bacteria/annotation/web/img/XFF4834R.png"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

ERROR Tag PERLLIB Portal/Tools.pl GetNcbiBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WB6ksgGG/XFF4834R_chr33750.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

ERROR Tag PERLLIB Portal/Tools.pl GetUniprotBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WB6ksgGG/XFF4834R_chr33750.xml_fasta"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

ERROR Tag PERLLIB Portal/Tools.pl GetKeggBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WB6ksgGG/XFF4834R_chr33750.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

XFF4834R_chr_4951849_4952112_f1_XFF4834R-XFF4834R_chr42740 XFF4834R_chr42740

ID	XFF4834R_chr_4951849_4952112_f1_XFF4834R-XFF4834R_chr42740
AC	XFF4834R_chr42740
LT	XFF4834R_chr42740
OR	XFF4834R_chr from 4951849 to 4952112 on strand +
DE	putative Type-2 restriction endonuclease BsuBI/PstI
IP	Restriction endonuclease, type II, BsuBI/PstI, C-terminal
CL	2.1.2 DNA restriction/modification GO:0006304 GO:0009307
EC	3.1.21.4
GO	InterPro Biological Process: DNA restriction-modification system (GO:0009307) Molecular Function: magnesium ion binding (GO:0000287) Molecular Function: DNA binding (GO:0003677) Molecular Function: Type II site-specific deoxyribonuclease activity (GO:0009036) Curated
PM
AN
CC	COG: [S] Function unknown;
CC	MODEL: XFF4834R
CC	STATUS: curated by jacques (20100920)
MW	9966.2 Da
SQ	87 aa
	........10........20........30........40........50 \| \| \| \| \| MFIWNWLLLGESVTSHGRGDSKRHAELARAGPSWADTLAKSPWETEVWVA DAPSHLIHFNDVRFLVPYPERTSGARRLHSFRLIVKS

Domain decomposition

Q5I2Q8 sp|Q5I2Q8|Q5I2Q8_9NEIS

S=189 I=59 E=3.06175e-15

Type II restriction enzyme BsuBI ; Plasmid

Pubmed 16165318

prodomImg

P33562 sp|P33562|T2BB_BACSU

S=184 I=59 E=1.31316e-14

Type-2 restriction enzyme BsuBI EC=3.1.21.4 ; Endonuclease Hydrolase Magnesium system

Pubmed 1480472

prodomImg

Q8VLS0 sp|Q8VLS0|Q8VLS0_YEREN

S=158 I=49 E=2.07928e-11

Methyltransferase-endonuclease

Pubmed 12620628

prodomImg

P00640 sp|P00640|T2PS_PROST

S=116 I=40 E=2.50843e-06

Type-2 restriction enzyme PstI EC=3.1.21.4 ; Endonuclease Hydrolase Magnesium system

Pubmed 6330092

prodomImg

P33562 sp|P33562|T2BB_BACSU

S=184 I=59 E=8.65583e-15

Type-2 restriction enzyme BsuBI EC=3.1.21.4 ; Endonuclease Hydrolase Magnesium system

prodomImg

P00640 sp|P00640|T2PS_PROST

S=116 I=40 E=1.65347e-06

Type-2 restriction enzyme PstI EC=3.1.21.4 ; Endonuclease Hydrolase Magnesium system

prodomImg

IPR009528 [PF06616]

Restriction endonuclease, type II, BsuBI/PstI, C-terminal

PD024524

S=132 I=45 E=1.61175e-08

Suggestions

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ID
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Access unfiltered results

	Set of Uniprot with relevant PubMed cross-references ncbi-blastp	4 hits
	Swiss-Prot ncbi-blastp	2 hits
	Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp	0 hits
	HAMAP scan	0 hits
	IprScan	1 hits

Miscellaneous analyses

ERROR Tag PERLLIB Portal/Tools.pl GetLocalBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WB6ksgGG/XFF4834R_chr42740.xml_fasta", "https://iant.toulouse.inra.fr/bacteria/annotation/web/img/XFF4834R.png"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

ERROR Tag PERLLIB Portal/Tools.pl GetNcbiBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WB6ksgGG/XFF4834R_chr42740.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

ERROR Tag PERLLIB Portal/Tools.pl GetUniprotBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WB6ksgGG/XFF4834R_chr42740.xml_fasta"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

ERROR Tag PERLLIB Portal/Tools.pl GetKeggBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WB6ksgGG/XFF4834R_chr42740.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

XFF4834R_plc00240

ID
AC	XFF4834R_plc00240
LT	XFF4834R_plc00240
OR	XFF4834R_plc from 18106 to 19107 on strand +
DE	Probable Type II restriction endonuclease XcyI
IP	Restriction endonuclease, type II, XcyI
CL	2.1.2 DNA restriction/modification GO:0006304 GO:0009307
EC
GO	InterPro Biological Process: DNA restriction-modification system (GO:0009307) Molecular Function: magnesium ion binding (GO:0000287) Molecular Function: DNA binding (GO:0003677) Molecular Function: Type II site-specific deoxyribonuclease activity (GO:0009036) Curated
PM
AN
CC	COG: [S] Function unknown;
CC	MODEL: XFF4834R
CC	STATUS: curated by szurek (20101122)
MW	36765.7 Da
SQ	333 aa
	........10........20........30........40........50 \| \| \| \| \| MTTPNKINFPPPKLQIDFAFALKRFRAVYLQSALLETVRDMDIAELDRQL SKYVPPADLATLAQYGLRAELLFAVPAVLEANPHLLGYYRLLMGYSQKEF YGRDKGFGVGCFKSMEEKGKAGKAAVADLHDLCVAFCAAASALLAGVGPL RVSRELLDDLTLLTVGPQLRGGANNQRGADGIVLVFEIIREIVAHAAAEV RESAIEVNSATGRPVLIEFAPDPDIIIREEMEHQHYRNVVAIEVKSGTDV SNIHNRIGEAEKSHQKARQRGFTECWTVVNVGRLDMVKARSESPSTDRFY SLTALSLRAGDEYDDFRRRVLSLTAIPARPANP

Domain decomposition

Q32XB3 sp|Q32XB3|Q32XB3_9XANT

333

S=1546 I=92 E=1.15447e-178

Probable restriction endonuclease R.XmaI ; Plasmid

Pubmed 16697042

prodomImg

P30773 sp|P30773|T2X1_XANCC

333

S=1532 I=91 E=6.09879e-177

Type-2 restriction enzyme XcyI EC=3.1.21.4 ; Endonuclease Hydrolase Magnesium system

Pubmed 1475187

prodomImg

Q9XAW7 sp|Q9XAW7|Q9XAW7_PSEAC

333

S=1482 I=88 E=6.79661e-171

Pac25I endonuclease ; Plasmid

Pubmed 9742696,9465390

prodomImg

Q60132 sp|Q60132|T2C9_CITFR

330

S=1225 I=75 E=9.80487e-140

Type-2 restriction enzyme Cfr9I EC=3.1.21.4 ; Endonuclease Hydrolase Magnesium system

Pubmed 8163180

prodomImg

P30773 sp|P30773|T2X1_XANCC

333

S=1532 I=91 E=4.20085e-177

Type-2 restriction enzyme XcyI EC=3.1.21.4 ; Endonuclease Hydrolase Magnesium system

prodomImg

Q60132 sp|Q60132|T2C9_CITFR

330

S=1225 I=75 E=6.7536e-140

Type-2 restriction enzyme Cfr9I EC=3.1.21.4 ; Endonuclease Hydrolase Magnesium system

prodomImg

IPR019071 [PF09571]

327

Restriction endonuclease, type II, XcyI

[seg]

116

125

[seg]

133

148

PDA1S0B1

149

327

S=664 I=76 E=5.80968e-73

PD017942

114

S=498 I=90 E=9.0695e-53

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	Set of Uniprot with relevant PubMed cross-references ncbi-blastp	4 hits
	Swiss-Prot ncbi-blastp	2 hits
	Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp	0 hits
	HAMAP scan	0 hits
	IprScan	3 hits

Miscellaneous analyses

ERROR Tag PERLLIB Portal/Tools.pl GetLocalBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WB6ksgGG/XFF4834R_plc00240.xml_fasta", "https://iant.toulouse.inra.fr/bacteria/annotation/web/img/XFF4834R.png"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

ERROR Tag PERLLIB Portal/Tools.pl GetNcbiBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WB6ksgGG/XFF4834R_plc00240.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

ERROR Tag PERLLIB Portal/Tools.pl GetUniprotBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WB6ksgGG/XFF4834R_plc00240.xml_fasta"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

ERROR Tag PERLLIB Portal/Tools.pl GetKeggBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WB6ksgGG/XFF4834R_plc00240.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

XFF4834R_plc_0036603_0037172_f3_XFF4834R-XFF4834R_plc00430 XFF4834R_plc00430

ID	XFF4834R_plc_0036603_0037172_f3_XFF4834R-XFF4834R_plc00430
AC	XFF4834R_plc00430
LT	XFF4834R_plc00430
OR	XFF4834R_plc from 35603 to 36172 on strand +
DE	putative restriction endonuclease protein
IP	Restriction endonuclease, type IV-like, Mrr
CL	2.1.2 DNA restriction/modification GO:0006304 GO:0009307
EC
GO	InterPro Biological Process: DNA restriction-modification system (GO:0009307) Molecular Function: endonuclease activity (GO:0004519) Molecular Function: DNA binding (GO:0003677) Curated
PM
AN
CC	COG: [V] Defense mechanisms;
CC	MODEL: XFF4834R
CC	STATUS: curated by poussier (20100713)
MW	21509.6 Da
SQ	189 aa
	........10........20........30........40........50 \| \| \| \| \| MSWSQLFALFVGLAILAALAVVSALRPKARERRHRRRQDQARRVLAKINT IPLMPQRLAYLRKIDPLTFEELLLETFERRGYRVERNTHYTGDGGVDGAV YLNGTRYLLQAKRYRKHINRAHILAFAELLEARGSRGIFIHTGRTGAGAR ELATANPHLTIISGQRLLDFLNSGRLDRENANAHRTMGN

Domain decomposition

lcl|XALq_3201

188

S=608 I=81 E=6.41949e-67

putative restriction endonuclease protein

B6UYU8 sp|B6UYU8|B6UYU8_KLEPN

174

S=332 I=48 E=6.29874e-32

Restriction endonuclease family ; Plasmid

Pubmed 19258268

prodomImg

Q79SF8 sp|Q79SF8|Q79SF8_9ZZZZ

174

S=332 I=48 E=6.75377e-32

Putative uncharacterized protein

Pubmed 8029323,7891554

prodomImg

O06957 sp|O06957|O06957_9ZZZZ

174

S=332 I=48 E=6.75377e-32

Putative uncharacterized protein

Pubmed 8029323,7891554

prodomImg

Q17U30 sp|Q17U30|Q17U30_ECOLX

174

S=332 I=48 E=6.75377e-32

Putative uncharacterized protein ; Plasmid

Pubmed 15963296,16027145

prodomImg

B6UZ58 sp|B6UZ58|B6UZ58_KLEPN

174

S=332 I=48 E=7.30507e-32

Restriction endonuclease family ; Plasmid

Pubmed 19258268

prodomImg

IPR007560 [PF04471]

167

Restriction endonuclease, type IV-like, Mrr

[seg]

[SignalP-NN(euk)]

[tmhmm]

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ID
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EC
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	Validation code (copy this one 9n5x4pXR)

Access unfiltered results

	Set of Uniprot with relevant PubMed cross-references ncbi-blastp	7 hits
	Swiss-Prot ncbi-blastp	0 hits
	Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp	0 hits
	HAMAP scan	0 hits
	IprScan	6 hits

Miscellaneous analyses

ERROR Tag PERLLIB Portal/Tools.pl GetLocalBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WB6ksgGG/XFF4834R_plc00430.xml_fasta", "https://iant.toulouse.inra.fr/bacteria/annotation/web/img/XFF4834R.png"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

ERROR Tag PERLLIB Portal/Tools.pl GetNcbiBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WB6ksgGG/XFF4834R_plc00430.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

ERROR Tag PERLLIB Portal/Tools.pl GetUniprotBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WB6ksgGG/XFF4834R_plc00430.xml_fasta"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

ERROR Tag PERLLIB Portal/Tools.pl GetKeggBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WB6ksgGG/XFF4834R_plc00430.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

XFF4834R_chr13520

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XFF4834R_chr31210385_3299353_f2_XFF4834R-XFF4834R_chr28660 XFF4834R_chr28660

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XFF4834R_chr36570333_3896512_r3_XFF4834R-XFF4834R_chr33750 XFF4834R_chr33750

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XFF4834R_chr_4951849_4952112_f1_XFF4834R-XFF4834R_chr42740 XFF4834R_chr42740

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XFF4834R_plc00240

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XFF4834R_plc_0036603_0037172_f3_XFF4834R-XFF4834R_plc00430 XFF4834R_plc00430

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