Xanthomonas fuscans subsp. fuscans

6 hits

XFF4834R_chr13520 XFF4834R_chr13520 putative DNA methylase N-terminal fragment, pseudogene
XFF4834R_chr28660 XFF4834R_chr31210385_3299353_f2_XFF4834R-XFF4834R_chr28660 XFF4834R_chr28660 putative restriction endonuclease, type IV-like
XFF4834R_chr33750 XFF4834R_chr36570333_3896512_r3_XFF4834R-XFF4834R_chr33750 XFF4834R_chr33750 probable type I restriction-modification system endonuclease
XFF4834R_chr42740 XFF4834R_chr_4951849_4952112_f1_XFF4834R-XFF4834R_chr42740 XFF4834R_chr42740 putative Type-2 restriction endonuclease BsuBI/PstI
XFF4834R_plc00240 XFF4834R_plc00240 Probable Type II restriction endonuclease XcyI
XFF4834R_plc00430 XFF4834R_plc_0036603_0037172_f3_XFF4834R-XFF4834R_plc00430 XFF4834R_plc00430 putative restriction endonuclease protein

XFF4834R_chr13520

DrawMap

XML file

FASTA file

Extract
Sequence

ID
AC	XFF4834R_chr13520
LO	XFF4834R_chr13520
DE	putative DNA methylase N-terminal fragment, pseudogene
CL	2.1.2 DNA restriction/modification GO:0006304 GO:0009307
GO	InterPro Curated
PM
AN	The pseudogene XFF4834R_chr13520 replaces ORF XFF4834R_chr_1460 which corresponded to the N-terminal fragment (8%) of a putative DNA methylase (XCV2165) predicted in Xav.
CC	MODEL:
CC	STATUS: curated by darrasse (20120413)
SQ	306 nt
	........10........20........30........40........50 \| \| \| \| \| ATGAACGCAGTTGAGATTGAAGAGGCACTATCAGCTCTGGCTGAGGCCCC GTTTGAGCCGGCAGAATTCCCATATCAATTCCTGACAGCGTTTGGGAACA AAGACACCACTATCAAGCGTCTGCGAAAGGGGGATAGCAACGCGTCCGAC GTTCCGGGCGCTGTCTTGCAACGAAGCAACATCCATCTGGCCACCTGTGC CCCAGGAAAGGTCCACGAGACCTTGCAAGTGTTGCGCGAGAGTCCTCGGA ATCTGCCAGCCAAAGCCAAGTTCATCCTGGCGGAGCGTGTGCAGAATTTT GTGTAA

Domain decomposition

[seg]

Suggestions

Suggest an annotation
Move your mouse over each field to get more informations
ID
DE
EC
GO
PM
CC
CL
	Your email
	Validation code (copy this one xPh5oz8m)

Access unfiltered results

	Set of Uniprot with relevant PubMed cross-references ncbi-blastx	0 hits
	Swiss-Prot ncbi-blastx	0 hits
	Xanthomonas fuscans subsp. fuscans proteome ncbi-blastx	0 hits
	IprScan	2 hits

Miscellaneous analyses

ERROR Tag PERLLIB Portal/Tools.pl GetLocalBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBvXJZ85/XFF4834R_chr13520.xml_fasta", "https://iant.toulouse.inra.fr/bacteria/annotation/web/img/XFF4834R.png"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

ERROR Tag PERLLIB Portal/Tools.pl GetNcbiBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBvXJZ85/XFF4834R_chr13520.xml_fasta", "blastx"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

ERROR Tag PERLLIB Portal/Tools.pl GetUniprotBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBvXJZ85/XFF4834R_chr13520.xml_fasta"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

ERROR Tag PERLLIB Portal/Tools.pl GetKeggBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBvXJZ85/XFF4834R_chr13520.xml_fasta", "blastx"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

XFF4834R_chr31210385_3299353_f2_XFF4834R-XFF4834R_chr28660 XFF4834R_chr28660

ID	XFF4834R_chr31210385_3299353_f2_XFF4834R-XFF4834R_chr28660
AC	XFF4834R_chr28660
LT	XFF4834R_chr28660
OR	XFF4834R_chr from 3298361 to 3299353 on strand +
DE	putative restriction endonuclease, type IV-like
IP	Restriction endonuclease, type IV-like, Mrr
CL	2.1.2 DNA restriction/modification GO:0006304 GO:0009307
EC
GO	InterPro Biological Process: DNA restriction-modification system (GO:0009307) Molecular Function: DNA binding (GO:0003677) Molecular Function: endonuclease activity (GO:0004519) Curated
PM
AN	modification du start, en accord avec usage du code, force du start et alignements autres xanthos
CC	COG: [S] Function unknown;
CC	MODEL: XFF4834R
CC	STATUS: curated by darrasse (20120404)
MW	35304.6 Da
SQ	330 aa
	........10........20........30........40........50 \| \| \| \| \| MPSWILAPLAALLLWLAVSAYLWLVRRRANEVHEGVRALAIMHWRDFSAV VLRVLQDQRGWQPTQLPQDGLPTADFMMQTEHGTRLVACKHGRGYRIGVA AVNELGAMARLAGANGGVMVTEGRMEREGIAAAEKQSIEVLDGVRLWPLL KPYLPGDVEAGVVGAARRRAIRHSIIAGAALATLAVMAVLTLRPPAPTPA TPRTAVSSPVPAPARVTAAATPSAGTAQPGPSPTAVPAAAPAPGAEPDAA TIQGYQREVSKALAQTPGLVRGIWLTQATLVVDRTVEDSAAWPLICRELE RHPYLRTVRVQLNPRPGTAEPVRWRQCSTI

YP_363414.1 XCV1683

159

S=707 I=100 E=1.57397e-78

hypothetical protein

YP_363414.1 XCV1683

251

330

S=412 I=98 E=7.02979e-43

hypothetical protein

NP_636954.1 XCC1583

159

S=677 I=95 E=6.61733e-75

hypothetical protein

NP_636954.1 XCC1583

251

330

S=378 I=88 E=1.15165e-38

hypothetical protein

NP_641973.1 XAC1641-XAC1641

159

S=673 I=92 E=2.05555e-74

hypothetical protein

NP_641973.1 XAC1641-XAC1641

251

330

S=410 I=98 E=1.17583e-42

hypothetical protein

XALc_1712 XALc_1712

159

S=384 I=54 E=1.9448e-39

putative_membrane_protein_pd-(d/e)xk_nuclease_superfamily

XALc_1712 XALc_1712

253

330

S=275 I=63 E=3.39065e-26

putative_membrane_protein_pd-(d/e)xk_nuclease_superfamily

IPR007560 [PF04471]

146

Restriction endonuclease, type IV-like, Mrr

[seg]

160

224

[seg]

229

250

[SignalP-NN(euk)]

[tmhmm]

170

192

PD607507

159

S=669 I=90 E=1.70863e-73

PD607507

251

330

S=408 I=95 E=6.26546e-42

Suggestions

Suggest an annotation
Move your mouse over each field to get more informations
ID
DE
EC
GO
PM
CC
CL
	Your email
	Validation code (copy this one Qx7rD7Fj)

Access unfiltered results

	Set of Uniprot with relevant PubMed cross-references ncbi-blastp	0 hits
	Swiss-Prot ncbi-blastp	0 hits
	Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp	2 hits
	HAMAP scan	0 hits
	IprScan	7 hits

Miscellaneous analyses

ERROR Tag PERLLIB Portal/Tools.pl GetLocalBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBvXJZ85/XFF4834R_chr28660.xml_fasta", "https://iant.toulouse.inra.fr/bacteria/annotation/web/img/XFF4834R.png"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

ERROR Tag PERLLIB Portal/Tools.pl GetNcbiBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBvXJZ85/XFF4834R_chr28660.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

ERROR Tag PERLLIB Portal/Tools.pl GetUniprotBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBvXJZ85/XFF4834R_chr28660.xml_fasta"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

ERROR Tag PERLLIB Portal/Tools.pl GetKeggBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBvXJZ85/XFF4834R_chr28660.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

XFF4834R_chr36570333_3896512_r3_XFF4834R-XFF4834R_chr33750 XFF4834R_chr33750

ID	XFF4834R_chr36570333_3896512_r3_XFF4834R-XFF4834R_chr33750
AC	XFF4834R_chr33750
LT	XFF4834R_chr33750
OR	XFF4834R_chr from 3893333 to 3896512 on strand -
DE	probable type I restriction-modification system endonuclease
IP	Restriction endonuclease, type I, EcoRI, R subunit; Restriction endonuclease, type I, R subunit/Type III, Res subunit; Helicase, superfamily 1/2, ATP-binding domain;
CL	2.1.2 DNA restriction/modification GO:0006304 GO:0009307
EC
GO	InterPro Biological Process: DNA modification (GO:0006304) Biological Process: DNA restriction-modification system (GO:0009307) Molecular Function: DNA binding (GO:0003677) Molecular Function: Type I site-specific deoxyribonuclease activity (GO:0009035) Molecular Function: ATP binding (GO:0005524) Molecular Function: endonuclease activity (GO:0004519) Molecular Function: hydrolase activity (GO:0016787) Curated
PM
AN
CC	COG: [V] Defense mechanisms;
CC	MODEL: XFF4834R
CC	STATUS: curated by poussier (20100710)
MW	116789.5 Da
SQ	1059 aa
	........10........20........30........40........50 \| \| \| \| \| MAFLSEAAVEQALLEQLRRLGYSVVSDNTAGPDGSAPERESHDVVVLQQR LADAVTRLNPQLPPEAREDATRKLTQNELPNLLEENRRIHALLTEGVDVE YYADDGVLTAGKVWLLDFDRPENNDWLAVQQFVVISGQTRRRPDVVLFVN GLPLAVIELKSPGSAGANLVGAFNQLQTYKQQIPALFHTNAVLVTSDGIA ARVGSLSADLERFMPWRTTDGRQVLPKGQPELPTLIEGVFAPQRFLELLR WFTAFGETGGGLVKIIAGYHQFHAVNHAVESTIRASRSAVAEDPAKYGLA SVKAQPAGDRRAGVIWHTQGSGKSLLMAFYAGRLVQHPAMRNPTLVVLTD RNDLDDQLFGTFSMCKALLRQTPVQADSREDLAHLLDRASGGVIFTTLQK FGELEAPLTTRRNVVVIADEAHRSQYGLKAKLDAETGVVSYGFAKYMRDA LPNASFIGFTGTPIEATDVNTPALFGHYIDVYDISRAVEDGATVPIYYES RLARIELDEDEKPHLDAEVEALFEGEGTDEKEKLKGRAAAVERLVGSQKR LALVAQDLVTHFEERVAALDGKAMAVCMSREICVDLYTEIIKLRPHWHSD DDTLGAVKIVMTGAASDPPHWQQHIGNKARRDALARRAKDPADPLKLVIV RDMWLTGFDAPSMHTMYVDKPMKGHGLMQAIARVNRVFRDKPAGLIVDYI GIAQNLKSALAQYSPQDKQNTGIDEAQAIAVLREKYEVVRDMYHGFDYLT ALNGTPQQRLAMMAGAIEWILDQQQQWMAAASSDDGKKAAQRRYQDAVLA LSTAYALASASDEALAVREEVGFFQAIREALVKSATGSGISSQERDFAIR QIVSRAVVSTEIVDILKAAGIQSPDISILSDEFLAEVQRMEKKNLALEAL RKLINDGIRSRSKRNIVETKAFSERLEDAIARYHANAITTAEVLQELIRI AKDIRAARARGEEQGLSEDEIAFYDALAENESAVQVMGDDALKVIAHELL VSLKGSASVDWARRDSARARMRVLVKRILRKYGYPPDLQDAAVRTVLQQA EALSAAWSA

NP_638253.1 lcl|XCC2905

722

S=539 I=29 E=1.0879e-57

HsdR protein

NP_641505.1 lcl|XAC1169-XAC1169

1020

1059

S=196 I=98 E=4.35432e-16

hypothetical protein

YP_362240.1 lcl|hsdR1-XCV0509

645

714

S=182 I=51 E=1.96618e-14

type I site-specific deoxyribonuclease (restriction subunit)

YP_362240.1 lcl|hsdR1-XCV0509

313

490

S=152 I=33 E=8.63457e-11

type I site-specific deoxyribonuclease (restriction subunit)

NP_635856.1 lcl|hsdR-XCC0462

645

714

S=173 I=49 E=2.88314e-13

type I restriction-modification system endonuclease

NP_635856.1 lcl|hsdR-XCC0462

313

490

S=149 I=33 E=2.11958e-10

type I restriction-modification system endonuclease

NP_643207.1 lcl|hsdR-XAC2898

144

713

S=137 I=25 E=5.77213e-09

type I restriction-modification system endonuclease

YP_362925.1 lcl|hsdR2-XCV1194

646

713

S=115 I=31 E=2.5816e-06

type I site-specific deoxyribonuclease (restriction subunit)

YP_362925.1 lcl|hsdR2-XCV1194

304

427

S=102 I=35 E=9.21205e-05

type I site-specific deoxyribonuclease (restriction subunit)

Q6EVS7 sp|Q6EVS7|Q6EVS7_YERPS

1059

S=2389 I=47 E=0

Hsdr-like Type I restriction enzyme

Pubmed 12379698,15271940

prodomImg

C1PH85 sp|C1PH85|C1PH85_STAAU

1054

S=2375 I=44 E=0

Type I restriction-modification system endonuclease Type I restriction-modification system endonuclease homologue

Pubmed 18926798,18086843

prodomImg

Q6I7D4 sp|Q6I7D4|Q6I7D4_STAAU

1055

S=2366 I=44 E=0

Type I restriction-modification system endonuclease homologue

Pubmed 15215121

prodomImg

Q8RJJ4 sp|Q8RJJ4|Q8RJJ4_CAMJE

1054

S=2183 I=43 E=0

HsdR

Pubmed 15699185

prodomImg

Q8RJJ5 sp|Q8RJJ5|Q8RJJ5_CAMJE

1054

S=2181 I=43 E=0

HsdR

Pubmed 15699185

prodomImg

O05052 sp|O05052|T1RH_HAEIN

1054

S=1952 I=41 E=0

Putative type I restriction enzyme HindVIIP R protein EC=3.1.21.3 ; ATP-binding DNA-binding Hydrolase Nucleotide-binding system

prodomImg

Q60295 sp|Q60295|T1RH_METJA

748

S=1119 I=36 E=1.91157e-126

Putative type-1 restriction enzyme MjaXP R protein EC=3.1.21.3 ; ATP-binding DNA-binding Hydrolase Nucleotide-binding Plasmid system

prodomImg

Q60295 sp|Q60295|T1RH_METJA

813

1033

S=330 I=32 E=8.04983e-31

Putative type-1 restriction enzyme MjaXP R protein EC=3.1.21.3 ; ATP-binding DNA-binding Hydrolase Nucleotide-binding Plasmid system

prodomImg

Q57588 sp|Q57588|Y124_METJA

411

714

S=310 I=31 E=1.8722e-28

Uncharacterized protein MJ0124

prodomImg

Q58611 sp|Q58611|Y1214_METJA

109

714

S=308 I=24 E=3.8604e-28

Uncharacterized protein MJ1214

prodomImg

IPR021810 [PF11867]

716

1058

Protein of unknown function DUF3387

IPR007409 [PF04313]

211

Restriction endonuclease, type I, EcoRI, R subunit/Type III, Res subunit, N-terminal

IPR006935 [PF04851]

285

464

Restriction endonuclease, type I, R subunit/Type III, Res subunit

IPR014001 [SM00487]

263

497

DEAD-like helicase, N-terminal

IPR004473 [TIGR00348]

719

Restriction endonuclease, type I, EcoRI, R subunit

IPR014021 [PS51192]

304

481

Helicase, superfamily 1/2, ATP-binding domain

[seg]

628

644

[seg]

779

790

[seg]

797

811

[seg]

948

960

PDA1O2N2

729

796

S=257 I=69 E=1.82331e-23

PD003073

645

691

S=213 I=79 E=3.84313e-18

PD023057

108

S=192 I=51 E=1.38222e-15

PD003184

305

365

S=188 I=57 E=4.52419e-15

PD537486

871

928

S=187 I=64 E=5.87674e-15

PD779586

574

616

S=186 I=74 E=7.11933e-15

PDA82113

362

404

S=174 I=79 E=2.47484e-13

PDA1G587

812

870

S=162 I=58 E=6.07008e-12

PDA0T8Y4

232

286

S=156 I=61 E=3.09935e-11

PD392155

453

505

S=150 I=55 E=1.77244e-10

[SSF52540]

311

480

Suggestions

Suggest an annotation
Move your mouse over each field to get more informations
ID
DE
EC
GO
PM
CC
CL
	Your email
	Validation code (copy this one KCpxS0Ni)

Access unfiltered results

	Set of Uniprot with relevant PubMed cross-references ncbi-blastp	50 hits
	Swiss-Prot ncbi-blastp	18 hits
	Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp	0 hits
	HAMAP scan	0 hits
	IprScan	11 hits

Miscellaneous analyses

ERROR Tag PERLLIB Portal/Tools.pl GetLocalBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBvXJZ85/XFF4834R_chr33750.xml_fasta", "https://iant.toulouse.inra.fr/bacteria/annotation/web/img/XFF4834R.png"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

ERROR Tag PERLLIB Portal/Tools.pl GetNcbiBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBvXJZ85/XFF4834R_chr33750.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

ERROR Tag PERLLIB Portal/Tools.pl GetUniprotBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBvXJZ85/XFF4834R_chr33750.xml_fasta"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

ERROR Tag PERLLIB Portal/Tools.pl GetKeggBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBvXJZ85/XFF4834R_chr33750.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

XFF4834R_chr_4951849_4952112_f1_XFF4834R-XFF4834R_chr42740 XFF4834R_chr42740

ID	XFF4834R_chr_4951849_4952112_f1_XFF4834R-XFF4834R_chr42740
AC	XFF4834R_chr42740
LT	XFF4834R_chr42740
OR	XFF4834R_chr from 4951849 to 4952112 on strand +
DE	putative Type-2 restriction endonuclease BsuBI/PstI
IP	Restriction endonuclease, type II, BsuBI/PstI, C-terminal
CL	2.1.2 DNA restriction/modification GO:0006304 GO:0009307
EC	3.1.21.4
GO	InterPro Biological Process: DNA restriction-modification system (GO:0009307) Molecular Function: DNA binding (GO:0003677) Molecular Function: magnesium ion binding (GO:0000287) Molecular Function: Type II site-specific deoxyribonuclease activity (GO:0009036) Curated
PM
AN
CC	COG: [S] Function unknown;
CC	MODEL: XFF4834R
CC	STATUS: curated by jacques (20100920)
MW	9966.2 Da
SQ	87 aa
	........10........20........30........40........50 \| \| \| \| \| MFIWNWLLLGESVTSHGRGDSKRHAELARAGPSWADTLAKSPWETEVWVA DAPSHLIHFNDVRFLVPYPERTSGARRLHSFRLIVKS

Domain decomposition

Q5I2Q8 sp|Q5I2Q8|Q5I2Q8_9NEIS

S=189 I=59 E=3.06175e-15

Type II restriction enzyme BsuBI ; Plasmid

Pubmed 16165318

prodomImg

P33562 sp|P33562|T2BB_BACSU

S=184 I=59 E=1.31316e-14

Type-2 restriction enzyme BsuBI EC=3.1.21.4 ; Endonuclease Hydrolase Magnesium system

Pubmed 1480472

prodomImg

Q8VLS0 sp|Q8VLS0|Q8VLS0_YEREN

S=158 I=49 E=2.07928e-11

Methyltransferase-endonuclease

Pubmed 12620628

prodomImg

P00640 sp|P00640|T2PS_PROST

S=116 I=40 E=2.50843e-06

Type-2 restriction enzyme PstI EC=3.1.21.4 ; Endonuclease Hydrolase Magnesium system

Pubmed 6330092

prodomImg

P33562 sp|P33562|T2BB_BACSU

S=184 I=59 E=8.65583e-15

Type-2 restriction enzyme BsuBI EC=3.1.21.4 ; Endonuclease Hydrolase Magnesium system

prodomImg

P00640 sp|P00640|T2PS_PROST

S=116 I=40 E=1.65347e-06

Type-2 restriction enzyme PstI EC=3.1.21.4 ; Endonuclease Hydrolase Magnesium system

prodomImg

IPR009528 [PF06616]

Restriction endonuclease, type II, BsuBI/PstI, C-terminal

PD024524

S=132 I=45 E=1.61175e-08

Suggestions

Suggest an annotation
Move your mouse over each field to get more informations
ID
DE
EC
GO
PM
CC
CL
	Your email
	Validation code (copy this one mupFxSYA)

Access unfiltered results

	Set of Uniprot with relevant PubMed cross-references ncbi-blastp	4 hits
	Swiss-Prot ncbi-blastp	2 hits
	Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp	0 hits
	HAMAP scan	0 hits
	IprScan	1 hits

Miscellaneous analyses

ERROR Tag PERLLIB Portal/Tools.pl GetLocalBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBvXJZ85/XFF4834R_chr42740.xml_fasta", "https://iant.toulouse.inra.fr/bacteria/annotation/web/img/XFF4834R.png"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

ERROR Tag PERLLIB Portal/Tools.pl GetNcbiBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBvXJZ85/XFF4834R_chr42740.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

ERROR Tag PERLLIB Portal/Tools.pl GetUniprotBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBvXJZ85/XFF4834R_chr42740.xml_fasta"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

ERROR Tag PERLLIB Portal/Tools.pl GetKeggBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBvXJZ85/XFF4834R_chr42740.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

XFF4834R_plc00240

ID
AC	XFF4834R_plc00240
LT	XFF4834R_plc00240
OR	XFF4834R_plc from 18106 to 19107 on strand +
DE	Probable Type II restriction endonuclease XcyI
IP	Restriction endonuclease, type II, XcyI
CL	2.1.2 DNA restriction/modification GO:0006304 GO:0009307
EC
GO	InterPro Biological Process: DNA restriction-modification system (GO:0009307) Molecular Function: DNA binding (GO:0003677) Molecular Function: magnesium ion binding (GO:0000287) Molecular Function: Type II site-specific deoxyribonuclease activity (GO:0009036) Curated
PM
AN
CC	COG: [S] Function unknown;
CC	MODEL: XFF4834R
CC	STATUS: curated by szurek (20101122)
MW	36765.7 Da
SQ	333 aa
	........10........20........30........40........50 \| \| \| \| \| MTTPNKINFPPPKLQIDFAFALKRFRAVYLQSALLETVRDMDIAELDRQL SKYVPPADLATLAQYGLRAELLFAVPAVLEANPHLLGYYRLLMGYSQKEF YGRDKGFGVGCFKSMEEKGKAGKAAVADLHDLCVAFCAAASALLAGVGPL RVSRELLDDLTLLTVGPQLRGGANNQRGADGIVLVFEIIREIVAHAAAEV RESAIEVNSATGRPVLIEFAPDPDIIIREEMEHQHYRNVVAIEVKSGTDV SNIHNRIGEAEKSHQKARQRGFTECWTVVNVGRLDMVKARSESPSTDRFY SLTALSLRAGDEYDDFRRRVLSLTAIPARPANP

Domain decomposition

Q32XB3 sp|Q32XB3|Q32XB3_9XANT

333

S=1546 I=92 E=1.15447e-178

Probable restriction endonuclease R.XmaI ; Plasmid

Pubmed 16697042

prodomImg

P30773 sp|P30773|T2X1_XANCC

333

S=1532 I=91 E=6.09879e-177

Type-2 restriction enzyme XcyI EC=3.1.21.4 ; Endonuclease Hydrolase Magnesium system

Pubmed 1475187

prodomImg

Q9XAW7 sp|Q9XAW7|Q9XAW7_PSEAC

333

S=1482 I=88 E=6.79661e-171

Pac25I endonuclease ; Plasmid

Pubmed 9742696,9465390

prodomImg

Q60132 sp|Q60132|T2C9_CITFR

330

S=1225 I=75 E=9.80487e-140

Type-2 restriction enzyme Cfr9I EC=3.1.21.4 ; Endonuclease Hydrolase Magnesium system

Pubmed 8163180

prodomImg

P30773 sp|P30773|T2X1_XANCC

333

S=1532 I=91 E=4.20085e-177

Type-2 restriction enzyme XcyI EC=3.1.21.4 ; Endonuclease Hydrolase Magnesium system

prodomImg

Q60132 sp|Q60132|T2C9_CITFR

330

S=1225 I=75 E=6.7536e-140

Type-2 restriction enzyme Cfr9I EC=3.1.21.4 ; Endonuclease Hydrolase Magnesium system

prodomImg

IPR019071 [PF09571]

327

Restriction endonuclease, type II, XcyI

[seg]

116

125

[seg]

133

148

PDA1S0B1

149

327

S=664 I=76 E=5.80968e-73

PD017942

114

S=498 I=90 E=9.0695e-53

Suggestions

Suggest an annotation
Move your mouse over each field to get more informations
ID
DE
EC
GO
PM
CC
CL
	Your email
	Validation code (copy this one ybHEbMs6)

Access unfiltered results

	Set of Uniprot with relevant PubMed cross-references ncbi-blastp	4 hits
	Swiss-Prot ncbi-blastp	2 hits
	Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp	0 hits
	HAMAP scan	0 hits
	IprScan	3 hits

Miscellaneous analyses

ERROR Tag PERLLIB Portal/Tools.pl GetLocalBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBvXJZ85/XFF4834R_plc00240.xml_fasta", "https://iant.toulouse.inra.fr/bacteria/annotation/web/img/XFF4834R.png"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

ERROR Tag PERLLIB Portal/Tools.pl GetNcbiBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBvXJZ85/XFF4834R_plc00240.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

ERROR Tag PERLLIB Portal/Tools.pl GetUniprotBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBvXJZ85/XFF4834R_plc00240.xml_fasta"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

ERROR Tag PERLLIB Portal/Tools.pl GetKeggBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBvXJZ85/XFF4834R_plc00240.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

XFF4834R_plc_0036603_0037172_f3_XFF4834R-XFF4834R_plc00430 XFF4834R_plc00430

ID	XFF4834R_plc_0036603_0037172_f3_XFF4834R-XFF4834R_plc00430
AC	XFF4834R_plc00430
LT	XFF4834R_plc00430
OR	XFF4834R_plc from 35603 to 36172 on strand +
DE	putative restriction endonuclease protein
IP	Restriction endonuclease, type IV-like, Mrr
CL	2.1.2 DNA restriction/modification GO:0006304 GO:0009307
EC
GO	InterPro Biological Process: DNA restriction-modification system (GO:0009307) Molecular Function: DNA binding (GO:0003677) Molecular Function: endonuclease activity (GO:0004519) Curated
PM
AN
CC	COG: [V] Defense mechanisms;
CC	MODEL: XFF4834R
CC	STATUS: curated by poussier (20100713)
MW	21509.6 Da
SQ	189 aa
	........10........20........30........40........50 \| \| \| \| \| MSWSQLFALFVGLAILAALAVVSALRPKARERRHRRRQDQARRVLAKINT IPLMPQRLAYLRKIDPLTFEELLLETFERRGYRVERNTHYTGDGGVDGAV YLNGTRYLLQAKRYRKHINRAHILAFAELLEARGSRGIFIHTGRTGAGAR ELATANPHLTIISGQRLLDFLNSGRLDRENANAHRTMGN

Domain decomposition

lcl|XALq_3201

188

S=608 I=81 E=6.41949e-67

putative restriction endonuclease protein

B6UYU8 sp|B6UYU8|B6UYU8_KLEPN

174

S=332 I=48 E=6.29874e-32

Restriction endonuclease family ; Plasmid

Pubmed 19258268

prodomImg

Q79SF8 sp|Q79SF8|Q79SF8_9ZZZZ

174

S=332 I=48 E=6.75377e-32

Putative uncharacterized protein

Pubmed 8029323,7891554

prodomImg

O06957 sp|O06957|O06957_9ZZZZ

174

S=332 I=48 E=6.75377e-32

Putative uncharacterized protein

Pubmed 8029323,7891554

prodomImg

Q17U30 sp|Q17U30|Q17U30_ECOLX

174

S=332 I=48 E=6.75377e-32

Putative uncharacterized protein ; Plasmid

Pubmed 15963296,16027145

prodomImg

B6UZ58 sp|B6UZ58|B6UZ58_KLEPN

174

S=332 I=48 E=7.30507e-32

Restriction endonuclease family ; Plasmid

Pubmed 19258268

prodomImg

IPR007560 [PF04471]

167

Restriction endonuclease, type IV-like, Mrr

[seg]

[SignalP-NN(euk)]

[tmhmm]

Suggestions

Suggest an annotation
Move your mouse over each field to get more informations
ID
DE
EC
GO
PM
CC
CL
	Your email
	Validation code (copy this one UpHjR6Rg)

Access unfiltered results

	Set of Uniprot with relevant PubMed cross-references ncbi-blastp	7 hits
	Swiss-Prot ncbi-blastp	0 hits
	Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp	0 hits
	HAMAP scan	0 hits
	IprScan	6 hits

Miscellaneous analyses

ERROR Tag PERLLIB Portal/Tools.pl GetLocalBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBvXJZ85/XFF4834R_plc00430.xml_fasta", "https://iant.toulouse.inra.fr/bacteria/annotation/web/img/XFF4834R.png"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

ERROR Tag PERLLIB Portal/Tools.pl GetNcbiBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBvXJZ85/XFF4834R_plc00430.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

ERROR Tag PERLLIB Portal/Tools.pl GetUniprotBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBvXJZ85/XFF4834R_plc00430.xml_fasta"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

ERROR Tag PERLLIB Portal/Tools.pl GetKeggBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBvXJZ85/XFF4834R_plc00430.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

XFF4834R_chr13520

Suggest an annotation

XFF4834R_chr31210385_3299353_f2_XFF4834R-XFF4834R_chr28660 XFF4834R_chr28660

Suggest an annotation

XFF4834R_chr36570333_3896512_r3_XFF4834R-XFF4834R_chr33750 XFF4834R_chr33750

Suggest an annotation

XFF4834R_chr_4951849_4952112_f1_XFF4834R-XFF4834R_chr42740 XFF4834R_chr42740

Suggest an annotation

XFF4834R_plc00240

Suggest an annotation

XFF4834R_plc_0036603_0037172_f3_XFF4834R-XFF4834R_plc00430 XFF4834R_plc00430

Suggest an annotation