6 hits
XFF4834R_chr13520 | XFF4834R_chr13520 | putative DNA methylase N-terminal fragment, pseudogene |
XFF4834R_chr28660 | XFF4834R_chr31210385_3299353_f2_XFF4834R-XFF4834R_chr28660 | XFF4834R_chr28660 | putative restriction endonuclease, type IV-like |
XFF4834R_chr33750 | XFF4834R_chr36570333_3896512_r3_XFF4834R-XFF4834R_chr33750 | XFF4834R_chr33750 | probable type I restriction-modification system endonuclease |
XFF4834R_chr42740 | XFF4834R_chr_4951849_4952112_f1_XFF4834R-XFF4834R_chr42740 | XFF4834R_chr42740 | putative Type-2 restriction endonuclease BsuBI/PstI |
XFF4834R_plc00240 | XFF4834R_plc00240 | Probable Type II restriction endonuclease XcyI |
XFF4834R_plc00430 | XFF4834R_plc_0036603_0037172_f3_XFF4834R-XFF4834R_plc00430 | XFF4834R_plc00430 | putative restriction endonuclease protein |
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![]() DrawMap |
XML file
FASTA file |
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Extract Sequence |
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ID | |
AC | XFF4834R_chr13520 |
LO | XFF4834R_chr13520 |
DE | putative DNA methylase N-terminal fragment, pseudogene |
CL | 2.1.2 DNA restriction/modification GO:0006304 GO:0009307 |
GO |
InterPro Curated |
PM | |
AN | The pseudogene XFF4834R_chr13520 replaces ORF XFF4834R_chr_1460 which corresponded to the N-terminal fragment (8%) of a putative DNA methylase (XCV2165) predicted in Xav. |
CC | MODEL: |
CC | STATUS: curated by darrasse (20120413) |
SQ | 306 nt |
........10........20........30........40........50 |
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[seg] | 3 |
23 |
- |
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[seg] | 31 |
45 |
- |
Access unfiltered results
![]() |
Set of Uniprot with relevant PubMed cross-references ncbi-blastx |
0 hits |
![]() |
Swiss-Prot ncbi-blastx |
0 hits |
![]() |
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastx |
0 hits |
![]() |
IprScan |
2 hits |
Miscellaneous analyses
![]() XFF4834R_chr_3022 |
![]() DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
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![]() |
![]() XFF4834R_chr28670 |
ID | XFF4834R_chr31210385_3299353_f2_XFF4834R-XFF4834R_chr28660 |
AC | XFF4834R_chr28660 |
LT | XFF4834R_chr28660 |
OR | XFF4834R_chr from 3298361 to 3299353 on strand + |
DE | putative restriction endonuclease, type IV-like |
IP | Restriction endonuclease, type IV-like, Mrr |
CL | 2.1.2 DNA restriction/modification GO:0006304 GO:0009307 |
EC | |
GO |
InterPro Biological Process: DNA restriction-modification system (GO:0009307) Molecular Function: endonuclease activity (GO:0004519) Molecular Function: DNA binding (GO:0003677) Curated |
PM | |
AN | modification du start, en accord avec usage du code, force du start et alignements autres xanthos |
CC | COG: [S] Function unknown; |
CC | MODEL: XFF4834R |
CC | STATUS: curated by darrasse (20120404) |
MW | 35304.6 Da |
SQ | 330 aa |
........10........20........30........40........50 |
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YP_363414.1 XCV1683 |
25 |
159 |
S=707 I=100 E=1.57397e-78 |
hypothetical protein |
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YP_363414.1 XCV1683 |
251 |
330 |
S=412 I=98 E=7.02979e-43 |
hypothetical protein |
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NP_636954.1 XCC1583 |
25 |
159 |
S=677 I=95 E=6.61733e-75 |
hypothetical protein |
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NP_636954.1 XCC1583 |
251 |
330 |
S=378 I=88 E=1.15165e-38 |
hypothetical protein |
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NP_641973.1 XAC1641-XAC1641 |
25 |
159 |
S=673 I=92 E=2.05555e-74 |
hypothetical protein |
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NP_641973.1 XAC1641-XAC1641 |
251 |
330 |
S=410 I=98 E=1.17583e-42 |
hypothetical protein |
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XALc_1712 XALc_1712 |
25 |
159 |
S=384 I=54 E=1.9448e-39 |
putative_membrane_protein_pd-(d/e)xk_nuclease_superfamily |
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XALc_1712 XALc_1712 |
253 |
330 |
S=275 I=63 E=3.39065e-26 |
putative_membrane_protein_pd-(d/e)xk_nuclease_superfamily |
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IPR007560 [PF04471] | 75 |
146 |
Restriction endonuclease, type IV-like, Mrr |
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[seg] | 4 |
24 |
- |
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[seg] | 160 |
224 |
- |
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[seg] | 229 |
250 |
- |
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[SignalP-NN(euk)] | 1 |
20 |
- |
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[tmhmm] | 4 |
25 |
- |
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[tmhmm] | 170 |
192 |
- |
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25 |
159 |
S=669 I=90 E=1.70863e-73 |
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251 |
330 |
S=408 I=95 E=6.26546e-42 |
Access unfiltered results
![]() |
Set of Uniprot with relevant PubMed cross-references ncbi-blastp |
0 hits |
![]() |
Swiss-Prot ncbi-blastp |
0 hits |
![]() |
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp |
2 hits |
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HAMAP scan |
0 hits |
![]() |
IprScan |
7 hits |
Miscellaneous analyses
![]() XFF4834R_chr33740 |
![]() DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
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![]() XFF4834R_chr33770 |
ID | XFF4834R_chr36570333_3896512_r3_XFF4834R-XFF4834R_chr33750 |
AC | XFF4834R_chr33750 |
LT | XFF4834R_chr33750 |
OR | XFF4834R_chr from 3893333 to 3896512 on strand - |
DE | probable type I restriction-modification system endonuclease |
IP | Restriction endonuclease, type I, EcoRI, R subunit; Restriction endonuclease, type I, R subunit/Type III, Res subunit; Helicase, superfamily 1/2, ATP-binding domain; |
CL | 2.1.2 DNA restriction/modification GO:0006304 GO:0009307 |
EC | |
GO |
InterPro Biological Process: DNA restriction-modification system (GO:0009307) Biological Process: DNA modification (GO:0006304) Molecular Function: hydrolase activity (GO:0016787) Molecular Function: Type I site-specific deoxyribonuclease activity (GO:0009035) Molecular Function: ATP binding (GO:0005524) Molecular Function: DNA binding (GO:0003677) Molecular Function: endonuclease activity (GO:0004519) Curated |
PM | |
AN | |
CC | COG: [V] Defense mechanisms; |
CC | MODEL: XFF4834R |
CC | STATUS: curated by poussier (20100710) |
MW | 116789.5 Da |
SQ | 1059 aa |
........10........20........30........40........50 |
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NP_638253.1 lcl|XCC2905 |
44 |
722 |
S=539 I=29 E=1.0879e-57 |
HsdR protein |
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NP_641505.1 lcl|XAC1169-XAC1169 |
1020 |
1059 |
S=196 I=98 E=4.35432e-16 |
hypothetical protein |
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YP_362240.1 lcl|hsdR1-XCV0509 |
645 |
714 |
S=182 I=51 E=1.96618e-14 |
type I site-specific deoxyribonuclease (restriction subunit) |
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YP_362240.1 lcl|hsdR1-XCV0509 |
313 |
490 |
S=152 I=33 E=8.63457e-11 |
type I site-specific deoxyribonuclease (restriction subunit) |
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NP_635856.1 lcl|hsdR-XCC0462 |
645 |
714 |
S=173 I=49 E=2.88314e-13 |
type I restriction-modification system endonuclease |
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NP_635856.1 lcl|hsdR-XCC0462 |
313 |
490 |
S=149 I=33 E=2.11958e-10 |
type I restriction-modification system endonuclease |
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NP_643207.1 lcl|hsdR-XAC2898 |
144 |
713 |
S=137 I=25 E=5.77213e-09 |
type I restriction-modification system endonuclease |
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YP_362925.1 lcl|hsdR2-XCV1194 |
646 |
713 |
S=115 I=31 E=2.5816e-06 |
type I site-specific deoxyribonuclease (restriction subunit) |
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YP_362925.1 lcl|hsdR2-XCV1194 |
304 |
427 |
S=102 I=35 E=9.21205e-05 |
type I site-specific deoxyribonuclease (restriction subunit) |
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3 |
1059 |
S=2389 I=47 E=0 |
Hsdr-like Type I restriction enzyme |
||
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1 |
1054 |
S=2375 I=44 E=0 |
Type I restriction-modification system endonuclease Type I restriction-modification system endonuclease homologue |
||
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1 |
1055 |
S=2366 I=44 E=0 |
Type I restriction-modification system endonuclease homologue |
Pubmed 15215121 |
|
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43 |
1054 |
S=2183 I=43 E=0 |
HsdR |
Pubmed 15699185 |
|
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43 |
1054 |
S=2181 I=43 E=0 |
HsdR |
Pubmed 15699185 |
|
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4 |
1054 |
S=1952 I=41 E=0 |
Putative type I restriction enzyme HindVIIP R protein EC=3.1.21.3 ; ATP-binding DNA-binding Hydrolase Nucleotide-binding system |
||
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8 |
748 |
S=1119 I=36 E=1.91157e-126 |
Putative type-1 restriction enzyme MjaXP R protein EC=3.1.21.3 ; ATP-binding DNA-binding Hydrolase Nucleotide-binding Plasmid system |
||
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813 |
1033 |
S=330 I=32 E=8.04983e-31 |
Putative type-1 restriction enzyme MjaXP R protein EC=3.1.21.3 ; ATP-binding DNA-binding Hydrolase Nucleotide-binding Plasmid system |
||
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411 |
714 |
S=310 I=31 E=1.8722e-28 |
Uncharacterized protein MJ0124 |
||
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109 |
714 |
S=308 I=24 E=3.8604e-28 |
Uncharacterized protein MJ1214 |
||
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IPR021810 [PF11867] | 716 |
1058 |
Protein of unknown function DUF3387 |
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IPR007409 [PF04313] | 4 |
211 |
Restriction endonuclease, type I, EcoRI, R subunit/Type III, Res subunit, N-terminal |
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IPR006935 [PF04851] | 285 |
464 |
Restriction endonuclease, type I, R subunit/Type III, Res subunit |
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IPR014001 [SM00487] | 263 |
497 |
DEAD-like helicase, N-terminal |
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IPR004473 [TIGR00348] | 6 |
719 |
Restriction endonuclease, type I, EcoRI, R subunit |
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IPR014021 [PS51192] | 304 |
481 |
Helicase, superfamily 1/2, ATP-binding domain |
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[seg] | 628 |
644 |
- |
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[seg] | 779 |
790 |
- |
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[seg] | 797 |
811 |
- |
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[seg] | 948 |
960 |
- |
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729 |
796 |
S=257 I=69 E=1.82331e-23 |
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645 |
691 |
S=213 I=79 E=3.84313e-18 |
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1 |
108 |
S=192 I=51 E=1.38222e-15 |
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305 |
365 |
S=188 I=57 E=4.52419e-15 |
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871 |
928 |
S=187 I=64 E=5.87674e-15 |
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574 |
616 |
S=186 I=74 E=7.11933e-15 |
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362 |
404 |
S=174 I=79 E=2.47484e-13 |
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812 |
870 |
S=162 I=58 E=6.07008e-12 |
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232 |
286 |
S=156 I=61 E=3.09935e-11 |
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453 |
505 |
S=150 I=55 E=1.77244e-10 |
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[SSF52540] | 311 |
480 |
- |
Access unfiltered results
Miscellaneous analyses
![]() XFF4834R_chr42730 |
![]() DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
![]() |
![]() |
![]() XFF4834R_chr42750 |
ID | XFF4834R_chr_4951849_4952112_f1_XFF4834R-XFF4834R_chr42740 |
AC | XFF4834R_chr42740 |
LT | XFF4834R_chr42740 |
OR | XFF4834R_chr from 4951849 to 4952112 on strand + |
DE | putative Type-2 restriction endonuclease BsuBI/PstI |
IP | Restriction endonuclease, type II, BsuBI/PstI, C-terminal |
CL | 2.1.2 DNA restriction/modification GO:0006304 GO:0009307 |
EC | |
GO |
InterPro Biological Process: DNA restriction-modification system (GO:0009307) Molecular Function: magnesium ion binding (GO:0000287) Molecular Function: DNA binding (GO:0003677) Molecular Function: Type II site-specific deoxyribonuclease activity (GO:0009036) Curated |
PM | |
AN | |
CC | COG: [S] Function unknown; |
CC | MODEL: XFF4834R |
CC | STATUS: curated by jacques (20100920) |
MW | 9966.2 Da |
SQ | 87 aa |
........10........20........30........40........50 |
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5 |
70 |
S=189 I=59 E=3.06175e-15 |
Type II restriction enzyme BsuBI ; Plasmid |
Pubmed 16165318 |
|
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6 |
68 |
S=184 I=59 E=1.31316e-14 |
Type-2 restriction enzyme BsuBI EC=3.1.21.4 ; Endonuclease Hydrolase Magnesium system |
Pubmed 1480472 |
|
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5 |
68 |
S=158 I=49 E=2.07928e-11 |
Methyltransferase-endonuclease |
Pubmed 12620628 |
|
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6 |
71 |
S=116 I=40 E=2.50843e-06 |
Type-2 restriction enzyme PstI EC=3.1.21.4 ; Endonuclease Hydrolase Magnesium system |
Pubmed 6330092 |
|
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6 |
68 |
S=184 I=59 E=8.65583e-15 |
Type-2 restriction enzyme BsuBI EC=3.1.21.4 ; Endonuclease Hydrolase Magnesium system |
||
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6 |
71 |
S=116 I=40 E=1.65347e-06 |
Type-2 restriction enzyme PstI EC=3.1.21.4 ; Endonuclease Hydrolase Magnesium system |
||
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IPR009528 [PF06616] | 43 |
69 |
Restriction endonuclease, type II, BsuBI/PstI, C-terminal |
![]() |
6 |
68 |
S=132 I=45 E=1.61175e-08 |
Access unfiltered results
![]() |
Set of Uniprot with relevant PubMed cross-references ncbi-blastp |
4 hits |
![]() |
Swiss-Prot ncbi-blastp |
2 hits |
![]() |
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp |
0 hits |
![]() |
HAMAP scan |
0 hits |
![]() |
IprScan |
1 hits |
Miscellaneous analyses
![]() XFF4834R_plc00230 |
![]() DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
![]() |
![]() |
![]() XFF4834R_plc_0025 |
ID | |
AC | XFF4834R_plc00240 |
LT | XFF4834R_plc00240 |
OR | XFF4834R_plc from 18106 to 19107 on strand + |
DE | Probable Type II restriction endonuclease XcyI |
IP | Restriction endonuclease, type II, XcyI |
CL | 2.1.2 DNA restriction/modification GO:0006304 GO:0009307 |
EC | |
GO |
InterPro Biological Process: DNA restriction-modification system (GO:0009307) Molecular Function: magnesium ion binding (GO:0000287) Molecular Function: DNA binding (GO:0003677) Molecular Function: Type II site-specific deoxyribonuclease activity (GO:0009036) Curated |
PM | |
AN | |
CC | COG: [S] Function unknown; |
CC | MODEL: XFF4834R |
CC | STATUS: curated by szurek (20101122) |
MW | 36765.7 Da |
SQ | 333 aa |
........10........20........30........40........50 |
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1 |
333 |
S=1546 I=92 E=1.15447e-178 |
Probable restriction endonuclease R.XmaI ; Plasmid |
Pubmed 16697042 |
|
![]() |
1 |
333 |
S=1532 I=91 E=6.09879e-177 |
Type-2 restriction enzyme XcyI EC=3.1.21.4 ; Endonuclease Hydrolase Magnesium system |
Pubmed 1475187 |
|
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1 |
333 |
S=1482 I=88 E=6.79661e-171 |
Pac25I endonuclease ; Plasmid |
||
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5 |
330 |
S=1225 I=75 E=9.80487e-140 |
Type-2 restriction enzyme Cfr9I EC=3.1.21.4 ; Endonuclease Hydrolase Magnesium system |
Pubmed 8163180 |
|
![]() |
1 |
333 |
S=1532 I=91 E=4.20085e-177 |
Type-2 restriction enzyme XcyI EC=3.1.21.4 ; Endonuclease Hydrolase Magnesium system |
||
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5 |
330 |
S=1225 I=75 E=6.7536e-140 |
Type-2 restriction enzyme Cfr9I EC=3.1.21.4 ; Endonuclease Hydrolase Magnesium system |
||
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IPR019071 [PF09571] | 10 |
327 |
Restriction endonuclease, type II, XcyI |
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[seg] | 116 |
125 |
- |
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[seg] | 133 |
148 |
- |
![]() |
149 |
327 |
S=664 I=76 E=5.80968e-73 |
![]() |
10 |
114 |
S=498 I=90 E=9.0695e-53 |
Access unfiltered results
![]() |
Set of Uniprot with relevant PubMed cross-references ncbi-blastp |
4 hits |
![]() |
Swiss-Prot ncbi-blastp |
2 hits |
![]() |
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp |
0 hits |
![]() |
HAMAP scan |
0 hits |
![]() |
IprScan |
3 hits |
Miscellaneous analyses
![]() XFF4834R_plc00430 |
![]() DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
![]() |
![]() |
![]() XFF4834R_plc_0044 |
ID | XFF4834R_plc_0036603_0037172_f3_XFF4834R-XFF4834R_plc00430 |
AC | XFF4834R_plc00430 |
LT | XFF4834R_plc00430 |
OR | XFF4834R_plc from 35603 to 36172 on strand + |
DE | putative restriction endonuclease protein |
IP | Restriction endonuclease, type IV-like, Mrr |
CL | 2.1.2 DNA restriction/modification GO:0006304 GO:0009307 |
EC | |
GO |
InterPro Biological Process: DNA restriction-modification system (GO:0009307) Molecular Function: endonuclease activity (GO:0004519) Molecular Function: DNA binding (GO:0003677) Curated |
PM | |
AN | |
CC | COG: [V] Defense mechanisms; |
CC | MODEL: XFF4834R |
CC | STATUS: curated by poussier (20100713) |
MW | 21509.6 Da |
SQ | 189 aa |
........10........20........30........40........50 |
![]() |
44 |
188 |
S=608 I=81 E=6.41949e-67 |
putative restriction endonuclease protein |
![]() |
44 |
174 |
S=332 I=48 E=6.29874e-32 |
Restriction endonuclease family ; Plasmid |
Pubmed 19258268 |
|
![]() |
44 |
174 |
S=332 I=48 E=6.75377e-32 |
Putative uncharacterized protein |
||
![]() |
44 |
174 |
S=332 I=48 E=6.75377e-32 |
Putative uncharacterized protein |
||
![]() |
44 |
174 |
S=332 I=48 E=6.75377e-32 |
Putative uncharacterized protein ; Plasmid |
||
![]() |
44 |
174 |
S=332 I=48 E=7.30507e-32 |
Restriction endonuclease family ; Plasmid |
Pubmed 19258268 |
|
![]() |
IPR007560 [PF04471] | 74 |
167 |
Restriction endonuclease, type IV-like, Mrr |
![]() |
[seg] | 6 |
25 |
- |
![]() |
[seg] | 26 |
43 |
- |
![]() |
[seg] | 67 |
78 |
- |
![]() |
[SignalP-NN(euk)] | 1 |
24 |
- |
![]() |
[tmhmm] | 5 |
27 |
- |
Access unfiltered results
![]() |
Set of Uniprot with relevant PubMed cross-references ncbi-blastp |
7 hits |
![]() |
Swiss-Prot ncbi-blastp |
0 hits |
![]() |
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp |
0 hits |
![]() |
HAMAP scan |
0 hits |
![]() |
IprScan |
6 hits |
Miscellaneous analyses