Xanthomonas fuscans subsp. fuscans

10 hits

  1. XFF4834R_chr18280XFF4834R_chr19570711_2090547_f1_XFF4834R-XFF4834R_chr18280XFF4834R_chr18280putative outer membrane protein
  2. XFF4834R_chr19090amiCXFF4834R_chr19090putative N-acetylmuramoyl-L-alanine amidase
  3. XFF4834R_chr24170XFF4834R_chr_2786303_2788060_r3_XFF4834R-XFF4834R_chr24170XFF4834R_chr24170putative N-acetylmuramoyl-L-alanine amidase
  4. XFF4834R_chr27260XFF4834R_chr29760196_3142734_r1_XFF4834R-XFF4834R_chr27260XFF4834R_chr27260putative membrane-bound lytic murein transglycosylase D
  5. XFF4834R_chr27830XFF4834R_chr30420042_3212839_r3_XFF4834R-XFF4834R_chr27830XFF4834R_chr27830putative peptidoglycan-specific endopeptidase
  6. XFF4834R_chr31670nagZXFF4834R_chr31670probable beta-N-acetylglucosaminidase
  7. XFF4834R_chr34560sltXFF4834R_chr34560putative soluble lytic murein transglycosylase
  8. XFF4834R_chr37490ampDXFF4834R_chr37490probable N-acetylmuramoyl-L-alanine amidase
  9. XFF4834R_chr41640XFF4834R_chr_4843538_4845694_r3_XFF4834R-XFF4834R_chr41640XFF4834R_chr41640putative lytic murein transglycosylase
  10. XFF4834R_plc00360XFF4834R_plc_0030113_0031384_r1_XFF4834R-XFF4834R_plc00360XFF4834R_plc00360putative lytic murein transglycosylase

XFF4834R_chr19570711_2090547_f1_XFF4834R-XFF4834R_chr18280 XFF4834R_chr18280
XFF4834R_chr18270
XFF4834R_chr18270 		Cluster
DrawMap 		XML file

FASTA file 		Extract
Sequence 		Codon
Usage 		Framed OrthoMCL XFF4834R_chr18290
XFF4834R_chr18290
ID XFF4834R_chr19570711_2090547_f1_XFF4834R-XFF4834R_chr18280
AC XFF4834R_chr18280
LT XFF4834R_chr18280
OR XFF4834R_chr from 2089711 to 2090547 on strand +
DE putative outer membrane protein
IP MltA-interacting MipA
CL 1.7.34 Peptidoglycan (murein) turnover, recycling GO:0000270
EC
GO InterPro


Curated
PM
AN This family consists of several bacterial MltA-interacting protein (MipA) like sequences. As well as interacting with the membrane-bound lytic transglycosylase MltA, MipA is known to bind to PBP1B, a bifunctional murein transglycosylase/transpeptidase. MipA is considered to be a structural protein mediating the assembly of MltA to PBP1B into a complex.
CC COG: [M] Cell wall/membrane/envelope biogenesis;
CC MODEL: XFF4834R
CC STATUS: curated by irobene (20100825)
MW 29929.2 Da
SQ 278 aa
  
........10........20........30........40........50
         |         |         |         |         |
MNVSSFNRQRATHAVRAGVLACMSALPCIAHAQTDLTGSSRLLGDRTEIT
AGAAAVATPEYAGAERARVQFNPVLVVQRGVLFFDTSRGGGLQFQSKSGF
YISQSLYYDLGRLQSDSNWRPGSRLLAGMGDVPGSVTARTLVMQQVTPYM
NVNAEAEFTLKDAARRNRYRAGMEFTLLHSANDTVTLDLDVHGGDRRFNQ
AYFGVTDAQAARTRFTAFNAGSGAYAAAVGGSWTHSLGDHWATTLGVTGT
RYLDNAEDSPLVARRSVVSGNLALTYSR

    






    

        
            
                X.species
            
                
        
NP_643110.1 lcl|XAC2801-XAC2801

        
1

	
278

	
S=1325 I=91 E=1.62695e-153

	
hypothetical protein

     	

   





    

        
            
                X.species
            
                
        
YP_364693.1 lcl|ompV-XCV2962

        
1

	
278

	
S=1323 I=91 E=2.47244e-153

	
outer membrane protein V

     	

   





    

        
            
                X.species
            
                
        
 lcl|XALc_1556

        
14

	
278

	
S=684 I=50 E=6.83481e-76

	
putative outer membrane protein

     	

   





    

        
            
                
            
                
        
PDA252X8

        
1

	
44

	
S=203 I=89 E=4.42073e-17

    	
    





    

        
            
                
            
                
        
PD662439

        
140

	
179

	
S=200 I=95 E=8.95779e-17

    	
    





    

        
            
                
            
                
        
PD449049

        
45

	
132

	
S=146 I=38 E=3.53421e-10

    	
    





    

        
            
                
            
                
        
PDA4N957

        
116

	
174

	
S=129 I=46 E=3.88346e-08

    	
    




Show or not Suggestions
Suggest an annotation


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ID


DE


EC


GO


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  Your email  
 
  Validation code (copy this one hrzNuKLi)  
 
     



Show or not Access unfiltered results






    

       
            
                pubmed
            
        
	    
            
Set of Uniprot with relevant PubMed cross-references ncbi-blastp

        		
 	    
            0 hits
        
    

    

        
            
                swiss-prot
            
        
	    
            
Swiss-Prot ncbi-blastp

        		
 	    
            0 hits
        
    

    
    
    

        
            
                XFF4834R
            
        
    	
            
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp

        		        
        
            0 hits
        
    

        
    

        
            
                hamap
            
        
	
            
HAMAP scan

        		        
        
            0 hits
        
    

    
    

	    
            
                Interpro Scan
            
            
	        
                
IprScan

            		        
            
                0 hits
            
    








Show or not Miscellaneous analyses




    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetLocalBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBiUcv6h/XFF4834R_chr18280.xml_fasta", "https://iant.toulouse.inra.fr/bacteria/annotation/web/img/XFF4834R.png"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    
    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetNcbiBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBiUcv6h/XFF4834R_chr18280.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetUniprotBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBiUcv6h/XFF4834R_chr18280.xml_fasta"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetKeggBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBiUcv6h/XFF4834R_chr18280.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    

    






amiC XFF4834R_chr19090




    

         
             
            XFF4834R_chr19080
            
XFF4834R_chr19080
            
        		


       
           
	   Cluster
	   
DrawMap
	   
        		
	
        
            XML file
        	


	    FASTA file
        		
	
	
             
            Extract
Sequence
            
        		
	
	
             
            Codon
Usage
            
        		
    
    
            
            Framed
            
     
  	



	
            OrthoMCL
            
    
  	
    
    
    

     


	
             
            XFF4834R_chr19100
            
XFF4834R_chr19100
            
        		

    





    

        ID
        amiC
    

    

        AC
        XFF4834R_chr19090
    

    

        LT
        XFF4834R_chr19090
    

    

        OR
        XFF4834R_chr from 2185780 to 2186928 on strand +
    

   

        DE
        putative N-acetylmuramoyl-L-alanine amidase
  

   

        IP
        Cell wall hydrolase/autolysin, catalytic
  
  
  
  

        CL
        1.7.34 Peptidoglycan (murein) turnover, recycling	GO:0000270 
    

  

        EC
        
    

    
    

        GO
        
            InterPro
Biological Process: peptidoglycan catabolic process (GO:0009253)
Molecular Function: N-acetylmuramoyl-L-alanine amidase activity (GO:0008745)


            Curated

        		
    


  

        PM
        
    

  

        AN
        
    

  

        CC
        COG: [M] Cell wall/membrane/envelope biogenesis; 
    

    

        CC
        MODEL: XFF4834R 
  
    
  

        CC
        STATUS: curated by irobene (20100509)
  

  
  


    

        MW
        40637.7 Da
    


    

        SQ
        382 aa
    

    

         
        
........10........20........30........40........50
         |         |         |         |         |
MKRRALLQAASAAMALTPGLVRAAGRTRLQACSLQRGDQGTKLRLSLSAP
TQYHMFSLTGPQRLVIDLGQVAPALPPIAAIADGEPVNGIRAGVHGDSVR
VVLDLTRPVAAQPRWQGGELLVDLGGEAAAKTGEAPEVSHVADALGHRLR
PYVVAIDAGHGGKDPGAVSADARYEKHVAMAVAGRLHQRLASDARYRPTM
IRSDDRFVPLHERVLIAHRHNADLFVSIHADAAPTRQARGASVFALSQTG
ASSALARWIADSENAADDMGDTARRLRVPSNPVLSQVLADLSLSGTIASS
LAFGTLMLERLQQVTRLHQNQVGQAGFAVLKSPDIPSLLVETGFMSNRDD
CSRLCSDTHQDELAQTLHAGIDDYFAAFPGRA

    






    

        
            
                XFF4834R
            
                
        
XFF4834R_chr24170 lcl|XFF4834R_chr_2786303_2788060_r3_XFF4834R-XFF4834R_chr24170

        
137

	
379

	
S=423 I=42 E=1.16823e-44

	

     	

   





    

        
            
                XFF4834R
            
                
        
XFF4834R_chr24170 lcl|XFF4834R_chr_2786303_2788060_r3_XFF4834R-XFF4834R_chr24170

        
137

	
379

	
S=423 I=42 E=1.16823e-44

	

     	

   





    

        
            
                X.species
            
                
        
NP_642108.1 lcl|amiC-XAC1780

        
1

	
382

	
S=1383 I=73 E=2.01763e-160

	
N-acetylmuramoyl-L-alanine amidase

     	

   





    

        
            
                X.species
            
                
        
NP_637130.1 lcl|amiC-XCC1763

        
1

	
382

	
S=1348 I=72 E=3.76721e-156

	
N-acetylmuramoyl-L-alanine amidase

     	

   





    

        
            
                X.species
            
                
        
YP_363543.1 lcl|amiC-XCV1812

        
1

	
382

	
S=1333 I=72 E=2.49648e-154

	
N-acetylmuramoyl-L-alanine amidase precursor

     	

   





    

        
            
                X.species
            
                
        
 lcl|amiC-XALc_1199

        
18

	
379

	
S=1065 I=61 E=7.6165e-122

	
probable n-acetylmuramoyl-l-alanine amidase precursor protein

     	

   





    

        
            
                X.species
            
                
        
NP_637654.1 lcl|amiC-XCC2299

        
137

	
375

	
S=444 I=43 E=1.36382e-46

	
N-acetylmuramoyl-L-alanine amidase

     	

   





    

        
            
                X.species
            
                
        
YP_364334.1 lcl|amiC-XCV2603

        
137

	
379

	
S=422 I=42 E=5.78883e-44

	
N-acetylmuramoyl-L-alanine amidase precursor

     	

   





    

        
            
                X.species
            
                
        
NP_642722.1 lcl|amiC-XAC2406

        
137

	
379

	
S=421 I=42 E=6.95196e-44

	
N-acetylmuramoyl-L-alanine amidase

     	

   





    

        
            
                X.species
            
                
        
 lcl|amiC-XALc_1093

        
149

	
379

	
S=418 I=40 E=1.69173e-43

	
hypothetical n-acetylmuramoyl-l-alanine amidase protein

     	

   





    

        
                pubmed
        
        

        
150

	
379

	
S=474 I=48 E=1.03277e-48

	
Putative acetyl-muramoyl-alanine amidase

	
Pubmed 15658985

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
153

	
378

	
S=447 I=43 E=2.31772e-45

	
Probable N-acetylmuramoyl-L-alanine amidase amiA EC=3.5.1.28 ; Cell wall biogenesis/degradation Hydrolase Secreted Signal

	
Pubmed 8300522

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
153

	
379

	
S=441 I=40 E=1.04743e-44

	
N-acetylmuramoyl-L-alanine amidase amiB EC=3.5.1.28 ; Cell wall biogenesis/degradation Hydrolase Secreted Signal

	
Pubmed 7511774

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
153

	
378

	
S=440 I=42 E=1.45886e-44

	
Probable N-acetylmuramoyl-L-alanine amidase amiA EC=3.5.1.28 ; Cell wall biogenesis/degradation Hydrolase Secreted Signal

	
Pubmed 8349542

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
153

	
379

	
S=431 I=41 E=1.53592e-43

	
N-acetylmuramoyl-L-alanine amidase amiB EC=3.5.1.28 ; Cell wall biogenesis/degradation Hydrolase Secreted Signal

	
Pubmed 2676972

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
41

	
375

	
S=427 I=34 E=4.72964e-43

	
Putative N-acetylmuramoyl-L-alanine amidase-precursor AmiC

	
Pubmed 10844690

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
41

	
375

	
S=423 I=33 E=1.52132e-42

	
AmiC

	
Pubmed 10844690

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
41

	
375

	
S=416 I=34 E=1.21174e-41

	
N-acetylmuramoyl-L-alanine amidase amiC EC=3.5.1.28 ; Cell wall biogenesis/degradation Hydrolase Secreted Signal

	
Pubmed 17038831

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
86

	
379

	
S=355 I=34 E=3.06214e-34

	
Predicted N-acetylmuramoyl-L-alanine amidase

	
Pubmed 10988064

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
23

	
229

	
S=188 I=30 E=4.907e-14

	
CwlV

	
Pubmed 10628856

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
148

	
376

	
S=511 I=45 E=2.14209e-53

	
N-acetylmuramoyl-L-alanine amidase amiC EC=3.5.1.28 ; Cell wall biogenesis/degradation Hydrolase Secreted Signal

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
148

	
376

	
S=511 I=45 E=2.14209e-53

	
N-acetylmuramoyl-L-alanine amidase amiC EC=3.5.1.28 ; Cell wall biogenesis/degradation Hydrolase Secreted Signal

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
153

	
378

	
S=447 I=43 E=1.59581e-45

	
Probable N-acetylmuramoyl-L-alanine amidase amiA EC=3.5.1.28 ; Cell wall biogenesis/degradation Hydrolase Secreted Signal

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
153

	
379

	
S=441 I=40 E=7.21185e-45

	
N-acetylmuramoyl-L-alanine amidase amiB EC=3.5.1.28 ; Cell wall biogenesis/degradation Hydrolase Secreted Signal

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
153

	
378

	
S=440 I=42 E=1.00446e-44

	
Probable N-acetylmuramoyl-L-alanine amidase amiA EC=3.5.1.28 ; Cell wall biogenesis/degradation Hydrolase Secreted Signal

	

    

    

         
        
prodomImg

    





    

        
            
                
            
                
        
PD603210

        
259

	
335

	
S=162 I=49 E=3.89261e-12

    	
    





    

        
            
                
            
                
        
PD002984

        
190

	
263

	
S=140 I=46 E=1.933e-09

    	
    





    

        
            
                
            
                
        
PDA1L763

        
152

	
234

	
S=112 I=37 E=5.03106e-06

    	
    




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ID


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  Your email  
 
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Show or not Access unfiltered results






    

       
            
                pubmed
            
        
	    
            
Set of Uniprot with relevant PubMed cross-references ncbi-blastp

        		
 	    
            22 hits
        
    

    

        
            
                swiss-prot
            
        
	    
            
Swiss-Prot ncbi-blastp

        		
 	    
            18 hits
        
    

    
    
    

        
            
                XFF4834R
            
        
    	
            
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp

        		        
        
            1 hits
        
    

        
    

        
            
                hamap
            
        
	
            
HAMAP scan

        		        
        
            0 hits
        
    

    
    

	    
            
                Interpro Scan
            
            
	        
                
IprScan

            		        
            
                0 hits
            
    








Show or not Miscellaneous analyses




    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetLocalBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBiUcv6h/XFF4834R_chr19090.xml_fasta", "https://iant.toulouse.inra.fr/bacteria/annotation/web/img/XFF4834R.png"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    
    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetNcbiBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBiUcv6h/XFF4834R_chr19090.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetUniprotBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBiUcv6h/XFF4834R_chr19090.xml_fasta"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetKeggBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBiUcv6h/XFF4834R_chr19090.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    

    






XFF4834R_chr_2786303_2788060_r3_XFF4834R-XFF4834R_chr24170 XFF4834R_chr24170




    

         
             
            XFF4834R_chr24160
            
XFF4834R_chr24160
            
        		


       
           
	   Cluster
	   
DrawMap
	   
        		
	
        
            XML file
        	


	    FASTA file
        		
	
	
             
            Extract
Sequence
            
        		
	
	
             
            Codon
Usage
            
        		
    
    
            
            Framed
            
     
  	



	
            OrthoMCL
            
    
  	
    
    
    

     


	
             
            XFF4834R_chr24180
            
XFF4834R_chr24180
            
        		

    





    

        ID
        XFF4834R_chr_2786303_2788060_r3_XFF4834R-XFF4834R_chr24170
    

    

        AC
        XFF4834R_chr24170
    

    

        LT
        XFF4834R_chr24170
    

    

        OR
        XFF4834R_chr from 2786303 to 2788036 on strand -
    

   

        DE
        putative N-acetylmuramoyl-L-alanine amidase
  

   

        IP
        Cell wall hydrolase/autolysin, catalytic; Localisation of periplasmic protein complexes
  
  
  
  

        CL
        1.7.34 Peptidoglycan (murein) turnover, recycling	GO:0000270 
    

  

        EC
        
    

    
    

        GO
        
            InterPro
Biological Process: peptidoglycan catabolic process (GO:0009253)
Molecular Function: N-acetylmuramoyl-L-alanine amidase activity (GO:0008745)


            Curated

        		
    


  

        PM
        
    

  

        AN
        Zn-dependent peptidases AMIN : This N-terminal domain of various bacterial protein families is crucial for the targetting of periplasmic or extracellular proteins to specific regions of the bacterial envelope. AMIN is derived from the N-terminal domain of AmiC, an N-acetylmuramoyl-l-alanine amidase of Escherichia coli which localises to the septal ring during division and plays a key role in the separation of daughter cells. The AMIN domain is present in several protein families besides amidases suggesting that AMIN may represent a general targetting determinant involved in the localisation of periplasmic protein complexes [1].
    

  

        CC
        COG: [M] Cell wall/membrane/envelope biogenesis; 
    

    

        CC
        MODEL: XFF4834R 
  
    
  

        CC
        STATUS: curated by irobene (20100525)
  

  
  


    

        MW
        57970 Da
    


    

        SQ
        577 aa
    

    

         
        
........10........20........30........40........50
         |         |         |         |         |
MLESSAMTPGIRNFCRSALTASLSLAVFAAWGGEIKGVGVSTGATGTRAE
IQLAGSGGFKTLALANPTRLVVDFPESSGVRGLKLPPAAGLVTSVRTGQP
VPGTFRVVFELATPVTPLKPQMQTLGSVSTLVIEWPGDPTPAVASTVAAA
APTAAPAPRPLNAQAEAARATAALAASAQRASSVPPSPPSQPSTPPSAPS
VPASAMPTVTQAPVPTTVATGVPTPRPATSATTGAPAPTGVAGNTNRAAG
AITTVPSGAGGAGSSAAAAAILNGDSAPMGATPGNAAATAPSSASSVAAA
AGDDGLPPRPVLPSEASRIKMAPGMRPLVVAIDPGHGGQDPGAMGPTGKR
EKDVTLAVGRELAHQVNATPGMKAYLTRDTDVFIPLPMRAQKARAAKADI
FISIHADAAENRSATGSSVYVLSTKGASSQRARWLADKENAADLVGGVRL
QQTESTLANVLLDLAQSGHMKASEDAAGHVLGGLKRIGNNHKPQLERANF
AVLRTSDMPAMLVETAFISNPDEERRLIDPAYQRKIASAVLDGIDTFFTR
QPPPGTLFAARAQAEADAVGTVAGGSR

    





Show or not Domain decomposition
 

    

        
            
                XFF4834R
            
                
        
XFF4834R_chr19090 lcl|amiC-XFF4834R_chr19090

        
315

	
552

	
S=437 I=42 E=3.52288e-46

	
N-acetylmuramoyl-L-alanine amidase

     	

   





    

        
            
                X.species
            
                
        
NP_637654.1 lcl|amiC-XCC2299

        
303

	
577

	
S=1335 I=92 E=2.34527e-154

	
N-acetylmuramoyl-L-alanine amidase

     	

   





    

        
            
                X.species
            
                
        
NP_637654.1 lcl|amiC-XCC2299

        
1

	
138

	
S=541 I=81 E=3.4965e-58

	
N-acetylmuramoyl-L-alanine amidase

     	

   





    

        
            
                X.species
            
                
        
NP_642722.1 lcl|amiC-XAC2406

        
303

	
577

	
S=1316 I=99 E=4.16272e-152

	
N-acetylmuramoyl-L-alanine amidase

     	

   





    

        
            
                X.species
            
                
        
NP_642722.1 lcl|amiC-XAC2406

        
1

	
138

	
S=684 I=97 E=1.67556e-75

	
N-acetylmuramoyl-L-alanine amidase

     	

   





    

        
            
                X.species
            
                
        
YP_364334.1 lcl|amiC-XCV2603

        
246

	
577

	
S=1308 I=84 E=4.12314e-151

	
N-acetylmuramoyl-L-alanine amidase precursor

     	

   





    

        
            
                X.species
            
                
        
YP_364334.1 lcl|amiC-XCV2603

        
7

	
138

	
S=650 I=96 E=1.91996e-71

	
N-acetylmuramoyl-L-alanine amidase precursor

     	

   





    

        
            
                X.species
            
                
        
 lcl|amiC-XALc_1093

        
309

	
577

	
S=1131 I=83 E=1.04795e-129

	
hypothetical n-acetylmuramoyl-l-alanine amidase protein

     	

   





    

        
            
                X.species
            
                
        
 lcl|amiC-XALc_1093

        
53

	
138

	
S=298 I=63 E=9.14095e-29

	
hypothetical n-acetylmuramoyl-l-alanine amidase protein

     	

   





    

        
            
                X.species
            
                
        
 lcl|amiC-XALc_1199

        
326

	
552

	
S=479 I=44 E=1.17816e-50

	
probable n-acetylmuramoyl-l-alanine amidase precursor protein

     	

   





    

        
            
                X.species
            
                
        
YP_363543.1 lcl|amiC-XCV1812

        
325

	
552

	
S=443 I=43 E=2.78368e-46

	
N-acetylmuramoyl-L-alanine amidase precursor

     	

   





    

        
            
                X.species
            
                
        
NP_642108.1 lcl|amiC-XAC1780

        
313

	
552

	
S=442 I=42 E=3.81007e-46

	
N-acetylmuramoyl-L-alanine amidase

     	

   





    

        
            
                X.species
            
                
        
NP_637130.1 lcl|amiC-XCC1763

        
313

	
552

	
S=434 I=41 E=2.85506e-45

	
N-acetylmuramoyl-L-alanine amidase

     	

   





    

        Iprscan
        IPR002508
	[G3DSA:3.40.630.40]
	
327

	
548

	
	
Cell wall hydrolase/autolysin, catalytic

    





    

        Iprscan
        IPR002508
	[PF01520]
	
330

	
545

	
	
Cell wall hydrolase/autolysin, catalytic

    





    

        Iprscan
        IPR021731
	[PF11741]
	
32

	
118

	
	
Localisation of periplasmic protein complexes

    





    

        Iprscan
        IPR002508
	[SM00646]
	
390

	
545

	
	
Cell wall hydrolase/autolysin, catalytic

    





    

        Iprscan
        
	[seg]
	
139

	
158

	
	
-

    





    

        Iprscan
        
	[seg]
	
163

	
243

	
	
-

    





    

        Iprscan
        
	[seg]
	
257

	
270

	
	
-

    





    

        Iprscan
        
	[seg]
	
277

	
302

	
	
-

    





    

        Iprscan
        
	[SignalP-NN(euk)]
	
1

	
29

	
	
-

    





    

        Iprscan
        
	[SSF53187]
	
327

	
551

	
	
-

    




Show or not Suggestions
Suggest an annotation


Move your mouse over each field to get more informations


ID


DE


EC


GO


PM



CC


CL

 
  Your email  
 
  Validation code (copy this one 2U1RM8l9)  
 
     



Show or not Access unfiltered results






    

       
            
                pubmed
            
        
	    
            
Set of Uniprot with relevant PubMed cross-references ncbi-blastp

        		
 	    
            26 hits
        
    

    

        
            
                swiss-prot
            
        
	    
            
Swiss-Prot ncbi-blastp

        		
 	    
            31 hits
        
    

    
    
    

        
            
                XFF4834R
            
        
    	
            
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp

        		        
        
            3 hits
        
    

        
    

        
            
                hamap
            
        
	
            
HAMAP scan

        		        
        
            0 hits
        
    

    
    

	    
            
                Interpro Scan
            
            
	        
                
IprScan

            		        
            
                10 hits
            
    








Show or not Miscellaneous analyses




    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetLocalBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBiUcv6h/XFF4834R_chr24170.xml_fasta", "https://iant.toulouse.inra.fr/bacteria/annotation/web/img/XFF4834R.png"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    
    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetNcbiBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBiUcv6h/XFF4834R_chr24170.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetUniprotBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBiUcv6h/XFF4834R_chr24170.xml_fasta"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetKeggBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBiUcv6h/XFF4834R_chr24170.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    

    






XFF4834R_chr29760196_3142734_r1_XFF4834R-XFF4834R_chr27260 XFF4834R_chr27260




    

         
             
            XFF4834R_chr27250
            
XFF4834R_chr27250
            
        		


       
           
	   Cluster
	   
DrawMap
	   
        		
	
        
            XML file
        	


	    FASTA file
        		
	
	
             
            Extract
Sequence
            
        		
	
	
             
            Codon
Usage
            
        		
    
    
            
            Framed
            
     
  	



	
            OrthoMCL
            
    
  	
    
    
    

     


	
             
            XFF4834R_chr27270
            
XFF4834R_chr27270
            
        		

    





    

        ID
        XFF4834R_chr29760196_3142734_r1_XFF4834R-XFF4834R_chr27260
    

    

        AC
        XFF4834R_chr27260
    

    

        LT
        XFF4834R_chr27260
    

    

        OR
        XFF4834R_chr from 3141196 to 3142779 on strand -
    

   

        DE
        putative membrane-bound lytic murein transglycosylase D
  

   

        IP
        Lytic transglycosylase-like, catalytic; Peptidoglycan-binding lysin domain
  
  
  
  

        CL
        1.7.34 Peptidoglycan (murein) turnover, recycling	GO:0000270 
    

  

        EC
        
    

    
    

        GO
        
            InterPro
Biological Process: cell wall macromolecule catabolic process (GO:0016998)


            Curated

        		
    


  

        PM
        
    

  

        AN
        start change
    

  

        CC
        COG: [M] Cell wall/membrane/envelope biogenesis; 
    

    

        CC
        MODEL: XFF4834R 
  
    
  

        CC
        STATUS: curated by irobene (20100619)
  

  
  


    

        MW
        57007.2 Da
    


    

        SQ
        527 aa
    

    

         
        
........10........20........30........40........50
         |         |         |         |         |
MPLAHFGLRPWPVLAVVALMSVVPAAHAVSKRDTEKAAALDARMAAAEKR
YRDALVLVNNSDPKGTAEGDAALEDMEDIIDACIKQRGCLVSNQLATYKR
LLKARADAEAPAAEDPEDDDTLLQADPDHLGPASNGVPEAARAATLLNDQ
RHDFDKMVQYNPAVQAGIRRWLTDMRPALLTSYENYSNLRGVMWPEWQKR
GLPEALLFGIMAKESNGKVHASSRAGAAGLMQFMPATGRRFGLGPDGTGF
DTRFDARSAAEASAAYLNERMAGLNRSIELALAAYNGGEGRAARVFSQSG
GRGFWDQDVYNQFPAETKDYVPMVIAAAWIFLHPRQYGVDFPKLDAQPAT
LKLAKSTTIYELTICLGSMGTRDGYMRALRNLNPRYESDGWIPAGTVINA
TNRIVNLYTRYCVNGPRADLARTLITADLNSAIVRSSSAPEYVPSVAVGD
VSQMAGVPTTVATGQPAVAKPKAKQARSYTIARGDTLGRVAQKYQCEIKE
LAKANGLKAPSYALKPGQSIKLAGCDR

    





Show or not Domain decomposition
 

    

        
            
                XFF4834R
            
                
        
XFF4834R_chr24420 lcl|XFF4834R_chr26690099_2818082_r2_XFF4834R-XFF4834R_chr24420

        
201

	
290

	
S=123 I=38 E=3.7243e-08

	

     	

   





    

        
            
                XFF4834R
            
                
        
XFF4834R_chr10670 lcl|mltD-XFF4834R_chr10670

        
189

	
347

	
S=104 I=29 E=7.534e-06

	
predicted membrane-bound lytic murein transglycosylase D

     	

   





    

        
            
                X.species
            
                
        
YP_364612.1 lcl|XCV2881

        
1

	
527

	
S=2499 I=90 E=0

	
lytic mureine transglycosylase precursor

     	

   





    

        
            
                X.species
            
                
        
NP_643038.1 lcl|dniR-XAC2729

        
58

	
527

	
S=2276 I=92 E=0

	
membrane-bound lytic murein transglycosylase D precursor

     	

   





    

        
            
                X.species
            
                
        
NP_637905.1 lcl|dniR-XCC2557

        
56

	
527

	
S=2130 I=85 E=0

	
membrane-bound lytic murein transglycosylase D precursor

     	

   





    

        
            
                X.species
            
                
        
 lcl|XALc_0975

        
1

	
527

	
S=1845 I=66 E=0

	
putative membrane-bound lytic murein transglycosylase d precursor (murein hydrolase d) protein

     	

   





    

        
            
                X.species
            
                
        
 lcl|XALc_1263

        
185

	
290

	
S=133 I=38 E=8.34814e-09

	
hypothetical soluble lytic murein transglycosylase precursor protein

     	

   





    

        
            
                X.species
            
                
        
YP_364366.1 lcl|XCV2635

        
201

	
290

	
S=123 I=38 E=1.33567e-07

	
putative soluble lytic murein transglycosylase precursor

     	

   





    

        
            
                X.species
            
                
        
NP_642773.1 lcl|yjbJ-XAC2458

        
201

	
290

	
S=123 I=38 E=1.52228e-07

	
soluble lytic murein transglycosylase

     	

   





    

        
            
                X.species
            
                
        
NP_637679.1 lcl|yjbJ-XCC2325

        
201

	
290

	
S=121 I=38 E=2.2933e-07

	
soluble lytic murein transglycosylase

     	

   





    

        
            
                X.species
            
                
        
 lcl|mltD-XALc_0595

        
222

	
300

	
S=107 I=35 E=1.34512e-05

	
probable membrane-bound murein hydrolase d precursor protein

     	

   





    

        
            
                X.species
            
                
        
NP_641425.1 lcl|dniR-XAC1086

        
189

	
345

	
S=106 I=29 E=1.54648e-05

	
murein hydrolase D

     	

   





    

        
            
                X.species
            
                
        
YP_362817.1 lcl|mltD-XCV1086

        
189

	
347

	
S=105 I=28 E=2.09832e-05

	
membrane-bound murein hydrolase D

     	

   





    

        Iprscan
        
	[G3DSA:1.10.530.10]
	
189

	
351

	
	
-

    





    

        Iprscan
        
	[G3DSA:3.10.350.10]
	
475

	
525

	
	
-

    





    

        Iprscan
        
	[PTHR21666:SF10]
	
188

	
293

	
	
-

    





    

        Iprscan
        
	[PTHR21666]
	
188

	
293

	
	
-

    





    

        Iprscan
        IPR008258
	[PF01464]
	
198

	
302

	
	
Lytic transglycosylase-like, catalytic

    





    

        Iprscan
        IPR018392
	[PF01476]
	
479

	
522

	
	
Peptidoglycan-binding lysin domain

    





    

        Iprscan
        IPR002482
	[SM00257]
	
478

	
523

	
	
Peptidoglycan-binding Lysin subgroup

    





    

        Iprscan
        
	[seg]
	
37

	
47

	
	
-

    





    

        Iprscan
        
	[seg]
	
106

	
120

	
	
-

    





    

        Iprscan
        
	[seg]
	
256

	
265

	
	
-

    





    

        Iprscan
        
	[seg]
	
465

	
476

	
	
-

    





    

        Iprscan
        
	[SignalP-NN(euk)]
	
1

	
28

	
	
-

    





    

        Iprscan
        
	[SSF53955]
	
187

	
353

	
	
-

    





    

        Iprscan
        
	[SSF54106]
	
475

	
522

	
	
-

    




Show or not Suggestions
Suggest an annotation


Move your mouse over each field to get more informations


ID


DE


EC


GO


PM



CC


CL

 
  Your email  
 
  Validation code (copy this one Okuiqc7a)  
 
     



Show or not Access unfiltered results






    

       
            
                pubmed
            
        
	    
            
Set of Uniprot with relevant PubMed cross-references ncbi-blastp

        		
 	    
            7 hits
        
    

    

        
            
                swiss-prot
            
        
	    
            
Swiss-Prot ncbi-blastp

        		
 	    
            4 hits
        
    

    
    
    

        
            
                XFF4834R
            
        
    	
            
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp

        		        
        
            3 hits
        
    

        
    

        
            
                hamap
            
        
	
            
HAMAP scan

        		        
        
            0 hits
        
    

    
    

	    
            
                Interpro Scan
            
            
	        
                
IprScan

            		        
            
                14 hits
            
    








Show or not Miscellaneous analyses




    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetLocalBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBiUcv6h/XFF4834R_chr27260.xml_fasta", "https://iant.toulouse.inra.fr/bacteria/annotation/web/img/XFF4834R.png"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    
    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetNcbiBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBiUcv6h/XFF4834R_chr27260.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetUniprotBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBiUcv6h/XFF4834R_chr27260.xml_fasta"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetKeggBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBiUcv6h/XFF4834R_chr27260.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    

    






XFF4834R_chr30420042_3212839_r3_XFF4834R-XFF4834R_chr27830 XFF4834R_chr27830




    

         
             
            XFF4834R_chr27820
            
XFF4834R_chr27820
            
        		


       
           
	   Cluster
	   
DrawMap
	   
        		
	
        
            XML file
        	


	    FASTA file
        		
	
	
             
            Extract
Sequence
            
        		
	
	
             
            Codon
Usage
            
        		
    
    
            
            Framed
            
     
  	



	
            OrthoMCL
            
    
  	
    
    
    

     


	
             
            XFF4834R_chr27840
            
XFF4834R_chr27840
            
        		

    





    

        ID
        XFF4834R_chr30420042_3212839_r3_XFF4834R-XFF4834R_chr27830
    

    

        AC
        XFF4834R_chr27830
    

    

        LT
        XFF4834R_chr27830
    

    

        OR
        XFF4834R_chr from 3212042 to 3212821 on strand -
    

   

        DE
        putative peptidoglycan-specific endopeptidase
  

   

        IP
        Peptidase M23B; Peptidase M23; Peptidoglycan-binding lysin domain
  
  
  
  

        CL
        1.7.34 Peptidoglycan (murein) turnover, recycling	GO:0000270 
    

  

        EC
        
    

    
    

        GO
        
            InterPro
Biological Process: cell wall macromolecule catabolic process (GO:0016998)
Biological Process: proteolysis (GO:0006508)
Molecular Function: metalloendopeptidase activity (GO:0004222)


            Curated

        		
    


  

        PM
        
    

  

        AN
        start change 
    

  

        CC
        COG: [M] Cell wall/membrane/envelope biogenesis; 
    

    

        CC
        MODEL: XFF4834R 
  
    
  

        CC
        STATUS: curated by irobene (20100622)
  

  
  


    

        MW
        26677.2 Da
    


    

        SQ
        259 aa
    

    

         
        
........10........20........30........40........50
         |         |         |         |         |
MSKTQMNSARKTAVMLAVAIGLTACSSATVVRSPGASGSGSSSRPSAAPR
PSVPRPGATVTVQRGDTLYAISRRTNITAADLAAWNGLSSPNTIYPGQTL
KLYPPGASKPGGSAPVAGGTVAPPRPAVPIAAPVSSGFSWRWPADGVVVG
TFVTGETTKQGVDIAGTSGQAVRAAADGVVVYSGAGLVGYGELIIIKHND
QWLSAYGHNRKRLLNEGQSVKAGQQIAEMGRSGAARDMLHFEIRYNGKPV
DPLLYLPKK

    





Show or not Domain decomposition
 

    

        
            
                XFF4834R
            
                
        
XFF4834R_chr00250 lcl|envC-XFF4834R_chr00250

        
160

	
259

	
S=186 I=41 E=3.5301e-16

	
protease with a role in cell division

     	

   





    

        
            
                XFF4834R
            
                
        
XFF4834R_chr07910 lcl|XFF4834R_chr08370943_0914884_f2_XFF4834R-XFF4834R_chr07910

        
160

	
256

	
S=161 I=37 E=4.30317e-13

	

     	

   





    

        
            
                XFF4834R
            
                
        
XFF4834R_chr37850 lcl|XFF4834R_chr40950456_4376874_f1_XFF4834R-XFF4834R_chr37850

        
160

	
253

	
S=136 I=35 E=4.44474e-10

	

     	

   





    

        
            
                XFF4834R
            
                
        
XFF4834R_chr23660 lcl|XFF4834R_chr25860280_2737122_f1_XFF4834R-XFF4834R_chr23660

        
161

	
258

	
S=107 I=32 E=1.38928e-06

	

     	

   





    

        
            
                X.species
            
                
        
NP_642059.1 lcl|nlpD-XAC1728

        
1

	
259

	
S=923 I=71 E=7.1086e-105

	
lipoprotein

     	

   





    

        
            
                X.species
            
                
        
YP_363492.1 lcl|nlpD-XCV1761

        
1

	
259

	
S=914 I=71 E=8.30956e-104

	
outer membrane lipoprotein

     	

   





    

        
            
                X.species
            
                
        
NP_637079.1 lcl|nlpD-XCC1709

        
1

	
259

	
S=867 I=68 E=4.29946e-98

	
lipoprotein

     	

   





    

        
            
                X.species
            
                
        
 lcl|XALc_1160

        
7

	
259

	
S=686 I=55 E=3.3358e-76

	
putative outer membrane lipoprotein precursor

     	

   





    

        
            
                X.species
            
                
        
 lcl|XALc_0392

        
161

	
259

	
S=197 I=42 E=6.05345e-17

	
putative peptidase protein

     	

   





    

        
            
                X.species
            
                
        
NP_635417.1 lcl|XCC0022

        
160

	
259

	
S=188 I=41 E=7.52148e-16

	
hypothetical protein

     	

   





    

        
            
                X.species
            
                
        
YP_361756.1 lcl|XCV0025

        
160

	
259

	
S=185 I=41 E=1.86251e-15

	
putative peptidase

     	

   





    

        
            
                X.species
            
                
        
NP_640380.1 lcl|XAC0024-XAC0024

        
160

	
259

	
S=182 I=40 E=3.9422e-15

	
hypothetical protein

     	

   





    

        
            
                X.species
            
                
        
NP_636124.1 lcl|XCC0733

        
160

	
256

	
S=163 I=37 E=9.49403e-13

	
peptidase

     	

   





    

        
            
                X.species
            
                
        
NP_641139.1 lcl|XAC0787-XAC0787

        
160

	
256

	
S=161 I=37 E=1.43027e-12

	
peptidase

     	

   





    

        
            
                X.species
            
                
        
YP_362569.1 lcl|XCV0838

        
160

	
256

	
S=161 I=37 E=1.48103e-12

	
membrane-bound metalloendopeptidase

     	

   





    

        
            
                X.species
            
                
        
 lcl|XALc_2806

        
160

	
256

	
S=149 I=35 E=4.287e-11

	
putative membrane-bound metalloendopeptidase protein

     	

   





    

        
            
                X.species
            
                
        
YP_365742.1 lcl|XCV4011

        
160

	
253

	
S=136 I=35 E=1.66911e-09

	
membrane-bound metalloendopeptidase

     	

   





    

        
            
                X.species
            
                
        
NP_644199.1 lcl|XAC3898-XAC3898

        
160

	
253

	
S=136 I=35 E=1.69847e-09

	
hypothetical protein

     	

   





    

        
            
                X.species
            
                
        
NP_639182.1 lcl|XCC3842

        
160

	
253

	
S=135 I=35 E=1.98708e-09

	
hypothetical protein

     	

   





    

        
            
                X.species
            
                
        
 lcl|XALc_0382

        
160

	
252

	
S=117 I=33 E=3.4359e-07

	
hypothetical membrane-bound metalloendopeptidase protein

     	

   





    

        
            
                X.species
            
                
        
YP_364291.1 lcl|XCV2560

        
161

	
258

	
S=110 I=32 E=2.50821e-06

	
metalloendopeptidase precursor

     	

   





    

        
            
                X.species
            
                
        
NP_642677.1 lcl|XAC2361-XAC2361

        
161

	
258

	
S=109 I=32 E=2.83383e-06

	
peptidase

     	

   





    

        Iprscan
        
	[G3DSA:3.10.350.10]
	
56

	
105

	
	
-

    





    

        Iprscan
        IPR002886
	[PTHR21666:SF7]
	
61

	
253

	
	
Peptidase M23B

    





    

        Iprscan
        
	[PTHR21666]
	
61

	
253

	
	
-

    





    

        Iprscan
        IPR016047
	[PF01551]
	
159

	
252

	
	
Peptidase M23

    





    

        Iprscan
        IPR018392
	[PF01476]
	
61

	
101

	
	
Peptidoglycan-binding lysin domain

    





    

        Iprscan
        IPR002482
	[SM00257]
	
59

	
103

	
	
Peptidoglycan-binding Lysin subgroup

    





    

        Iprscan
        
	[PS51257]
	
1

	
25

	
	
-

    





    

        Iprscan
        
	[seg]
	
30

	
58

	
	
-

    





    

        Iprscan
        
	[seg]
	
104

	
119

	
	
-

    





    

        Iprscan
        
	[seg]
	
121

	
134

	
	
-

    





    

        Iprscan
        
	[seg]
	
146

	
158

	
	
-

    





    

        Iprscan
        
	[SignalP-NN(euk)]
	
1

	
27

	
	
-

    





    

        Iprscan
        
	[tmhmm]
	
12

	
31

	
	
-

    





    

        Iprscan
        IPR011055
	[SSF51261]
	
56

	
256

	
	
Duplicated hybrid motif

    




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Suggest an annotation


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ID


DE


EC


GO


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CL

 
  Your email  
 
  Validation code (copy this one rU75X30r)  
 
     



Show or not Access unfiltered results






    

       
            
                pubmed
            
        
	    
            
Set of Uniprot with relevant PubMed cross-references ncbi-blastp

        		
 	    
            78 hits
        
    

    

        
            
                swiss-prot
            
        
	    
            
Swiss-Prot ncbi-blastp

        		
 	    
            20 hits
        
    

    
    
    

        
            
                XFF4834R
            
        
    	
            
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp

        		        
        
            5 hits
        
    

        
    

        
            
                hamap
            
        
	
            
HAMAP scan

        		        
        
            0 hits
        
    

    
    

	    
            
                Interpro Scan
            
            
	        
                
IprScan

            		        
            
                14 hits
            
    








Show or not Miscellaneous analyses




    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetLocalBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBiUcv6h/XFF4834R_chr27830.xml_fasta", "https://iant.toulouse.inra.fr/bacteria/annotation/web/img/XFF4834R.png"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    
    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetNcbiBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBiUcv6h/XFF4834R_chr27830.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetUniprotBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBiUcv6h/XFF4834R_chr27830.xml_fasta"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetKeggBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBiUcv6h/XFF4834R_chr27830.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    

    






nagZ XFF4834R_chr31670




    

         
             
            XFF4834R_chr31660
            
XFF4834R_chr31660
            
        		


       
           
	   Cluster
	   
DrawMap
	   
        		
	
        
            XML file
        	


	    FASTA file
        		
	
	
             
            Extract
Sequence
            
        		
	
	
             
            Codon
Usage
            
        		
    
    
            
            Framed
            
     
  	



	
            OrthoMCL
            
    
  	
    
    
    

     


	
             
            XFF4834R_chr31680
            
XFF4834R_chr31680
            
        		

    





    

        ID
        nagZ
    

    

        AC
        XFF4834R_chr31670
    

    

        LT
        XFF4834R_chr31670
    

    

        OR
        XFF4834R_chr from 3635869 to 3636873 on strand -
    

   

        DE
        probable beta-N-acetylglucosaminidase
  

   

        IP
        Glycoside hydrolase, catalytic core
  
  
  
  

        CL
        1.7.34 Peptidoglycan (murein) turnover, recycling	GO:0000270 
    

  

        EC
        
    

    
    

        GO
        
            InterPro
Biological Process: carbohydrate metabolic process (GO:0005975)
hydrolyzing O-glycosyl compounds (GO:0004553)


            Curated

        		
    


  

        PM
        
    

  

        AN
        peptidoglycan recycling
    

  

        CC
        COG: [G] Carbohydrate transport and metabolism; 
    

    

        CC
        MODEL: XFF4834R 
  
    
  

        CC
        STATUS: curated by elauber (20100719)
  

  
  


    

        MW
        34954.3 Da
    


    

        SQ
        334 aa
    

    

         
        
........10........20........30........40........50
         |         |         |         |         |
MLLIGVAGTELSAQERDWLQHDAVAGVVLFKRNFASRTQVAELSAAIRAA
APRPVLICVDQEGGRVQRFREGFSALAPLQSFGAQYAQDPEAALAAACAH
AQLMASEVRASGVDLSFAPVVDLGRGNRAIGDRAFSDDPQIVATFTRAYV
QALHGAGMAATLKHFPGHGTVLEDTHVDHASDPRPLEVLQAEDLVPFVAG
IEAGADAVMMAHVVYPQVAPEPAGYSQRWIEQILRGQMGFRGVVFSDDIG
MAASFSAGGVAGRVHAHLDAGCDVVLVCQPELVVESLQAVQGRSLNTAAL
IGLIGRGALGWDGLLAGTDASFTTPLSAHFGTTA

    






    

        
            
                XFF4834R
            
                
        
XFF4834R_chr37580 lcl|bglX-XFF4834R_chr37580

        
107

	
247

	
S=133 I=32 E=1.49561e-09

	
beta-D-glucoside glucohydrolase, periplasmic

     	

   





    

        
            
                XFF4834R
            
                
        
XFF4834R_chr41060 lcl|XFF4834R_chr_4767686_4770391_f2_XFF4834R-XFF4834R_chr41060

        
117

	
247

	
S=95 I=32 E=5.37012e-05

	

     	

   





    

        
            
                X.species
            
                
        
NP_641669.1 lcl|nagZ-XAC1334

        
1

	
334

	
S=1441 I=89 E=1.57842e-167

	
beta-hexosaminidase

     	

   





    

        
            
                X.species
            
                
        
YP_363117.1 lcl|XCV1386

        
1

	
334

	
S=1424 I=88 E=1.66042e-165

	
beta-hexosaminidase

     	

   





    

        
            
                X.species
            
                
        
NP_636657.1 lcl|nagZ-XCC1283

        
1

	
334

	
S=1313 I=82 E=4.80001e-152

	
beta-hexosaminidase

     	

   





    

        
            
                X.species
            
                
        
 lcl|nagZ-XALc_2534

        
1

	
323

	
S=1099 I=73 E=4.61572e-126

	
probable beta-n-acetylhexosaminidase protein

     	

   





    

        
            
                X.species
            
                
        
YP_365719.1 lcl|bglX-XCV3988

        
107

	
247

	
S=133 I=32 E=5.20558e-09

	
beta-glucosidase

     	

   





    

        
            
                X.species
            
                
        
NP_644175.1 lcl|bglX-XAC3869

        
107

	
247

	
S=129 I=32 E=1.46914e-08

	
beta-glucosidase

     	

   





    

        
            
                X.species
            
                
        
 lcl|bglX-XALc_0419

        
107

	
247

	
S=123 I=32 E=7.70015e-08

	
probable beta-glucosidase protein

     	

   





    

        
            
                X.species
            
                
        
NP_639159.1 lcl|bglX-XCC3814

        
107

	
247

	
S=122 I=32 E=1.18042e-07

	
beta-glucosidase

     	

   





    

        
            
                X.species
            
                
        
NP_636624.1 lcl|bglX-XCC1250

        
112

	
247

	
S=105 I=30 E=1.24174e-05

	
beta-glucosidase

     	

   





    

        
            
                X.species
            
                
        
NP_644530.1 lcl|XAC4231-XAC4231

        
117

	
247

	
S=104 I=33 E=1.61297e-05

	
glucan 1,4-beta-glucosidase

     	

   





    

        
            
                X.species
            
                
        
YP_366068.1 lcl|XCV4337

        
117

	
247

	
S=103 I=32 E=2.28606e-05

	
beta-glucosidase precursor

     	

   





    

        
                pubmed
        
        

        
2

	
279

	
S=606 I=46 E=1.07753e-64

	
Beta-hexosaminidase EC=3.2.1.52 ; Cell cycle division shape wall biogenesis/degradation Cytoplasm Glycosidase Hydrolase Peptidoglycan synthesis

	
Pubmed 8969206

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
2

	
291

	
S=605 I=45 E=1.42428e-64

	
Putative beta-hexosaminidase ; Glycosidase Hydrolase

	
Pubmed 20091296

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
6

	
290

	
S=552 I=39 E=3.79573e-58

	
Beta-N-acetylhexosaminidase. Glycosyl Hydrolase family 3 EC=3.2.1.52 Putative N-acetyl-glucosaminidase ; Glycosidase

	
Pubmed 12754233

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
2

	
279

	
S=537 I=44 E=2.07635e-56

	
N-acetylhexosaminidase EC=3.2.1.52 ; Glycosidase Hydrolase

	
Pubmed 18671744

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
2

	
292

	
S=432 I=33 E=1.20673e-43

	
Putative hydrolase ; Glycosidase

	
Pubmed 14993314

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
1

	
334

	
S=1441 I=89 E=4.48726e-166

	
Beta-hexosaminidase EC=3.2.1.52 ; Cell cycle division shape wall biogenesis/degradation Cytoplasm Glycosidase Hydrolase Peptidoglycan synthesis

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
1

	
334

	
S=1425 I=88 E=4.40233e-164

	
Beta-hexosaminidase EC=3.2.1.52 ; Cell cycle division shape wall biogenesis/degradation Cytoplasm Glycosidase Hydrolase Peptidoglycan synthesis

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
1

	
334

	
S=1417 I=87 E=3.29887e-163

	
Beta-hexosaminidase EC=3.2.1.52 ; Cell cycle division shape wall biogenesis/degradation Cytoplasm Glycosidase Hydrolase Peptidoglycan synthesis

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
1

	
334

	
S=1410 I=87 E=2.30545e-162

	
Beta-hexosaminidase EC=3.2.1.52 ; Cell cycle division shape wall biogenesis/degradation Cytoplasm Glycosidase Hydrolase Peptidoglycan synthesis

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
1

	
334

	
S=1313 I=82 E=1.36458e-150

	
Beta-hexosaminidase EC=3.2.1.52 ; Cell cycle division shape wall biogenesis/degradation Cytoplasm Glycosidase Hydrolase Peptidoglycan synthesis

	

    

    

         
        
prodomImg

    





    

        Iprscan
        IPR001764
	[G3DSA:3.20.20.300]
	
1

	
278

	
	
Glycoside hydrolase, family 3, N-terminal

    





    

        Iprscan
        
	[MF_00364]
	
1

	
334

	
	
-

    





    

        Iprscan
        IPR001764
	[PF00933]
	
54

	
276

	
	
Glycoside hydrolase, family 3, N-terminal

    





    

        Iprscan
        IPR019800
	[PS00775]
	
233

	
250

	
	
Glycoside hydrolase, family 3, active site

    





    

        Iprscan
        
	[seg]
	
84

	
105

	
	
-

    





    

        Iprscan
        
	[seg]
	
298

	
310

	
	
-

    





    

        
            
                
            
                
        
PD891609

        
109

	
291

	
S=231 I=31 E=1.61793e-20

    	
    





    

        
            
                
            
                
        
PD001132

        
33

	
276

	
S=203 I=33 E=4.32262e-17

    	
    





    

        
            
                
            
                
        
PD232689

        
209

	
253

	
S=138 I=50 E=3.67019e-09

    	
    





    

        
            
                
            
                
        
PD397290

        
106

	
150

	
S=117 I=47 E=1.07079e-06

    	
    





    

        
            
                
            
                
        
PD880206

        
153

	
210

	
S=116 I=48 E=1.42777e-06

    	
    





    

        
            
                
            
                
        
PDA4K4A3

        
2

	
70

	
S=105 I=41 E=3.26598e-05

    	
    





    

        
            
                
            
                
        
PD928527

        
1

	
25

	
S=104 I=88 E=4.02614e-05

    	
    





    

        
            
                
            
                
        
PDA8V938

        
206

	
279

	
S=103 I=36 E=5.96049e-05

    	
    





    

        Iprscan
        IPR017853
	[SSF51445]
	
1

	
278

	
	
Glycoside hydrolase, catalytic core

    




Show or not Suggestions
Suggest an annotation


Move your mouse over each field to get more informations


ID


DE


EC


GO


PM



CC


CL

 
  Your email  
 
  Validation code (copy this one SmgUrwg6)  
 
     



Show or not Access unfiltered results






    

       
            
                pubmed
            
        
	    
            
Set of Uniprot with relevant PubMed cross-references ncbi-blastp

        		
 	    
            42 hits
        
    

    

        
            
                swiss-prot
            
        
	    
            
Swiss-Prot ncbi-blastp

        		
 	    
            135 hits
        
    

    
    
    

        
            
                XFF4834R
            
        
    	
            
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp

        		        
        
            2 hits
        
    

        
    

        
            
                hamap
            
        
	
            
HAMAP scan

        		        
        
            0 hits
        
    

    
    

	    
            
                Interpro Scan
            
            
	        
                
IprScan

            		        
            
                7 hits
            
    








Show or not Miscellaneous analyses




    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetLocalBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBiUcv6h/XFF4834R_chr31670.xml_fasta", "https://iant.toulouse.inra.fr/bacteria/annotation/web/img/XFF4834R.png"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    
    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetNcbiBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBiUcv6h/XFF4834R_chr31670.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetUniprotBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBiUcv6h/XFF4834R_chr31670.xml_fasta"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetKeggBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBiUcv6h/XFF4834R_chr31670.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    

    






slt XFF4834R_chr34560




    

         
             
            XFF4834R_chr34550
            
XFF4834R_chr34550
            
        		


       
           
	   Cluster
	   
DrawMap
	   
        		
	
        
            XML file
        	


	    FASTA file
        		
	
	
             
            Extract
Sequence
            
        		
	
	
             
            Codon
Usage
            
        		
    
    
            
            Framed
            
     
  	



	
            OrthoMCL
            
    
  	
    
    
    

     


	
             
            XFF4834R_chr34570
            
XFF4834R_chr34570
            
        		

    





    

        ID
        slt
    

    

        AC
        XFF4834R_chr34560
    

    

        LT
        XFF4834R_chr34560
    

    

        OR
        XFF4834R_chr from 4009150 to 4011123 on strand +
    

   

        DE
        putative soluble lytic murein transglycosylase
  

   

        IP
        Lytic transglycosylase-like, catalytic; Lytic transglycosylase, superhelical U-shaped and linker domain
  
  
  
  

        CL
        1.7.34 Peptidoglycan (murein) turnover, recycling	GO:0000270 
    

  

        EC
        
    

    
    

        GO
        
            InterPro
Cellular Component: periplasmic space (GO:0042597)
hydrolyzing O-glycosyl compounds (GO:0004553)


            Curated

        		
    


  

        PM
        
    

  

        AN
        Also CL 1.2.3 Proteins/peptides/glycopeptides (CL 1.6.7 Peptidoglycan (murein) is for biosynthesis) 
    

  

        CC
        COG: [M] Cell wall/membrane/envelope biogenesis; 
    

    

        CC
        MODEL: XFF4834R 
  
    
  

        CC
        STATUS: curated by irobene (20100811)
  

  
  


    

        MW
        72142.7 Da
    


    

        SQ
        657 aa
    

    

         
        
........10........20........30........40........50
         |         |         |         |         |
MTYAPRLATVFIGLLCLGSTALHAQTLDPQLTAMRDAIAAAERGQTDAGQ
LAALSRHPLYGWLEFAALKRTIDTVSNAQAQAFLQRYAGQPVAESFRSTW
LPAVARRQDWNTLLANWKSTDNLGLRCAQLTARLATGKADAQWSRDALTL
WRNGKALPDACDAVVAGLESRGELTPALRWERVDAAADAQQPAVMRTAAR
GLPAADLALATDYAAFLDKVHPRALGWPKTERSRRIAVDGLSKLAKSDPD
AAEQQLPQLASALGFSEAQRGQVLYQIALWTVASYLPDSARRLNAVPDAS
YDERLHEWRAREAMSRGDWPAALAAIRKMPASQRSDSRWQYFEARLAEKT
GAAAAAQPLYRAAAQSPTFHGFLAADRLQQPYRLCPWEPNDSAQAKAAVA
RDPALVRAIALFQIDRPGWAVAEWNDAATRFDDTQRRLAVEVASDNGWFD
RAVFALGKQPDEQRLYALRFPLHHDDTIRREAAKNAIDPAWVAGEIRAES
IFNPRARSPANAMGLMQVLPGTGAAVAKGIALPGYAGASSLYEPDTNIAI
GTAYLRQLLNTYGLPYLTIAAYNAGPGPTGRWQSQRPNFEPDFWIETISY
KETREYVARVLAFSVIYDWRLNGDMLPLSDRLMGKLVDKRLKPVCTPGQA
ANNAAQD

    






    

        
            
                XFF4834R
            
                
        
XFF4834R_chr24420 lcl|XFF4834R_chr26690099_2818082_r2_XFF4834R-XFF4834R_chr24420

        
449

	
598

	
S=126 I=31 E=2.1353e-08

	

     	

   





    

        
            
                X.species
            
                
        
NP_643868.1 lcl|slt-XAC3561

        
1

	
657

	
S=3140 I=92 E=0

	
soluble lytic murein transglycosylase

     	

   





    

        
            
                X.species
            
                
        
YP_365417.1 lcl|slt-XCV3686

        
1

	
657

	
S=3127 I=92 E=0

	
soluble lytic murein transglycosylase precursor

     	

   





    

        
            
                X.species
            
                
        
NP_638752.1 lcl|slt-XCC3406

        
1

	
657

	
S=2935 I=86 E=0

	
soluble lytic murein transglycosylase

     	

   





    

        
            
                X.species
            
                
        
 lcl|slt-XALc_0843

        
18

	
645

	
S=2264 I=69 E=0

	
probable soluble lytic murein transglycosylase precursor protein

     	

   





    

        
            
                X.species
            
                
        
NP_642773.1 lcl|yjbJ-XAC2458

        
449

	
598

	
S=124 I=32 E=1.20972e-07

	
soluble lytic murein transglycosylase

     	

   





    

        
            
                X.species
            
                
        
YP_364366.1 lcl|XCV2635

        
449

	
598

	
S=124 I=32 E=1.31993e-07

	
putative soluble lytic murein transglycosylase precursor

     	

   





    

        
            
                X.species
            
                
        
NP_637679.1 lcl|yjbJ-XCC2325

        
449

	
598

	
S=120 I=31 E=3.82389e-07

	
soluble lytic murein transglycosylase

     	

   





    

        
            
                X.species
            
                
        
 lcl|XALc_1263

        
474

	
598

	
S=109 I=32 E=9.13677e-06

	
hypothetical soluble lytic murein transglycosylase precursor protein

     	

   





    

        
            
                X.species
            
                
        
 lcl|XALr_3249

        
463

	
594

	
S=106 I=31 E=2.32246e-05

	
probable lytic transglycosylase protein

     	

   





    

        
                pubmed
        
        

        
7

	
630

	
S=559 I=30 E=1.01522e-58

	
Putative soluble lytic transglycosylase

	
Pubmed 20091296

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
6

	
624

	
S=478 I=27 E=6.86002e-49

	
Soluble lytic murein transglycosylase EC=4.2.2.n1 ; Cell wall biogenesis/degradation Disulfide bond Lyase Periplasm Signal

	
Pubmed 1938883

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
18

	
632

	
S=447 I=28 E=4.90894e-45

	
Soluble lytic murein transglycosylase

	
Pubmed 15305924

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
482

	
613

	
S=156 I=36 E=6.87586e-10

	
Membrane-bound lytic murein transglycosylase C EC=3.2.1.- ; Glycosidase Hydrolase

	
Pubmed 18459973

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
487

	
581

	
S=155 I=37 E=1.00034e-09

	
Putative lytic transglycosylase ; Signal

	
Pubmed 12820036

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
6

	
624

	
S=478 I=27 E=4.67039e-49

	
Soluble lytic murein transglycosylase EC=4.2.2.n1 ; Cell wall biogenesis/degradation Disulfide bond Lyase Periplasm Signal

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
6

	
624

	
S=478 I=27 E=4.67039e-49

	
Soluble lytic murein transglycosylase EC=4.2.2.n1 ; Cell wall biogenesis/degradation Disulfide bond Lyase Periplasm Signal

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
6

	
617

	
S=465 I=28 E=1.71072e-47

	
Soluble lytic murein transglycosylase EC=4.2.2.n1 ; Cell wall biogenesis/degradation Disulfide bond Lyase Periplasm Signal

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
329

	
617

	
S=260 I=30 E=1.40729e-22

	
Putative soluble lytic murein transglycosylase EC=4.2.2.n1 ; Cell wall biogenesis/degradation Lyase Periplasm Signal

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
475

	
599

	
S=176 I=36 E=1.91016e-12

	
Putative murein lytic transglycosylase yjbJ EC=4.-.-.- ; Lyase

	

    

    

         
        
prodomImg

    





    

        Iprscan
        IPR008939
	[G3DSA:1.25.20.10]
	
25

	
381

	
	
Lytic transglycosylase, superhelical U-shaped

    





    

        Iprscan
        
	[G3DSA:1.10.530.10]
	
467

	
637

	
	
-

    





    

        Iprscan
        
	[PTHR21666:SF10]
	
462

	
580

	
	
-

    





    

        Iprscan
        
	[PTHR21666]
	
462

	
580

	
	
-

    





    

        Iprscan
        IPR008258
	[PF01464]
	
478

	
589

	
	
Lytic transglycosylase-like, catalytic

    





    

        Iprscan
        
	[seg]
	
183

	
194

	
	
-

    





    

        Iprscan
        
	[seg]
	
204

	
218

	
	
-

    





    

        Iprscan
        
	[seg]
	
352

	
364

	
	
-

    





    

        Iprscan
        
	[SignalP-NN(euk)]
	
1

	
24

	
	
-

    





    

        Iprscan
        
	[tmhmm]
	
7

	
24

	
	
-

    





    

        
            
                
            
                
        
PD042587

        
35

	
471

	
S=531 I=34 E=9.12206e-57

    	
    





    

        
            
                
            
                
        
PD612032

        
1

	
51

	
S=256 I=98 E=2.17839e-23

    	
    





    

        
            
                
            
                
        
PDA1S681

        
618

	
657

	
S=211 I=100 E=5.32514e-18

    	
    





    

        
            
                
            
                
        
PD883389

        
24

	
145

	
S=133 I=32 E=1.76037e-08

    	
    





    

        
            
                
            
                
        
PDA1S679

        
472

	
498

	
S=130 I=93 E=3.72601e-08

    	
    





    

        
            
                
            
                
        
PD580287

        
499

	
584

	
S=118 I=38 E=1.21856e-06

    	
    





    

        
            
                
            
                
        
PD695641

        
240

	
345

	
S=116 I=33 E=2.09223e-06

    	
    





    

        
            
                
            
                
        
PDA3A7A9

        
51

	
136

	
S=112 I=28 E=5.85352e-06

    	
    





    

        
            
                
            
                
        
PD269290

        
486

	
522

	
S=104 I=57 E=5.4546e-05

    	
    





    

        
            
                
            
                
        
PDA3Y1C7

        
582

	
634

	
S=104 I=36 E=5.50236e-05

    	
    





    

        Iprscan
        IPR016026
	[SSF48435]
	
25

	
471

	
	
Lytic transglycosylase, superhelical U-shaped and linker domain

    





    

        Iprscan
        
	[SSF53955]
	
472

	
637

	
	
-

    




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                pubmed
            
        
	    
            
Set of Uniprot with relevant PubMed cross-references ncbi-blastp

        		
 	    
            18 hits
        
    

    

        
            
                swiss-prot
            
        
	    
            
Swiss-Prot ncbi-blastp

        		
 	    
            75 hits
        
    

    
    
    

        
            
                XFF4834R
            
        
    	
            
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp

        		        
        
            1 hits
        
    

        
    

        
            
                hamap
            
        
	
            
HAMAP scan

        		        
        
            0 hits
        
    

    
    

	    
            
                Interpro Scan
            
            
	        
                
IprScan

            		        
            
                12 hits
            
    








Show or not Miscellaneous analyses




    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetLocalBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBiUcv6h/XFF4834R_chr34560.xml_fasta", "https://iant.toulouse.inra.fr/bacteria/annotation/web/img/XFF4834R.png"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    
    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetNcbiBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBiUcv6h/XFF4834R_chr34560.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetUniprotBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBiUcv6h/XFF4834R_chr34560.xml_fasta"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetKeggBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBiUcv6h/XFF4834R_chr34560.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    

    






ampD XFF4834R_chr37490




    

         
             
            XFF4834R_chr_4592
            
XFF4834R_chr_4592
            
        		


       
           
	   Cluster
	   
DrawMap
	   
        		
	
        
            XML file
        	


	    FASTA file
        		
	
	
             
            Extract
Sequence
            
        		
	
	
             
            Codon
Usage
            
        		
    
    
            
            Framed
            
     
  	



	
            OrthoMCL
            
    
  	
    
    
    

     


	
             
            XFF4834R_chr37500
            
XFF4834R_chr37500
            
        		

    





    

        ID
        ampD
    

    

        AC
        XFF4834R_chr37490
    

    

        LT
        XFF4834R_chr37490
    

    

        OR
        XFF4834R_chr from 4334444 to 4335250 on strand -
    

   

        DE
        probable N-acetylmuramoyl-L-alanine amidase
  

   

        IP
        N-acetylmuramoyl-L-alanine amidase, family 2
  
  
  
  

        CL
        1.7.34 Peptidoglycan (murein) turnover, recycling	GO:0000270 
    

  

        EC
        
    

    
    

        GO
        
            InterPro
Biological Process: peptidoglycan catabolic process (GO:0009253)
Molecular Function: N-acetylmuramoyl-L-alanine amidase activity (GO:0008745)


            Curated

        		
    


  

        PM
        
    

  

        AN
        
    

  

        CC
        COG: [V] Defense mechanisms; 
    

    

        CC
        MODEL: XFF4834R 
  
    
  

        CC
        STATUS: curated by poussier (20100712)
  

  
  


    

        MW
        29157.2 Da
    


    

        SQ
        268 aa
    

    

         
        
........10........20........30........40........50
         |         |         |         |         |
MLPSFSLSSSAWLRTAVCLAALSLGACAHAPQRNPLAQWVPSPNYDTRRP
ILIVLHFTDQHSVRQSLSTLRGRNSGGRVSAHYLIGEDGQRYQLVSDGLR
AWHGGAGRWGTITDINSASIGIELDNDGSEPFAPAQIDSLLVLLDDLCQR
LRIPRTQIVGHEDVAPTRKNDPGPLFPWRRLADAGFGRWPAADAPAAPEG
FDPWQALALIGYSIDDPAATLQAFHHHYRGNSATTLDAEDLRILSAMTNH
ARLSGSRPALEPTEGDDH

    






    

        
            
                X.species
            
                
        
YP_365709.1 lcl|ampD-XCV3978

        
1

	
268

	
S=1240 I=93 E=3.10745e-143

	
N-acetylmuramoyl-L-alanine amidase

     	

   





    

        
            
                X.species
            
                
        
NP_644166.1 lcl|XAC3860-XAC3860

        
1

	
267

	
S=1205 I=91 E=5.22569e-139

	
N-acetylmuramoyl-L-alanine amidase

     	

   





    

        
            
                X.species
            
                
        
NP_639150.1 lcl|XCC3805

        
12

	
248

	
S=958 I=84 E=4.02742e-109

	
N-acetylmuramoyl-L-alanine amidase

     	

   





    

        
            
                X.species
            
                
        
 lcl|ampD-XALc_0423

        
25

	
249

	
S=817 I=73 E=4.72707e-92

	
probable n-acetylmuramoyl-l-alanine amidase precursor protein

     	

   





    

        
                pubmed
        
        

        
40

	
250

	
S=226 I=33 E=8.32348e-19

	
BimB N-acetylmuramoyl-L-alanine amidase domain protein

	
Pubmed 16267310

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
78

	
187

	
S=201 I=41 E=9.71346e-16

	
N-acetylmuramyl-L-alanine amidase

	
Pubmed 9390420

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
75

	
195

	
S=180 I=40 E=3.01227e-13

	
N-acetyl-anhydromuramyl-L-alanine amidase

	
Pubmed 14766547

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
78

	
181

	
S=175 I=38 E=1.20489e-12

	
N-acetyl-anhydromuramyl-L-alanine amidase variant 3

	
Pubmed 11557489

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
78

	
181

	
S=175 I=38 E=1.36132e-12

	
N-acetyl-anhydromuramyl-L-alanine amidase

	
Pubmed 11557489

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
49

	
192

	
S=238 I=39 E=2.17726e-20

	
N-acetylmuramoyl-L-alanine amidase AmiD EC=3.5.1.28 ; Cell membrane outer wall biogenesis/degradation Hydrolase Lipoprotein Metal-binding Palmita

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
78

	
180

	
S=181 I=38 E=1.66639e-13

	
1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD EC=3.5.1.28 ; Cell wall biogenesis/degradation Cytoplasm Hydrolase Metal-binding Zinc

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
79

	
181

	
S=171 I=38 E=2.90904e-12

	
1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD EC=3.5.1.28 ; Cell wall biogenesis/degradation Cytoplasm Hydrolase Metal-binding Zinc

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
78

	
181

	
S=169 I=38 E=4.57771e-12

	
1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD EC=3.5.1.28 ; Cell wall biogenesis/degradation Cytoplasm Hydrolase Metal-binding Zinc

	

    

    

         
        
prodomImg