7 hits
XFF4834R_chr02810 | XFF4834R_chr02950010_0329179_r3_XFF4834R-XFF4834R_chr02810 | XFF4834R_chr02810 | putative nucleoside hydrolase |
XFF4834R_chr16050 | XFF4834R_chr17270692_1853931_f1_XFF4834R-XFF4834R_chr16050 | XFF4834R_chr16050 | putative thiol-disulfide isomerase et thioredoxin ; glutaredoxin protein |
XFF4834R_chr18940 | XFF4834R_chr20390652_2175221_f3_XFF4834R-XFF4834R_chr18940 | XFF4834R_chr18940 | probable dCTP deaminase activity protein |
XFF4834R_chr38010 | dut | XFF4834R_chr38010 | probable deoxyuridinetriphosphatase |
XFF4834R_chr38800 | tmk | XFF4834R_chr38800 | probable thymidylate kinase |
XFF4834R_chr39400 | nrdB | XFF4834R_chr39400 | probable ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like |
XFF4834R_chr39410 | nrdA | XFF4834R_chr39410 | probable secreted ribonucleoside-diphosphate reductase 2, alpha subunit |
![]() XFF4834R_chr02800 |
![]() DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
![]() |
![]() |
![]() XFF4834R_chr02820 |
ID | XFF4834R_chr02950010_0329179_r3_XFF4834R-XFF4834R_chr02810 |
AC | XFF4834R_chr02810 |
LT | XFF4834R_chr02810 |
OR | XFF4834R_chr from 328010 to 329179 on strand - |
DE | putative nucleoside hydrolase |
IP | Inosine/uridine-preferring nucleoside hydrolase |
CL | 1.7.15 2'-deoxyribonucleotide/ribonucleoside metabolism GO:0009265 |
EC | |
GO |
InterPro Curated
|
PM | |
AN | il faut faire un interproscan pour voir le domain(le meme que les autres xantho) |
CC | COG: [F] Nucleotide transport and metabolism; |
CC | MODEL: XFF4834R |
CC | STATUS: curated by brin (20100903) |
MW | 42548 Da |
SQ | 389 aa |
........10........20........30........40........50 |
![]() |
XFF4834R_chr11370 XFF4834R_chr11860685_1270683_f1_XFF4834R-XFF4834R_chr11370 |
159 |
280 |
S=131 I=37 E=2.54265e-09 |
![]() |
XFF4834R_chr12610 rihA-XFF4834R_chr12610 |
131 |
250 |
S=113 I=38 E=4.28303e-07 |
ribonucleoside hydrolase 1 |
![]() |
NP_640663.1 XAC0307-XAC0307 |
1 |
389 |
S=1959 I=97 E=0 |
nucleoside hydrolase |
![]() |
YP_362047.1 XCV0316 |
1 |
389 |
S=1896 I=94 E=0 |
putative nucleoside hydrolase |
![]() |
NP_635688.1 XCC0293 |
19 |
385 |
S=1732 I=91 E=0 |
nucleoside hydrolase |
![]() |
NP_641480.1 XAC1144-XAC1144 |
159 |
271 |
S=133 I=39 E=5.50619e-09 |
inosine-uridine preferring nucleoside hydrolase |
![]() |
XALc_0644 XALc_0644 |
154 |
271 |
S=129 I=41 E=1.72537e-08 |
putative inosine-uridine preferring nucleoside hydrolase precursor protein |
![]() |
YP_362893.1 XCV1162 |
162 |
271 |
S=127 I=39 E=3.06756e-08 |
putative inosine-uridine preferring nucleoside hydrolase |
![]() |
NP_636413.1 XCC1038 |
159 |
280 |
S=119 I=34 E=3.065e-07 |
inosine-uridine preferring nucleoside hydrolase |
![]() |
NP_643697.1 XAC3390-XAC3390 |
131 |
250 |
S=109 I=38 E=4.77726e-06 |
inosine-uridine preferring nucleoside hydrolase |
![]() |
YP_365238.1 iunH-XCV3507 |
132 |
248 |
S=104 I=38 E=2.06686e-05 |
inosine-uridine preferring nucleoside hydrolase |
![]() |
27 |
269 |
S=180 I=30 E=4.70652e-13 |
Putative inosine-uridine preferring nucleoside hydrolase EC=3.2.2.1 ; Glycosidase |
Pubmed 16204499 |
|
![]() |
128 |
281 |
S=159 I=31 E=1.9125e-10 |
Nucleoside hydrolase |
Pubmed 16707707 |
|
![]() |
29 |
282 |
S=143 I=28 E=1.37085e-08 |
Inosine-uridine preferring nucleoside hydrolase EC=3.2.2.- ; Calcium Glycosidase Metal-binding Nucleotide metabolism |
||
![]() |
26 |
368 |
S=140 I=28 E=3.97139e-08 |
Ribonucleoside hydrolase 1 |
Pubmed 16549679 |
|
![]() |
156 |
259 |
S=132 I=36 E=3.60519e-07 |
Putative purine hydrolase Salivary purine nucleosidase |
||
![]() |
23 |
369 |
S=327 I=28 E=5.62838e-31 |
Uncharacterized protein C800.11 ; Endoplasmic reticulum Glycosidase Hydrolase Signal |
![]() |
136 |
276 |
S=188 I=39 E=3.84755e-14 |
Probable uridine nucleosidase 1 EC=3.2.2.3 ; Cytoplasm Glycosidase Hydrolase |
![]() |
26 |
287 |
S=178 I=26 E=6.95511e-13 |
Probable uridine nucleosidase 2 EC=3.2.2.3 ; Alternative splicing Cytoplasm Glycosidase Hydrolase |
![]() |
136 |
277 |
S=177 I=36 E=7.52285e-13 |
Uridine nucleosidase 1 EC=3.2.2.3 ; Cytoplasm Glycosidase Hydrolase |
![]() |
45 |
367 |
S=160 I=26 E=9.33942e-11 |
Uncharacterized protein C1683.06c ; Cytoplasm Glycosidase Hydrolase Nucleus |
![]() |
IPR001910 [G3DSA:3.90.245.10] | 15 |
370 |
Inosine/uridine-preferring nucleoside hydrolase |
![]() |
IPR001910 [PTHR12304] | 27 |
371 |
Inosine/uridine-preferring nucleoside hydrolase |
![]() |
IPR001910 [PF01156] | 43 |
368 |
Inosine/uridine-preferring nucleoside hydrolase |
![]() |
[SignalP-NN(euk)] | 1 |
1 |
- |
![]() |
19 |
135 |
S=499 I=81 E=5.13695e-53 |
![]() |
321 |
371 |
S=250 I=94 E=6.85707e-23 |
![]() |
1 |
44 |
S=206 I=89 E=1.5633e-17 |
![]() |
51 |
367 |
S=176 I=28 E=6.57247e-14 |
![]() |
26 |
119 |
S=114 I=29 E=2.41638e-06 |
![]() |
158 |
246 |
S=108 I=36 E=1.10158e-05 |
![]() |
IPR001910 [SSF53590] | 28 |
373 |
Inosine/uridine-preferring nucleoside hydrolase |
Access unfiltered results
![]() |
Set of Uniprot with relevant PubMed cross-references ncbi-blastp |
5 hits |
![]() |
Swiss-Prot ncbi-blastp |
8 hits |
![]() |
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp |
2 hits |
![]() |
HAMAP scan |
0 hits |
![]() |
IprScan |
5 hits |
Miscellaneous analyses
![]() XFF4834R_chr16040 |
![]() DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
![]() |
![]() |
![]() XFF4834R_chr16060 |
ID | XFF4834R_chr17270692_1853931_f1_XFF4834R-XFF4834R_chr16050 |
AC | XFF4834R_chr16050 |
LT | XFF4834R_chr16050 |
OR | XFF4834R_chr from 1853692 to 1853931 on strand + |
DE | putative thiol-disulfide isomerase et thioredoxin ; glutaredoxin protein |
IP | Glutaredoxin 2; Thioredoxin-like fold |
CL | 1.7.15 2'-deoxyribonucleotide/ribonucleoside metabolism GO:0009265 |
EC | |
GO |
InterPro Curated |
PM | |
AN | nombreux hits blastx ncbi pour hypoth protein et quelques hits pour isomerase et thioredoxine et glutaredoxine dont 1 chez X albilineans ; 1 dom interpro pour thioredoxine et glutaredoxine sur 73aa MAIS sur 62 % seulement de la seq de X albilineans |
CC | COG: [S] Function unknown; |
CC | MODEL: XFF4834R |
CC | STATUS: curated by bonneau (20100823) |
MW | 9092 Da |
SQ | 79 aa |
........10........20........30........40........50 |
![]() |
YP_364903.1 lcl|XCV3172 |
1 |
79 |
S=386 I=94 E=1.07125e-40 |
hypothetical protein |
![]() |
NP_643344.1 lcl|XAC3035-XAC3035 |
1 |
79 |
S=372 I=96 E=4.83718e-39 |
hypothetical protein |
![]() |
NP_638200.1 lcl|XCC2852 |
1 |
73 |
S=305 I=84 E=7.1758e-31 |
hypothetical protein |
![]() |
1 |
73 |
S=259 I=71 E=2.23918e-25 |
putative thiol-disulfide isomerase and thioredoxin; glutaredoxin protein |
![]() |
IPR012335 [G3DSA:3.40.30.10] | 1 |
73 |
Thioredoxin fold |
![]() |
IPR008554 [PF05768] | 3 |
72 |
Glutaredoxin 2 |
![]() |
1 |
27 |
S=141 I=100 E=1.28389e-09 |
![]() |
32 |
75 |
S=117 I=60 E=1.14345e-06 |
![]() |
IPR012336 [SSF52833] | 2 |
76 |
Thioredoxin-like fold |
Access unfiltered results
![]() |
Set of Uniprot with relevant PubMed cross-references ncbi-blastp |
0 hits |
![]() |
Swiss-Prot ncbi-blastp |
0 hits |
![]() |
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp |
0 hits |
![]() |
HAMAP scan |
0 hits |
![]() |
IprScan |
3 hits |
Miscellaneous analyses
![]() XFF4834R_chr18930 |
![]() DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
![]() |
![]() |
![]() XFF4834R_chr18950 |
ID | XFF4834R_chr20390652_2175221_f3_XFF4834R-XFF4834R_chr18940 |
AC | XFF4834R_chr18940 |
LT | XFF4834R_chr18940 |
OR | XFF4834R_chr from 2174652 to 2175221 on strand + |
DE | probable dCTP deaminase activity protein |
IP | Deoxycytidine triphosphate deaminase |
CL | 1.7.15 2'-deoxyribonucleotide/ribonucleoside metabolism GO:0009265 |
EC | |
GO |
InterPro Biological Process: dUTP biosynthetic process (GO:0006229) Biological Process: dUTP metabolic process (GO:0046080) Molecular Function: hydrolase activity (GO:0016787) Molecular Function: dCTP deaminase activity (GO:0008829) Molecular Function: protein binding (GO:0005515) Curated |
PM | |
AN | chez xav nom de gene dcd mais homologie moyenne(27% sur 80%) chez coli en passant par ecogene, domain hamap disparu voir history |
CC | COG: [F] Nucleotide transport and metabolism; |
CC | MODEL: acur |
CC | STATUS: curated by brin (20100906) |
MW | 21261.9 Da |
SQ | 189 aa |
........10........20........30........40........50 |
![]() |
NP_643049.1 dcd-XAC2740 |
1 |
189 |
S=1015 I=99 E=2.99856e-116 |
deoxycytidine triphosphate deaminase |
![]() |
YP_364623.1 dcd-XCV2892 |
1 |
189 |
S=1014 I=99 E=4.43921e-116 |
deoxycytidine triphosphate deaminase |
![]() |
NP_637918.1 dcd-XCC2570 |
1 |
189 |
S=1006 I=98 E=4.13667e-115 |
deoxycytidine triphosphate deaminase |
![]() |
XALc_0969 dcd-XALc_0969 |
1 |
189 |
S=936 I=91 E=1.27643e-106 |
probable deoxycytidine triphosphate deaminase (dctp deaminase) protein |
![]() |
1 |
188 |
S=718 I=65 E=1.03086e-78 |
Deoxycytidine triphosphate deaminase EC=3.5.4.13 ; Hydrolase Nucleotide metabolism |
Pubmed 18593465 |
|
![]() |
1 |
188 |
S=691 I=65 E=1.84419e-75 |
Deoxycytidine triphosphate deaminase EC=3.5.4.13 ; Hydrolase Nucleotide metabolism |
Pubmed 18713059 |
|
![]() |
1 |
188 |
S=691 I=64 E=2.10186e-75 |
Putative uncharacterized protein |
||
![]() |
1 |
189 |
S=680 I=64 E=4.56289e-74 |
Deoxycytidine triphosphate deaminase EC=3.5.4.13 ; Hydrolase Nucleotide metabolism |
Pubmed 19197347 |
|
![]() |
1 |
187 |
S=665 I=65 E=3.05025e-72 |
Deoxycytidine triphosphate deaminase EC=3.5.4.13 ; Hydrolase Nucleotide metabolism |
Pubmed 18550617 |
|
![]() |
1 |
189 |
S=1015 I=99 E=7.74714e-115 |
Deoxycytidine triphosphate deaminase EC=3.5.4.13 ; Hydrolase Nucleotide metabolism |
![]() |
1 |
189 |
S=1014 I=99 E=1.14692e-114 |
Deoxycytidine triphosphate deaminase EC=3.5.4.13 ; Hydrolase Nucleotide metabolism |
![]() |
1 |
189 |
S=1006 I=98 E=1.06876e-113 |
Deoxycytidine triphosphate deaminase EC=3.5.4.13 ; Hydrolase Nucleotide metabolism |
![]() |
1 |
189 |
S=1006 I=98 E=1.06876e-113 |
Deoxycytidine triphosphate deaminase EC=3.5.4.13 ; Hydrolase Nucleotide metabolism |
![]() |
1 |
189 |
S=1006 I=98 E=1.06876e-113 |
Deoxycytidine triphosphate deaminase EC=3.5.4.13 ; Hydrolase Nucleotide metabolism |
![]() |
[G3DSA:2.70.40.10] | 1 |
188 |
- |
![]() |
IPR011962 [MF_00146] | 1 |
189 |
Deoxycytidine triphosphate deaminase |
![]() |
IPR008180 [PF00692] | 77 |
184 |
DeoxyUTP pyrophosphatase domain |
![]() |
IPR011962 [TIGR02274] | 3 |
189 |
Deoxycytidine triphosphate deaminase |
![]() |
92 |
188 |
S=321 I=61 E=1.85447e-31 |
![]() |
1 |
60 |
S=234 I=61 E=7.88751e-21 |
![]() |
61 |
91 |
S=126 I=81 E=8.00912e-08 |
![]() |
[SSF51283] | 1 |
169 |
- |
Access unfiltered results
Miscellaneous analyses
![]() XFF4834R_chr38000 |
![]() DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
![]() |
![]() |
![]() XFF4834R_chr38020 |
ID | dut |
AC | XFF4834R_chr38010 |
LT | XFF4834R_chr38010 |
OR | XFF4834R_chr from 4390803 to 4391270 on strand - |
DE | probable deoxyuridinetriphosphatase |
IP | DeoxyUTP pyrophosphatase domain |
CL | 1.7.15 2'-deoxyribonucleotide/ribonucleoside metabolism GO:0009265 |
EC | |
GO |
InterPro Biological Process: dUTP metabolic process (GO:0046080) Molecular Function: dUTP diphosphatase activity (GO:0004170) Molecular Function: hydrolase activity (GO:0016787) Curated |
PM | |
AN | signal peptide a verif |
CC | COG: [F] Nucleotide transport and metabolism; |
CC | MODEL: XFF4834R |
CC | STATUS: curated by brin (20100907) |
MW | 16353.7 Da |
SQ | 155 aa |
........10........20........30........40........50 |
![]() |
YP_365757.1 lcl|dut-XCV4026 |
1 |
155 |
S=793 I=100 E=1.96022e-89 |
deoxyuridine 5'-triphosphate nucleotidohydrolase |
![]() |
NP_644214.1 lcl|dut-XAC3913 |
1 |
155 |
S=793 I=100 E=1.96022e-89 |
deoxyuridine 5'-triphosphate nucleotidohydrolase |
![]() |
NP_639198.1 lcl|dut-XCC3858 |
5 |
155 |
S=747 I=96 E=7.5405e-84 |
deoxyuridine 5'-triphosphate nucleotidohydrolase |
![]() |
1 |
155 |
S=671 I=83 E=1.06071e-74 |
probable deoxyuridine 5'-triphosphate nucleotidohydrolase (dutp pyrophosphatase) protein |
![]() |
6 |
153 |
S=490 I=59 E=3.05972e-51 |
Deoxyuridine 5'-triphosphate nucleotidohydrolase EC=3.6.1.23 ; Nucleotide metabolism |
||
![]() |
17 |
155 |
S=405 I=52 E=6.70853e-41 |
Deoxyuridine 5'-triphosphate nucleotidohydrolase EC=3.6.1.23 ; Nucleotide metabolism |
Pubmed 10988064 |
|
![]() |
8 |
154 |
S=310 I=48 E=1.99406e-29 |
Deoxyuridine 5'-triphosphate nucleotidohydrolase EC=3.6.1.23 ; Nucleotide metabolism |
Pubmed 17916642 |
|
![]() |
8 |
155 |
S=306 I=45 E=5.38765e-29 |
Deoxyuridine 5'-triphosphate nucleotidohydrolase EC=3.6.1.23 ; Nucleotide metabolism |
Pubmed 10976061 |
|
![]() |
22 |
153 |
S=300 I=53 E=2.92403e-28 |
Deoxyuridine 5'-triphosphate nucleotidohydrolase EC=3.6.1.23 ; Nucleotide metabolism |
Pubmed 18524787 |
|
![]() |
8 |
153 |
S=280 I=42 E=7.29187e-26 |
Deoxyuridine 5'-triphosphate nucleotidohydrolase EC=3.6.1.23 ; Nucleotide metabolism |
Pubmed 15618402 |
|
![]() |
8 |
155 |
S=273 I=41 E=5.46414e-25 |
Deoxyuridine 5'-triphosphate nucleotidohydrolase EC=3.6.1.23 ; Nucleotide metabolism |
Pubmed 18508905 |
|
![]() |
16 |
155 |
S=271 I=43 E=9.5468e-25 |
Deoxyuridine 5'-triphosphate nucleotidohydrolase EC=3.6.1.23 ; Nucleotide metabolism |
Pubmed 17483455 |
|
![]() |
10 |
154 |
S=269 I=42 E=1.69733e-24 |
Deoxyuridine 5'-triphosphate nucleotidohydrolase EC=3.6.1.23 ; Nucleotide metabolism |
Pubmed 16707693 |
|
![]() |
7 |
153 |
S=261 I=39 E=1.4751e-23 |
Deoxyuridine 5'-triphosphate nucleotidohydrolase EC=3.6.1.23 ; Nucleotide metabolism |
Pubmed 18550617 |
|
![]() |
1 |
155 |
S=793 I=100 E=4.39354e-88 |
Deoxyuridine 5'-triphosphate nucleotidohydrolase EC=3.6.1.23 ; Nucleotide metabolism |
![]() |
1 |
155 |
S=793 I=100 E=4.39354e-88 |
Deoxyuridine 5'-triphosphate nucleotidohydrolase EC=3.6.1.23 ; Nucleotide metabolism |
![]() |
1 |
155 |
S=780 I=99 E=1.68102e-86 |
Deoxyuridine 5'-triphosphate nucleotidohydrolase EC=3.6.1.23 ; Nucleotide metabolism |
![]() |
1 |
155 |
S=774 I=98 E=8.7342e-86 |
Deoxyuridine 5'-triphosphate nucleotidohydrolase EC=3.6.1.23 ; Nucleotide metabolism |
![]() |
1 |
155 |
S=774 I=98 E=8.7342e-86 |
Deoxyuridine 5'-triphosphate nucleotidohydrolase EC=3.6.1.23 ; Nucleotide metabolism |
![]() |
[G3DSA:2.70.40.10] | 10 |
153 |
- |
![]() |
[MF_00116] | 10 |
154 |
- |
![]() |
[PTHR11241] | 14 |
155 |
- |
![]() |
IPR008180 [PF00692] | 21 |
153 |
DeoxyUTP pyrophosphatase domain |
![]() |
IPR008181 [TIGR00576] | 11 |
154 |
DeoxyUTP pyrophosphatase domain, subfamily 1, |
![]() |
75 |
153 |
S=175 I=46 E=8.3876e-14 |
![]() |
46 |
81 |
S=147 I=78 E=2.18306e-10 |
![]() |
8 |
45 |
S=136 I=68 E=5.593e-09 |
![]() |
24 |
80 |
S=130 I=50 E=2.93144e-08 |
![]() |
51 |
80 |
S=114 I=63 E=2.50149e-06 |
![]() |
23 |
81 |
S=104 I=37 E=3.93309e-05 |
![]() |
[SSF51283] | 9 |
154 |
- |
Access unfiltered results
Miscellaneous analyses
![]() XFF4834R_chr_4130 |
![]() DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
![]() |
![]() |
![]() XFF4834R_chr38810 |
ID | tmk |
AC | XFF4834R_chr38800 |
LT | XFF4834R_chr38800 |
OR | XFF4834R_chr from 4471526 to 4472209 on strand + |
DE | probable thymidylate kinase |
IP | Thymidylate kinase-like |
CL | 1.7.15 2'-deoxyribonucleotide/ribonucleoside metabolism GO:0009265 |
EC | |
GO |
InterPro Biological Process: dTDP biosynthetic process (GO:0006233) Molecular Function: ATP binding (GO:0005524) Molecular Function: thymidylate kinase activity (GO:0004798) Curated |
PM | |
AN | |
CC | COG: [F] Nucleotide transport and metabolism; |
CC | MODEL: XFF4834R |
CC | STATUS: curated by brin (20100907) |
MW | 24074.1 Da |
SQ | 227 aa |
........10........20........30........40........50 |
![]() |
NP_644314.1 lcl|tdk-XAC4014 |
1 |
227 |
S=951 I=85 E=2.05315e-108 |
thymidylate kinase |
![]() |
YP_365838.1 lcl|tdk-XCV4107 |
1 |
227 |
S=928 I=84 E=1.23514e-105 |
thymidylate kinase |
![]() |
NP_639271.1 lcl|tdk-XCC3931 |
1 |
227 |
S=782 I=74 E=6.60894e-88 |
thymidylate kinase |
![]() |
11 |
182 |
S=127 I=30 E=1.70104e-08 |
probable thymidylate kinase (dtmp kinase) protein |
![]() |
10 |
203 |
S=209 I=32 E=6.92456e-17 |
Probable thymidylate kinase EC=2.7.4.9 ; ATP-binding Nucleotide biosynthesis Nucleotide-binding Transferase |
Pubmed 18790866 |
|
![]() |
9 |
116 |
S=149 I=36 E=1.13158e-09 |
Thymidylate kinase EC=2.7.4.9 ; ATP-binding Nucleotide biosynthesis Nucleotide-binding Transferase |
Pubmed 18192393 |
|
![]() |
9 |
116 |
S=148 I=36 E=1.46987e-09 |
Thymidylate kinase EC=2.7.4.9 ; ATP-binding Nucleotide biosynthesis Nucleotide-binding Transferase |
Pubmed 18192381 |
|
![]() |
40 |
125 |
S=144 I=41 E=4.56589e-09 |
Thymidylate kinase EC=2.7.4.9 ; ATP-binding Nucleotide biosynthesis Nucleotide-binding Transferase |
||
![]() |
10 |
202 |
S=140 I=26 E=1.7182e-08 |
Thymidylate kinase EC=2.7.4.9 ; ATP-binding Nucleotide biosynthesis Nucleotide-binding Transferase |
Pubmed 14762060 |
|
![]() |
10 |
122 |
S=139 I=34 E=2.01016e-08 |
Thymidylate kinase EC=2.7.4.9 ; ATP-binding Nucleotide biosynthesis Nucleotide-binding Transferase |
Pubmed 15780005 |
|
![]() |
10 |
125 |
S=135 I=33 E=5.57509e-08 |
Thymidylate kinase EC=2.7.4.9 ; ATP-binding Nucleotide biosynthesis Nucleotide-binding Transferase |
Pubmed 16672622 |
|
![]() |
9 |
108 |
S=135 I=34 E=7.05485e-08 |
Thymidylate kinase EC=2.7.4.9 ; ATP-binding Nucleotide biosynthesis Nucleotide-binding Transferase |
Pubmed 18505588 |
|
![]() |
10 |
122 |
S=133 I=33 E=9.9988e-08 |
Thymidylate kinase EC=2.7.4.9 ; ATP-binding Nucleotide biosynthesis Nucleotide-binding Transferase |
Pubmed 18550617 |
|
![]() |
76 |
196 |
S=129 I=32 E=3.18826e-07 |
Probable thymidylate kinase 1 EC=2.7.4.9 ; ATP-binding Nucleotide biosynthesis Nucleotide-binding Transferase |
Pubmed 10701121 |
|
![]() |
1 |
227 |
S=951 I=85 E=5.07059e-107 |
Thymidylate kinase EC=2.7.4.9 ; ATP-binding Nucleotide biosynthesis Nucleotide-binding Transferase |
![]() |
1 |
227 |
S=928 I=84 E=3.05037e-104 |
Thymidylate kinase EC=2.7.4.9 ; ATP-binding Nucleotide biosynthesis Nucleotide-binding Transferase |
![]() |
1 |
227 |
S=909 I=82 E=7.21924e-102 |
Thymidylate kinase EC=2.7.4.9 ; ATP-binding Nucleotide biosynthesis Nucleotide-binding Transferase |
![]() |
1 |
227 |
S=909 I=82 E=7.21924e-102 |
Thymidylate kinase EC=2.7.4.9 ; ATP-binding Nucleotide biosynthesis Nucleotide-binding Transferase |
![]() |
1 |
227 |
S=909 I=82 E=7.21924e-102 |
Thymidylate kinase EC=2.7.4.9 ; ATP-binding Nucleotide biosynthesis Nucleotide-binding Transferase |
![]() |
[G3DSA:3.40.50.300] | 8 |
213 |
- |
![]() |
IPR018094 [MF_00165] | 10 |
200 |
Thymidylate kinase |
![]() |
IPR018094 [PTHR10344] | 9 |
204 |
Thymidylate kinase |
![]() |
IPR000062 [PF02223] | 14 |
188 |
Thymidylate kinase-like |
![]() |
IPR018094 [TIGR00041] | 5 |
192 |
Thymidylate kinase |
![]() |
[seg] | 20 |
39 |
- |
![]() |
[seg] | 126 |
139 |
- |
![]() |
140 |
227 |
S=253 I=58 E=3.49082e-23 |
![]() |
[SSF52540] | 7 |
196 |
- |
Access unfiltered results
Miscellaneous analyses
![]() XFF4834R_chr39390 |
![]() DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
![]() |
![]() |
![]() XFF4834R_chr39410 |
ID | nrdB |
AC | XFF4834R_chr39400 |
LT | XFF4834R_chr39400 |
OR | XFF4834R_chr from 4534722 to 4535765 on strand - |
DE | probable ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like |
IP | Ribonucleotide reductase; Ferritin/ribonucleotide reductase-like |
CL | 1.7.15 2'-deoxyribonucleotide/ribonucleoside metabolism GO:0009265 |
EC | |
GO |
InterPro Biological Process: oxidation reduction (GO:0055114) Biological Process: deoxyribonucleoside diphosphate metabolic process (GO:0009186) Molecular Function: oxidoreductase activity (GO:0016491) Molecular Function: ribonucleoside-diphosphate reductase activity (GO:0004748) Molecular Function: transition metal ion binding (GO:0046914) Curated |
PM | |
AN | chez xav xac xcc nrdF chez xalc nrdB je ne trouve pas d explic pas d homologie entre F et B chez coli pas de publi chez coli pour nrdF fait parti de ferritin like superfamily |
CC | COG: [F] Nucleotide transport and metabolism; |
CC | MODEL: XFF4834R |
CC | STATUS: curated by brin (20100907) |
MW | 39519 Da |
SQ | 347 aa |
........10........20........30........40........50 |
![]() |
NP_644373.1 lcl|nrdF-XAC4074 |
1 |
347 |
S=1846 I=100 E=0 |
ribonucleotide-diphosphate reductase subunit beta |
![]() |
YP_365891.1 lcl|nrdF-XCV4160 |
1 |
347 |
S=1845 I=99 E=0 |
ribonucleotide-diphosphate reductase subunit beta |
![]() |
NP_639324.1 lcl|nrdF-XCC3985 |
1 |
347 |
S=1816 I=98 E=0 |
ribonucleotide-diphosphate reductase subunit beta |
![]() |
3 |
347 |
S=1696 I=91 E=0 |
probable ribonucleotide-diphosphate reductase beta subunit protein |
![]() |
IPR012348 [G3DSA:1.10.620.20] | 7 |
317 |
Ribonucleotide reductase-related |
![]() |
[PTHR23409:SF5] | 23 |
346 |
- |
![]() |
IPR000358 [PTHR23409] | 23 |
346 |
Ribonucleotide reductase |
![]() |
IPR000358 [PF00268] | 33 |
309 |
Ribonucleotide reductase |
![]() |
IPR009078 [SSF47240] | 7 |
318 |
Ferritin/ribonucleotide reductase-like |
Access unfiltered results
Miscellaneous analyses
![]() XFF4834R_chr39400 |
![]() DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
![]() |
![]() |
![]() XFF4834R_chr39420 |
ID | nrdA |
AC | XFF4834R_chr39410 |
LT | XFF4834R_chr39410 |
OR | XFF4834R_chr from 4535940 to 4538438 on strand - |
DE | probable secreted ribonucleoside-diphosphate reductase 2, alpha subunit |
IP | Ribonucleotide reductase large subunit, C-terminal; Ribonucleotide reductase R1 subunit, N-terminal |
CL | 1.7.15 2'-deoxyribonucleotide/ribonucleoside metabolism GO:0009265 |
EC | |
GO |
InterPro Biological Process: DNA replication (GO:0006260) Biological Process: oxidation reduction (GO:0055114) Cellular Component: ribonucleoside-diphosphate reductase complex (GO:0005971) Molecular Function: ribonucleoside-diphosphate reductase activity (GO:0004748) Molecular Function: ATP binding (GO:0005524) Molecular Function: protein binding (GO:0005515) Curated |
PM | |
AN | changement de nom de gene nrdE en nrdA pour etre comme xantho et coli |
CC | COG: [F] Nucleotide transport and metabolism; |
CC | MODEL: XFF4834R |
CC | STATUS: curated by brin (20100907) |
MW | 94186.4 Da |
SQ | 832 aa |
........10........20........30........40........50 |
![]() |
NP_644374.1 lcl|nrdA-XAC4075 |
1 |
832 |
S=4335 I=97 E=0 |
ribonucleotide-diphosphate reductase subunit alpha |
![]() |
YP_365892.1 lcl|nrdA-XCV4161 |
1 |
832 |
S=4329 I=97 E=0 |
ribonucleotide-diphosphate reductase subunit alpha |
![]() |
NP_639325.1 lcl|nrdA-XCC3986 |
1 |
832 |
S=4159 I=93 E=0 |
ribonucleotide-diphosphate reductase subunit alpha |
![]() |
46 |
832 |
S=3471 I=81 E=0 |
probable ribonucleoside-diphosphate reductase alpha subunit protein |
![]() |
IPR000788 [PR01183] | 369 |
388 |
Ribonucleotide reductase large subunit, C-terminal |
![]() |
IPR000788 [PR01183] | 512 |
523 |
Ribonucleotide reductase large subunit, C-terminal |
![]() |
IPR000788 [PR01183] | 573 |
596 |
Ribonucleotide reductase large subunit, C-terminal |
![]() |
IPR000788 [PR01183] | 611 |
633 |
Ribonucleotide reductase large subunit, C-terminal |
![]() |
IPR000788 [PR01183] | 639 |
662 |
Ribonucleotide reductase large subunit, C-terminal |
![]() |
IPR000788 [PR01183] | 700 |
727 |
Ribonucleotide reductase large subunit, C-terminal |
![]() |
[G3DSA:1.10.40.20] | 58 |
155 |
- |
![]() |
[G3DSA:1.10.395.10] | 162 |
271 |
- |
![]() |
[G3DSA:3.90.244.10] | 529 |
822 |
- |
![]() |
[PTHR11573:SF7] | 275 |
830 |
- |
![]() |
IPR000788 [PTHR11573] | 275 |
830 |
Ribonucleotide reductase large subunit, C-terminal |
![]() |
IPR000788 [PF02867] | 293 |
817 |
Ribonucleotide reductase large subunit, C-terminal |
![]() |
IPR013509 [PF00317] | 208 |
290 |
Ribonucleotide reductase large subunit, N-terminal |
![]() |
IPR013346 [TIGR02506] | 211 |
820 |
Ribonucleoside-diphosphate reductase, alpha subunit |
![]() |
IPR000788 [PS00089] | 689 |
711 |
Ribonucleotide reductase large subunit, C-terminal |
![]() |
IPR005144 [PS51161] | 62 |
155 |
ATP-cone |
![]() |
[seg] | 19 |
28 |
- |
![]() |
[seg] | 141 |
155 |
- |
![]() |
[SSF51998] | 293 |
822 |
- |
![]() |
IPR008926 [SSF48168] | 68 |
292 |
Ribonucleotide reductase R1 subunit, N-terminal |
Access unfiltered results
Miscellaneous analyses