4 hits
XFF4834R_chr04830 | speD | XFF4834R_chr04830 | S-adenosylmethionine decarboxylase |
XFF4834R_chr16250 | XFF4834R_chr17500382_1879548_f1_XFF4834R-XFF4834R_chr16250 | XFF4834R_chr16250 | putative glutathionylspermidine synthase |
XFF4834R_chr38130 | speA | XFF4834R_chr38130 | Arginine decarboxylase |
XFF4834R_chr38140 | speE | XFF4834R_chr38140 | Spermidine synthase |
![]() XFF4834R_chr04820 |
![]() DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
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![]() XFF4834R_chr04840 |
ID | speD |
AC | XFF4834R_chr04830 |
LT | XFF4834R_chr04830 |
OR | XFF4834R_chr from 549449 to 550243 on strand + |
DE | S-adenosylmethionine decarboxylase |
IP | S-adenosylmethionine decarboxylase, bacterial/archaeal; S-adenosylmethionine decarboxylase, bacterial; S-adenosylmethionine decarboxylase, core |
CL | 1.7.14.3 Spermidine biosynthesis |
EC | |
GO |
InterPro Biological Process: spermidine biosynthetic process (GO:0008295) Molecular Function: adenosylmethionine decarboxylase activity (GO:0004014) Curated
|
PM | |
AN | |
CC | COG: [E] Amino acid transport and metabolism; |
CC | MODEL: XFF4834R |
CC | STATUS: curated by darrasse (20120319) |
MW | 30805.8 Da |
SQ | 264 aa |
........10........20........30........40........50 |
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SPED_MF_00465 | raw_score=10474 norm_score=52.224 | S-adenosylmethionine decarboxylase proenzyme [speD]. |
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NP_640839.1 lcl|speD-XAC0484 |
1 |
264 |
S=1402 I=100 E=5.74587e-163 |
S-adenosylmethionine decarboxylase |
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YP_362251.1 lcl|speD-XCV0520 |
1 |
264 |
S=1399 I=100 E=1.44786e-162 |
S-adenosylmethionine decarboxylase |
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NP_635867.1 lcl|speD-XCC0473 |
1 |
264 |
S=1396 I=100 E=3.06454e-162 |
S-adenosylmethionine decarboxylase |
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1 |
264 |
S=1328 I=94 E=5.75278e-154 |
probable s-adenosylmethionine decarboxylase protein |
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1 |
264 |
S=1366 I=97 E=4.8574e-157 |
S-adenosyl methionine decarboxylase proenzyme ; Lyase Polyamine biosynthesis Pyruvate S-adenosyl-L-methionine Schiff base Spermidine |
Pubmed 17574998 |
|
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1 |
264 |
S=1283 I=89 E=6.59312e-147 |
S-adenosylmethionine decarboxylase SpeD ; Lyase Polyamine biosynthesis Pyruvate S-adenosyl-L-methionine Schiff base Spermidine |
Pubmed 15640196 |
|
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5 |
263 |
S=925 I=65 E=1.39406e-103 |
S-adenosylmethionine decarboxylase proenzyme EC=4.1.1.50 ; Lyase Polyamine biosynthesis Pyruvate S-adenosyl-L-methionine Schiff base Spermidine |
Pubmed 11526206 |
|
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5 |
262 |
S=919 I=65 E=8.25521e-103 |
S-adenosylmethionine decarboxylase proenzyme EC=4.1.1.50 ; Allosteric Autocatalytic cleavage Lyase Magnesium Polyamine biosynthesis Pyruvate S-ad |
||
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2 |
262 |
S=877 I=62 E=1.00463e-97 |
S-adenosylmethionine decarboxylase proenzyme EC=4.1.1.50 ; Autocatalytic cleavage Lyase Polyamine biosynthesis Pyruvate S-adenosyl-L-methionine Schiff b |
Pubmed 18441057 |
|
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1 |
264 |
S=1402 I=100 E=1.46823e-161 |
S-adenosylmethionine decarboxylase proenzyme EC=4.1.1.50 ; Autocatalytic cleavage Lyase Polyamine biosynthesis Pyruvate S-adenosyl-L-methionine Schiff b |
||
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1 |
264 |
S=1399 I=100 E=3.69968e-161 |
S-adenosylmethionine decarboxylase proenzyme EC=4.1.1.50 ; Autocatalytic cleavage Lyase Polyamine biosynthesis Pyruvate S-adenosyl-L-methionine Schiff b |
||
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1 |
264 |
S=1396 I=100 E=7.83076e-161 |
S-adenosylmethionine decarboxylase proenzyme EC=4.1.1.50 ; Autocatalytic cleavage Lyase Polyamine biosynthesis Pyruvate S-adenosyl-L-methionine Schiff b |
||
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1 |
264 |
S=1396 I=100 E=7.83076e-161 |
S-adenosylmethionine decarboxylase proenzyme EC=4.1.1.50 ; Autocatalytic cleavage Lyase Polyamine biosynthesis Pyruvate S-adenosyl-L-methionine Schiff b |
||
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1 |
264 |
S=1396 I=100 E=7.83076e-161 |
S-adenosylmethionine decarboxylase proenzyme EC=4.1.1.50 ; Autocatalytic cleavage Lyase Polyamine biosynthesis Pyruvate S-adenosyl-L-methionine Schiff b |
||
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IPR016067 [G3DSA:3.60.90.10] | 48 |
187 |
S-adenosylmethionine decarboxylase, core |
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IPR009165 [PIRSF001356] | 1 |
264 |
S-adenosylmethionine decarboxylase, bacterial |
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IPR003826 [PF02675] | 42 |
170 |
S-adenosylmethionine decarboxylase, bacterial/archaeal |
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IPR009165 [TIGR03331] | 7 |
262 |
S-adenosylmethionine decarboxylase, bacterial |
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7 |
260 |
S=1061 I=76 E=4.73654e-121 |
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IPR016067 [SSF56276] | 48 |
175 |
S-adenosylmethionine decarboxylase, core |
Access unfiltered results
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Set of Uniprot with relevant PubMed cross-references ncbi-blastp |
5 hits |
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Swiss-Prot ncbi-blastp |
102 hits |
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Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp |
0 hits |
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HAMAP scan |
1 hits |
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IprScan |
5 hits |
Miscellaneous analyses
![]() XFF4834R_chr16240 |
![]() DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
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![]() XFF4834R_chr16260 |
ID | XFF4834R_chr17500382_1879548_f1_XFF4834R-XFF4834R_chr16250 |
AC | XFF4834R_chr16250 |
LT | XFF4834R_chr16250 |
OR | XFF4834R_chr from 1878382 to 1879548 on strand + |
DE | putative glutathionylspermidine synthase |
IP | Glutathionylspermidine synthase |
CL | 1.7.14.3 Spermidine biosynthesis |
EC | |
GO |
InterPro Curated |
PM | |
AN | |
CC | COG: [E] Amino acid transport and metabolism; |
CC | MODEL: XFF4834R |
CC | STATUS: curated by jacques (20110314) |
MW | 43600.7 Da |
SQ | 388 aa |
........10........20........30........40........50 |
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NP_643311.1 lcl|XAC3002-XAC3002 |
1 |
388 |
S=2026 I=99 E=0 |
synthetase/amidase |
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YP_364883.1 lcl|XCV3152 |
1 |
388 |
S=2018 I=98 E=0 |
putative glutathionylspermidine synthase |
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NP_638181.1 lcl|XCC2833 |
1 |
388 |
S=1929 I=93 E=0 |
synthetase/amidase |
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1 |
388 |
S=987 I=48 E=6.87561e-111 |
Uncharacterized protein ygiC |
Pubmed 1314093 |
|
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11 |
381 |
S=336 I=29 E=5.69703e-32 |
Trypanothione synthetase Trypanothione synthetase, putative |
Pubmed 12826302 |
|
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11 |
382 |
S=333 I=28 E=1.35056e-31 |
Trypanothione synthetase Trypanothione synthetase, putative |
Pubmed 12826302 |
|
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11 |
381 |
S=320 I=28 E=4.65408e-30 |
Trypanothione synthetase |
Pubmed 12121990 |
|
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55 |
381 |
S=320 I=29 E=4.73594e-30 |
Trypanothione synthetase EC=6.3.1.9 ; ATP-binding Ligase Magnesium Nucleotide-binding |
||
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55 |
381 |
S=316 I=28 E=1.37202e-29 |
Trypanothione synthetase |
Pubmed 15537651 |
|
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55 |
381 |
S=308 I=28 E=1.5354e-28 |
Trypanothione synthetase EC=6.3.1.9 ; Ligase |
Pubmed 15610825 |
|
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55 |
381 |
S=302 I=28 E=8.70436e-28 |
Trypanothione synthetase |
Pubmed 18083246 |
|
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34 |
383 |
S=300 I=26 E=1.46868e-27 |
Trypanothione synthetase EC=6.3.1.9 ; Ligase |
Pubmed 12967709 |
|
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55 |
381 |
S=297 I=27 E=2.97601e-27 |
Trypanothione synthetase |
Pubmed 15610825 |
|
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1 |
388 |
S=987 I=48 E=4.73336e-111 |
Uncharacterized protein ygiC |
||
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1 |
388 |
S=987 I=48 E=4.73336e-111 |
Uncharacterized protein ygiC |
||
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1 |
388 |
S=987 I=48 E=4.73336e-111 |
Uncharacterized protein ygiC |
||
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1 |
386 |
S=983 I=51 E=1.67576e-110 |
Uncharacterized protein yjfC |
||
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1 |
387 |
S=603 I=37 E=1.64098e-64 |
Uncharacterized protein HI0929 |
||
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IPR005494 [PF03738] | 3 |
387 |
Glutathionylspermidine synthase |
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193 |
386 |
S=480 I=49 E=1.25207e-50 |
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1 |
169 |
S=414 I=50 E=1.32201e-42 |
Access unfiltered results
![]() |
Set of Uniprot with relevant PubMed cross-references ncbi-blastp |
13 hits |
![]() |
Swiss-Prot ncbi-blastp |
9 hits |
![]() |
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp |
0 hits |
![]() |
HAMAP scan |
0 hits |
![]() |
IprScan |
1 hits |
Miscellaneous analyses
![]() XFF4834R_chr_4053 |
![]() DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
![]() |
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![]() XFF4834R_chr38140 |
ID | speA |
AC | XFF4834R_chr38130 |
LT | XFF4834R_chr38130 |
OR | XFF4834R_chr from 4406364 to 4408301 on strand - |
DE | Arginine decarboxylase |
IP | Orn/DAP/Arg decarboxylase 2 |
CL | 1.7.14.3 Spermidine biosynthesis |
EC | |
GO |
InterPro Biological Process: spermidine biosynthetic process (GO:0008295) Biological Process: arginine catabolic process (GO:0006527) Molecular Function: arginine decarboxylase activity (GO:0008792) Molecular Function: catalytic activity (GO:0003824) Curated |
PM | |
AN | GenProtEC Metabolism --> Carbon compound utilization --> Amino acids --> Arginine degradation III (agmatinase pathway) Metabolism --> Central intermediary metabolism --> Polyamine biosynthesis --> Putrescine biosynthesis I Location of gene products --> Periplasmic space |
CC | COG: [E] Amino acid transport and metabolism; |
CC | MODEL: XFF4834R |
CC | STATUS: curated by darrasse (20120410) |
MW | 70918.3 Da |
SQ | 645 aa |
........10........20........30........40........50 |
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7 |
642 |
S=1540 I=48 E=1.34394e-177 |
Biosynthetic arginine decarboxylase EC=4.1.1.19 ; Lyase Magnesium Metal-binding Periplasm Polyamine biosynthesis Putrescine Pyridoxal phosphate |
Pubmed 2198270 |
|
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19 |
573 |
S=951 I=40 E=3.24768e-106 |
Arginine decarboxylase EC=4.1.1.19 ; Lyase Spermidine biosynthesis |
||
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19 |
573 |
S=950 I=40 E=4.44516e-106 |
Arginine decarboxylase EC=4.1.1.19 ; Lyase Spermidine biosynthesis |
||
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19 |
573 |
S=934 I=39 E=3.92782e-104 |
Arginine decarboxylase EC=4.1.1.19 ; Lyase Magnesium Putrescine biosynthesis Pyridoxal phosphate Spermidine |
Pubmed 7548836 |
|
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16 |
572 |
S=918 I=40 E=2.91531e-102 |
Arginine decarboxylase EC=4.1.1.19 ; Lyase Spermidine biosynthesis |
Pubmed 15723827 |
|
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21 |
572 |
S=917 I=39 E=4.91898e-102 |
Arginine decarboxylase EC=4.1.1.19 ; Lyase Spermidine biosynthesis |
Pubmed 12060267 |
|
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21 |
573 |
S=915 I=39 E=7.87674e-102 |
Arginine decarboxylase 1 EC=4.1.1.19 ; Lyase Magnesium Putrescine biosynthesis Pyridoxal phosphate Spermidine |
Pubmed 8756495 |
|
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20 |
632 |
S=903 I=37 E=2.44472e-100 |
Arginine decarboxylase EC=4.1.1.19 ; Lyase Spermidine biosynthesis |
Pubmed 15527979 |
|
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35 |
359 |
S=896 I=53 E=1.66441e-99 |
Arginine decarboxylase EC=4.1.1.19 ; Lyase Spermidine biosynthesis |
Pubmed 16318732 |
|
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35 |
359 |
S=894 I=53 E=2.31818e-99 |
Arginine decarboxylase EC=4.1.1.19 ; Lyase Spermidine biosynthesis |
Pubmed 16318732 |
|
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18 |
645 |
S=3318 I=100 E=0 |
Biosynthetic arginine decarboxylase EC=4.1.1.19 ; Lyase Magnesium Metal-binding Polyamine biosynthesis Pyridoxal phosphate Spermidine |
||
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18 |
645 |
S=3172 I=97 E=0 |
Biosynthetic arginine decarboxylase EC=4.1.1.19 ; Lyase Magnesium Metal-binding Polyamine biosynthesis Pyridoxal phosphate Spermidine |
||
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21 |
644 |
S=2781 I=84 E=0 |
Biosynthetic arginine decarboxylase EC=4.1.1.19 ; Lyase Magnesium Metal-binding Polyamine biosynthesis Pyridoxal phosphate Spermidine |
||
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21 |
644 |
S=2781 I=84 E=0 |
Biosynthetic arginine decarboxylase EC=4.1.1.19 ; Lyase Magnesium Metal-binding Polyamine biosynthesis Pyridoxal phosphate Spermidine |
||
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21 |
644 |
S=2770 I=84 E=0 |
Biosynthetic arginine decarboxylase EC=4.1.1.19 ; Lyase Magnesium Metal-binding Polyamine biosynthesis Pyridoxal phosphate Spermidine |
||
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IPR002985 [PR01180] | 81 |
96 |
Arginine decarboxylase |
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IPR002985 [PR01180] | 105 |
119 |
Arginine decarboxylase |
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IPR002985 [PR01180] | 159 |
174 |
Arginine decarboxylase |
![]() |
IPR002985 [PR01180] | 185 |
206 |
Arginine decarboxylase |
![]() |
IPR002985 [PR01180] | 209 |
231 |
Arginine decarboxylase |
![]() |
IPR002985 [PR01180] | 336 |
353 |
Arginine decarboxylase |
![]() |
IPR002985 [PR01180] | 473 |
494 |
Arginine decarboxylase |
![]() |
IPR002985 [PR01180] | 498 |
523 |
Arginine decarboxylase |
![]() |
IPR002985 [PR01180] | 551 |
572 |
Arginine decarboxylase |
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IPR000183 [PR01179] | 113 |
131 |
Orn/DAP/Arg decarboxylase 2 |
![]() |
IPR000183 [PR01179] | 136 |
148 |
Orn/DAP/Arg decarboxylase 2 |
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IPR000183 [PR01179] | 252 |
265 |
Orn/DAP/Arg decarboxylase 2 |
![]() |
IPR000183 [PR01179] | 346 |
365 |
Orn/DAP/Arg decarboxylase 2 |
![]() |
IPR000183 [PR01179] | 551 |
564 |
Orn/DAP/Arg decarboxylase 2 |
![]() |
[G3DSA:3.20.20.10] | 82 |
351 |
- |
![]() |
IPR002985 [PIRSF001336] | 21 |
642 |
Arginine decarboxylase |
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IPR002985 [PTHR11482:SF3] | 72 |
565 |
Arginine decarboxylase |
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[PTHR11482] | 72 |
565 |
- |
![]() |
IPR000183 [PF02784] | 94 |
357 |
Orn/DAP/Arg decarboxylase 2 |
![]() |
IPR000183 [PF00278] | 360 |
572 |
Orn/DAP/Arg decarboxylase 2 |
![]() |
IPR002985 [TIGR01273] | 21 |
640 |
Arginine decarboxylase |
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467 |
582 |
S=404 I=59 E=2.22253e-41 |
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21 |
140 |
S=304 I=50 E=2.98554e-29 |
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308 |
453 |
S=239 I=39 E=2.12929e-21 |
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141 |
202 |
S=234 I=77 E=8.51703e-21 |
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204 |
230 |
S=143 I=100 E=1.08669e-09 |
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587 |
642 |
S=128 I=52 E=5.99652e-08 |
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201 |
229 |
S=115 I=69 E=2.80381e-06 |
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202 |
229 |
S=106 I=64 E=2.80147e-05 |
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202 |
230 |
S=106 I=55 E=3.03015e-05 |
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197 |
229 |
S=105 I=64 E=4.29462e-05 |
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[SSF51419] | 81 |
359 |
- |
Access unfiltered results
Miscellaneous analyses
![]() XFF4834R_chr38130 |
![]() DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
![]() |
![]() |
![]() XFF4834R_chr_4056 |
ID | speE |
AC | XFF4834R_chr38140 |
LT | XFF4834R_chr38140 |
OR | XFF4834R_chr from 4408483 to 4409340 on strand + |
DE | Spermidine synthase |
IP | Spermine synthase |
CL | 1.7.14.3 Spermidine biosynthesis |
EC | |
GO |
InterPro Molecular Function: catalytic activity (GO:0003824) Curated |
PM | |
AN | |
CC | COG: [E] Amino acid transport and metabolism; |
CC | MODEL: XFF4834R |
CC | STATUS: curated by darrasse (20120410) |
MW | 31522.4 Da |
SQ | 285 aa |
........10........20........30........40........50 |
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2 |
283 |
S=482 I=36 E=8.86678e-50 |
Probable spermidine synthase EC=2.5.1.16 ; Polyamine biosynthesis Transferase |
Pubmed 18790866 |
|
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16 |
285 |
S=456 I=36 E=1.21058e-46 |
Spermidine synthase EC=2.5.1.16 ; biosynthesis Transferase |
Pubmed 7803821 |
|
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7 |
280 |
S=454 I=38 E=1.77664e-46 |
Spermidine synthase EC=2.5.1.16 ; Polyamine biosynthesis Transferase |
Pubmed 9353933 |
|
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7 |
284 |
S=452 I=35 E=3.32833e-46 |
Spermidine synthase EC=2.5.1.16 ; Polyamine biosynthesis Transferase |
Pubmed 11731804 |
|
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16 |
285 |
S=451 I=35 E=4.80021e-46 |
Spermidine synthase EC=2.5.1.16 ; Polymorphism biosynthesis Transferase |
||
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16 |
240 |
S=437 I=38 E=2.24444e-44 |
Spermidine synthase EC=2.5.1.16 ; Transferase |
Pubmed 16088399 |
|
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2 |
284 |
S=436 I=33 E=2.76685e-44 |
SPEE_NEUCR Spermidine synthase (Putrescine aminopropyltransferase) (SPDSY) Spermidine synthase |
Pubmed 12410837 |
|
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16 |
240 |
S=435 I=38 E=3.78703e-44 |
Spermidine synthase 2 EC=2.5.1.16 ; biosynthesis Transferase |
Pubmed 10344199 |
|
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16 |
240 |
S=434 I=38 E=5.46176e-44 |
Spermidine synthase 1 EC=2.5.1.16 ; biosynthesis Transferase |
Pubmed 9517003 |
|
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31 |
232 |
S=431 I=42 E=1.26135e-43 |
Putative spermidine synthase ; Transferase |
Pubmed 18394889 |
|
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1 |
285 |
S=1434 I=94 E=2.22406e-165 |
Spermidine synthase EC=2.5.1.16 ; Polyamine biosynthesis Transferase |
||
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1 |
285 |
S=1430 I=93 E=6.78921e-165 |
Spermidine synthase EC=2.5.1.16 ; Polyamine biosynthesis Transferase |
||
![]() |
1 |
285 |
S=1412 I=92 E=1.08534e-162 |
Spermidine synthase EC=2.5.1.16 ; Polyamine biosynthesis Transferase |
||
![]() |
1 |
285 |
S=1412 I=92 E=1.08534e-162 |
Spermidine synthase EC=2.5.1.16 ; Polyamine biosynthesis Transferase |
||
![]() |
1 |
285 |
S=1412 I=92 E=1.08534e-162 |
Spermidine synthase EC=2.5.1.16 ; Polyamine biosynthesis Transferase |
||
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[G3DSA:2.30.140.10] | 4 |
56 |
- |
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[G3DSA:3.40.50.150] | 57 |
283 |
- |
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IPR001045 [PTHR11558] | 7 |
285 |
Spermine synthase |
![]() |
IPR001045 [PF01564] | 9 |
243 |
Spermine synthase |
![]() |
IPR001045 [TIGR00417] | 7 |
278 |
Spermine synthase |
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[seg] | 242 |
256 |
- |
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7 |
283 |
S=484 I=40 E=3.56181e-51 |
![]() |
233 |
285 |
S=146 I=55 E=3.10001e-10 |
![]() |
[SSF53335] | 2 |
283 |
- |
Access unfiltered results
Miscellaneous analyses