Xanthomonas fuscans subsp. fuscans

4 hits

  1. XFF4834R_chr04830speDXFF4834R_chr04830S-adenosylmethionine decarboxylase
  2. XFF4834R_chr16250XFF4834R_chr17500382_1879548_f1_XFF4834R-XFF4834R_chr16250XFF4834R_chr16250putative glutathionylspermidine synthase
  3. XFF4834R_chr38130speAXFF4834R_chr38130Arginine decarboxylase
  4. XFF4834R_chr38140speEXFF4834R_chr38140Spermidine synthase

speD XFF4834R_chr04830
XFF4834R_chr04820
XFF4834R_chr04820 		Cluster
DrawMap 		XML file

FASTA file 		Extract
Sequence 		Codon
Usage 		Framed OrthoMCL XFF4834R_chr04840
XFF4834R_chr04840
ID speD
AC XFF4834R_chr04830
LT XFF4834R_chr04830
OR XFF4834R_chr from 549449 to 550243 on strand +
DE S-adenosylmethionine decarboxylase
IP S-adenosylmethionine decarboxylase, bacterial/archaeal; S-adenosylmethionine decarboxylase, bacterial; S-adenosylmethionine decarboxylase, core
CL 1.7.14.3 Spermidine biosynthesis
EC
GO InterPro
Biological Process: spermidine biosynthetic process (GO:0008295)
Molecular Function: adenosylmethionine decarboxylase activity (GO:0004014)

Curated
PM
AN
CC COG: [E] Amino acid transport and metabolism;
CC MODEL: XFF4834R
CC STATUS: curated by darrasse (20120319)
MW 30805.8 Da
SQ 264 aa
  
........10........20........30........40........50
         |         |         |         |         |
MVKPLPRLRLQGFNNLTKALSFNIYDVCYARTEEERQRYIEYIDEQYDAD
RLTQILTDVAEIIGANILNIARQDYDPQGASVTILISEEPVIDKKQAGKE
LISDAVVAHMDKSHITVHTYPETHPQEGIATFRADIDVATCGVISPLKAL
NYLIESLESDIVIMDYRVRGFTRDVKGKKHYIDHKINSIQQFLAKNVKSR
YEMFDVNVYQENIFHTKMHLKDFDLDQYLFEERAKNLSFKERMKIETLLK
REIEELFHGRNLSE

    





Show or not Domain decomposition
 

    

        Hamap
        SPED_MF_00465
	raw_score=10474 norm_score=52.224
	
S-adenosylmethionine decarboxylase proenzyme [speD].

    





    

        
            
                X.species
            
                
        
NP_640839.1 lcl|speD-XAC0484

        
1

	
264

	
S=1402 I=100 E=5.74587e-163

	
S-adenosylmethionine decarboxylase

     	

   





    

        
            
                X.species
            
                
        
YP_362251.1 lcl|speD-XCV0520

        
1

	
264

	
S=1399 I=100 E=1.44786e-162

	
S-adenosylmethionine decarboxylase

     	

   





    

        
            
                X.species
            
                
        
NP_635867.1 lcl|speD-XCC0473

        
1

	
264

	
S=1396 I=100 E=3.06454e-162

	
S-adenosylmethionine decarboxylase

     	

   





    

        
            
                X.species
            
                
        
 lcl|speD-XALc_0287

        
1

	
264

	
S=1328 I=94 E=5.75278e-154

	
probable s-adenosylmethionine decarboxylase protein

     	

   





    

        
                pubmed
        
        

        
1

	
264

	
S=1366 I=97 E=4.8574e-157

	
S-adenosyl methionine decarboxylase proenzyme ; Lyase Polyamine biosynthesis Pyruvate S-adenosyl-L-methionine Schiff base Spermidine

	
Pubmed 17574998

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
1

	
264

	
S=1283 I=89 E=6.59312e-147

	
S-adenosylmethionine decarboxylase SpeD ; Lyase Polyamine biosynthesis Pyruvate S-adenosyl-L-methionine Schiff base Spermidine

	
Pubmed 15640196

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
5

	
263

	
S=925 I=65 E=1.39406e-103

	
S-adenosylmethionine decarboxylase proenzyme EC=4.1.1.50 ; Lyase Polyamine biosynthesis Pyruvate S-adenosyl-L-methionine Schiff base Spermidine

	
Pubmed 11526206

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
5

	
262

	
S=919 I=65 E=8.25521e-103

	
S-adenosylmethionine decarboxylase proenzyme EC=4.1.1.50 ; Allosteric Autocatalytic cleavage Lyase Magnesium Polyamine biosynthesis Pyruvate S-ad

	
Pubmed 3316212,8202364

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
2

	
262

	
S=877 I=62 E=1.00463e-97

	
S-adenosylmethionine decarboxylase proenzyme EC=4.1.1.50 ; Autocatalytic cleavage Lyase Polyamine biosynthesis Pyruvate S-adenosyl-L-methionine Schiff b

	
Pubmed 18441057

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
1

	
264

	
S=1402 I=100 E=1.46823e-161

	
S-adenosylmethionine decarboxylase proenzyme EC=4.1.1.50 ; Autocatalytic cleavage Lyase Polyamine biosynthesis Pyruvate S-adenosyl-L-methionine Schiff b

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
1

	
264

	
S=1399 I=100 E=3.69968e-161

	
S-adenosylmethionine decarboxylase proenzyme EC=4.1.1.50 ; Autocatalytic cleavage Lyase Polyamine biosynthesis Pyruvate S-adenosyl-L-methionine Schiff b

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
1

	
264

	
S=1396 I=100 E=7.83076e-161

	
S-adenosylmethionine decarboxylase proenzyme EC=4.1.1.50 ; Autocatalytic cleavage Lyase Polyamine biosynthesis Pyruvate S-adenosyl-L-methionine Schiff b

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
1

	
264

	
S=1396 I=100 E=7.83076e-161

	
S-adenosylmethionine decarboxylase proenzyme EC=4.1.1.50 ; Autocatalytic cleavage Lyase Polyamine biosynthesis Pyruvate S-adenosyl-L-methionine Schiff b

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
1

	
264

	
S=1396 I=100 E=7.83076e-161

	
S-adenosylmethionine decarboxylase proenzyme EC=4.1.1.50 ; Autocatalytic cleavage Lyase Polyamine biosynthesis Pyruvate S-adenosyl-L-methionine Schiff b

	

    

    

         
        
prodomImg

    





    

        Iprscan
        IPR016067
	[G3DSA:3.60.90.10]
	
48

	
187

	
	
S-adenosylmethionine decarboxylase, core

    





    

        Iprscan
        IPR009165
	[PIRSF001356]
	
1

	
264

	
	
S-adenosylmethionine decarboxylase, bacterial

    





    

        Iprscan
        IPR003826
	[PF02675]
	
42

	
170

	
	
S-adenosylmethionine decarboxylase, bacterial/archaeal

    





    

        Iprscan
        IPR009165
	[TIGR03331]
	
7

	
262

	
	
S-adenosylmethionine decarboxylase, bacterial

    





    

        
            
                
            
                
        
PD123272

        
7

	
260

	
S=1061 I=76 E=4.73654e-121

    	
    





    

        Iprscan
        IPR016067
	[SSF56276]
	
48

	
175

	
	
S-adenosylmethionine decarboxylase, core

    




Show or not Suggestions
Suggest an annotation


Move your mouse over each field to get more informations


ID


DE


EC


GO


PM



CC


CL

 
  Your email  
 
  Validation code (copy this one 6vx7JfJc)  
 
     



Show or not Access unfiltered results






    

       
            
                pubmed
            
        
	    
            
Set of Uniprot with relevant PubMed cross-references ncbi-blastp

        		
 	    
            5 hits
        
    

    

        
            
                swiss-prot
            
        
	    
            
Swiss-Prot ncbi-blastp

        		
 	    
            102 hits
        
    

    
    
    

        
            
                XFF4834R
            
        
    	
            
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp

        		        
        
            0 hits
        
    

        
    

        
            
                hamap
            
        
	
            
HAMAP scan

        		        
        
            1 hits
        
    

    
    

	    
            
                Interpro Scan
            
            
	        
                
IprScan

            		        
            
                5 hits
            
    








Show or not Miscellaneous analyses




    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetLocalBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBC2SHyG/XFF4834R_chr04830.xml_fasta", "https://iant.toulouse.inra.fr/bacteria/annotation/web/img/XFF4834R.png"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    
    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetNcbiBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBC2SHyG/XFF4834R_chr04830.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetUniprotBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBC2SHyG/XFF4834R_chr04830.xml_fasta"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetKeggBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBC2SHyG/XFF4834R_chr04830.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    

    






XFF4834R_chr17500382_1879548_f1_XFF4834R-XFF4834R_chr16250 XFF4834R_chr16250




    

         
             
            XFF4834R_chr16240
            
XFF4834R_chr16240
            
        		


       
           
	   Cluster
	   
DrawMap
	   
        		
	
        
            XML file
        	


	    FASTA file
        		
	
	
             
            Extract
Sequence
            
        		
	
	
             
            Codon
Usage
            
        		
    
    
            
            Framed
            
     
  	



	
            OrthoMCL
            
    
  	
    
    
    

     


	
             
            XFF4834R_chr16260
            
XFF4834R_chr16260
            
        		

    





    

        ID
        XFF4834R_chr17500382_1879548_f1_XFF4834R-XFF4834R_chr16250
    

    

        AC
        XFF4834R_chr16250
    

    

        LT
        XFF4834R_chr16250
    

    

        OR
        XFF4834R_chr from 1878382 to 1879548 on strand +
    

   

        DE
        putative glutathionylspermidine synthase
  

   

        IP
        Glutathionylspermidine synthase
  
  
  
  

        CL
        1.7.14.3 Spermidine biosynthesis 
    

  

        EC
        
    

    
    

        GO
        
            InterPro



            Curated

        		
    


  

        PM
        
    

  

        AN
        
    

  

        CC
        COG: [E] Amino acid transport and metabolism; 
    

    

        CC
        MODEL: XFF4834R 
  
    
  

        CC
        STATUS: curated by jacques (20110314)
  

  
  


    

        MW
        43600.7 Da
    


    

        SQ
        388 aa
    

    

         
        
........10........20........30........40........50
         |         |         |         |         |
MQRILIPERADWRTQAESLGFHFHTIDGEPYWDESAYYAFSLRQIEDDIE
APTQELHDMAMQLVDEVVGSEALMTRLAIPPFYWDWIVNSWKERDPHLCG
RMDLAYSGDGPAKLYELNYDTPTSLYESAYFQWLWLEQQIASGALPKGTD
QYNLIQDLLCETLGALAVDGAIGAQMHFAAVRDSLEDRATVRYLRDCAHQ
VGISTEEVAIEDIGLSAEGWFTDEQDRVIHTLFKLYPLEFMMEERFGPAL
IADRVRLIEPAWKSVLSNKGILPLLWDRHQGHPNLLPARFAQAGEAPSAG
WVRKPLLSREGANIALVTAQGEAAHTDGPYVDGPAILQAHHPLPVFDGRH
ALVGSWVVADRPAGLGMRDDDGPITRDTSRFVPHVITD

    






    

        
            
                X.species
            
                
        
NP_643311.1 lcl|XAC3002-XAC3002

        
1

	
388

	
S=2026 I=99 E=0

	
synthetase/amidase

     	

   





    

        
            
                X.species
            
                
        
YP_364883.1 lcl|XCV3152

        
1

	
388

	
S=2018 I=98 E=0

	
putative glutathionylspermidine synthase

     	

   





    

        
            
                X.species
            
                
        
NP_638181.1 lcl|XCC2833

        
1

	
388

	
S=1929 I=93 E=0

	
synthetase/amidase

     	

   





    

        
                pubmed
        
        

        
1

	
388

	
S=987 I=48 E=6.87561e-111

	
Uncharacterized protein ygiC

	
Pubmed 1314093

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
11

	
381

	
S=336 I=29 E=5.69703e-32

	
Trypanothione synthetase Trypanothione synthetase, putative

	
Pubmed 12826302

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
11

	
382

	
S=333 I=28 E=1.35056e-31

	
Trypanothione synthetase Trypanothione synthetase, putative

	
Pubmed 12826302

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
11

	
381

	
S=320 I=28 E=4.65408e-30

	
Trypanothione synthetase

	
Pubmed 12121990

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
55

	
381

	
S=320 I=29 E=4.73594e-30

	
Trypanothione synthetase EC=6.3.1.9 ; ATP-binding Ligase Magnesium Nucleotide-binding

	
Pubmed 9677355,1304372

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
55

	
381

	
S=316 I=28 E=1.37202e-29

	
Trypanothione synthetase

	
Pubmed 15537651

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
55

	
381

	
S=308 I=28 E=1.5354e-28

	
Trypanothione synthetase EC=6.3.1.9 ; Ligase

	
Pubmed 15610825

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
55

	
381

	
S=302 I=28 E=8.70436e-28

	
Trypanothione synthetase

	
Pubmed 18083246

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
34

	
383

	
S=300 I=26 E=1.46868e-27

	
Trypanothione synthetase EC=6.3.1.9 ; Ligase

	
Pubmed 12967709

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
55

	
381

	
S=297 I=27 E=2.97601e-27

	
Trypanothione synthetase

	
Pubmed 15610825

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
1

	
388

	
S=987 I=48 E=4.73336e-111

	
Uncharacterized protein ygiC

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
1

	
388

	
S=987 I=48 E=4.73336e-111

	
Uncharacterized protein ygiC

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
1

	
388

	
S=987 I=48 E=4.73336e-111

	
Uncharacterized protein ygiC

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
1

	
386

	
S=983 I=51 E=1.67576e-110

	
Uncharacterized protein yjfC

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
1

	
387

	
S=603 I=37 E=1.64098e-64

	
Uncharacterized protein HI0929

	

    

    

         
        
prodomImg

    





    

        Iprscan
        IPR005494
	[PF03738]
	
3

	
387

	
	
Glutathionylspermidine synthase

    





    

        
            
                
            
                
        
PD597651

        
193

	
386

	
S=480 I=49 E=1.25207e-50

    	
    





    

        
            
                
            
                
        
PD007794

        
1

	
169

	
S=414 I=50 E=1.32201e-42

    	
    




Show or not Suggestions
Suggest an annotation


Move your mouse over each field to get more informations


ID


DE


EC


GO


PM



CC


CL

 
  Your email  
 
  Validation code (copy this one 6YT0nDF7)  
 
     



Show or not Access unfiltered results






    

       
            
                pubmed
            
        
	    
            
Set of Uniprot with relevant PubMed cross-references ncbi-blastp

        		
 	    
            13 hits
        
    

    

        
            
                swiss-prot
            
        
	    
            
Swiss-Prot ncbi-blastp

        		
 	    
            9 hits
        
    

    
    
    

        
            
                XFF4834R
            
        
    	
            
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp

        		        
        
            0 hits
        
    

        
    

        
            
                hamap
            
        
	
            
HAMAP scan

        		        
        
            0 hits
        
    

    
    

	    
            
                Interpro Scan
            
            
	        
                
IprScan

            		        
            
                1 hits
            
    








Show or not Miscellaneous analyses




    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetLocalBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBC2SHyG/XFF4834R_chr16250.xml_fasta", "https://iant.toulouse.inra.fr/bacteria/annotation/web/img/XFF4834R.png"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    
    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetNcbiBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBC2SHyG/XFF4834R_chr16250.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetUniprotBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBC2SHyG/XFF4834R_chr16250.xml_fasta"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetKeggBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBC2SHyG/XFF4834R_chr16250.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    

    






speA XFF4834R_chr38130




    

         
             
            XFF4834R_chr_4053
            
XFF4834R_chr_4053
            
        		


       
           
	   Cluster
	   
DrawMap
	   
        		
	
        
            XML file
        	


	    FASTA file
        		
	
	
             
            Extract
Sequence
            
        		
	
	
             
            Codon
Usage
            
        		
    
    
            
            Framed
            
     
  	



	
            OrthoMCL
            
    
  	
    
    
    

     


	
             
            XFF4834R_chr38140
            
XFF4834R_chr38140
            
        		

    





    

        ID
        speA
    

    

        AC
        XFF4834R_chr38130
    

    

        LT
        XFF4834R_chr38130
    

    

        OR
        XFF4834R_chr from 4406364 to 4408301 on strand -
    

   

        DE
        Arginine decarboxylase
  

   

        IP
        Orn/DAP/Arg decarboxylase 2
  
  
  
  

        CL
        1.7.14.3 Spermidine biosynthesis 
    

  

        EC
        
    

    
    

        GO
        
            InterPro
Biological Process: spermidine biosynthetic process (GO:0008295)
Biological Process: arginine catabolic process (GO:0006527)
Molecular Function: arginine decarboxylase activity (GO:0008792)
Molecular Function: catalytic activity (GO:0003824)


            Curated

        		
    


  

        PM
        
    

  

        AN
        GenProtEC Metabolism --> Carbon compound utilization --> Amino acids --> Arginine degradation III (agmatinase pathway) Metabolism --> Central intermediary metabolism --> Polyamine biosynthesis --> Putrescine biosynthesis I Location of gene products --> Periplasmic space 
    

  

        CC
        COG: [E] Amino acid transport and metabolism; 
    

    

        CC
        MODEL: XFF4834R 
  
    
  

        CC
        STATUS: curated by darrasse (20120410)
  

  
  


    

        MW
        70918.3 Da
    


    

        SQ
        645 aa
    

    

         
        
........10........20........30........40........50
         |         |         |         |         |
MPGVTLHALFNSSRDSEMSDWSLDQARKTYSIPHWADGYFDVNAAGHVVV
TPTADGPAVSLPEVVDAARAAGAKLPLLVRFPDILGQRLGKLQAAFAQAQ
SEWDYAGGYTAVYPIKVNQHRGVAGTLASHHGEGFGLEAGSKPELMAVLA
LSRPGGLIVCNGYKDREYIRLALIGRKLGLQTFIVIEKPSELTLVLEEAR
ALDVKPGLGVRMRLASLGAGKWQNSGGDKAKFGLSPRQVLDLWKTLRDTE
YADSLNLLHFHMGSQISNVRDIANGMREATRYFVELSRLGAKISHVDVGG
GLGIDYEGTRSRSYCSINYGLHSYASNIVQPLASACEEHGLTPPRIVTEC
GRAMTAHHAVLIANVSEVEQAPEGRVPDAHDDEPAAIRHLREIHDELDVR
PAVELFQEAQHFHAEGLSAYALGQIDLTHRARIDDLFYAIAHGVRARLSF
DEKSHRPVLDELNERLVDKYFVNFSVFESIPDVWAIDQVFPIVPIERLNE
APLRRGIIADMTCDSDGMVKTYVENESLDSSLPLHRLNAGESYRIGFFLV
GAYQEILGDIHNLFGDTDAVEVVVDRDGYRIAQQRRGDTTDVMLDYVGYQ
LDTLRATYAERIAAAHLSPERAQELSAALEAGLTGYTYLSDEPLG

    






    

        
                pubmed
        
        

        
7

	
642

	
S=1540 I=48 E=1.34394e-177

	
Biosynthetic arginine decarboxylase EC=4.1.1.19 ; Lyase Magnesium Metal-binding Periplasm Polyamine biosynthesis Putrescine Pyridoxal phosphate

	
Pubmed 2198270

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
19

	
573

	
S=951 I=40 E=3.24768e-106

	
Arginine decarboxylase EC=4.1.1.19 ; Lyase Spermidine biosynthesis

	
Pubmed 16769692,13679984

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
19

	
573

	
S=950 I=40 E=4.44516e-106

	
Arginine decarboxylase EC=4.1.1.19 ; Lyase Spermidine biosynthesis

	
Pubmed 16769692,13679984

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
19

	
573

	
S=934 I=39 E=3.92782e-104

	
Arginine decarboxylase EC=4.1.1.19 ; Lyase Magnesium Putrescine biosynthesis Pyridoxal phosphate Spermidine

	
Pubmed 7548836

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
16

	
572

	
S=918 I=40 E=2.91531e-102

	
Arginine decarboxylase EC=4.1.1.19 ; Lyase Spermidine biosynthesis

	
Pubmed 15723827

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
21

	
572

	
S=917 I=39 E=4.91898e-102

	
Arginine decarboxylase EC=4.1.1.19 ; Lyase Spermidine biosynthesis

	
Pubmed 12060267

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
21

	
573

	
S=915 I=39 E=7.87674e-102

	
Arginine decarboxylase 1 EC=4.1.1.19 ; Lyase Magnesium Putrescine biosynthesis Pyridoxal phosphate Spermidine

	
Pubmed 8756495

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
20

	
632

	
S=903 I=37 E=2.44472e-100

	
Arginine decarboxylase EC=4.1.1.19 ; Lyase Spermidine biosynthesis

	
Pubmed 15527979

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
35

	
359

	
S=896 I=53 E=1.66441e-99

	
Arginine decarboxylase EC=4.1.1.19 ; Lyase Spermidine biosynthesis

	
Pubmed 16318732

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
35

	
359

	
S=894 I=53 E=2.31818e-99

	
Arginine decarboxylase EC=4.1.1.19 ; Lyase Spermidine biosynthesis

	
Pubmed 16318732

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
18

	
645

	
S=3318 I=100 E=0

	
Biosynthetic arginine decarboxylase EC=4.1.1.19 ; Lyase Magnesium Metal-binding Polyamine biosynthesis Pyridoxal phosphate Spermidine

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
18

	
645

	
S=3172 I=97 E=0

	
Biosynthetic arginine decarboxylase EC=4.1.1.19 ; Lyase Magnesium Metal-binding Polyamine biosynthesis Pyridoxal phosphate Spermidine

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
21

	
644

	
S=2781 I=84 E=0

	
Biosynthetic arginine decarboxylase EC=4.1.1.19 ; Lyase Magnesium Metal-binding Polyamine biosynthesis Pyridoxal phosphate Spermidine

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
21

	
644

	
S=2781 I=84 E=0

	
Biosynthetic arginine decarboxylase EC=4.1.1.19 ; Lyase Magnesium Metal-binding Polyamine biosynthesis Pyridoxal phosphate Spermidine

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
21

	
644

	
S=2770 I=84 E=0

	
Biosynthetic arginine decarboxylase EC=4.1.1.19 ; Lyase Magnesium Metal-binding Polyamine biosynthesis Pyridoxal phosphate Spermidine

	

    

    

         
        
prodomImg

    





    

        Iprscan
        IPR002985
	[PR01180]
	
81

	
96

	
	
Arginine decarboxylase

    





    

        Iprscan
        IPR002985
	[PR01180]
	
105

	
119

	
	
Arginine decarboxylase

    





    

        Iprscan
        IPR002985
	[PR01180]
	
159

	
174

	
	
Arginine decarboxylase

    





    

        Iprscan
        IPR002985
	[PR01180]
	
185

	
206

	
	
Arginine decarboxylase

    





    

        Iprscan
        IPR002985
	[PR01180]
	
209

	
231

	
	
Arginine decarboxylase

    





    

        Iprscan
        IPR002985
	[PR01180]
	
336

	
353

	
	
Arginine decarboxylase

    





    

        Iprscan
        IPR002985
	[PR01180]
	
473

	
494

	
	
Arginine decarboxylase

    





    

        Iprscan
        IPR002985
	[PR01180]
	
498

	
523

	
	
Arginine decarboxylase

    





    

        Iprscan
        IPR002985
	[PR01180]
	
551

	
572

	
	
Arginine decarboxylase

    





    

        Iprscan
        IPR000183
	[PR01179]
	
113

	
131

	
	
Orn/DAP/Arg decarboxylase 2

    





    

        Iprscan
        IPR000183
	[PR01179]
	
136

	
148

	
	
Orn/DAP/Arg decarboxylase 2

    





    

        Iprscan
        IPR000183
	[PR01179]
	
252

	
265

	
	
Orn/DAP/Arg decarboxylase 2

    





    

        Iprscan
        IPR000183
	[PR01179]
	
346

	
365

	
	
Orn/DAP/Arg decarboxylase 2

    





    

        Iprscan
        IPR000183
	[PR01179]
	
551

	
564

	
	
Orn/DAP/Arg decarboxylase 2

    





    

        Iprscan
        
	[G3DSA:3.20.20.10]
	
82

	
351

	
	
-

    





    

        Iprscan
        IPR002985
	[PIRSF001336]
	
21

	
642

	
	
Arginine decarboxylase

    





    

        Iprscan
        IPR002985
	[PTHR11482:SF3]
	
72

	
565

	
	
Arginine decarboxylase

    





    

        Iprscan
        
	[PTHR11482]
	
72

	
565

	
	
-

    





    

        Iprscan
        IPR000183
	[PF02784]
	
94

	
357

	
	
Orn/DAP/Arg decarboxylase 2

    





    

        Iprscan
        IPR000183
	[PF00278]
	
360

	
572

	
	
Orn/DAP/Arg decarboxylase 2

    





    

        Iprscan
        IPR002985
	[TIGR01273]
	
21

	
640

	
	
Arginine decarboxylase

    





    

        
            
                
            
                
        
PD005416

        
467

	
582

	
S=404 I=59 E=2.22253e-41

    	
    





    

        
            
                
            
                
        
PD862121

        
21

	
140

	
S=304 I=50 E=2.98554e-29

    	
    





    

        
            
                
            
                
        
PDA1E4D8

        
308

	
453

	
S=239 I=39 E=2.12929e-21

    	
    





    

        
            
                
            
                
        
PDA1F8M5

        
141

	
202

	
S=234 I=77 E=8.51703e-21

    	
    





    

        
            
                
            
                
        
PDA1K8H5

        
204

	
230

	
S=143 I=100 E=1.08669e-09

    	
    





    

        
            
                
            
                
        
PD706117

        
587

	
642

	
S=128 I=52 E=5.99652e-08

    	
    





    

        
            
                
            
                
        
PDA52017

        
201

	
229

	
S=115 I=69 E=2.80381e-06

    	
    





    

        
            
                
            
                
        
PDA52015

        
202

	
229

	
S=106 I=64 E=2.80147e-05

    	
    





    

        
            
                
            
                
        
PDA2P3E5

        
202

	
230

	
S=106 I=55 E=3.03015e-05

    	
    





    

        
            
                
            
                
        
PDA2P3E4

        
197

	
229

	
S=105 I=64 E=4.29462e-05

    	
    





    

        Iprscan
        
	[SSF51419]
	
81

	
359

	
	
-

    




Show or not Suggestions
Suggest an annotation


Move your mouse over each field to get more informations


ID


DE


EC


GO


PM



CC


CL

 
  Your email  
 
  Validation code (copy this one pbA0QMba)  
 
     



Show or not Access unfiltered results






    

       
            
                pubmed
            
        
	    
            
Set of Uniprot with relevant PubMed cross-references ncbi-blastp

        		
 	    
            92 hits
        
    

    

        
            
                swiss-prot
            
        
	    
            
Swiss-Prot ncbi-blastp

        		
 	    
            110 hits
        
    

    
    
    

        
            
                XFF4834R
            
        
    	
            
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp

        		        
        
            0 hits
        
    

        
    

        
            
                hamap
            
        
	
            
HAMAP scan

        		        
        
            0 hits
        
    

    
    

	    
            
                Interpro Scan
            
            
	        
                
IprScan

            		        
            
                22 hits
            
    








Show or not Miscellaneous analyses




    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetLocalBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBC2SHyG/XFF4834R_chr38130.xml_fasta", "https://iant.toulouse.inra.fr/bacteria/annotation/web/img/XFF4834R.png"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    
    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetNcbiBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBC2SHyG/XFF4834R_chr38130.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetUniprotBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBC2SHyG/XFF4834R_chr38130.xml_fasta"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetKeggBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBC2SHyG/XFF4834R_chr38130.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    

    






speE XFF4834R_chr38140




    

         
             
            XFF4834R_chr38130
            
XFF4834R_chr38130
            
        		


       
           
	   Cluster
	   
DrawMap
	   
        		
	
        
            XML file
        	


	    FASTA file
        		
	
	
             
            Extract
Sequence
            
        		
	
	
             
            Codon
Usage
            
        		
    
    
            
            Framed
            
     
  	



	
            OrthoMCL
            
    
  	
    
    
    

     


	
             
            XFF4834R_chr_4056
            
XFF4834R_chr_4056
            
        		

    





    

        ID
        speE
    

    

        AC
        XFF4834R_chr38140
    

    

        LT
        XFF4834R_chr38140
    

    

        OR
        XFF4834R_chr from 4408483 to 4409340 on strand +
    

   

        DE
        Spermidine synthase 
  

   

        IP
        Spermine synthase
  
  
  
  

        CL
        1.7.14.3 Spermidine biosynthesis 
    

  

        EC
        
    

    
    

        GO
        
            InterPro
Molecular Function: catalytic activity (GO:0003824)


            Curated

        		
    


  

        PM
        
    

  

        AN
        
    

  

        CC
        COG: [E] Amino acid transport and metabolism; 
    

    

        CC
        MODEL: XFF4834R 
  
    
  

        CC
        STATUS: curated by darrasse (20120410)
  

  
  


    

        MW
        31522.4 Da
    


    

        SQ
        285 aa
    

    

         
        
........10........20........30........40........50
         |         |         |         |         |
MSANDNWYIEHFQPTGSAIGFRISGKLDEVQSPFQKIEIYQTTDWGKLML
IDGAVMLTSRDNFFYHEMISHPALFTHPAPKRVVIIGGGDCGTLREVLKH
PGVESATQCDIDEQVTRMSEKYFPELCDSNHDARAELLFNDGVAYMANCP
AGSVDIVIVDSTDPVGPAEGLFNKAFYESCFKALKDDGILVQQSESPLAL
LDLINEMRTEMGKAGFQSFKTLPFPQPCYPTGWWSVTMASKQADADFAFR
QDAAQAKGFDTLYYTAHQHTGVLVAPPFVAKALGE

    





Show or not Domain decomposition
 

    

        
                pubmed
        
        

        
2

	
283

	
S=482 I=36 E=8.86678e-50

	
Probable spermidine synthase EC=2.5.1.16 ; Polyamine biosynthesis Transferase

	
Pubmed 18790866

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
16

	
285

	
S=456 I=36 E=1.21058e-46

	
Spermidine synthase EC=2.5.1.16 ; biosynthesis Transferase

	
Pubmed 7803821

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
7

	
280

	
S=454 I=38 E=1.77664e-46

	
Spermidine synthase EC=2.5.1.16 ; Polyamine biosynthesis Transferase

	
Pubmed 9353933

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
7

	
284

	
S=452 I=35 E=3.32833e-46

	
Spermidine synthase EC=2.5.1.16 ; Polyamine biosynthesis Transferase

	
Pubmed 11731804

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
16

	
285

	
S=451 I=35 E=4.80021e-46

	
Spermidine synthase EC=2.5.1.16 ; Polymorphism biosynthesis Transferase

	
Pubmed 2344393,2069720

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
16

	
240

	
S=437 I=38 E=2.24444e-44

	
Spermidine synthase EC=2.5.1.16 ; Transferase

	
Pubmed 16088399

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
2

	
284

	
S=436 I=33 E=2.76685e-44

	
SPEE_NEUCR Spermidine synthase (Putrescine aminopropyltransferase) (SPDSY) Spermidine synthase

	
Pubmed 12410837

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
16

	
240

	
S=435 I=38 E=3.78703e-44

	
Spermidine synthase 2 EC=2.5.1.16 ; biosynthesis Transferase

	
Pubmed 10344199

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
16

	
240

	
S=434 I=38 E=5.46176e-44

	
Spermidine synthase 1 EC=2.5.1.16 ; biosynthesis Transferase

	
Pubmed 9517003

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
31

	
232

	
S=431 I=42 E=1.26135e-43

	
Putative spermidine synthase ; Transferase

	
Pubmed 18394889

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
1

	
285

	
S=1434 I=94 E=2.22406e-165

	
Spermidine synthase EC=2.5.1.16 ; Polyamine biosynthesis Transferase

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
1

	
285

	
S=1430 I=93 E=6.78921e-165

	
Spermidine synthase EC=2.5.1.16 ; Polyamine biosynthesis Transferase

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
1

	
285

	
S=1412 I=92 E=1.08534e-162

	
Spermidine synthase EC=2.5.1.16 ; Polyamine biosynthesis Transferase

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
1

	
285

	
S=1412 I=92 E=1.08534e-162

	
Spermidine synthase EC=2.5.1.16 ; Polyamine biosynthesis Transferase

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
1

	
285

	
S=1412 I=92 E=1.08534e-162

	
Spermidine synthase EC=2.5.1.16 ; Polyamine biosynthesis Transferase

	

    

    

         
        
prodomImg

    





    

        Iprscan
        
	[G3DSA:2.30.140.10]
	
4

	
56

	
	
-

    





    

        Iprscan
        
	[G3DSA:3.40.50.150]
	
57

	
283

	
	
-

    





    

        Iprscan
        IPR001045
	[PTHR11558]
	
7

	
285

	
	
Spermine synthase

    





    

        Iprscan
        IPR001045
	[PF01564]
	
9

	
243

	
	
Spermine synthase

    





    

        Iprscan
        IPR001045
	[TIGR00417]
	
7

	
278

	
	
Spermine synthase

    





    

        Iprscan
        
	[seg]
	
242

	
256

	
	
-

    





    

        
            
                
            
                
        
PD002785

        
7

	
283

	
S=484 I=40 E=3.56181e-51

    	
    





    

        
            
                
            
                
        
PDA1U0A5

        
233

	
285

	
S=146 I=55 E=3.10001e-10

    	
    





    

        Iprscan
        
	[SSF53335]
	
2

	
283

	
	
-

    




Show or not Suggestions
Suggest an annotation


Move your mouse over each field to get more informations


ID


DE


EC


GO


PM



CC


CL

 
  Your email  
 
  Validation code (copy this one LR5Sm9bo)  
 
     



Show or not Access unfiltered results






    

       
            
                pubmed
            
        
	    
            
Set of Uniprot with relevant PubMed cross-references ncbi-blastp

        		
 	    
            80 hits
        
    

    

        
            
                swiss-prot
            
        
	    
            
Swiss-Prot ncbi-blastp

        		
 	    
            195 hits
        
    

    
    
    

        
            
                XFF4834R
            
        
    	
            
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp

        		        
        
            0 hits
        
    

        
    

        
            
                hamap
            
        
	
            
HAMAP scan

        		        
        
            0 hits
        
    

    
    

	    
            
                Interpro Scan
            
            
	        
                
IprScan

            		        
            
                7 hits
            
    








Show or not Miscellaneous analyses




    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetLocalBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBC2SHyG/XFF4834R_chr38140.xml_fasta", "https://iant.toulouse.inra.fr/bacteria/annotation/web/img/XFF4834R.png"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    
    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetNcbiBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBC2SHyG/XFF4834R_chr38140.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetUniprotBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBC2SHyG/XFF4834R_chr38140.xml_fasta"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetKeggBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBC2SHyG/XFF4834R_chr38140.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    •