Xanthomonas fuscans subsp. fuscans

10 hits

  1. XFF4834R_chr11810XFF4834R_chr12360840_1325129_f3_XFF4834R-XFF4834R_chr11810XFF4834R_chr11810Putative lipid a core-o-antigen ligase protein
  2. XFF4834R_chr15940gtrBXFF4834R_chr15940putative bactoprenol glucosyl transferase
  3. XFF4834R_chr22970XFF4834R_chr25090466_2663434_r3_XFF4834R-XFF4834R_chr22970XFF4834R_chr22970putative glycosyl transferase
  4. XFF4834R_chr28180XFF4834R_chr30730560_3250498_r3_XFF4834R-XFF4834R_chr28180XFF4834R_chr28180putative glycosyltransferase
  5. XFF4834R_chr34760rmlDXFF4834R_chr34760dTDP-4-dehydrorhamnose reductase
  6. XFF4834R_chr34770rmlCXFF4834R_chr34770dTDP-4-dehydrorhamnose 3,5-epimerase
  7. XFF4834R_chr34780rmlAXFF4834R_chr34780glucose-1-phosphate thymidylyltransferase
  8. XFF4834R_chr34790rmlBXFF4834R_chr34790dTDP-glucose 4,6-dehydratase
  9. XFF4834R_chr34920wxcBXFF4834R_chr34920LPS O-antigen biosynthesis tyrosine kinase
  10. XFF4834R_chr36890XFF4834R_chr_4266503_4267714_r3_XFF4834R-XFF4834R_chr36890XFF4834R_chr36890putative O-antigen ligase

XFF4834R_chr12360840_1325129_f3_XFF4834R-XFF4834R_chr11810 XFF4834R_chr11810
XFF4834R_chr11800
XFF4834R_chr11800 		Cluster
DrawMap 		XML file

FASTA file 		Extract
Sequence 		Codon
Usage 		Framed OrthoMCL XFF4834R_chr11820
XFF4834R_chr11820
ID XFF4834R_chr12360840_1325129_f3_XFF4834R-XFF4834R_chr11810
AC XFF4834R_chr11810
LT XFF4834R_chr11810
OR XFF4834R_chr from 1323840 to 1325129 on strand +
DE Putative lipid a core-o-antigen ligase protein
IP O-antigen ligase-related
CL 1.6.3.1 antigen GO:0009243
EC
GO InterPro


Curated
PM
AN
CC COG: [M] Cell wall/membrane/envelope biogenesis;
CC MODEL: XFF4834R
CC STATUS: curated by opruvost (20100827)
MW 45884.2 Da
SQ 429 aa
  
........10........20........30........40........50
         |         |         |         |         |
MTPDAGRWAPLWVIVFVALWPTPGLAETVLSLGALFAAYRLLHARFRGGT
RLLSGAAWALTSVLFLAYWLPQMLSAFDAVDAGRALRKSATDLRYLPFMW
LCAIAVANAQRRRRTFTGLAVIGGVWTLDALLQAAFGTSPLFFGIDQIKQ
LISGHGLCTAQELALVDRLSGVLGPCNLKFGQTLASLSPFLLLALGRRHV
LAWLVGAAAVGIVLVLAGSRASWITYGVIMLLSGWQLLGGRRLLAVAVAG
ALLAVALVAVAPQARERIQRTTLAFGNGEQGVDQALSGRAQIWGAALCMI
REHPLNGVGARGFRQAYQACNPAPGRAPAWGDGPAFHAHQIVLEILAETG
VIGLLLWLAGAAQAWRAWRYSSVVAREQARPAMIALVATVFPFNTHLAFY
SSFWGGLSLMLAGLYAGALLNDDADRVSR

    






    

        
            
                XFF4834R
            
                
        
NP_643773.1 XAC3466-XAC3466

        
1

	
404

	
S=1615 I=81 E=0

	
membrane protein

     	

   





    

        
            
                XFF4834R
            
                
        
YP_365325.1 waaL-XCV3594

        
1

	
404

	
S=1594 I=80 E=0

	
Lipid A core-O-antigen ligase

     	

   





    

        
            
                XFF4834R
            
                
        
NP_638685.1 XCC3339

        
1

	
404

	
S=1467 I=75 E=1.63216e-170

	
membrane protein

     	

   





    

        
            
                XFF4834R
            
                
        
XALc_0744 waaL-XALc_0744

        
1

	
404

	
S=1050 I=53 E=4.69601e-120

	
probable lipid a core-o-antigen ligase protein

     	

   





    

        Iprscan
        IPR007016
	[PF04932]
	
207

	
358

	
	
O-antigen ligase-related

    





    

        Iprscan
        
	[seg]
	
184

	
195

	
	
-

    





    

        Iprscan
        
	[seg]
	
200

	
218

	
	
-

    





    

        Iprscan
        
	[seg]
	
237

	
261

	
	
-

    





    

        Iprscan
        
	[seg]
	
353

	
369

	
	
-

    





    

        Iprscan
        
	[seg]
	
405

	
425

	
	
-

    





    

        Iprscan
        
	[SignalP-NN(euk)]
	
1

	
26

	
	
-

    





    

        Iprscan
        
	[tmhmm]
	
13

	
35

	
	
-

    





    

        Iprscan
        
	[tmhmm]
	
48

	
70

	
	
-

    





    

        Iprscan
        
	[tmhmm]
	
90

	
109

	
	
-

    





    

        Iprscan
        
	[tmhmm]
	
116

	
138

	
	
-

    





    

        Iprscan
        
	[tmhmm]
	
200

	
217

	
	
-

    





    

        Iprscan
        
	[tmhmm]
	
222

	
239

	
	
-

    





    

        Iprscan
        
	[tmhmm]
	
243

	
262

	
	
-

    





    

        Iprscan
        
	[tmhmm]
	
341

	
363

	
	
-

    





    

        Iprscan
        
	[tmhmm]
	
397

	
419

	
	
-

    





    

        
            
                
            
                
        
PD690841

        
62

	
275

	
S=675 I=67 E=2.89081e-74

    	
    





    

        
            
                
            
                
        
PDA1L3V0

        
1

	
61

	
S=279 I=89 E=2.35324e-26

    	
    





    

        
            
                
            
                
        
PD416824

        
288

	
352

	
S=155 I=48 E=2.4702e-11

    	
    





    

        
            
                
            
                
        
PDA2F0B6

        
262

	
286

	
S=128 I=100 E=5.49544e-08

    	
    





    

        
            
                
            
                
        
PDA3F4S1

        
262

	
286

	
S=114 I=88 E=2.75514e-06

    	
    





    

        
            
                
            
                
        
PD323518

        
383

	
404

	
S=114 I=100 E=2.85292e-06

    	
    




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ID


DE


EC


GO


PM



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CL

 
  Your email  
 
  Validation code (copy this one VDSBGgdG)  
 
     



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                pubmed
            
        
	    
            
Set of Uniprot with relevant PubMed cross-references ncbi-blastp

        		
 	    
            0 hits
        
    

    

        
            
                swiss-prot
            
        
	    
            
Swiss-Prot ncbi-blastp

        		
 	    
            0 hits
        
    

    
    
    

        
            
                XFF4834R
            
        
    	
            
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp

        		        
        
            0 hits
        
    

        
    

        
            
                hamap
            
        
	
            
HAMAP scan

        		        
        
            0 hits
        
    

    
    

	    
            
                Interpro Scan
            
            
	        
                
IprScan

            		        
            
                16 hits
            
    








Show or not Miscellaneous analyses




    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetLocalBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBmELw4D/XFF4834R_chr11810.xml_fasta", "https://iant.toulouse.inra.fr/bacteria/annotation/web/img/XFF4834R.png"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    
    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetNcbiBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBmELw4D/XFF4834R_chr11810.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetUniprotBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBmELw4D/XFF4834R_chr11810.xml_fasta"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetKeggBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBmELw4D/XFF4834R_chr11810.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    

    






gtrB XFF4834R_chr15940




    

         
             
            XFF4834R_chr15930
            
XFF4834R_chr15930
            
        		


       
           
	   Cluster
	   
DrawMap
	   
        		
	
        
            XML file
        	


	    FASTA file
        		
	
	
             
            Extract
Sequence
            
        		
	
	
             
            Codon
Usage
            
        		
    
    
            
            Framed
            
     
  	



	
            OrthoMCL
            
    
  	
    
    
    

     


	
             
            XFF4834R_chr15950
            
XFF4834R_chr15950
            
        		

    





    

        ID
        gtrB
    

    

        AC
        XFF4834R_chr15940
    

    

        LT
        XFF4834R_chr15940
    

    

        OR
        XFF4834R_chr from 1840068 to 1841114 on strand +
    

   

        DE
        putative bactoprenol glucosyl transferase
  

   

        IP
        Glycosyl transferase, family 2
  
  
  
  

        CL
        1.6.3.1 antigen	GO:0009243 
    

  

        EC
        
    

    
    

        GO
        
            InterPro



            Curated

        		
    


  

        PM
        
    

  

        AN
        38 % identity E. Coli : Putative Bactoprenol glucosyl transferase homolog from prophage CPS-53 CL : modification of O antigen 
    

  

        CC
        COG: [M] Cell wall/membrane/envelope biogenesis; 
    

    

        CC
        MODEL: XFF4834R 
  
    
  

        CC
        STATUS: curated by irobene (20100429)
  

  
  


    

        MW
        38113.6 Da
    


    

        SQ
        348 aa
    

    

         
        
........10........20........30........40........50
         |         |         |         |         |
MSAIDTAQLPVAPERLTVLIAAFNEETSIPLLHPRLCAVLAQLPALQTHV
LYVDDGSTDGTWEVVHALTEADAQVSAVRLSRNFGKEVAISAGLDHVLPG
AVVLLDADGQDPPELIPEFVALWRGGYDNIFGTRVIREGESWLKRSAAHA
FYRVIRRLSRTPIPADTGDFRLLSPRVVQALQQLRERHRFMKGLFGWVGF
RQVALPYRREPRLSGHSKFTVWRLWNFALDGITSFSTVPLRAATYLGLLT
ALLAFLFGAWVVIKAALVGDPVAGWPTLMSVILFLGGVQLIALGLIGEYL
GRLYDEAKQRPLYLVDTHRGAVGVGCDHQSKRGAGHADRTTAVGDQAG

    






    

        
            
                XFF4834R
            
                
        
XFF4834R_chr34830 lcl|XFF4834R_chr37970548_4039504_f2_XFF4834R-XFF4834R_chr34830

        
16

	
311

	
S=232 I=26 E=1.39577e-21

	

     	

   





    

        
            
                XFF4834R
            
                
        
XFF4834R_chr37970 lcl|XFF4834R_chr41060322_4387044_f1_XFF4834R-XFF4834R_chr37970

        
15

	
220

	
S=160 I=26 E=7.59068e-13

	

     	

   





    

        
            
                XFF4834R
            
                
        
XFF4834R_chr19410 lcl|pgaC-XFF4834R_chr19410

        
10

	
114

	
S=96 I=30 E=3.98992e-05

	
predicted glycosyl transferase

     	

   





    

        
            
                XFF4834R
            
                
        
XFF4834R_chr34830 lcl|XFF4834R_chr37970548_4039504_f2_XFF4834R-XFF4834R_chr34830

        
16

	
311

	
S=232 I=26 E=1.39577e-21

	

     	

   





    

        
            
                XFF4834R
            
                
        
XFF4834R_chr37970 lcl|XFF4834R_chr41060322_4387044_f1_XFF4834R-XFF4834R_chr37970

        
15

	
220

	
S=160 I=26 E=7.59068e-13

	

     	

   





    

        
            
                XFF4834R
            
                
        
XFF4834R_chr19410 lcl|pgaC-XFF4834R_chr19410

        
10

	
114

	
S=96 I=30 E=3.98992e-05

	
predicted glycosyl transferase

     	

   





    

        
            
                XFF4834R
            
                
        
YP_364914.1 lcl|gtrB-XCV3183

        
1

	
348

	
S=1649 I=92 E=0

	
putative bactoprenol glucosyltransferase

     	

   





    

        
            
                XFF4834R
            
                
        
NP_643355.1 lcl|gtrB-XAC3046

        
9

	
348

	
S=1632 I=93 E=0

	
glucosyl transferase

     	

   





    

        
            
                XFF4834R
            
                
        
NP_638211.1 lcl|gtrB-XCC2863

        
10

	
348

	
S=1446 I=82 E=3.84704e-168

	
glucosyl transferase

     	

   





    

        
            
                XFF4834R
            
                
        
 lcl|wcaA-XALc_2191

        
10

	
348

	
S=1134 I=66 E=3.10333e-130

	
putative glycosyltransferase protein

     	

   





    

        
            
                XFF4834R
            
                
        
YP_365444.1 lcl|wxcL-XCV3713

        
49

	
317

	
S=203 I=25 E=1.70305e-17

	
glycosyltransferase

     	

   





    

        
            
                XFF4834R
            
                
        
 lcl|XALc_2701

        
16

	
317

	
S=192 I=25 E=3.44804e-16

	
probable glycosyl transferase protein

     	

   





    

        
            
                XFF4834R
            
                
        
NP_636008.1 lcl|wxcL-XCC0616

        
49

	
317

	
S=185 I=25 E=2.97057e-15

	
glycosyltransferase

     	

   





    

        
            
                XFF4834R
            
                
        
NP_644210.1 lcl|dpm1-XAC3909

        
15

	
220

	
S=159 I=26 E=3.65281e-12

	
dolichol-phosphate mannosyltransferase

     	

   





    

        
            
                XFF4834R
            
                
        
 lcl|XALc_0107

        
16

	
220

	
S=157 I=27 E=6.72486e-12

	
putative glycosyl transferase protein

     	

   





    

        
            
                XFF4834R
            
                
        
YP_365753.1 lcl|XCV4022

        
15

	
220

	
S=157 I=27 E=7.0245e-12

	
putative glycosyltransferase

     	

   





    

        
            
                XFF4834R
            
                
        
NP_639194.1 lcl|dpm1-XCC3854

        
15

	
238

	
S=152 I=28 E=2.29922e-11

	
dolichol-phosphate mannosyltransferase

     	

   





    

        
                pubmed
        
        

        
16

	
315

	
S=806 I=51 E=5.42815e-89

	
Glycosyl transferase, family 2 Putative polymixin resistance glycosyltransferase transmembrane protein ; Plasmid

	
Pubmed 7766206,11544228

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
13

	
326

	
S=770 I=51 E=1.37517e-84

	
Glycosyl transferase, family 2 Putative polymixin resistance glycosyltransferase ; Plasmid

	
Pubmed 7766206,11544228

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
15

	
320

	
S=642 I=40 E=4.29275e-69

	
GtrB

	
Pubmed 15963704

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
15

	
320

	
S=638 I=40 E=1.31041e-68

	
Bactoprenol glucosyl transferase EC=2.4.1.- ; Glycosyltransferase Membrane Transmembrane

	
Pubmed 9426131

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
15

	
319

	
S=635 I=39 E=2.72568e-68

	
Bactoprenol glucosyl transferase EC=2.4.1.- ; Glycosyltransferase Membrane Transmembrane

	
Pubmed 10376843

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
15

	
319

	
S=634 I=39 E=4.07056e-68

	
Bactoprenol glucosyl transferase EC=2.4.1.- ; Glycosyltransferase Membrane Transmembrane

	
Pubmed 9305766,11889106

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
15

	
315

	
S=630 I=39 E=1.07141e-67

	
GtrB

	
Pubmed 15071057

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
15

	
315

	
S=630 I=39 E=1.07141e-67

	
O-antigen conversion protein

	
Pubmed 18621868

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
15

	
315

	
S=630 I=39 E=1.24259e-67

	
GtrB

	
Pubmed 12754248

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
15

	
315

	
S=629 I=39 E=1.54522e-67

	
GtrB

	
Pubmed 12562822

    

    

         
        
prodomImg

    





    

        
            
                sp_Pdown
            
        
        
sp|Q55487|Y501_SYNY3

        
15

	
315

	
S=752 I=48 E=1.19603e-82

	
Uncharacterized glycosyltransferase sll0501 EC=2.4.-.- ; Cell membrane Transmembrane

    





    

        
            
                sp_Pdown
            
        
        
sp|P68667|GTRB_SHIFL

        
15

	
320

	
S=638 I=40 E=9.0216e-69

	
SfII prophage-derived bactoprenol glucosyl transferase EC=2.4.1.- ; Cell membrane Glycosyltransferase Transmembrane

    





    

        
            
                sp_Pdown
            
        
        
sp|P68668|GTRB_BPSF2

        
15

	
320

	
S=638 I=40 E=9.0216e-69

	
Bactoprenol glucosyl transferase EC=2.4.1.- ; Glycosyltransferase Membrane Transmembrane

    





    

        
            
                sp_Pdown
            
        
        
sp|Q9T1D6|GTRB_BPSFX

        
15

	
319

	
S=635 I=39 E=1.87651e-68

	
Bactoprenol glucosyl transferase EC=2.4.1.- ; Glycosyltransferase Membrane Transmembrane

    





    

        
            
                sp_Pdown
            
        
        
sp|O22007|GTRB_BPSF5

        
15

	
319

	
S=634 I=39 E=2.80239e-68

	
Bactoprenol glucosyl transferase EC=2.4.1.- ; Glycosyltransferase Membrane Transmembrane

    





    

        
            
                
            
                
        
PD360542

        
176

	
239

	
S=235 I=67 E=6.02559e-21

    	
    





    

        
            
                
            
                
        
PD005262

        
260

	
315

	
S=195 I=58 E=3.37502e-16

    	
    





    

        
            
                
            
                
        
PDA346I2

        
319

	
348

	
S=150 I=97 E=1.20031e-10

    	
    





    

        
            
                
            
                
        
PDA1F9A6

        
137

	
172

	
S=141 I=69 E=1.47845e-09

    	
    





    

        
            
                
            
                
        
PDA8A346

        
109

	
172

	
S=132 I=39 E=1.45168e-08

    	
    





    

        
            
                
            
                
        
PD395383

        
15

	
83

	
S=114 I=38 E=2.12692e-06

    	
    





    

        
            
                
            
                
        
PDA8A343

        
123

	
172

	
S=111 I=34 E=5.74663e-06

    	
    




Show or not Suggestions
Suggest an annotation


Move your mouse over each field to get more informations


ID


DE


EC


GO


PM



CC


CL

 
  Your email  
 
  Validation code (copy this one JPTCIMKV)  
 
     



Show or not Access unfiltered results






    

       
            
                pubmed
            
        
	    
            
Set of Uniprot with relevant PubMed cross-references ncbi-blastp

        		
 	    
            43 hits
        
    

    

        
            
                swiss-prot
            
        
	    
            
Swiss-Prot ncbi-blastp

        		
 	    
            73 hits
        
    

    
    
    

        
            
                XFF4834R
            
        
    	
            
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp

        		        
        
            3 hits
        
    

        
    

        
            
                hamap
            
        
	
            
HAMAP scan

        		        
        
            0 hits
        
    

    
    

	    
            
                Interpro Scan
            
            
	        
                
IprScan

            		        
            
                0 hits
            
    








Show or not Miscellaneous analyses




    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetLocalBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBmELw4D/XFF4834R_chr15940.xml_fasta", "https://iant.toulouse.inra.fr/bacteria/annotation/web/img/XFF4834R.png"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    
    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetNcbiBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBmELw4D/XFF4834R_chr15940.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetUniprotBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBmELw4D/XFF4834R_chr15940.xml_fasta"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetKeggBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBmELw4D/XFF4834R_chr15940.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    

    






XFF4834R_chr25090466_2663434_r3_XFF4834R-XFF4834R_chr22970 XFF4834R_chr22970




    

         
             
            XFF4834R_chr22960
            
XFF4834R_chr22960
            
        		


       
           
	   Cluster
	   
DrawMap
	   
        		
	
        
            XML file
        	


	    FASTA file
        		
	
	
             
            Extract
Sequence
            
        		
	
	
             
            Codon
Usage
            
        		
    
    
            
            Framed
            
     
  	



	
            OrthoMCL
            
    
  	
    
    
    

     


	
             
            XFF4834R_chr22980
            
XFF4834R_chr22980
            
        		

    





    

        ID
        XFF4834R_chr25090466_2663434_r3_XFF4834R-XFF4834R_chr22970
    

    

        AC
        XFF4834R_chr22970
    

    

        LT
        XFF4834R_chr22970
    

    

        OR
        XFF4834R_chr from 2662466 to 2663434 on strand -
    

   

        DE
        putative glycosyl transferase
  

   

        IP
        Glycosyl transferase, family 4
  
  
  
  

        CL
        1.6.3.1 antigen	GO:0009243 
    

  

        EC
        
    

    
    

        GO
        
            InterPro
Cellular Component: integral to membrane (GO:0016021)
Molecular Function: phospho-N-acetylmuramoyl-pentapeptide-transferase activity (GO:0008963)


            Curated

        		
    


  

        PM
        
    

  

        AN
        
    

  

        CC
        COG: [M] Cell wall/membrane/envelope biogenesis; 
    

    

        CC
        MODEL: XFF4834R 
  
    
  

        CC
        STATUS: curated by irobene (20100521)
  

  
  


    

        MW
        34931.7 Da
    


    

        SQ
        322 aa
    

    

         
        
........10........20........30........40........50
         |         |         |         |         |
MVWLWCVLHLLVAALGTWGLRRYALHRRLLDHPGERRSHVVATPRGGGMA
IVAAILLGCVAACVLWPTSRLTVCWFAAGLLAVAGVGWWDDHRPLSARLR
FSIHLAASAALGTLVWHDTGSVWDGVLAAAASVILINVWNFMDGINGLAS
TQAALAAVGFSLVAPAGWLWAGLAVAAACLGFVPFNFPRARIFMGDGGSG
ALGYVLAALLALNVSGGQVSWWISWLPLTAFLVDAGFTLLARMLSGQRWW
EPHAQHVYQRLARRLETHVPVTGVYFAFSLIAVCLYLLIRHDPFWLQVSG
ALVWGMGATAIWHFLRDGLRNS

    





Show or not Domain decomposition
 

    

        
            
                XFF4834R
            
                
        
NP_642611.1 lcl|rfb303-XAC2294

        
1

	
322

	
S=1320 I=83 E=7.52781e-153

	
lipopolysaccharide core biosynthesis protein

     	

   





    

        
            
                XFF4834R
            
                
        
YP_364223.1 lcl|XCV2492

        
1

	
322

	
S=1247 I=81 E=4.70674e-144

	
glycosyltransferase

     	

   





    

        
            
                XFF4834R
            
                
        
NP_637546.1 lcl|rfb303-XCC2190

        
2

	
322

	
S=950 I=64 E=5.25107e-108

	
lipopolysaccharide core biosynthesis protein

     	

   





    

        
            
                XFF4834R
            
                
        
 lcl|XALc_1598

        
12

	
320

	
S=581 I=43 E=2.72324e-63

	
putative glycosyl transferase protein

     	

   





    

        Iprscan
        IPR000715
	[PTHR22926]
	
21

	
319

	
	
Glycosyl transferase, family 4

    





    

        Iprscan
        IPR018481
	[PF00953]
	
75

	
210

	
	
Glycosyl transferase, family 4, conserved region

    





    

        Iprscan
        
	[seg]
	
77

	
87

	
	
-

    





    

        Iprscan
        
	[seg]
	
163

	
178

	
	
-

    





    

        Iprscan
        
	[seg]
	
197

	
217

	
	
-

    





    

        Iprscan
        
	[SignalP-NN(euk)]
	
1

	
19

	
	
-

    





    

        Iprscan
        
	[tmhmm]
	
2

	
24

	
	
-

    





    

        Iprscan
        
	[tmhmm]
	
44

	
66

	
	
-

    





    

        Iprscan
        
	[tmhmm]
	
71

	
89

	
	
-

    





    

        Iprscan
        
	[tmhmm]
	
120

	
142

	
	
-

    





    

        Iprscan
        
	[tmhmm]
	
155

	
177

	
	
-

    





    

        Iprscan
        
	[tmhmm]
	
192

	
214

	
	
-

    





    

        Iprscan
        
	[tmhmm]
	
221

	
243

	
	
-

    





    

        Iprscan
        
	[tmhmm]
	
267

	
289

	
	
-

    





    

        Iprscan
        
	[tmhmm]
	
294

	
316

	
	
-

    




Show or not Suggestions
Suggest an annotation


Move your mouse over each field to get more informations


ID


DE


EC


GO


PM



CC


CL

 
  Your email  
 
  Validation code (copy this one 5mkbF3qR)  
 
     



Show or not Access unfiltered results






    

       
            
                pubmed
            
        
	    
            
Set of Uniprot with relevant PubMed cross-references ncbi-blastp

        		
 	    
            15 hits
        
    

    

        
            
                swiss-prot
            
        
	    
            
Swiss-Prot ncbi-blastp

        		
 	    
            1 hits
        
    

    
    
    

        
            
                XFF4834R
            
        
    	
            
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp

        		        
        
            0 hits
        
    

        
    

        
            
                hamap
            
        
	
            
HAMAP scan

        		        
        
            0 hits
        
    

    
    

	    
            
                Interpro Scan
            
            
	        
                
IprScan

            		        
            
                15 hits
            
    








Show or not Miscellaneous analyses




    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetLocalBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBmELw4D/XFF4834R_chr22970.xml_fasta", "https://iant.toulouse.inra.fr/bacteria/annotation/web/img/XFF4834R.png"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    
    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetNcbiBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBmELw4D/XFF4834R_chr22970.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetUniprotBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBmELw4D/XFF4834R_chr22970.xml_fasta"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetKeggBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBmELw4D/XFF4834R_chr22970.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    

    






XFF4834R_chr30730560_3250498_r3_XFF4834R-XFF4834R_chr28180 XFF4834R_chr28180




    

         
             
            XFF4834R_chr28170
            
XFF4834R_chr28170
            
        		


       
           
	   Cluster
	   
DrawMap
	   
        		
	
        
            XML file
        	


	    FASTA file
        		
	
	
             
            Extract
Sequence
            
        		
	
	
             
            Codon
Usage
            
        		
    
    
            
            Framed
            
     
  	



	
            OrthoMCL
            
    
  	
    
    
    

     


	
             
            XFF4834R_chr28190
            
XFF4834R_chr28190
            
        		

    





    

        ID
        XFF4834R_chr30730560_3250498_r3_XFF4834R-XFF4834R_chr28180
    

    

        AC
        XFF4834R_chr28180
    

    

        LT
        XFF4834R_chr28180
    

    

        OR
        XFF4834R_chr from 3249560 to 3250498 on strand -
    

   

        DE
        putative glycosyltransferase
  

   

        IP
        Glycosyl transferase, family 2
  
  
  
  

        CL
        1.6.3.1 antigen	GO:0009243 
    

  

        EC
        
    

    
    

        GO
        
            InterPro



            Curated

        		
    


  

        PM
        
    

  

        AN
        
    

  

        CC
        COG: [M] Cell wall/membrane/envelope biogenesis; 
    

    

        CC
        MODEL: XFF4834R 
  
    
  

        CC
        STATUS: curated by irobene (20100622)
  

  
  


    

        MW
        35045.7 Da
    


    

        SQ
        312 aa
    

    

         
        
........10........20........30........40........50
         |         |         |         |         |
MNDQAHARWPLVSVLIPAFNHARFVQRCLDSVLEDPYPCKEIVIIDDGSS
DATGEKIGQWISDHGHRLSVHFVQRENRGLAATLNELALRARGEYLRLGA
SDDYLLPGGLDAQVRYLRGHPQKLAVIGDACVVDTHGQLLHGSAMRDLHR
VDKDLYRSESGIRRAVIRQWAVSGAVALLRRSALRACSGWDESLRIEDWD
FFLRLVAGNALGFIDLPVCAYRLHGNNLSKTANVPARIANLRESRHVALR
CAPLFDEPDRTLLHAQAHYIAAKVEFLRRRPHRVAAHLVVYAWLSLPGRW
RPKRVARGAEPA

    





Show or not Domain decomposition
 

    

        
            
                XFF4834R
            
                
        
XFF4834R_chr19410 lcl|pgaC-XFF4834R_chr19410

        
10

	
205

	
S=137 I=27 E=4.18856e-10

	
predicted glycosyl transferase

     	

   





    

        
            
                XFF4834R
            
                
        
XFF4834R_chr15220 lcl|XFF4834R_chr16320014_1748098_r3_XFF4834R-XFF4834R_chr15220

        
6

	
121

	
S=134 I=32 E=1.01042e-09

	

     	

   





    

        
            
                XFF4834R
            
                
        
XFF4834R_chr20860 lcl|XFF4834R_chr22640642_2418166_r3_XFF4834R-XFF4834R_chr20860

        
11

	
140

	
S=103 I=26 E=4.71656e-06

	

     	

   





    

        
            
                XFF4834R
            
                
        
XFF4834R_chr20860 lcl|XFF4834R_chr22640642_2418166_r3_XFF4834R-XFF4834R_chr20860

        
3

	
52

	
S=97 I=41 E=2.69728e-05

	

     	

   





    

        
            
                XFF4834R
            
                
        
NP_642024.1 lcl|XAC1693-XAC1693

        
1

	
312

	
S=1404 I=87 E=4.96125e-163

	
glycosyl transferase

     	

   





    

        
            
                XFF4834R
            
                
        
YP_363457.1 lcl|XCV1726

        
1

	
291

	
S=928 I=65 E=1.95938e-105

	
glycosyltransferase

     	

   





    

        
            
                XFF4834R
            
                
        
NP_637043.1 lcl|XCC1673

        
7

	
291

	
S=876 I=62 E=4.1265e-99

	
glycosyl transferase

     	

   





    

        
            
                XFF4834R
            
                
        
NP_637293.1 lcl|rbfC-XCC1928

        
5

	
144

	
S=153 I=33 E=1.67474e-11

	
O-antigen biosynthesis protein

     	

   





    

        
            
                XFF4834R
            
                
        
NP_637293.1 lcl|rbfC-XCC1928

        
3

	
106

	
S=119 I=32 E=2.22563e-07

	
O-antigen biosynthesis protein

     	

   





    

        
            
                XFF4834R
            
                
        
 lcl|XALc_1398

        
10

	
121

	
S=153 I=39 E=1.84332e-11

	
putative glycosyltransferase protein

     	

   





    

        
            
                XFF4834R
            
                
        
NP_643419.2 lcl|XAC3110-XAC3110

        
6

	
121

	
S=149 I=34 E=4.60451e-11

	
glycosyltransferase

     	

   





    

        
            
                XFF4834R
            
                
        
YP_364973.1 lcl|XCV3242

        
6

	
121

	
S=147 I=34 E=8.47693e-11

	
glycosyltransferase

     	

   





    

        
            
                XFF4834R
            
                
        
 lcl|XALc_2250

        
10

	
122

	
S=146 I=37 E=1.10112e-10

	
putative glycosyl transferase protein

     	

   





    

        
            
                XFF4834R
            
                
        
NP_638281.2 lcl|XCC2933

        
6

	
169

	
S=143 I=31 E=3.02739e-10

	
glycosyl transferase

     	

   





    

        
            
                XFF4834R
            
                
        
NP_642137.1 lcl|hmsR-XAC1811

        
10

	
205

	
S=140 I=27 E=7.23967e-10

	
N-glycosyltransferase PgaC

     	

   





    

        Iprscan
        
	[G3DSA:3.90.550.10]
	
10

	
231

	
	
-

    





    

        Iprscan
        
	[PTHR22916]
	
18

	
229

	
	
-

    





    

        Iprscan
        IPR001173
	[PF00535]
	
13

	
125

	
	
Glycosyl transferase, family 2

    





    

        Iprscan
        
	[seg]
	
177

	
186

	
	
-

    





    

        Iprscan
        
	[SSF53448]
	
10

	
231

	
	
-

    




Show or not Suggestions
Suggest an annotation


Move your mouse over each field to get more informations


ID


DE


EC


GO


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CC


CL

 
  Your email  
 
  Validation code (copy this one nhXY5kKe)  
 
     



Show or not Access unfiltered results






    

       
            
                pubmed
            
        
	    
            
Set of Uniprot with relevant PubMed cross-references ncbi-blastp

        		
 	    
            227 hits
        
    

    

        
            
                swiss-prot
            
        
	    
            
Swiss-Prot ncbi-blastp

        		
 	    
            43 hits
        
    

    
    
    

        
            
                XFF4834R
            
        
    	
            
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp

        		        
        
            4 hits
        
    

        
    

        
            
                hamap
            
        
	
            
HAMAP scan

        		        
        
            0 hits
        
    

    
    

	    
            
                Interpro Scan
            
            
	        
                
IprScan

            		        
            
                5 hits
            
    








Show or not Miscellaneous analyses




    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetLocalBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBmELw4D/XFF4834R_chr28180.xml_fasta", "https://iant.toulouse.inra.fr/bacteria/annotation/web/img/XFF4834R.png"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    
    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetNcbiBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBmELw4D/XFF4834R_chr28180.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetUniprotBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBmELw4D/XFF4834R_chr28180.xml_fasta"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetKeggBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBmELw4D/XFF4834R_chr28180.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    

    






rmlD XFF4834R_chr34760




    

         
             
            XFF4834R_chr34750
            
XFF4834R_chr34750
            
        		


       
           
	   Cluster
	   
DrawMap
	   
        		
	
        
            XML file
        	


	    FASTA file
        		
	
	
             
            Extract
Sequence
            
        		
	
	
             
            Codon
Usage
            
        		
    
    
            
            Framed
            
     
  	



	
            OrthoMCL
            
    
  	
    
    
    

     


	
             
            XFF4834R_chr34770
            
XFF4834R_chr34770
            
        		

    





    

        ID
        rmlD
    

    

        AC
        XFF4834R_chr34760
    

    

        LT
        XFF4834R_chr34760
    

    

        OR
        XFF4834R_chr from 4032314 to 4033213 on strand -
    

   

        DE
        dTDP-4-dehydrorhamnose reductase
  

   

        IP
        dTDP-4-dehydrorhamnose reductase
  
  
  
  

        CL
        1.6.3.1 antigen	GO:0009243 
    

  

        EC
        
    

    
    

        GO
        
            InterPro
Biological Process: extracellular polysaccharide biosynthetic process (GO:0045226)
Biological Process: metabolic process (GO:0008152)
Molecular Function: dTDP-4-dehydrorhamnose reductase activity (GO:0008831)
Molecular Function: catalytic activity (GO:0003824)
Molecular Function: binding (GO:0005488)


            Curated

        		
    


  

        PM
        
    

  

        AN
        syn rfbD (old name)
    

  

        CC
        COG: [M] Cell wall/membrane/envelope biogenesis; 
    

    

        CC
        MODEL: XFF4834R 
  
    
  

        CC
        STATUS: curated by darrasse (20110127)
  

  
  


    

        MW
        32015.8 Da
    


    

        SQ
        299 aa
    

    

         
        
........10........20........30........40........50
         |         |         |         |         |
MTTLVIGASGQVGTELLRVLAPLGTVVAASRSGQLADGLSCERIDLNELA
SLDLALNRVRPALVVNAAAYTAVDRAEQERDAAFRANAEAPGVIAQWCAR
ADVPLVHYSTDYVFDGQGTRPYLPDDATAPLGVYGQSKLAGERAVQAAGG
RHLIFRTAWVYAAHGHNFLRTMLRVGAERDVLRVVADQIGTPTPAALIAD
ITAHALRQPGEPSGLWHLTAAGQTTWHGFAEAIFAQARARGLLARTPRVE
AIGTADYPTPAKRPAYSRLDTHSLQDTFGVRLPDWQDGLSQVLDTLAQR

    






    

        
            
                XFF4834R
            
                
        
XFF4834R_chr37960 lcl|XFF4834R_chr41040994_4385959_f2_XFF4834R-XFF4834R_chr37960

        
1

	
142

	
S=93 I=27 E=7.85814e-05

	

     	

   





    

        
            
                XFF4834R
            
                
        
NP_643889.1 lcl|rmlD-XAC3582

        
1

	
299

	
S=1370 I=89 E=6.22568e-159

	
dTDP-4-keto-L-rhamnose reductase

     	

   





    

        
            
                XFF4834R
            
                
        
YP_365437.1 lcl|rmlD-XCV3706

        
27

	
299

	
S=1260 I=89 E=1.33805e-145

	
dTDP-4-dehydrorhamnose reductase

     	

   





    

        
            
                XFF4834R
            
                
        
 lcl|rmlD-XALc_2694

        
1

	
299

	
S=1071 I=71 E=1.10255e-122

	
probable dtdp-4-dehydrorhamnose reductase protein

     	

   





    

        
            
                XFF4834R
            
                
        
NP_636016.1 lcl|rmlD-XCC0624

        
1

	
297

	
S=1030 I=69 E=8.90656e-118

	
dTDP-4-dehydrorhamnose reductase

     	

   





    

        
                pubmed
        
        

        
1

	
299

	
S=1067 I=72 E=1.34188e-120

	
DTDP-4-dehydrorhamnose reductase

	
Pubmed 16585771

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
1

	
297

	
S=1020 I=68 E=5.68148e-115

	
dTDP-4-dehydrorhamnose reductase EC=1.1.1.133 ; Oxidoreductase

	
Pubmed 8253667,1370280

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
1

	
293

	
S=684 I=49 E=3.45865e-74

	
dTDP-4-dehydrorhamnose reductase

	
Pubmed 17453174

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
1

	
296

	
S=679 I=47 E=1.09326e-73

	
RmlD

	
Pubmed 17449692

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
1

	
296

	
S=679 I=47 E=1.17224e-73

	
RmlD

	
Pubmed 16055280

    

    

         
        
prodomImg

    





    

        
            
                sp_Pdown
            
        
        
sp|P37778|RFBD_SHIFL

        
1

	
296

	
S=674 I=46 E=3.33426e-73

	
dTDP-4-dehydrorhamnose reductase EC=1.1.1.133 ; Lipopolysaccharide biosynthesis NADP Oxidoreductase

    





    

        
            
                sp_Pdown
            
        
        
sp|P37760|RFBD_ECOLI

        
1

	
296

	
S=664 I=46 E=5.15184e-72

	
dTDP-4-dehydrorhamnose reductase EC=1.1.1.133 ; Lipopolysaccharide biosynthesis NADP Oxidoreductase

    





    

        
            
                sp_Pdown
            
        
        
sp|P26392|RFBD_SALTY

        
1

	
296

	
S=639 I=45 E=5.51019e-69

	
dTDP-4-dehydrorhamnose reductase EC=1.1.1.133 ; Lipopolysaccharide biosynthesis NADP Oxidoreductase

    





    

        
            
                sp_Pdown
            
        
        
sp|Q46769|RFBD_ECOLX

        
1

	
296

	
S=632 I=45 E=4.62459e-68

	
dTDP-4-dehydrorhamnose reductase EC=1.1.1.133 ; Lipopolysaccharide biosynthesis NADP Oxidoreductase

    





    

        
            
                sp_Pdown
            
        
        
sp|P55463|RFBD_RHISN

        
61

	
293

	
S=487 I=43 E=1.41629e-50

	
Probable dTDP-4-dehydrorhamnose reductase EC=1.1.1.133 ; NADP Oxidoreductase Plasmid

    





    

        Iprscan
        IPR016040
	[G3DSA:3.40.50.720]
	
1

	
223

	
	
NAD(P)-binding domain

    





    

        Iprscan
        
	[PTHR10491]
	
1

	
298

	
	
-

    





    

        Iprscan
        IPR005913
	[PF04321]
	
1

	
297

	
	
dTDP-4-dehydrorhamnose reductase

    





    

        Iprscan
        IPR005913
	[TIGR01214]
	
2

	
296

	
	
dTDP-4-dehydrorhamnose reductase

    





    

        
            
                
            
                
        
PD158607

        
198

	
299

	
S=210 I=42 E=5.0172e-18

    	
    





    

        
            
                
            
                
        
PD576929

        
111

	
165

	
S=163 I=63 E=2.52893e-12

    	
    





    

        
            
                
            
                
        
PDA1W924

        
1

	
110

	
S=159 I=45 E=7.32641e-12

    	
    





    

        
            
                
            
                
        
PDA9G8K9

        
4

	
219

	
S=135 I=27 E=7.24464e-09

    	
    





    

        
            
                
            
                
        
PDA1E0R3

        
1

	
48

	
S=126 I=52 E=7.82947e-08

    	
    





    

        
            
                
            
                
        
PDA296X9

        
50

	
110

	
S=120 I=52 E=4.75926e-07

    	
    





    

        
            
                
            
                
        
PDA9J045

        
4

	
156

	
S=118 I=30 E=8.46152e-07

    	
    





    

        
            
                
            
                
        
PDA6R6O3

        
53

	
110

	
S=106 I=40 E=2.40695e-05

    	
    





    

        
            
                
            
                
        
PDA1Q157

        
32

	
110

	
S=102 I=33 E=6.85247e-05

    	
    





    

        Iprscan
        IPR016040
	[SSF51735]
	
1

	
299

	
	
NAD(P)-binding domain

    




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                pubmed
            
        
	    
            
Set of Uniprot with relevant PubMed cross-references ncbi-blastp

        		
 	    
            142 hits
        
    

    

        
            
                swiss-prot
            
        
	    
            
Swiss-Prot ncbi-blastp

        		
 	    
            15 hits
        
    

    
    
    

        
            
                XFF4834R
            
        
    	
            
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp

        		        
        
            1 hits
        
    

        
    

        
            
                hamap
            
        
	
            
HAMAP scan

        		        
        
            0 hits
        
    

    
    

	    
            
                Interpro Scan
            
            
	        
                
IprScan

            		        
            
                5 hits
            
    








Show or not Miscellaneous analyses




    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetLocalBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBmELw4D/XFF4834R_chr34760.xml_fasta", "https://iant.toulouse.inra.fr/bacteria/annotation/web/img/XFF4834R.png"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    
    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetNcbiBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBmELw4D/XFF4834R_chr34760.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetUniprotBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBmELw4D/XFF4834R_chr34760.xml_fasta"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetKeggBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBmELw4D/XFF4834R_chr34760.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    

    






rmlC XFF4834R_chr34770




    

         
             
            XFF4834R_chr34760
            
XFF4834R_chr34760
            
        		


       
           
	   Cluster
	   
DrawMap
	   
        		
	
        
            XML file
        	


	    FASTA file
        		
	
	
             
            Extract
Sequence
            
        		
	
	
             
            Codon
Usage
            
        		
    
    
            
            Framed
            
     
  	



	
            OrthoMCL
            
    
  	
    
    
    

     


	
             
            XFF4834R_chr34780
            
XFF4834R_chr34780
            
        		

    





    

        ID
        rmlC
    

    

        AC
        XFF4834R_chr34770
    

    

        LT
        XFF4834R_chr34770
    

    

        OR
        XFF4834R_chr from 4033210 to 4033767 on strand -
    

   

        DE
        dTDP-4-dehydrorhamnose 3,5-epimerase
  

   

        IP
        dTDP-4-dehydrorhamnose 3,5-epimerase related
  
  
  
  

        CL
        1.6.3.1 antigen	GO:0009243 
    

  

        EC
        
    

    
    

        GO
        
            InterPro
5-epimerase activity (GO:0008830)
Biological Process: lipopolysaccharide biosynthetic process (GO:0009103)


            Curated

        		
    


  

        PM
        
    

  

        AN
        syn rfbC (old name)
    

  

        CC
        COG: [M] Cell wall/membrane/envelope biogenesis; 
    

    

        CC
        MODEL: XFF4834R 
  
    
  

        CC
        STATUS: curated by darrasse (20110127)
  

  
  


    

        MW
        20843.2 Da
    


    

        SQ
        185 aa
    

    

         
        
........10........20........30........40........50
         |         |         |         |         |
MKVIDTSLPGCFVIEPRVLGDERGQFFEAWNAERFDQHGFSARFLQSNIS
TSTKGVLRGLHYQWPRPQGKLVSVLEGEVYDVAVDIRRGSPYFGQWTAAI
LSAENNRQFWIPEGFAHGFAVLSERAVFSYLCTDIYVHDADASVRWDDAT
IGVDWPISSPILSAKDRAAPFLEDIAEERLPVYQG

    





Show or not Domain decomposition
 

    

        
            
                XFF4834R
            
                
        
NP_643890.1 lcl|rmlC-XAC3583

        
1

	
183

	
S=809 I=79 E=3.12074e-91

	
dTDP-4-dehydrorhamnose 3,5-epimerase

     	

   





    

        
            
                XFF4834R
            
                
        
NP_636015.1 lcl|rmlC-XCC0623

        
1

	
184

	
S=789 I=77 E=7.00935e-89

	
dTDP-4-dehydrorhamnose 3,5-epimerase

     	

   





    

        
            
                XFF4834R
            
                
        
 lcl|rmlC-XALc_2695

        
1

	
184

	
S=787 I=79 E=1.21402e-88

	
probable dtdp-4-dehydrorhamnose 3,5-epimerase protein

     	

   





    

        
            
                XFF4834R
            
                
        
YP_365438.1 lcl|rmlC-XCV3707

        
1

	
183

	
S=773 I=76 E=6.35771e-87

	
dTDP-4-dehydrorhamnose 3,5-epimerase

     	

   





    

        
            
                XFF4834R
            
                
        
NP_637378.1 lcl|rfbD-XCC2013

        
6

	
170

	
S=321 I=40 E=3.72657e-32

	
strX protein

     	

   





    

        
                pubmed
        
        

        
1

	
184

	
S=789 I=77 E=2.66111e-87

	
dTDP-4-dehydrorhamnose 3,5-epimerase EC=5.1.3.13 ; Isomerase

	
Pubmed 8253667,11589581

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
1

	
183

	
S=749 I=73 E=1.98745e-82

	
DTDP-dehydrorhamnose 3,5-epimerase

	
Pubmed 16585771

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
18

	
163

	
S=614 I=75 E=4.60861e-66

	
RfbD

	
Pubmed 18424531

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
18

	
163

	
S=612 I=75 E=7.70857e-66

	
RfbD

	
Pubmed 18424531

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
18

	
163

	
S=610 I=75 E=1.31205e-65

	
RfbD

	
Pubmed 18424531

    

    

         
        
prodomImg

    





    

        
            
                sp_Pdown
            
        
        
sp|P26394|RFBC_SALTY

        
1

	
173

	
S=480 I=55 E=5.17157e-50

	
dTDP-4-dehydrorhamnose 3,5-epimerase EC=5.1.3.13 ; Isomerase Lipopolysaccharide biosynthesis

    





    

        
            
                sp_Pdown
            
        
        
sp|P37780|RFBC_SHIFL

        
1

	
166

	
S=470 I=53 E=9.68028e-49

	
dTDP-4-dehydrorhamnose 3,5-epimerase EC=5.1.3.13 ; Isomerase Lipopolysaccharide biosynthesis

    





    

        
            
                sp_Pdown
            
        
        
sp|P37763|RFBC_NEIGO

        
1

	
169

	
S=437 I=51 E=7.36302e-45

	
dTDP-4-dehydrorhamnose 3,5-epimerase EC=5.1.3.13 ; Isomerase Lipopolysaccharide biosynthesis

    





    

        
            
                sp_Pdown
            
        
        
sp|P37745|RFBC_ECOLI

        
1

	
180

	
S=403 I=46 E=1.18539e-40

	
dTDP-4-dehydrorhamnose 3,5-epimerase EC=5.1.3.13 ; Isomerase Lipopolysaccharide biosynthesis

    





    

        
            
                sp_Pdown
            
        
        
sp|P55468|RFBC_RHISN

        
13

	
175

	
S=348 I=43 E=5.19269e-34

	
Probable dTDP-4-dehydrorhamnose 3,5-epimerase EC=5.1.3.13 ; Isomerase Plasmid

    





    

        Iprscan
        IPR014710
	[G3DSA:2.60.120.10]
	
1

	
175

	
	
RmlC-like jelly roll fold

    





    

        Iprscan
        IPR000888
	[PTHR21047]
	
1

	
184

	
	
dTDP-4-dehydrorhamnose 3,5-epimerase related

    





    

        Iprscan
        IPR000888
	[PF00908]
	
4

	
174

	
	
dTDP-4-dehydrorhamnose 3,5-epimerase related

    





    

        Iprscan
        IPR000888
	[TIGR01221]
	
2

	
176

	
	
dTDP-4-dehydrorhamnose 3,5-epimerase related

    





    

        
            
                
            
                
        
PD001462

        
1

	
174

	
S=509 I=56 E=3.36029e-54

    	
    





    

        Iprscan
        IPR011051
	[SSF51182]
	
1

	
175

	
	
Cupin, RmlC-type

    




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Show or not Access unfiltered results






    

       
            
                pubmed
            
        
	    
            
Set of Uniprot with relevant PubMed cross-references ncbi-blastp

        		
 	    
            184 hits
        
    

    

        
            
                swiss-prot
            
        
	    
            
Swiss-Prot ncbi-blastp

        		
 	    
            8 hits
        
    

    
    
    

        
            
                XFF4834R
            
        
    	
            
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp

        		        
        
            0 hits
        
    

        
    

        
            
                hamap
            
        
	
            
HAMAP scan

        		        
        
            0 hits
        
    

    
    

	    
            
                Interpro Scan
            
            
	        
                
IprScan

            		        
            
                5 hits
            
    








Show or not Miscellaneous analyses




    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetLocalBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBmELw4D/XFF4834R_chr34770.xml_fasta", "https://iant.toulouse.inra.fr/bacteria/annotation/web/img/XFF4834R.png"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    
    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetNcbiBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBmELw4D/XFF4834R_chr34770.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetUniprotBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBmELw4D/XFF4834R_chr34770.xml_fasta"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetKeggBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBmELw4D/XFF4834R_chr34770.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    

    






rmlA XFF4834R_chr34780




    

         
             
            XFF4834R_chr34770
            
XFF4834R_chr34770
            
        		


       
           
	   Cluster
	   
DrawMap
	   
        		
	
        
            XML file
        	


	    FASTA file
        		
	
	
             
            Extract
Sequence
            
        		
	
	
             
            Codon
Usage
            
        		
    
    
            
            Framed
            
     
  	



	
            OrthoMCL
            
    
  	
    
    
    

     


	
             
            XFF4834R_chr34790
            
XFF4834R_chr34790
            
        		

    





    

        ID
        rmlA
    

    

        AC
        XFF4834R_chr34780
    

    

        LT
        XFF4834R_chr34780
    

    

        OR
        XFF4834R_chr from 4033764 to 4034651 on strand -
    

   

        DE
        glucose-1-phosphate thymidylyltransferase
  

   

        IP
        Glucose-1-phosphate thymidylyltransferase, long form
  
  
  
  

        CL
        1.6.3.1 antigen	GO:0009243 
    

  

        EC
        
    

    
    

        GO
        
            InterPro
Biological Process: extracellular polysaccharide biosynthetic process (GO:0045226)
Biological Process: biosynthetic process (GO:0009058)
Molecular Function: glucose-1-phosphate thymidylyltransferase activity (GO:0008879)
Molecular Function: nucleotidyltransferase activity (GO:0016779)


            Curated

        		
    


  

        PM
        
    

  

        AN
        syn rfbA (old name)
    

  

        CC
        COG: [M] Cell wall/membrane/envelope biogenesis; 
    

    

        CC
        MODEL: XFF4834R 
  
    
  

        CC
        STATUS: curated by darrasse (20110127)
  

  
  


    

        MW
        32971.3 Da
    


    

        SQ
        295 aa
    

    

         
        
........10........20........30........40........50
         |         |         |         |         |
MTQRKGIILAGGSGTRLYPITKGVSKQLLPVYDKPMIYYPLSVLMLAGIR
EVLIINTPHEQSLFQTLLGDGEQWGMHIRYAVQPSPDGLAQAYLIGRDFI
DGKPSCLVLGDNIFHGHGLTDTLRRADARQQGATVFGYWVNDPERYGVAE
FDAQGKVIDIEEKPLQPRSNYAVTGLYFYDARACEYAAQLKPSSRGELEI
TDLNRRYLEAGDLHLEPLGRGYAWLDTGTHQSLHEASNFIETIQMRQGLQ
VCCPEEIAFAKGWIDAFQLEQLAAPLRKNAYGQYLHSLAQRGVVP

    





Show or not Domain decomposition
 

    

        
            
                XFF4834R
            
                
        
XFF4834R_chr22950 lcl|galU-XFF4834R_chr22950

        
4

	
237

	
S=141 I=26 E=1.34408e-10

	
glucose-1-phosphate uridylyltransferase

     	

   





    

        
            
                XFF4834R
            
                
        
XFF4834R_chr16850 lcl|XFF4834R_chr18040300_1936010_r2_XFF4834R-XFF4834R_chr16850

        
5

	
111

	
S=115 I=31 E=1.91684e-07

	

     	

   





    

        
            
                XFF4834R
            
                
        
 lcl|rmlA-XALc_2696

        
1

	
295

	
S=1418 I=89 E=8.78514e-165

	
probable glucose-1-phosphate thymidylyltransferase protein

     	

   





    

        
            
                XFF4834R
            
                
        
NP_643891.1 lcl|rmlA-XAC3584

        
1

	
295

	
S=1411 I=88 E=6.75758e-164

	
glucose-1-phosphate thymidylyltransferase

     	

   





    

        
            
                XFF4834R
            
                
        
YP_365439.1 lcl|rmlA-XCV3708

        
1

	
294

	
S=1403 I=88 E=5.77127e-163

	
glucose-1-phosphate thymidylyltransferase

     	

   





    

        
            
                XFF4834R
            
                
        
NP_636014.1 lcl|rmlA-XCC0622

        
1

	
294

	
S=1389 I=88 E=2.79426e-161

	
glucose-1-phosphate thymidylyltransferase

     	

   





    

        
            
                XFF4834R
            
                
        
NP_637544.1 lcl|galU-XCC2188

        
4

	
237

	
S=156 I=27 E=6.9634e-12

	
UTP-glucose-1-phosphate uridylyltransferase

     	

   





    

        
            
                XFF4834R
            
                
        
NP_642609.1 lcl|galU-XAC2292

        
4

	
237

	
S=144 I=26 E=2.21852e-10

	
UTP-glucose-1-phosphate uridylyltransferase

     	

   





    

        
            
                XFF4834R
            
                
        
YP_364221.1 lcl|galU-XCV2490

        
4

	
237

	
S=142 I=26 E=3.25589e-10

	
UTP-glucose-1-phosphate uridylyltransferase

     	

   





    

        
            
                XFF4834R
            
                
        
 lcl|XALc_2122

        
5

	
111

	
S=132 I=37 E=5.83449e-09

	
putative nucleotidyl transferase protein

     	

   





    

        
            
                XFF4834R
            
                
        
 lcl|galU-XALc_1596

        
4

	
237

	
S=129 I=26 E=1.33574e-08

	
probable utp-glucose-1-phosphate uridylyltransferase protein

     	

   





    

        
            
                XFF4834R
            
                
        
NP_638133.1 lcl|glgC-XCC2785

        
5

	
111

	
S=126 I=34 E=3.39529e-08

	
nucleotidyl transferase

     	

   





    

        
            
                XFF4834R
            
                
        
YP_364831.1 lcl|XCV3100

        
5

	
111

	
S=120 I=32 E=1.4948e-07

	
putative nucleotidyltransferase

     	

   





    

        
            
                XFF4834R
            
                
        
NP_643264.1 lcl|XAC2955-XAC2955

        
5

	
111

	
S=120 I=32 E=1.56141e-07

	
nucleotidyl transferase

     	

   





    

        
                pubmed
        
        

        
1

	
294

	
S=1389 I=88 E=1.14153e-159

	
Glucose-1-phosphate thymidylyltransferase EC=2.7.7.24 ; Lipopolysaccharide biosynthesis Magnesium Metal-binding Nucleotidyltransferase

	
Pubmed 8253667

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
1

	
294

	
S=1357 I=86 E=9.39144e-156

	
Glucose-1-phosphate thymidylyltransferase EC=2.7.7.24 ; Magnesium Metal-binding Nucleotidyltransferase

	
Pubmed 16585771

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
4

	
288

	
S=1077 I=70 E=8.36635e-122

	
Glucose-1-phosphate thymidylyltransferase EC=2.7.7.24 ; Magnesium Metal-binding Nucleotidyltransferase

	
Pubmed 9988483

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
5

	
295

	
S=1071 I=67 E=3.91514e-121

	
Glucose-1-phosphate thymidylyltransferase EC=2.7.7.24 ; Magnesium Metal-binding Nucleotidyltransferase

	
Pubmed 15073305

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
1

	
290

	
S=1068 I=68 E=8.00278e-121

	
Glucose-1-phosphate thymidylyltransferase EC=2.7.7.24 ; Magnesium Metal-binding Nucleotidyltransferase

	
Pubmed 19040662

    

    

         
        
prodomImg

    





    

        
            
                sp_Pdown
            
        
        
sp|P0C7J4|RMLA_XANCP

        
1

	
294

	
S=1389 I=88 E=7.77261e-160

	
Glucose-1-phosphate thymidylyltransferase EC=2.7.7.24 ; Lipopolysaccharide biosynthesis Magnesium Metal-binding Nucleotidyltransferase

    





    

        
            
                sp_Pdown
            
        
        
sp|B0RVK9|RMLA_XANCB

        
1

	
294

	
S=1389 I=88 E=7.77261e-160

	
Glucose-1-phosphate thymidylyltransferase EC=2.7.7.24 ; Lipopolysaccharide biosynthesis Magnesium Metal-binding Nucleotidyltransferase

    





    

        
            
                sp_Pdown
            
        
        
sp|P55254|RMLA_SALAN

        
1

	
290

	
S=1065 I=68 E=1.39722e-120

	
Glucose-1-phosphate thymidylyltransferase EC=2.7.7.24 ; Lipopolysaccharide biosynthesis Magnesium Metal-binding Nucleotidyltransferase

    





    

        
            
                sp_Pdown
            
        
        
sp|P37744|RMLA1_ECOLI

        
1

	
290

	
S=1063 I=68 E=2.33705e-120

	
Glucose-1-phosphate thymidylyltransferase 1 EC=2.7.7.24 ; Lipopolysaccharide biosynthesis Magnesium Metal-binding Nucleotidyltransferase

    





    

        
            
                sp_Pdown
            
        
        
sp|P55253|RMLA3_ECOLX

        
1

	
290

	
S=1057 I=68 E=1.20373e-119

	
Glucose-1-phosphate thymidylyltransferase EC=2.7.7.24 ; Lipopolysaccharide biosynthesis Magnesium Metal-binding Nucleotidyltransferase

    





    

        Iprscan
        
	[G3DSA:3.90.550.10]
	
5

	
294

	
	
-

    





    

        Iprscan
        
	[PTHR22572:SF13]
	
12

	
289

	
	
-

    





    

        Iprscan
        
	[PTHR22572]
	
12

	
289

	
	
-

    





    

        Iprscan
        IPR005835
	[PF00483]
	
5

	
241

	
	
Nucleotidyl transferase

    





    

        Iprscan
        IPR005907
	[TIGR01207]
	
5

	
290

	
	
Glucose-1-phosphate thymidylyltransferase, long form

    





    

        
            
                
            
                
        
PD001252

        
7

	
293

	
S=475 I=40 E=4.64042e-50

    	
    





    

        
            
                
            
                
        
PDA95123

        
5

	
80

	
S=120 I=38 E=5.56705e-07

    	
    





    

        
            
                
            
                
        
PDA036R5

        
1

	
114

	
S=102 I=25 E=6.67446e-05

    	
    





    

        Iprscan
        
	[SSF53448]
	
4

	
294

	
	
-

    




Show or not Suggestions
Suggest an annotation


Move your mouse over each field to get more informations


ID


DE


EC


GO


PM



CC


CL

 
  Your email  
 
  Validation code (copy this one 0h7KyT9l)  
 
     



Show or not Access unfiltered results






    

       
            
                pubmed
            
        
	    
            
Set of Uniprot with relevant PubMed cross-references ncbi-blastp

        		
 	    
            293 hits
        
    

    

        
            
                swiss-prot
            
        
	    
            
Swiss-Prot ncbi-blastp

        		
 	    
            165 hits
        
    

    
    
    

        
            
                XFF4834R
            
        
    	
            
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp

        		        
        
            2 hits
        
    

        
    

        
            
                hamap
            
        
	
            
HAMAP scan

        		        
        
            0 hits
        
    

    
    

	    
            
                Interpro Scan
            
            
	        
                
IprScan

            		        
            
                6 hits
            
    








Show or not Miscellaneous analyses




    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetLocalBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBmELw4D/XFF4834R_chr34780.xml_fasta", "https://iant.toulouse.inra.fr/bacteria/annotation/web/img/XFF4834R.png"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    
    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetNcbiBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBmELw4D/XFF4834R_chr34780.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetUniprotBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBmELw4D/XFF4834R_chr34780.xml_fasta"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetKeggBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBmELw4D/XFF4834R_chr34780.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    

    






rmlB XFF4834R_chr34790




    

         
             
            XFF4834R_chr34780
            
XFF4834R_chr34780
            
        		


       
           
	   Cluster
	   
DrawMap
	   
        		
	
        
            XML file
        	


	    FASTA file
        		
	
	
             
            Extract
Sequence
            
        		
	
	
             
            Codon
Usage
            
        		
    
    
            
            Framed
            
     
  	



	
            OrthoMCL
            
    
  	
    
    
    

     


	
             
            XFF4834R_chr_3697
            
XFF4834R_chr_3697
            
        		

    





    

        ID
        rmlB
    

    

        AC
        XFF4834R_chr34790
    

    

        LT
        XFF4834R_chr34790
    

    

        OR
        XFF4834R_chr from 4034703 to 4035758 on strand -
    

   

        DE
        dTDP-glucose 4,6-dehydratase
  

   

        IP
        NAD-dependent epimerase/dehydratase
  
  
  
  

        CL
        1.6.3.1 antigen	GO:0009243 
    

  

        EC
        
    

    
    

        GO
        
            InterPro
6-dehydratase activity (GO:0008460)
Biological Process: metabolic process (GO:0008152)
Biological Process: cellular metabolic process (GO:0044237)
Biological Process: nucleotide-sugar metabolic process (GO:0009225)
Molecular Function: coenzyme binding (GO:0050662)
Molecular Function: binding (GO:0005488)
Molecular Function: catalytic activity (GO:0003824)


            Curated

        		
    


  

        PM
        
    

  

        AN
        start change : alternative codon Val located 6 aa before the initial start which is also a Val (but it is coded as a M on the initial sequence and multialign) syn rfbB (old name)
    

  

        CC
        COG: [M] Cell wall/membrane/envelope biogenesis; 
    

    

        CC
        MODEL: XFF4834R 
  
    
  

        CC
        STATUS: curated by darrasse (20110127)
  

  
  


    

        MW
        38477 Da
    


    

        SQ
        351 aa
    

    

         
        
........10........20........30........40........50
         |         |         |         |         |
VATWLVTGGAGFIGGNFVLEAVARGVRVINLDALTYAGNLKTLASLEDNP
NHVFVKGNIGDGALVDRLLAEHQPDAVLNFAAESHVDRSIDGPGAFIQTN
VVGTLALLESVRDYWKALPQESRHAFRFLHVSTDEVYGTLGETGKFTETT
PYAPNSPYSASKAASDHLVRAFHHTYGLPVLTTNCSNNYGPYHFPEKLIP
LVIAKALAGEPLPVYGDGKQVRDWLFVSDHCDAIRTVLAKGRVGETYNVG
GNAERQNIEVVRTICALLDQQRPRSDGQLRASQITHVTDRPGHDRRYAID
ASKLRNELGWQPAYTFEQGIALTVQWYLDNQAWVQGVLDGSYRLERIGVA
A

    






    

        
            
                XFF4834R
            
                
        
XFF4834R_chr37960 lcl|XFF4834R_chr41040994_4385959_f2_XFF4834R-XFF4834R_chr37960

        
3

	
326

	
S=232 I=29 E=1.25965e-21

	

     	

   





    

        
            
                XFF4834R
            
                
        
XFF4834R_chr34900 lcl|gmd-XFF4834R_chr34900

        
5

	
325

	
S=162 I=24 E=4.42989e-13

	
GDP-D-mannose dehydratase, NAD(P)-binding

     	

   





    

        
            
                XFF4834R
            
                
        
XFF4834R_chr36310 lcl|galE-XFF4834R_chr36310

        
5

	
250

	
S=142 I=30 E=1.07619e-10

	
UDP-galactose-4-epimerase

     	

   





    

        
            
                XFF4834R
            
                
        
YP_365440.1 lcl|rmlB-XCV3709

        
1

	
351

	
S=1709 I=91 E=0

	
dTDP-glucose 4,6-dehydratase

     	

   





    

        
            
                XFF4834R
            
                
        
NP_643892.1 lcl|rmlB-XAC3585

        
1

	
351

	
S=1696 I=90 E=0

	
dTDP-glucose 4,6-dehydratase

     	

   





    

        
            
                XFF4834R
            
                
        
NP_636013.1 lcl|rmlB-XCC0621

        
1

	
348

	
S=1676 I=89 E=0

	
dTDP-glucose 4,6-dehydratase

     	

   





    

        
            
                XFF4834R
            
                
        
 lcl|rmlB-XALc_2697

        
1

	
351

	
S=1657 I=88 E=0

	
probable dtdp-glucose 4,6-dehydratase protein

     	

   





    

        
            
                XFF4834R
            
                
        
 lcl|rmd-XALc_2707

        
5

	
331

	
S=248 I=29 E=5.38248e-23

	
probable ndp-hexose oxidoreductase protein

     	

   





    

        
            
                XFF4834R
            
                
        
YP_365752.1 lcl|wbnF-XCV4021

        
3

	
326

	
S=242 I=28 E=3.66449e-22

	
nucleotide sugar epimerase

     	

   





    

        
            
                XFF4834R
            
                
        
NP_639193.1 lcl|wbnF-XCC3853

        
3

	
326

	
S=235 I=29 E=2.45172e-21

	
nucleotide sugar epimerase

     	

   





    

        
            
                XFF4834R
            
                
        
NP_644209.1 lcl|wbnF-XAC3908

        
3

	
326

	
S=233 I=29 E=4.39711e-21

	
nucleotide sugar epimerase

     	

   





    

        
            
                XFF4834R
            
                
        
 lcl|gla-XALc_0106

        
3

	
329

	
S=229 I=26 E=1.38991e-20

	
putative nucleoside-diphosphate-sugar epimerases protein

     	

   





    

        
            
                XFF4834R
            
                
        
 lcl|gmd-XALc_2706

        
5

	
324

	
S=169 I=24 E=2.4354e-13

	
probable gdp-mannose 4,6-dehydratase protein

     	

   





    

        
            
                XFF4834R
            
                
        
YP_365449.1 lcl|gmd-XCV3718

        
5

	
325

	
S=149 I=24 E=6.34396e-11

	
GDP-mannose 4,6-dehydratase

     	

   





    

        
            
                XFF4834R
            
                
        
NP_644047.1 lcl|XAC3740-XAC3740

        
5

	
250

	
S=143 I=30 E=2.94297e-10

	
UDP-glucose 4-epimerase

     	

   





    

        
            
                XFF4834R
            
                
        
NP_635998.1 lcl|XCC0606

        
1

	
238

	
S=142 I=25 E=3.78961e-10

	
GDP-mannose 4,6 dehydratase

     	

   





    

        
            
                XFF4834R
            
                
        
YP_365590.1 lcl|galE-XCV3859

        
5

	
250

	
S=141 I=30 E=6.45016e-10

	
UDP-glucose 4-epimerase

     	

   





    

        
            
                XFF4834R
            
                
        
NP_639042.1 lcl|XCC3696

        
5

	
338

	
S=133 I=27 E=5.4135e-09

	
UDP-glucose 4-epimerase