10 hits
XFF4834R_chr11810 | XFF4834R_chr12360840_1325129_f3_XFF4834R-XFF4834R_chr11810 | XFF4834R_chr11810 | Putative lipid a core-o-antigen ligase protein |
XFF4834R_chr15940 | gtrB | XFF4834R_chr15940 | putative bactoprenol glucosyl transferase |
XFF4834R_chr22970 | XFF4834R_chr25090466_2663434_r3_XFF4834R-XFF4834R_chr22970 | XFF4834R_chr22970 | putative glycosyl transferase |
XFF4834R_chr28180 | XFF4834R_chr30730560_3250498_r3_XFF4834R-XFF4834R_chr28180 | XFF4834R_chr28180 | putative glycosyltransferase |
XFF4834R_chr34760 | rmlD | XFF4834R_chr34760 | dTDP-4-dehydrorhamnose reductase |
XFF4834R_chr34770 | rmlC | XFF4834R_chr34770 | dTDP-4-dehydrorhamnose 3,5-epimerase |
XFF4834R_chr34780 | rmlA | XFF4834R_chr34780 | glucose-1-phosphate thymidylyltransferase |
XFF4834R_chr34790 | rmlB | XFF4834R_chr34790 | dTDP-glucose 4,6-dehydratase |
XFF4834R_chr34920 | wxcB | XFF4834R_chr34920 | LPS O-antigen biosynthesis tyrosine kinase |
XFF4834R_chr36890 | XFF4834R_chr_4266503_4267714_r3_XFF4834R-XFF4834R_chr36890 | XFF4834R_chr36890 | putative O-antigen ligase |
![]() XFF4834R_chr11800 |
![]() DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
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![]() XFF4834R_chr11820 |
ID | XFF4834R_chr12360840_1325129_f3_XFF4834R-XFF4834R_chr11810 |
AC | XFF4834R_chr11810 |
LT | XFF4834R_chr11810 |
OR | XFF4834R_chr from 1323840 to 1325129 on strand + |
DE | Putative lipid a core-o-antigen ligase protein |
IP | O-antigen ligase-related |
CL | 1.6.3.1 antigen GO:0009243 |
EC | |
GO |
InterPro Curated |
PM | |
AN | |
CC | COG: [M] Cell wall/membrane/envelope biogenesis; |
CC | MODEL: XFF4834R |
CC | STATUS: curated by opruvost (20100827) |
MW | 45884.2 Da |
SQ | 429 aa |
........10........20........30........40........50 |
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NP_643773.1 XAC3466-XAC3466 |
1 |
404 |
S=1615 I=81 E=0 |
membrane protein |
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YP_365325.1 waaL-XCV3594 |
1 |
404 |
S=1594 I=80 E=0 |
Lipid A core-O-antigen ligase |
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NP_638685.1 XCC3339 |
1 |
404 |
S=1467 I=75 E=1.63216e-170 |
membrane protein |
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XALc_0744 waaL-XALc_0744 |
1 |
404 |
S=1050 I=53 E=4.69601e-120 |
probable lipid a core-o-antigen ligase protein |
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IPR007016 [PF04932] | 207 |
358 |
O-antigen ligase-related |
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[seg] | 184 |
195 |
- |
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[seg] | 200 |
218 |
- |
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[seg] | 237 |
261 |
- |
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[seg] | 353 |
369 |
- |
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[seg] | 405 |
425 |
- |
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[SignalP-NN(euk)] | 1 |
26 |
- |
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[tmhmm] | 13 |
35 |
- |
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[tmhmm] | 48 |
70 |
- |
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[tmhmm] | 90 |
109 |
- |
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[tmhmm] | 116 |
138 |
- |
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[tmhmm] | 200 |
217 |
- |
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[tmhmm] | 222 |
239 |
- |
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[tmhmm] | 243 |
262 |
- |
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[tmhmm] | 341 |
363 |
- |
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[tmhmm] | 397 |
419 |
- |
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62 |
275 |
S=675 I=67 E=2.89081e-74 |
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1 |
61 |
S=279 I=89 E=2.35324e-26 |
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288 |
352 |
S=155 I=48 E=2.4702e-11 |
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262 |
286 |
S=128 I=100 E=5.49544e-08 |
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262 |
286 |
S=114 I=88 E=2.75514e-06 |
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383 |
404 |
S=114 I=100 E=2.85292e-06 |
Access unfiltered results
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Set of Uniprot with relevant PubMed cross-references ncbi-blastp |
0 hits |
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Swiss-Prot ncbi-blastp |
0 hits |
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Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp |
0 hits |
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HAMAP scan |
0 hits |
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IprScan |
16 hits |
Miscellaneous analyses
![]() XFF4834R_chr15930 |
![]() DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
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![]() XFF4834R_chr15950 |
ID | gtrB |
AC | XFF4834R_chr15940 |
LT | XFF4834R_chr15940 |
OR | XFF4834R_chr from 1840068 to 1841114 on strand + |
DE | putative bactoprenol glucosyl transferase |
IP | Glycosyl transferase, family 2 |
CL | 1.6.3.1 antigen GO:0009243 |
EC | |
GO |
InterPro Curated |
PM | |
AN | 38 % identity E. Coli : Putative Bactoprenol glucosyl transferase homolog from prophage CPS-53 CL : modification of O antigen |
CC | COG: [M] Cell wall/membrane/envelope biogenesis; |
CC | MODEL: XFF4834R |
CC | STATUS: curated by irobene (20100429) |
MW | 38113.6 Da |
SQ | 348 aa |
........10........20........30........40........50 |
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XFF4834R_chr34830 lcl|XFF4834R_chr37970548_4039504_f2_XFF4834R-XFF4834R_chr34830 |
16 |
311 |
S=232 I=26 E=1.39577e-21 |
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XFF4834R_chr37970 lcl|XFF4834R_chr41060322_4387044_f1_XFF4834R-XFF4834R_chr37970 |
15 |
220 |
S=160 I=26 E=7.59068e-13 |
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XFF4834R_chr19410 lcl|pgaC-XFF4834R_chr19410 |
10 |
114 |
S=96 I=30 E=3.98992e-05 |
predicted glycosyl transferase |
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XFF4834R_chr34830 lcl|XFF4834R_chr37970548_4039504_f2_XFF4834R-XFF4834R_chr34830 |
16 |
311 |
S=232 I=26 E=1.39577e-21 |
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XFF4834R_chr37970 lcl|XFF4834R_chr41060322_4387044_f1_XFF4834R-XFF4834R_chr37970 |
15 |
220 |
S=160 I=26 E=7.59068e-13 |
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XFF4834R_chr19410 lcl|pgaC-XFF4834R_chr19410 |
10 |
114 |
S=96 I=30 E=3.98992e-05 |
predicted glycosyl transferase |
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YP_364914.1 lcl|gtrB-XCV3183 |
1 |
348 |
S=1649 I=92 E=0 |
putative bactoprenol glucosyltransferase |
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NP_643355.1 lcl|gtrB-XAC3046 |
9 |
348 |
S=1632 I=93 E=0 |
glucosyl transferase |
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NP_638211.1 lcl|gtrB-XCC2863 |
10 |
348 |
S=1446 I=82 E=3.84704e-168 |
glucosyl transferase |
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10 |
348 |
S=1134 I=66 E=3.10333e-130 |
putative glycosyltransferase protein |
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YP_365444.1 lcl|wxcL-XCV3713 |
49 |
317 |
S=203 I=25 E=1.70305e-17 |
glycosyltransferase |
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16 |
317 |
S=192 I=25 E=3.44804e-16 |
probable glycosyl transferase protein |
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NP_636008.1 lcl|wxcL-XCC0616 |
49 |
317 |
S=185 I=25 E=2.97057e-15 |
glycosyltransferase |
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NP_644210.1 lcl|dpm1-XAC3909 |
15 |
220 |
S=159 I=26 E=3.65281e-12 |
dolichol-phosphate mannosyltransferase |
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16 |
220 |
S=157 I=27 E=6.72486e-12 |
putative glycosyl transferase protein |
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YP_365753.1 lcl|XCV4022 |
15 |
220 |
S=157 I=27 E=7.0245e-12 |
putative glycosyltransferase |
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NP_639194.1 lcl|dpm1-XCC3854 |
15 |
238 |
S=152 I=28 E=2.29922e-11 |
dolichol-phosphate mannosyltransferase |
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16 |
315 |
S=806 I=51 E=5.42815e-89 |
Glycosyl transferase, family 2 Putative polymixin resistance glycosyltransferase transmembrane protein ; Plasmid |
||
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13 |
326 |
S=770 I=51 E=1.37517e-84 |
Glycosyl transferase, family 2 Putative polymixin resistance glycosyltransferase ; Plasmid |
||
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15 |
320 |
S=642 I=40 E=4.29275e-69 |
GtrB |
Pubmed 15963704 |
|
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15 |
320 |
S=638 I=40 E=1.31041e-68 |
Bactoprenol glucosyl transferase EC=2.4.1.- ; Glycosyltransferase Membrane Transmembrane |
Pubmed 9426131 |
|
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15 |
319 |
S=635 I=39 E=2.72568e-68 |
Bactoprenol glucosyl transferase EC=2.4.1.- ; Glycosyltransferase Membrane Transmembrane |
Pubmed 10376843 |
|
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15 |
319 |
S=634 I=39 E=4.07056e-68 |
Bactoprenol glucosyl transferase EC=2.4.1.- ; Glycosyltransferase Membrane Transmembrane |
||
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15 |
315 |
S=630 I=39 E=1.07141e-67 |
GtrB |
Pubmed 15071057 |
|
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15 |
315 |
S=630 I=39 E=1.07141e-67 |
O-antigen conversion protein |
Pubmed 18621868 |
|
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15 |
315 |
S=630 I=39 E=1.24259e-67 |
GtrB |
Pubmed 12754248 |
|
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15 |
315 |
S=629 I=39 E=1.54522e-67 |
GtrB |
Pubmed 12562822 |
|
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15 |
315 |
S=752 I=48 E=1.19603e-82 |
Uncharacterized glycosyltransferase sll0501 EC=2.4.-.- ; Cell membrane Transmembrane |
||
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15 |
320 |
S=638 I=40 E=9.0216e-69 |
SfII prophage-derived bactoprenol glucosyl transferase EC=2.4.1.- ; Cell membrane Glycosyltransferase Transmembrane |
||
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15 |
320 |
S=638 I=40 E=9.0216e-69 |
Bactoprenol glucosyl transferase EC=2.4.1.- ; Glycosyltransferase Membrane Transmembrane |
||
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15 |
319 |
S=635 I=39 E=1.87651e-68 |
Bactoprenol glucosyl transferase EC=2.4.1.- ; Glycosyltransferase Membrane Transmembrane |
||
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15 |
319 |
S=634 I=39 E=2.80239e-68 |
Bactoprenol glucosyl transferase EC=2.4.1.- ; Glycosyltransferase Membrane Transmembrane |
||
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176 |
239 |
S=235 I=67 E=6.02559e-21 |
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260 |
315 |
S=195 I=58 E=3.37502e-16 |
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319 |
348 |
S=150 I=97 E=1.20031e-10 |
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137 |
172 |
S=141 I=69 E=1.47845e-09 |
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109 |
172 |
S=132 I=39 E=1.45168e-08 |
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15 |
83 |
S=114 I=38 E=2.12692e-06 |
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123 |
172 |
S=111 I=34 E=5.74663e-06 |
Access unfiltered results
![]() |
Set of Uniprot with relevant PubMed cross-references ncbi-blastp |
43 hits |
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Swiss-Prot ncbi-blastp |
73 hits |
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Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp |
3 hits |
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HAMAP scan |
0 hits |
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IprScan |
0 hits |
Miscellaneous analyses
![]() XFF4834R_chr22960 |
![]() DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
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![]() XFF4834R_chr22980 |
ID | XFF4834R_chr25090466_2663434_r3_XFF4834R-XFF4834R_chr22970 |
AC | XFF4834R_chr22970 |
LT | XFF4834R_chr22970 |
OR | XFF4834R_chr from 2662466 to 2663434 on strand - |
DE | putative glycosyl transferase |
IP | Glycosyl transferase, family 4 |
CL | 1.6.3.1 antigen GO:0009243 |
EC | |
GO |
InterPro Cellular Component: integral to membrane (GO:0016021) Molecular Function: phospho-N-acetylmuramoyl-pentapeptide-transferase activity (GO:0008963) Curated |
PM | |
AN | |
CC | COG: [M] Cell wall/membrane/envelope biogenesis; |
CC | MODEL: XFF4834R |
CC | STATUS: curated by irobene (20100521) |
MW | 34931.7 Da |
SQ | 322 aa |
........10........20........30........40........50 |
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NP_642611.1 lcl|rfb303-XAC2294 |
1 |
322 |
S=1320 I=83 E=7.52781e-153 |
lipopolysaccharide core biosynthesis protein |
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YP_364223.1 lcl|XCV2492 |
1 |
322 |
S=1247 I=81 E=4.70674e-144 |
glycosyltransferase |
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NP_637546.1 lcl|rfb303-XCC2190 |
2 |
322 |
S=950 I=64 E=5.25107e-108 |
lipopolysaccharide core biosynthesis protein |
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12 |
320 |
S=581 I=43 E=2.72324e-63 |
putative glycosyl transferase protein |
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IPR000715 [PTHR22926] | 21 |
319 |
Glycosyl transferase, family 4 |
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IPR018481 [PF00953] | 75 |
210 |
Glycosyl transferase, family 4, conserved region |
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[seg] | 77 |
87 |
- |
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[seg] | 163 |
178 |
- |
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[seg] | 197 |
217 |
- |
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[SignalP-NN(euk)] | 1 |
19 |
- |
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[tmhmm] | 2 |
24 |
- |
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[tmhmm] | 44 |
66 |
- |
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[tmhmm] | 71 |
89 |
- |
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[tmhmm] | 120 |
142 |
- |
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[tmhmm] | 155 |
177 |
- |
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[tmhmm] | 192 |
214 |
- |
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[tmhmm] | 221 |
243 |
- |
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[tmhmm] | 267 |
289 |
- |
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[tmhmm] | 294 |
316 |
- |
Access unfiltered results
![]() |
Set of Uniprot with relevant PubMed cross-references ncbi-blastp |
15 hits |
![]() |
Swiss-Prot ncbi-blastp |
1 hits |
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Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp |
0 hits |
![]() |
HAMAP scan |
0 hits |
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IprScan |
15 hits |
Miscellaneous analyses
![]() XFF4834R_chr28170 |
![]() DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
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![]() XFF4834R_chr28190 |
ID | XFF4834R_chr30730560_3250498_r3_XFF4834R-XFF4834R_chr28180 |
AC | XFF4834R_chr28180 |
LT | XFF4834R_chr28180 |
OR | XFF4834R_chr from 3249560 to 3250498 on strand - |
DE | putative glycosyltransferase |
IP | Glycosyl transferase, family 2 |
CL | 1.6.3.1 antigen GO:0009243 |
EC | |
GO |
InterPro Curated |
PM | |
AN | |
CC | COG: [M] Cell wall/membrane/envelope biogenesis; |
CC | MODEL: XFF4834R |
CC | STATUS: curated by irobene (20100622) |
MW | 35045.7 Da |
SQ | 312 aa |
........10........20........30........40........50 |
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XFF4834R_chr19410 lcl|pgaC-XFF4834R_chr19410 |
10 |
205 |
S=137 I=27 E=4.18856e-10 |
predicted glycosyl transferase |
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XFF4834R_chr15220 lcl|XFF4834R_chr16320014_1748098_r3_XFF4834R-XFF4834R_chr15220 |
6 |
121 |
S=134 I=32 E=1.01042e-09 |
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XFF4834R_chr20860 lcl|XFF4834R_chr22640642_2418166_r3_XFF4834R-XFF4834R_chr20860 |
11 |
140 |
S=103 I=26 E=4.71656e-06 |
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XFF4834R_chr20860 lcl|XFF4834R_chr22640642_2418166_r3_XFF4834R-XFF4834R_chr20860 |
3 |
52 |
S=97 I=41 E=2.69728e-05 |
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NP_642024.1 lcl|XAC1693-XAC1693 |
1 |
312 |
S=1404 I=87 E=4.96125e-163 |
glycosyl transferase |
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YP_363457.1 lcl|XCV1726 |
1 |
291 |
S=928 I=65 E=1.95938e-105 |
glycosyltransferase |
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NP_637043.1 lcl|XCC1673 |
7 |
291 |
S=876 I=62 E=4.1265e-99 |
glycosyl transferase |
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NP_637293.1 lcl|rbfC-XCC1928 |
5 |
144 |
S=153 I=33 E=1.67474e-11 |
O-antigen biosynthesis protein |
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NP_637293.1 lcl|rbfC-XCC1928 |
3 |
106 |
S=119 I=32 E=2.22563e-07 |
O-antigen biosynthesis protein |
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10 |
121 |
S=153 I=39 E=1.84332e-11 |
putative glycosyltransferase protein |
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NP_643419.2 lcl|XAC3110-XAC3110 |
6 |
121 |
S=149 I=34 E=4.60451e-11 |
glycosyltransferase |
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YP_364973.1 lcl|XCV3242 |
6 |
121 |
S=147 I=34 E=8.47693e-11 |
glycosyltransferase |
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10 |
122 |
S=146 I=37 E=1.10112e-10 |
putative glycosyl transferase protein |
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NP_638281.2 lcl|XCC2933 |
6 |
169 |
S=143 I=31 E=3.02739e-10 |
glycosyl transferase |
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NP_642137.1 lcl|hmsR-XAC1811 |
10 |
205 |
S=140 I=27 E=7.23967e-10 |
N-glycosyltransferase PgaC |
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[G3DSA:3.90.550.10] | 10 |
231 |
- |
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[PTHR22916] | 18 |
229 |
- |
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IPR001173 [PF00535] | 13 |
125 |
Glycosyl transferase, family 2 |
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[seg] | 177 |
186 |
- |
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[SSF53448] | 10 |
231 |
- |
Access unfiltered results
Miscellaneous analyses
![]() XFF4834R_chr34750 |
![]() DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
![]() |
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![]() XFF4834R_chr34770 |
ID | rmlD |
AC | XFF4834R_chr34760 |
LT | XFF4834R_chr34760 |
OR | XFF4834R_chr from 4032314 to 4033213 on strand - |
DE | dTDP-4-dehydrorhamnose reductase |
IP | dTDP-4-dehydrorhamnose reductase |
CL | 1.6.3.1 antigen GO:0009243 |
EC | |
GO |
InterPro Biological Process: extracellular polysaccharide biosynthetic process (GO:0045226) Biological Process: metabolic process (GO:0008152) Molecular Function: catalytic activity (GO:0003824) Molecular Function: dTDP-4-dehydrorhamnose reductase activity (GO:0008831) Molecular Function: binding (GO:0005488) Curated |
PM | |
AN | syn rfbD (old name) |
CC | COG: [M] Cell wall/membrane/envelope biogenesis; |
CC | MODEL: XFF4834R |
CC | STATUS: curated by darrasse (20110127) |
MW | 32015.8 Da |
SQ | 299 aa |
........10........20........30........40........50 |
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XFF4834R_chr37960 lcl|XFF4834R_chr41040994_4385959_f2_XFF4834R-XFF4834R_chr37960 |
1 |
142 |
S=93 I=27 E=7.85814e-05 |
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NP_643889.1 lcl|rmlD-XAC3582 |
1 |
299 |
S=1370 I=89 E=6.22568e-159 |
dTDP-4-keto-L-rhamnose reductase |
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YP_365437.1 lcl|rmlD-XCV3706 |
27 |
299 |
S=1260 I=89 E=1.33805e-145 |
dTDP-4-dehydrorhamnose reductase |
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1 |
299 |
S=1071 I=71 E=1.10255e-122 |
probable dtdp-4-dehydrorhamnose reductase protein |
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NP_636016.1 lcl|rmlD-XCC0624 |
1 |
297 |
S=1030 I=69 E=8.90656e-118 |
dTDP-4-dehydrorhamnose reductase |
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1 |
299 |
S=1067 I=72 E=1.34188e-120 |
DTDP-4-dehydrorhamnose reductase |
Pubmed 16585771 |
|
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1 |
297 |
S=1020 I=68 E=5.68148e-115 |
dTDP-4-dehydrorhamnose reductase EC=1.1.1.133 ; Oxidoreductase |
||
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1 |
293 |
S=684 I=49 E=3.45865e-74 |
dTDP-4-dehydrorhamnose reductase |
Pubmed 17453174 |
|
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1 |
296 |
S=679 I=47 E=1.09326e-73 |
RmlD |
Pubmed 17449692 |
|
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1 |
296 |
S=679 I=47 E=1.17224e-73 |
RmlD |
Pubmed 16055280 |
|
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1 |
296 |
S=674 I=46 E=3.33426e-73 |
dTDP-4-dehydrorhamnose reductase EC=1.1.1.133 ; Lipopolysaccharide biosynthesis NADP Oxidoreductase |
||
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1 |
296 |
S=664 I=46 E=5.15184e-72 |
dTDP-4-dehydrorhamnose reductase EC=1.1.1.133 ; Lipopolysaccharide biosynthesis NADP Oxidoreductase |
||
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1 |
296 |
S=639 I=45 E=5.51019e-69 |
dTDP-4-dehydrorhamnose reductase EC=1.1.1.133 ; Lipopolysaccharide biosynthesis NADP Oxidoreductase |
||
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1 |
296 |
S=632 I=45 E=4.62459e-68 |
dTDP-4-dehydrorhamnose reductase EC=1.1.1.133 ; Lipopolysaccharide biosynthesis NADP Oxidoreductase |
||
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61 |
293 |
S=487 I=43 E=1.41629e-50 |
Probable dTDP-4-dehydrorhamnose reductase EC=1.1.1.133 ; NADP Oxidoreductase Plasmid |
||
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IPR016040 [G3DSA:3.40.50.720] | 1 |
223 |
NAD(P)-binding domain |
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[PTHR10491] | 1 |
298 |
- |
![]() |
IPR005913 [PF04321] | 1 |
297 |
dTDP-4-dehydrorhamnose reductase |
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IPR005913 [TIGR01214] | 2 |
296 |
dTDP-4-dehydrorhamnose reductase |
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198 |
299 |
S=210 I=42 E=5.0172e-18 |
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111 |
165 |
S=163 I=63 E=2.52893e-12 |
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1 |
110 |
S=159 I=45 E=7.32641e-12 |
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4 |
219 |
S=135 I=27 E=7.24464e-09 |
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1 |
48 |
S=126 I=52 E=7.82947e-08 |
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50 |
110 |
S=120 I=52 E=4.75926e-07 |
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4 |
156 |
S=118 I=30 E=8.46152e-07 |
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53 |
110 |
S=106 I=40 E=2.40695e-05 |
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32 |
110 |
S=102 I=33 E=6.85247e-05 |
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IPR016040 [SSF51735] | 1 |
299 |
NAD(P)-binding domain |
Access unfiltered results
Miscellaneous analyses
![]() XFF4834R_chr34760 |
![]() DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
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![]() XFF4834R_chr34780 |
ID | rmlC |
AC | XFF4834R_chr34770 |
LT | XFF4834R_chr34770 |
OR | XFF4834R_chr from 4033210 to 4033767 on strand - |
DE | dTDP-4-dehydrorhamnose 3,5-epimerase |
IP | dTDP-4-dehydrorhamnose 3,5-epimerase related |
CL | 1.6.3.1 antigen GO:0009243 |
EC | |
GO |
InterPro 5-epimerase activity (GO:0008830) Biological Process: lipopolysaccharide biosynthetic process (GO:0009103) Curated |
PM | |
AN | syn rfbC (old name) |
CC | COG: [M] Cell wall/membrane/envelope biogenesis; |
CC | MODEL: XFF4834R |
CC | STATUS: curated by darrasse (20110127) |
MW | 20843.2 Da |
SQ | 185 aa |
........10........20........30........40........50 |
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NP_643890.1 lcl|rmlC-XAC3583 |
1 |
183 |
S=809 I=79 E=3.12074e-91 |
dTDP-4-dehydrorhamnose 3,5-epimerase |
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NP_636015.1 lcl|rmlC-XCC0623 |
1 |
184 |
S=789 I=77 E=7.00935e-89 |
dTDP-4-dehydrorhamnose 3,5-epimerase |
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1 |
184 |
S=787 I=79 E=1.21402e-88 |
probable dtdp-4-dehydrorhamnose 3,5-epimerase protein |
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YP_365438.1 lcl|rmlC-XCV3707 |
1 |
183 |
S=773 I=76 E=6.35771e-87 |
dTDP-4-dehydrorhamnose 3,5-epimerase |
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NP_637378.1 lcl|rfbD-XCC2013 |
6 |
170 |
S=321 I=40 E=3.72657e-32 |
strX protein |
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1 |
184 |
S=789 I=77 E=2.66111e-87 |
dTDP-4-dehydrorhamnose 3,5-epimerase EC=5.1.3.13 ; Isomerase |
||
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1 |
183 |
S=749 I=73 E=1.98745e-82 |
DTDP-dehydrorhamnose 3,5-epimerase |
Pubmed 16585771 |
|
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18 |
163 |
S=614 I=75 E=4.60861e-66 |
RfbD |
Pubmed 18424531 |
|
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18 |
163 |
S=612 I=75 E=7.70857e-66 |
RfbD |
Pubmed 18424531 |
|
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18 |
163 |
S=610 I=75 E=1.31205e-65 |
RfbD |
Pubmed 18424531 |
|
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1 |
173 |
S=480 I=55 E=5.17157e-50 |
dTDP-4-dehydrorhamnose 3,5-epimerase EC=5.1.3.13 ; Isomerase Lipopolysaccharide biosynthesis |
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1 |
166 |
S=470 I=53 E=9.68028e-49 |
dTDP-4-dehydrorhamnose 3,5-epimerase EC=5.1.3.13 ; Isomerase Lipopolysaccharide biosynthesis |
||
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1 |
169 |
S=437 I=51 E=7.36302e-45 |
dTDP-4-dehydrorhamnose 3,5-epimerase EC=5.1.3.13 ; Isomerase Lipopolysaccharide biosynthesis |
||
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1 |
180 |
S=403 I=46 E=1.18539e-40 |
dTDP-4-dehydrorhamnose 3,5-epimerase EC=5.1.3.13 ; Isomerase Lipopolysaccharide biosynthesis |
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13 |
175 |
S=348 I=43 E=5.19269e-34 |
Probable dTDP-4-dehydrorhamnose 3,5-epimerase EC=5.1.3.13 ; Isomerase Plasmid |
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IPR014710 [G3DSA:2.60.120.10] | 1 |
175 |
RmlC-like jelly roll fold |
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IPR000888 [PTHR21047] | 1 |
184 |
dTDP-4-dehydrorhamnose 3,5-epimerase related |
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IPR000888 [PF00908] | 4 |
174 |
dTDP-4-dehydrorhamnose 3,5-epimerase related |
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IPR000888 [TIGR01221] | 2 |
176 |
dTDP-4-dehydrorhamnose 3,5-epimerase related |
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1 |
174 |
S=509 I=56 E=3.36029e-54 |
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IPR011051 [SSF51182] | 1 |
175 |
Cupin, RmlC-type |
Access unfiltered results
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Set of Uniprot with relevant PubMed cross-references ncbi-blastp |
184 hits |
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Swiss-Prot ncbi-blastp |
8 hits |
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Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp |
0 hits |
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HAMAP scan |
0 hits |
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IprScan |
5 hits |
Miscellaneous analyses
![]() XFF4834R_chr34770 |
![]() DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
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![]() XFF4834R_chr34790 |
ID | rmlA |
AC | XFF4834R_chr34780 |
LT | XFF4834R_chr34780 |
OR | XFF4834R_chr from 4033764 to 4034651 on strand - |
DE | glucose-1-phosphate thymidylyltransferase |
IP | Glucose-1-phosphate thymidylyltransferase, long form |
CL | 1.6.3.1 antigen GO:0009243 |
EC | |
GO |
InterPro Biological Process: extracellular polysaccharide biosynthetic process (GO:0045226) Biological Process: biosynthetic process (GO:0009058) Molecular Function: nucleotidyltransferase activity (GO:0016779) Molecular Function: glucose-1-phosphate thymidylyltransferase activity (GO:0008879) Curated |
PM | |
AN | syn rfbA (old name) |
CC | COG: [M] Cell wall/membrane/envelope biogenesis; |
CC | MODEL: XFF4834R |
CC | STATUS: curated by darrasse (20110127) |
MW | 32971.3 Da |
SQ | 295 aa |
........10........20........30........40........50 |
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XFF4834R_chr22950 lcl|galU-XFF4834R_chr22950 |
4 |
237 |
S=141 I=26 E=1.34408e-10 |
glucose-1-phosphate uridylyltransferase |
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XFF4834R_chr16850 lcl|XFF4834R_chr18040300_1936010_r2_XFF4834R-XFF4834R_chr16850 |
5 |
111 |
S=115 I=31 E=1.91684e-07 |
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1 |
295 |
S=1418 I=89 E=8.78514e-165 |
probable glucose-1-phosphate thymidylyltransferase protein |
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NP_643891.1 lcl|rmlA-XAC3584 |
1 |
295 |
S=1411 I=88 E=6.75758e-164 |
glucose-1-phosphate thymidylyltransferase |
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YP_365439.1 lcl|rmlA-XCV3708 |
1 |
294 |
S=1403 I=88 E=5.77127e-163 |
glucose-1-phosphate thymidylyltransferase |
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NP_636014.1 lcl|rmlA-XCC0622 |
1 |
294 |
S=1389 I=88 E=2.79426e-161 |
glucose-1-phosphate thymidylyltransferase |
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NP_637544.1 lcl|galU-XCC2188 |
4 |
237 |
S=156 I=27 E=6.9634e-12 |
UTP-glucose-1-phosphate uridylyltransferase |
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NP_642609.1 lcl|galU-XAC2292 |
4 |
237 |
S=144 I=26 E=2.21852e-10 |
UTP-glucose-1-phosphate uridylyltransferase |
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YP_364221.1 lcl|galU-XCV2490 |
4 |
237 |
S=142 I=26 E=3.25589e-10 |
UTP-glucose-1-phosphate uridylyltransferase |
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5 |
111 |
S=132 I=37 E=5.83449e-09 |
putative nucleotidyl transferase protein |
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4 |
237 |
S=129 I=26 E=1.33574e-08 |
probable utp-glucose-1-phosphate uridylyltransferase protein |
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NP_638133.1 lcl|glgC-XCC2785 |
5 |
111 |
S=126 I=34 E=3.39529e-08 |
nucleotidyl transferase |
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YP_364831.1 lcl|XCV3100 |
5 |
111 |
S=120 I=32 E=1.4948e-07 |
putative nucleotidyltransferase |
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NP_643264.1 lcl|XAC2955-XAC2955 |
5 |
111 |
S=120 I=32 E=1.56141e-07 |
nucleotidyl transferase |
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1 |
294 |
S=1389 I=88 E=1.14153e-159 |
Glucose-1-phosphate thymidylyltransferase EC=2.7.7.24 ; Lipopolysaccharide biosynthesis Magnesium Metal-binding Nucleotidyltransferase |
Pubmed 8253667 |
|
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1 |
294 |
S=1357 I=86 E=9.39144e-156 |
Glucose-1-phosphate thymidylyltransferase EC=2.7.7.24 ; Magnesium Metal-binding Nucleotidyltransferase |
Pubmed 16585771 |
|
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4 |
288 |
S=1077 I=70 E=8.36635e-122 |
Glucose-1-phosphate thymidylyltransferase EC=2.7.7.24 ; Magnesium Metal-binding Nucleotidyltransferase |
Pubmed 9988483 |
|
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5 |
295 |
S=1071 I=67 E=3.91514e-121 |
Glucose-1-phosphate thymidylyltransferase EC=2.7.7.24 ; Magnesium Metal-binding Nucleotidyltransferase |
Pubmed 15073305 |
|
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1 |
290 |
S=1068 I=68 E=8.00278e-121 |
Glucose-1-phosphate thymidylyltransferase EC=2.7.7.24 ; Magnesium Metal-binding Nucleotidyltransferase |
Pubmed 19040662 |
|
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1 |
294 |
S=1389 I=88 E=7.77261e-160 |
Glucose-1-phosphate thymidylyltransferase EC=2.7.7.24 ; Lipopolysaccharide biosynthesis Magnesium Metal-binding Nucleotidyltransferase |
||
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1 |
294 |
S=1389 I=88 E=7.77261e-160 |
Glucose-1-phosphate thymidylyltransferase EC=2.7.7.24 ; Lipopolysaccharide biosynthesis Magnesium Metal-binding Nucleotidyltransferase |
||
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1 |
290 |
S=1065 I=68 E=1.39722e-120 |
Glucose-1-phosphate thymidylyltransferase EC=2.7.7.24 ; Lipopolysaccharide biosynthesis Magnesium Metal-binding Nucleotidyltransferase |
||
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1 |
290 |
S=1063 I=68 E=2.33705e-120 |
Glucose-1-phosphate thymidylyltransferase 1 EC=2.7.7.24 ; Lipopolysaccharide biosynthesis Magnesium Metal-binding Nucleotidyltransferase |
||
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1 |
290 |
S=1057 I=68 E=1.20373e-119 |
Glucose-1-phosphate thymidylyltransferase EC=2.7.7.24 ; Lipopolysaccharide biosynthesis Magnesium Metal-binding Nucleotidyltransferase |
||
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[G3DSA:3.90.550.10] | 5 |
294 |
- |
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[PTHR22572:SF13] | 12 |
289 |
- |
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[PTHR22572] | 12 |
289 |
- |
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IPR005835 [PF00483] | 5 |
241 |
Nucleotidyl transferase |
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IPR005907 [TIGR01207] | 5 |
290 |
Glucose-1-phosphate thymidylyltransferase, long form |
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7 |
293 |
S=475 I=40 E=4.64042e-50 |
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5 |
80 |
S=120 I=38 E=5.56705e-07 |
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1 |
114 |
S=102 I=25 E=6.67446e-05 |
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[SSF53448] | 4 |
294 |
- |
Access unfiltered results
Miscellaneous analyses
![]() XFF4834R_chr34780 |
![]() DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
![]() |
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![]() XFF4834R_chr_3697 |
ID | rmlB |
AC | XFF4834R_chr34790 |
LT | XFF4834R_chr34790 |
OR | XFF4834R_chr from 4034703 to 4035758 on strand - |
DE | dTDP-glucose 4,6-dehydratase |
IP | NAD-dependent epimerase/dehydratase |
CL | 1.6.3.1 antigen GO:0009243 |
EC | |
GO |
InterPro 6-dehydratase activity (GO:0008460) Biological Process: nucleotide-sugar metabolic process (GO:0009225) Biological Process: cellular metabolic process (GO:0044237) Biological Process: metabolic process (GO:0008152) Molecular Function: catalytic activity (GO:0003824) Molecular Function: binding (GO:0005488) Molecular Function: coenzyme binding (GO:0050662) Curated |
PM | |
AN | start change : alternative codon Val located 6 aa before the initial start which is also a Val (but it is coded as a M on the initial sequence and multialign) syn rfbB (old name) |
CC | COG: [M] Cell wall/membrane/envelope biogenesis; |
CC | MODEL: XFF4834R |
CC | STATUS: curated by darrasse (20110127) |
MW | 38477 Da |
SQ | 351 aa |
........10........20........30........40........50 |
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XFF4834R_chr37960 lcl|XFF4834R_chr41040994_4385959_f2_XFF4834R-XFF4834R_chr37960 |
3 |
326 |
S=232 I=29 E=1.25965e-21 |
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XFF4834R_chr34900 lcl|gmd-XFF4834R_chr34900 |
5 |
325 |
S=162 I=24 E=4.42989e-13 |
GDP-D-mannose dehydratase, NAD(P)-binding |
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XFF4834R_chr36310 lcl|galE-XFF4834R_chr36310 |
5 |
250 |
S=142 I=30 E=1.07619e-10 |
UDP-galactose-4-epimerase |
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YP_365440.1 lcl|rmlB-XCV3709 |
1 |
351 |
S=1709 I=91 E=0 |
dTDP-glucose 4,6-dehydratase |
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NP_643892.1 lcl|rmlB-XAC3585 |
1 |
351 |
S=1696 I=90 E=0 |
dTDP-glucose 4,6-dehydratase |
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NP_636013.1 lcl|rmlB-XCC0621 |
1 |
348 |
S=1676 I=89 E=0 |
dTDP-glucose 4,6-dehydratase |
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1 |
351 |
S=1657 I=88 E=0 |
probable dtdp-glucose 4,6-dehydratase protein |
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5 |
331 |
S=248 I=29 E=5.38248e-23 |
probable ndp-hexose oxidoreductase protein |
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YP_365752.1 lcl|wbnF-XCV4021 |
3 |
326 |
S=242 I=28 E=3.66449e-22 |
nucleotide sugar epimerase |
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NP_639193.1 lcl|wbnF-XCC3853 |
3 |
326 |
S=235 I=29 E=2.45172e-21 |
nucleotide sugar epimerase |
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NP_644209.1 lcl|wbnF-XAC3908 |
3 |
326 |
S=233 I=29 E=4.39711e-21 |
nucleotide sugar epimerase |
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3 |
329 |
S=229 I=26 E=1.38991e-20 |
putative nucleoside-diphosphate-sugar epimerases protein |
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5 |
324 |
S=169 I=24 E=2.4354e-13 |
probable gdp-mannose 4,6-dehydratase protein |
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YP_365449.1 lcl|gmd-XCV3718 |
5 |
325 |
S=149 I=24 E=6.34396e-11 |
GDP-mannose 4,6-dehydratase |
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NP_644047.1 lcl|XAC3740-XAC3740 |
5 |
250 |
S=143 I=30 E=2.94297e-10 |
UDP-glucose 4-epimerase |
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NP_635998.1 lcl|XCC0606 |
1 |
238 |
S=142 I=25 E=3.78961e-10 |
GDP-mannose 4,6 dehydratase |
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YP_365590.1 lcl|galE-XCV3859 |
5 |
250 |
S=141 I=30 E=6.45016e-10 |
UDP-glucose 4-epimerase |
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NP_639042.1 lcl|XCC3696 |
5 |
338 |
S=133 I=27 E=5.4135e-09 |
UDP-glucose 4-epimerase |
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1 |
348 |
S=1689 I=90 E=0 |
dTDP-glucose 4,6-dehydratase EC=4.2.1.46 ; Lipopolysaccharide biosynthesis Lyase NAD |
Pubmed 8253667 |
|
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1 |
351 |
S=1647 I=87 E=0 |
dTDP-glucose 4,6-dehydratase EC=4.2.1.46 ; Lyase NAD |
Pubmed 16585771 |
|
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5 |
343 |
S=1238 I=68 E=2.86857e-141 |
dTDP-glucose 4,6-dehydratase EC=4.2.1.46 ; Lyase NAD |
Pubmed 9988483 |
|
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