8 hits
| XFF4834R_chr02360 | XFF4834R_chr02490203_0280230_r1_XFF4834R-XFF4834R_chr02360 | XFF4834R_chr02360 | probable biotin carboxylase, acetyl-coa carboxylase subunit a protein |
| XFF4834R_chr02370 | XFF4834R_chr02510471_0282081_r1_XFF4834R-XFF4834R_chr02370 | XFF4834R_chr02370 | probable acetyl-coenzyme a carboxyltransferase beta subunit protein |
| XFF4834R_chr05280 | accC | XFF4834R_chr05280 | probable acetyl-CoA carboxylase, biotin carboxylase subunit |
| XFF4834R_chr05300 | accB | XFF4834R_chr05300 | probable acetyl CoA carboxylase, BCCP subunit |
| XFF4834R_chr11170 | fabH | XFF4834R_chr11170 | probable 3-oxoacyl-[acyl-carrier-protein] synthase III |
| XFF4834R_chr11190 | fabD | XFF4834R_chr11190 | probable malonyl-CoA-[acyl-carrier-protein] transacylase |
| XFF4834R_chr27110 | accD | XFF4834R_chr27110 | probable acetyl-CoA carboxylase, beta (carboxyltranferase) subunit |
| XFF4834R_chr30920 | accA | XFF4834R_chr30920 | probable acetyl-CoA carboxylase, carboxytransferase, alpha subunit |
XFF4834R_chr02350 |
DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
|
|
XFF4834R_chr02370 |
| ID | XFF4834R_chr02490203_0280230_r1_XFF4834R-XFF4834R_chr02360 |
| AC | XFF4834R_chr02360 |
| LT | XFF4834R_chr02360 |
| OR | XFF4834R_chr from 278203 to 280230 on strand - |
| DE | probable biotin carboxylase, acetyl-coa carboxylase subunit a protein |
| IP | Pyruvate carboxylase; Glutathione synthetase, prokaryotic |
| CL | 1.5.4.3 Fatty acid biosynthesis -- initial steps |
| EC | |
| GO |
InterPro Biological Process: metabolic process (GO:0008152) Molecular Function: biotin binding (GO:0009374) Molecular Function: catalytic activity (GO:0003824) Molecular Function: ligase activity (GO:0016874) Molecular Function: ATP binding (GO:0005524) Curated |
| PM | |
| AN | homologie de 40 pourcent avec coli sur 400 aa un autre gene XFF4834R (0580) correspond mieux a accC donc ne pas suivre annotation de xav mais celle de albilineans |
| CC | COG: [I] Lipid transport and metabolism; |
| CC | MODEL: XFF4834R |
| CC | STATUS: curated by darrasse (20110630) |
| MW | 72310.1 Da |
| SQ | 675 aa |
........10........20........30........40........50 |
Domain decomposition |
|
XFF4834R_chr05280 lcl|accC-XFF4834R_chr05280 |
15 |
460 |
S=959 I=47 E=2.31286e-109 |
acetyl-CoA carboxylase, biotin carboxylase subunit |
|
NP_640619.1 lcl|accC-XAC0263 |
1 |
675 |
S=3091 I=91 E=0 |
biotin carboxylase |
|
|
YP_362002.1 lcl|accC-XCV0271 |
1 |
675 |
S=3090 I=89 E=0 |
biotin carboxylase |
|
|
NP_635639.1 lcl|accC-XCC0244 |
1 |
675 |
S=2627 I=77 E=0 |
biotin carboxylase |
|
|
15 |
673 |
S=2069 I=66 E=0 |
probable biotin carboxylase, acetyl-coa carboxylase subunit a protein |
|
|
15 |
460 |
S=966 I=47 E=1.49995e-109 |
probable acetyl-coa carboxylase, biotin carboxylase subunit protein |
|
|
NP_635907.1 lcl|accC-XCC0515 |
15 |
460 |
S=966 I=47 E=1.49995e-109 |
acetyl-CoA carboxylase biotin carboxylase subunit |
|
|
YP_362294.1 lcl|accC-XCV0563 |
15 |
460 |
S=961 I=47 E=5.35681e-109 |
acetyl-CoA carboxylase biotin carboxylase subunit |
|
|
NP_640883.1 lcl|accC-XAC0530 |
15 |
460 |
S=960 I=47 E=8.06997e-109 |
acetyl-CoA carboxylase biotin carboxylase subunit |
|
|
NP_644620.1 lcl|uahA-XAC4326 |
15 |
457 |
S=955 I=46 E=2.64142e-108 |
urea amidolyase |
 |
IPR013817 [G3DSA:3.40.50.20] | 14 |
98 |
Pre-ATP-grasp fold |
|
IPR013816 [G3DSA:3.30.470.20] | 99 |
464 |
ATP-grasp fold, subdomain 2 |
|
[G3DSA:2.40.50.100] | 595 |
670 |
- |
|
[PTHR18866] | 17 |
670 |
- |
|
IPR005479 [PF02786] | 128 |
335 |
Carbamoyl phosphate synthetase, large subunit, ATP-binding |
|
IPR005481 [PF00289] | 15 |
123 |
Carbamoyl phosphate synthase, large subunit, N-terminal |
|
IPR005482 [PF02785] | 349 |
456 |
Biotin carboxylase, C-terminal |
|
IPR000089 [PF00364] | 605 |
669 |
Biotin/lipoyl attachment |
|
IPR005482 [SM00878] | 349 |
456 |
Biotin carboxylase, C-terminal |
|
IPR001882 [PS00188] | 627 |
644 |
Biotin-binding site |
|
IPR005479 [PS00866] | 166 |
180 |
Carbamoyl phosphate synthetase, large subunit, ATP-binding |
|
IPR005479 [PS00867] | 299 |
306 |
Carbamoyl phosphate synthetase, large subunit, ATP-binding |
|
IPR000089 [PS50968] | 603 |
670 |
Biotin/lipoyl attachment |
|
IPR011761 [PS50975] | 133 |
330 |
ATP-grasp fold |
|
IPR011764 [PS50979] | 14 |
460 |
Biotin carboxylation domain |
|
[seg] | 102 |
111 |
- |
|
[seg] | 185 |
196 |
- |
|
[seg] | 412 |
422 |
- |
|
[seg] | 476 |
495 |
- |
|
[SSF56059] | 129 |
342 |
- |
|
IPR016185 [SSF52440] | 14 |
128 |
PreATP-grasp-like fold |
|
IPR011054 [SSF51246] | 343 |
466 |
Rudiment single hybrid motif |
|
IPR011053 [SSF51230] | 588 |
671 |
Single hybrid motif |
Suggestions Access unfiltered results
|
Set of Uniprot with relevant PubMed cross-references ncbi-blastp |
263 hits |
|
Swiss-Prot ncbi-blastp |
93 hits |
|
|
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp |
1 hits |
|
HAMAP scan |
0 hits |
|
|
IprScan |
23 hits |
Miscellaneous analyses
|
XFF4834R_chr02360 |
DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
|
|
XFF4834R_chr02380 |
| ID | XFF4834R_chr02510471_0282081_r1_XFF4834R-XFF4834R_chr02370 |
| AC | XFF4834R_chr02370 |
| LT | XFF4834R_chr02370 |
| OR | XFF4834R_chr from 280471 to 282081 on strand - |
| DE | probable acetyl-coenzyme a carboxyltransferase beta subunit protein |
| IP | Carboxyl transferase |
| CL | 1.5.4.3 Fatty acid biosynthesis -- initial steps |
| EC | |
| GO |
InterPro Molecular Function: ligase activity (GO:0016874) Curated |
| PM | |
| AN | pas assez d homology avec coli pour nommer le gene comme xav meme probleme que pour XFF4834R 0265 |
| CC | COG: [I] Lipid transport and metabolism; |
| CC | MODEL: XFF4834R |
| CC | STATUS: curated by brin (20100622) |
| MW | 57309.9 Da |
| SQ | 536 aa |
........10........20........30........40........50 |
Domain decomposition |
|
|
XFF4834R_chr05580 lcl|XFF4834R_chr05800234_0636154_f2_XFF4834R-XFF4834R_chr05580 |
56 |
231 |
S=118 I=32 E=1.55949e-07 |
|
|
XFF4834R_chr30920 lcl|accA-XFF4834R_chr30920 |
22 |
216 |
S=106 I=28 E=4.13722e-06 |
acetyl-CoA carboxylase, carboxytransferase, alpha subunit |
|
|
NP_640620.1 lcl|accD-XAC0264 |
1 |
536 |
S=2713 I=96 E=0 |
acyl-CoA carboxyltransferase beta chain |
|
|
YP_362003.1 lcl|accD-XCV0272 |
1 |
536 |
S=2703 I=96 E=0 |
acetyl-CoA carboxylase beta chain |
|
|
NP_635640.1 lcl|accD-XCC0245 |
1 |
536 |
S=2639 I=93 E=0 |
acyl-CoA carboxyltransferase beta chain |
|
|
1 |
536 |
S=2416 I=86 E=0 |
probable acetyl-coenzyme a carboxyltransferase beta subunit protein |
|
|
NP_640915.1 lcl|mdcB-XAC0562 |
56 |
231 |
S=116 I=30 E=9.77475e-07 |
malonate decarboxylase subunit beta |
|
|
NP_638957.1 lcl|mdcB-XCC3611 |
56 |
231 |
S=114 I=31 E=1.70782e-06 |
malonate decarboxylase subunit beta |
|
|
YP_363193.1 lcl|accA-XCV1462 |
22 |
216 |
S=110 I=29 E=4.69544e-06 |
acetyl-CoA carboxylase carboxyltransferase subunit alpha |
|
|
YP_362327.1 lcl|mdcD-XCV0596 |
56 |
231 |
S=110 I=30 E=5.30503e-06 |
malonate decarboxylase subunit beta |
|
|
NP_636731.1 lcl|accA-XCC1357 |
20 |
216 |
S=107 I=28 E=1.4209e-05 |
acetyl-CoA carboxylase carboxyltransferase subunit alpha |
|
|
NP_641740.1 lcl|accA-XAC1405 |
22 |
216 |
S=105 I=28 E=2.01383e-05 |
acetyl-CoA carboxylase carboxyltransferase subunit alpha |
|
[G3DSA:3.90.226.10] | 11 |
272 |
- |
|
[G3DSA:3.90.226.10] | 270 |
525 |
- |
|
[PTHR22855:SF13] | 52 |
536 |
- |
|
[PTHR22855] | 52 |
536 |
- |
|
IPR000022 [PF01039] | 48 |
526 |
Carboxyl transferase |
|
IPR011762 [PS50980] | 28 |
242 |
Acetyl-coenzyme A carboxyltransferase, N-terminal |
|
IPR011763 [PS50989] | 243 |
530 |
Acetyl-coenzyme A carboxyltransferase, C-terminal |
|
[seg] | 271 |
283 |
- |
|
[SSF52096] | 2 |
531 |
- |
Suggestions Access unfiltered results
|
|
Set of Uniprot with relevant PubMed cross-references ncbi-blastp |
50 hits |
|
|
Swiss-Prot ncbi-blastp |
21 hits |
|
|
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp |
2 hits |
|
|
HAMAP scan |
0 hits |
|
|
IprScan |
9 hits |
Miscellaneous analyses
|
XFF4834R_chr05270 |
DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
|
|
XFF4834R_chr05290 |
| ID | accC |
| AC | XFF4834R_chr05280 |
| LT | XFF4834R_chr05280 |
| OR | XFF4834R_chr from 593257 to 594624 on strand - |
| DE | probable acetyl-CoA carboxylase, biotin carboxylase subunit |
| IP | Acetyl-CoA carboxylase, biotin carboxylase; Glutathione synthetase, prokaryotic |
| CL | 1.5.4.3 Fatty acid biosynthesis -- initial steps |
| EC | |
| GO |
InterPro Biological Process: metabolic process (GO:0008152) Molecular Function: biotin binding (GO:0009374) Molecular Function: catalytic activity (GO:0003824) Molecular Function: ligase activity (GO:0016874) Molecular Function: ATP binding (GO:0005524) Curated |
| PM | |
| AN | Transcription of the biotin (bio) biosynthetic operon of Escherichia coli is negatively regulated by the BirA protein, an atypical repressor protein in that it is also an enzyme. The BirA-catalyzed reaction involves the covalent attachment of biotin to AccB, a subunit of acetyl coenzyme (acetyl-CoA) carboxylase. The two functions of BirA allow regulation of the bio operon to respond to the intracellular concentrations of both biotin and unbiotinylated AccB. We report here that bio operon expression is down-regulated by overproduction of AccC, another acetyl-CoA carboxylase subunit known to form a complex with AccB. This down-regulation is eliminated when AccB and AccC are coordinately overexpressed, but only when the AccB partner is competent to bind AccC. Under AccC overexpression conditions AccB is underbiotinylated. PMID: 17056747 |
| CC | COG: [I] Lipid transport and metabolism; |
| CC | MODEL: XFF4834R |
| CC | STATUS: curated by brin (20100722) |
| MW | 49407.4 Da |
| SQ | 455 aa |
........10........20........30........40........50 |
|
|
XFF4834R_chr02360 lcl|XFF4834R_chr02490203_0280230_r1_XFF4834R-XFF4834R_chr02360 |
2 |
445 |
S=985 I=49 E=1.18791e-112 |
|
|
XFF4834R_chr20080 lcl|carB-XFF4834R_chr20080 |
91 |
322 |
S=103 I=22 E=8.73602e-06 |
carbamoyl-phosphate synthase large subunit |
|
|
XFF4834R_chr07850 lcl|ddlB-XFF4834R_chr07850 |
149 |
291 |
S=98 I=25 E=3.01299e-05 |
D-alanine:D-alanine ligase |
|
|
YP_362294.1 lcl|accC-XCV0563 |
1 |
455 |
S=2353 I=98 E=0 |
acetyl-CoA carboxylase biotin carboxylase subunit |
|
|
NP_640883.1 lcl|accC-XAC0530 |
1 |
455 |
S=2352 I=98 E=0 |
acetyl-CoA carboxylase biotin carboxylase subunit |
|
|
NP_635907.1 lcl|accC-XCC0515 |
1 |
455 |
S=2325 I=97 E=0 |
acetyl-CoA carboxylase biotin carboxylase subunit |
|
|
1 |
455 |
S=2325 I=96 E=0 |
probable acetyl-coa carboxylase, biotin carboxylase subunit protein |
|
|
NP_635639.1 lcl|accC-XCC0244 |
2 |
445 |
S=1021 I=49 E=1.72051e-116 |
biotin carboxylase |
|
|
YP_362002.1 lcl|accC-XCV0271 |
2 |
445 |
S=997 I=49 E=1.57291e-113 |
biotin carboxylase |
|
|
2 |
445 |
S=981 I=48 E=1.25179e-111 |
probable biotin carboxylase, acetyl-coa carboxylase subunit a protein |
|
|
NP_640619.1 lcl|accC-XAC0263 |
2 |
445 |
S=967 I=49 E=6.1138e-110 |
biotin carboxylase |
|
|
NP_644620.1 lcl|uahA-XAC4326 |
1 |
442 |
S=820 I=40 E=3.82723e-92 |
urea amidolyase |
|
|
NP_637208.1 lcl|carB-XCC1843 |
91 |
223 |
S=108 I=25 E=8.74389e-06 |
carbamoyl phosphate synthase large subunit |
|
|
YP_363640.1 lcl|carB-XCV1909 |
91 |
322 |
S=103 I=22 E=3.15008e-05 |
carbamoyl phosphate synthase large subunit |
|
|
NP_642188.2 lcl|carB-XAC1862 |
91 |
322 |
S=103 I=22 E=3.40722e-05 |
carbamoyl phosphate synthase large subunit |
|
|
91 |
322 |
S=101 I=21 E=5.26896e-05 |
probable carbamoyl-phosphate synthetase large chain protein |
|
|
1 |
444 |
S=1753 I=75 E=0 |
Acetyl-CoA carboxylase |
Pubmed 20088879 |
|
|
||||||
|
|
1 |
444 |
S=1753 I=75 E=0 |
Biotin carboxylase EC=6.3.4.14 EC=6.4.1.2 ; ATP-binding Fatty acid biosynthesis Ligase Lipid Nucleotide-binding |
||
|
||||||
|
|
1 |
444 |
S=1713 I=73 E=0 |
Biotin carboxylase EC=6.3.4.14 EC=6.4.1.2 ; ATP-binding Fatty acid biosynthesis Ligase Lipid Nucleotide-binding |
Pubmed 9560425 |
|
|
||||||
|
|
1 |
449 |
S=1675 I=68 E=0 |
Biotin carboxylase EC=6.3.4.14 EC=6.4.1.2 ; ATP-binding Fatty acid biosynthesis Ligase Lipid Nucleotide-binding |
Pubmed 7693652 |
|
|
||||||
|
|
1 |
444 |
S=1385 I=58 E=5.72858e-159 |
Predicted acetyl-CoA carboxylase ; Manganese Metal-binding |
Pubmed 16008504 |
|
|
||||||
|
|
1 |
444 |
S=1753 I=75 E=0 |
Biotin carboxylase EC=6.3.4.14 EC=6.4.1.2 ; ATP-binding Fatty acid biosynthesis Ligase Lipid Nucleotide-binding |
|
|
1 |
444 |
S=1750 I=74 E=0 |
Biotin carboxylase EC=6.3.4.14 EC=6.4.1.2 ; ATP-binding Fatty acid biosynthesis Ligase Lipid Nucleotide-binding |
|
|
1 |
444 |
S=1730 I=73 E=0 |
Biotin carboxylase EC=6.3.4.14 EC=6.4.1.2 ; ATP-binding Fatty acid biosynthesis Ligase Lipid Nucleotide-binding |
|
|
1 |
444 |
S=1713 I=73 E=0 |
Biotin carboxylase EC=6.3.4.14 EC=6.4.1.2 ; ATP-binding Fatty acid biosynthesis Ligase Lipid Nucleotide-binding |
|
|
1 |
449 |
S=1675 I=68 E=0 |
Biotin carboxylase EC=6.3.4.14 EC=6.4.1.2 ; ATP-binding Fatty acid biosynthesis Ligase Lipid Nucleotide-binding |
|
IPR013817 [G3DSA:3.40.50.20] | 1 |
85 |
Pre-ATP-grasp fold |
|
IPR013816 [G3DSA:3.30.470.20] | 86 |
449 |
ATP-grasp fold, subdomain 2 |
|
[PTHR18866] | 4 |
446 |
- |
|
IPR005479 [PF02786] | 115 |
323 |
Carbamoyl phosphate synthetase, large subunit, ATP-binding |
|
IPR005481 [PF00289] | 1 |
110 |
Carbamoyl phosphate synthase, large subunit, N-terminal |
|
IPR005482 [PF02785] | 336 |
441 |
Biotin carboxylase, C-terminal |
|
IPR005482 [SM00878] | 336 |
441 |
Biotin carboxylase, C-terminal |
|
IPR004549 [TIGR00514] | 1 |
448 |
Acetyl-CoA carboxylase, biotin carboxylase |
|
IPR005479 [PS00866] | 154 |
168 |
Carbamoyl phosphate synthetase, large subunit, ATP-binding |
|
IPR005479 [PS00867] | 286 |
293 |
Carbamoyl phosphate synthetase, large subunit, ATP-binding |
|
IPR011761 [PS50975] | 120 |
317 |
ATP-grasp fold |
|
IPR011764 [PS50979] | 1 |
445 |
Biotin carboxylation domain |
|
[seg] | 162 |
168 |
- |
|
280 |
383 |
S=365 I=68 E=1.02115e-36 |
|
|
1 |
78 |
S=238 I=60 E=2.34931e-21 |
|
|
225 |
285 |
S=196 I=62 E=3.55533e-16 |
|
|
169 |
226 |
S=177 I=59 E=6.88539e-14 |
|
|
79 |
116 |
S=153 I=71 E=5.06189e-11 |
|
|
354 |
383 |
S=145 I=73 E=4.75822e-10 |
|
|
384 |
442 |
S=143 I=49 E=9.64166e-10 |
|
|
345 |
383 |
S=133 I=62 E=1.43869e-08 |
|
|
349 |
383 |
S=114 I=60 E=2.86007e-06 |
|
|
347 |
383 |
S=113 I=49 E=3.78046e-06 |
|
[SSF56059] | 115 |
330 |
- |
|
IPR016185 [SSF52440] | 1 |
115 |
PreATP-grasp-like fold |
|
IPR011054 [SSF51246] | 330 |
451 |
Rudiment single hybrid motif |
Suggestions Access unfiltered results
|
|
Set of Uniprot with relevant PubMed cross-references ncbi-blastp |
279 hits |
|
|
Swiss-Prot ncbi-blastp |
128 hits |
|
|
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp |
3 hits |
|
|
HAMAP scan |
0 hits |
|
|
IprScan |
16 hits |
Miscellaneous analyses
|
XFF4834R_chr05290 |
DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
|
|
XFF4834R_chr_0583 |
| ID | accB |
| AC | XFF4834R_chr05300 |
| LT | XFF4834R_chr05300 |
| OR | XFF4834R_chr from 595074 to 595565 on strand - |
| DE | probable acetyl CoA carboxylase, BCCP subunit |
| IP | Biotin/lipoyl attachment; Acetyl-CoA biotin carboxyl carrier |
| CL | 1.5.4.3 Fatty acid biosynthesis -- initial steps |
| EC | |
| GO |
InterPro Biological Process: fatty acid biosynthetic process (GO:0006633) Cellular Component: acetyl-CoA carboxylase complex (GO:0009317) Molecular Function: biotin binding (GO:0009374) Molecular Function: acetyl-CoA carboxylase activity (GO:0003989) Curated |
| PM | |
| AN | voir commentaire XFF4834R 0580 (accC) |
| CC | COG: [I] Lipid transport and metabolism; |
| CC | MODEL: XFF4834R |
| CC | STATUS: curated by brin (20100722) |
| MW | 17037.5 Da |
| SQ | 163 aa |
........10........20........30........40........50 |
Domain decomposition |
|
|
NP_640885.1 lcl|bccP-XAC0532 |
14 |
163 |
S=635 I=86 E=2.39414e-70 |
acetyl-CoA carboxylase biotin carboxyl carrier protein subunit |
|
|
YP_362296.1 lcl|accB-XCV0565 |
14 |
163 |
S=627 I=86 E=2.67924e-69 |
acetyl-CoA carboxylase biotin carboxyl carrier protein subunit |
|
|
NP_635909.1 lcl|bccP-XCC0517 |
14 |
163 |
S=579 I=79 E=1.69409e-63 |
acetyl-CoA carboxylase biotin carboxyl carrier protein subunit |
|
|
14 |
163 |
S=523 I=74 E=1.13764e-56 |
probable biotin carboxyl carrier protein of acetyl-coa carboxylase (bccp) |
|
|
NP_644620.1 lcl|uahA-XAC4326 |
109 |
162 |
S=104 I=44 E=5.57119e-06 |
urea amidolyase |
|
|
14 |
162 |
S=335 I=50 E=2.39522e-32 |
Biotin carboxyl carrier protein of acetyl-CoA carboxylase ; Fatty acid biosynthesis Lipid |
||
|
||||||
|
|
87 |
162 |
S=272 I=66 E=1.05755e-24 |
Biotin carboxyl carrier protein of acetyl-CoA carboxylase ; Fatty acid biosynthesis Lipid |
Pubmed 10675023 |
|
|
||||||
|
|
87 |
162 |
S=268 I=67 E=2.73545e-24 |
Biotin carboxyl carrier protein of acetyl-CoA carboxylase ; Fatty acid biosynthesis Lipid |
Pubmed 7693652 |
|
|
||||||
|
|
64 |
162 |
S=247 I=54 E=1.0549e-21 |
Pyruvate carboxylase biotin-containing subunit |
Pubmed 16352836 |
|
|
||||||
|
|
14 |
163 |
S=239 I=40 E=9.49317e-21 |
Predicted biotin carboxyl carrier protein |
Pubmed 10988064 |
|
|
||||||
|
|
14 |
162 |
S=335 I=50 E=1.65127e-32 |
Biotin carboxyl carrier protein of acetyl-CoA carboxylase ; Fatty acid biosynthesis Lipid |
|
|
14 |
162 |
S=335 I=50 E=1.65127e-32 |
Biotin carboxyl carrier protein of acetyl-CoA carboxylase ; Fatty acid biosynthesis Lipid |
|
|
14 |
162 |
S=335 I=50 E=1.65127e-32 |
Biotin carboxyl carrier protein of acetyl-CoA carboxylase ; Fatty acid biosynthesis Lipid |
|
|
14 |
162 |
S=335 I=50 E=1.65127e-32 |
Biotin carboxyl carrier protein of acetyl-CoA carboxylase ; Fatty acid biosynthesis Lipid |
|
|
87 |
162 |
S=272 I=66 E=7.29072e-25 |
Biotin carboxyl carrier protein of acetyl-CoA carboxylase ; Fatty acid biosynthesis Lipid |
|
IPR001249 [PR01071] | 92 |
105 |
Acetyl-CoA biotin carboxyl carrier |
|
IPR001249 [PR01071] | 109 |
123 |
Acetyl-CoA biotin carboxyl carrier |
|
IPR001249 [PR01071] | 124 |
137 |
Acetyl-CoA biotin carboxyl carrier |
|
[G3DSA:2.40.50.100] | 84 |
163 |
- |
|
[PTHR18866:SF1] | 110 |
162 |
- |
|
[PTHR18866] | 110 |
162 |
- |
|
IPR000089 [PF00364] | 89 |
162 |
Biotin/lipoyl attachment |
|
IPR001249 [TIGR00531] | 1 |
163 |
Acetyl-CoA biotin carboxyl carrier |
|
IPR001882 [PS00188] | 119 |
136 |
Biotin-binding site |
|
IPR000089 [PS50968] | 88 |
162 |
Biotin/lipoyl attachment |
|
[seg] | 2 |
13 |
- |
|
[seg] | 44 |
63 |
- |
|
|
94 |
162 |
S=147 I=55 E=2.51807e-10 |
|
|
35 |
85 |
S=120 I=59 E=4.09283e-07 |
|
|
35 |
85 |
S=105 I=55 E=2.9082e-05 |
|
IPR011053 [SSF51230] | 84 |
163 |
Single hybrid motif |
Suggestions Access unfiltered results
|
|
Set of Uniprot with relevant PubMed cross-references ncbi-blastp |
28 hits |
|
|
Swiss-Prot ncbi-blastp |
18 hits |
|
|
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp |
0 hits |
|
|
HAMAP scan |
0 hits |
|
|
IprScan |
13 hits |
Miscellaneous analyses
|
XFF4834R_chr11160 |
DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
|
|
XFF4834R_chr_1198 |
| ID | fabH |
| AC | XFF4834R_chr11170 |
| LT | XFF4834R_chr11170 |
| OR | XFF4834R_chr from 1247972 to 1248949 on strand + |
| DE | probable 3-oxoacyl-[acyl-carrier-protein] synthase III |
| IP | Beta-ketoacyl-acyl carrier protein synthase III (FabH) |
| CL | 1.5.4.3 Fatty acid biosynthesis -- initial steps |
| EC | |
| GO |
InterPro Biological Process: lipid biosynthetic process (GO:0008610) Biological Process: fatty acid biosynthetic process (GO:0006633) Biological Process: metabolic process (GO:0008152) Molecular Function: catalytic activity (GO:0003824) Molecular Function: 3-oxoacyl-[acyl-carrier-protein] synthase activity (GO:0004315) transferring acyl groups other than amino-acyl groups (GO:0016747) Curated |
| PM | |
| AN | |
| CC | COG: [I] Lipid transport and metabolism; |
| CC | MODEL: XFF4834R |
| CC | STATUS: curated by brin (20100907) |
| MW | 34757.2 Da |
| SQ | 325 aa |
........10........20........30........40........50 |
Domain decomposition |
|
|
XFF4834R_chr26080 lcl|XFF4834R_chr28570060_3014139_r1_XFF4834R-XFF4834R_chr26080 |
8 |
325 |
S=289 I=30 E=1.50662e-28 |
|
|
XFF4834R_chr02040 lcl|XFF4834R_chr02140693_0241709_f3_XFF4834R-XFF4834R_chr02040 |
42 |
321 |
S=162 I=26 E=4.50247e-13 |
|
|
NP_641460.1 lcl|fabH-XAC1123 |
1 |
325 |
S=1693 I=99 E=0 |
3-oxoacyl-(acyl carrier protein) synthase III |
|
|
YP_362874.1 lcl|fabH-XCV1143 |
1 |
325 |
S=1689 I=99 E=0 |
3-oxoacyl-(acyl carrier protein) synthase III |
|
|
NP_636392.1 lcl|fabH-XCC1016 |
1 |
325 |
S=1587 I=97 E=0 |
3-oxoacyl-(acyl carrier protein) synthase III |
|
|
1 |
325 |
S=1379 I=80 E=5.31447e-160 |
probable 3-oxoacyl-(acyl-carrier-protein) synthase 3 |
|
|
NP_637793.2 lcl|fabH-XCC2440 |
8 |
325 |
S=351 I=32 E=1.80317e-35 |
GumO |
|
|
YP_363742.1 lcl|fabH-XCV2011 |
8 |
323 |
S=320 I=29 E=9.93353e-32 |
3-oxoacyl-[acyl-carrier protein] synthase III |
|
|
NP_642290.1 lcl|fabH-XAC1964 |
16 |
323 |
S=317 I=30 E=2.27416e-31 |
3-oxoacyl-[ACP] synthase |
|
|
YP_364501.1 lcl|fabH-XCV2770 |
8 |
325 |
S=304 I=31 E=8.6257e-30 |
3-oxoacyl-[acyl-carrier protein] synthase III |
|
|
8 |
323 |
S=304 I=29 E=9.01004e-30 |
probable 3-oxoacyl-(acyl-carrier protein) synthase III |
|
|
NP_642885.1 lcl|fabH-XAC2571 |
8 |
325 |
S=303 I=30 E=1.2659e-29 |
3-oxoacyl-[ACP] synthase III |
|
|
42 |
321 |
S=184 I=26 E=2.94036e-15 |
probable 3-oxoacyl-[acyl-carrier-protein] synthase III |
|
|
YP_361970.1 lcl|fabH-XCV0239 |
42 |
321 |
S=163 I=26 E=9.77716e-13 |
3-oxoacyl-(acyl carrier protein) synthase III |
|
|
NP_640589.1 lcl|fabH-XAC0233 |
42 |
321 |
S=162 I=26 E=1.69341e-12 |
3-oxoacyl-(acyl carrier protein) synthase III |
|
|
NP_635607.1 lcl|fabH-XCC0212 |
42 |
157 |
S=124 I=31 E=6.24148e-08 |
3-oxoacyl-(acyl carrier protein) synthase III |
|
IPR016038 [G3DSA:3.40.47.10] | 8 |
181 |
Thiolase-like, subgroup |
|
IPR016038 [G3DSA:3.40.47.10] | 211 |
325 |
Thiolase-like, subgroup |
|
IPR004655 [MF_01815] | 5 |
325 |
Beta-ketoacyl-acyl carrier protein synthase III (FabH) |
|
IPR013747 [PF08541] | 236 |
325 |
3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal |
|
IPR013751 [PF08545] | 110 |
187 |
3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III |
|
IPR004655 [TIGR00747] | 5 |
325 |
Beta-ketoacyl-acyl carrier protein synthase III (FabH) |
|
IPR016039 [SSF53901] | 6 |
324 |
Thiolase-like |
Suggestions Access unfiltered results
|
|
Set of Uniprot with relevant PubMed cross-references ncbi-blastp |
60 hits |
|
|
Swiss-Prot ncbi-blastp |
344 hits |
|
|
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp |
2 hits |
|
|
HAMAP scan |
0 hits |
|
|
IprScan |
7 hits |
Miscellaneous analyses
|
XFF4834R_chr_1200 |
DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
|
|
XFF4834R_chr11200 |
| ID | fabD |
| AC | XFF4834R_chr11190 |
| LT | XFF4834R_chr11190 |
| OR | XFF4834R_chr from 1249910 to 1250854 on strand + |
| DE | probable malonyl-CoA-[acyl-carrier-protein] transacylase |
| IP | Malonyl CoA-acyl carrier protein transacylase; Polyketide-type polyunsaturated fatty acid synthase, PfaA; Polyketide synthase, acyl transferase domain |
| CL | 1.5.4.3 Fatty acid biosynthesis -- initial steps |
| EC | |
| GO |
InterPro Biological Process: metabolic process (GO:0008152) Biological Process: fatty acid biosynthetic process (GO:0006633) Molecular Function: transferase activity (GO:0016740) Molecular Function: binding (GO:0005488) Molecular Function: [acyl-carrier-protein] S-malonyltransferase activity (GO:0004314) Molecular Function: catalytic activity (GO:0003824) Curated |
| PM | |
| AN | DNA sequence analysis and expression studies revealed that the fabD gene is part of an operon consisting of at least three genes involved in fatty acid biosynthesis. |
| CC | COG: [I] Lipid transport and metabolism; |
| CC | MODEL: XFF4834R |
| CC | STATUS: curated by brin (20100723) |
| MW | 32843.3 Da |
| SQ | 314 aa |
........10........20........30........40........50 |
|
|
XFF4834R_chr05620 lcl|XFF4834R_chr05840586_0639506_f3_XFF4834R-XFF4834R_chr05620 |
65 |
310 |
S=162 I=27 E=3.58744e-13 |
|
|
NP_641463.1 lcl|fabD-XAC1126 |
1 |
314 |
S=1496 I=93 E=3.09896e-174 |
acyl-carrier-protein S-malonyltransferase |
|
|
YP_362876.1 lcl|fabD-XCV1145 |
1 |
314 |
S=1489 I=92 E=2.22314e-173 |
acyl-carrier-protein S-malonyltransferase |
|
|
NP_636393.1 lcl|fabD-XCC1017 |
1 |
314 |
S=1419 I=87 E=7.8867e-165 |
acyl-carrier-protein S-malonyltransferase |
|
|
1 |
313 |
S=1233 I=74 E=2.12888e-142 |
probable (acyl-carrier protein) s-malonyltransferase |
|
|
NP_638961.1 lcl|mdcH-XCC3615 |
5 |
297 |
S=210 I=30 E=1.9028e-18 |
acyl-carrier-protein S-malonyltransferase |
|
|
NP_640919.1 lcl|mdcH-XAC0566 |
5 |
310 |
S=157 I=27 E=6.306e-12 |
acyl-carrier-protein S-malonyltransferase |
|
|
YP_362331.1 lcl|mdcH-XCV0600 |
5 |
310 |
S=155 I=25 E=9.41745e-12 |
acyl-carrier-protein S-malonyltransferase |
|
|
4 |
302 |
S=799 I=54 E=3.38196e-88 |
Malonyl CoA-acyl carrier protein transacylase |
Pubmed 18691538 |
|
|
||||||
|
|
4 |
309 |
S=766 I=51 E=3.74244e-84 |
Malonyl CoA-acyl carrier protein transacylase EC=2.3.1.39 ; Acyltransferase Fatty acid biosynthesis Lipid |
Pubmed 9642179 |
|
|
||||||
|
|
4 |
310 |
S=764 I=50 E=7.64978e-84 |
Malonyl CoA-acyl carrier protein transacylase EC=2.3.1.39 ; Acyltransferase Fatty acid biosynthesis Lipid |
||
|
||||||
|
|
4 |
302 |
S=758 I=52 E=3.51793e-83 |
Malonyl-CoA:ACP transacylase EC=2.3.1.39 ; Acyltransferase |
Pubmed 15060056 |
|
|
||||||
|
|
4 |
310 |
S=757 I=50 E=4.1157e-83 |
Malonyl-CoA-[acyl-carrier-protein] transacylase |
Pubmed 20088879 |
|
|
||||||
|
|
4 |
309 |
S=766 I=51 E=2.54872e-84 |
Malonyl CoA-acyl carrier protein transacylase EC=2.3.1.39 ; Acyltransferase Fatty acid biosynthesis Lipid |
|
|
4 |
310 |
S=764 I=50 E=5.20973e-84 |
Malonyl CoA-acyl carrier protein transacylase EC=2.3.1.39 ; Acyltransferase Fatty acid biosynthesis Lipid |
|
|
4 |
310 |
S=764 I=50 E=5.20973e-84 |
Malonyl CoA-acyl carrier protein transacylase EC=2.3.1.39 ; Acyltransferase Fatty acid biosynthesis Lipid |
|
|
4 |
310 |
S=757 I=50 E=3.45531e-83 |
Malonyl CoA-acyl carrier protein transacylase EC=2.3.1.39 ; Acyltransferase Fatty acid biosynthesis Lipid |
|
|
6 |
305 |
S=673 I=48 E=5.48696e-73 |
Malonyl CoA-acyl carrier protein transacylase EC=2.3.1.39 ; Acyltransferase Fatty acid biosynthesis Lipid |
|
IPR001227 [G3DSA:3.40.366.10] | 4 |
311 |
Acyl transferase domain |
|
[PTHR10982:SF4] | 6 |
305 |
- |
|
[PTHR10982] | 6 |
305 |
- |
|
IPR014043 [PF00698] | 8 |
279 |
Acyl transferase |
|
IPR020801 [SM00827] | 9 |
312 |
Polyketide synthase, acyl transferase domain |
|
IPR004410 [TIGR00128] | 4 |
294 |
Malonyl CoA-acyl carrier protein transacylase |
|
[seg] | 125 |
140 |
- |
|
|
11 |
301 |
S=392 I=39 E=4.83282e-40 |
|
|
192 |
304 |
S=249 I=44 E=1.20062e-22 |
|
|
161 |
259 |
S=166 I=39 E=1.32195e-12 |
|
|
141 |
199 |
S=165 I=56 E=1.58757e-12 |
|
|
6 |
305 |
S=147 I=20 E=2.18831e-10 |
|
|
202 |
310 |
S=134 I=27 E=1.02319e-08 |
|
|
7 |
264 |
S=122 I=18 E=2.8354e-07 |
|
|
63 |
124 |
S=118 I=47 E=7.72793e-07 |
|
|
6 |
97 |
S=117 I=39 E=1.19506e-06 |
|
|
59 |
311 |
S=109 I=25 E=8.72392e-06 |
|
IPR016035 [SSF52151] | 4 |
313 |
Acyl transferase/acyl hydrolase/lysophospholipase |
|
IPR016036 [SSF55048] | 130 |
199 |
Malonyl-CoA ACP transacylase, ACP-binding |
Suggestions Access unfiltered results
|
|
Set of Uniprot with relevant PubMed cross-references ncbi-blastp |
0 hits |
|
|
Swiss-Prot ncbi-blastp |
48 hits |
|
|
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp |
1 hits |
|
|
HAMAP scan |
0 hits |
|
|
IprScan |
9 hits |
Miscellaneous analyses
|
XFF4834R_chr27100 |
DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
|
|
XFF4834R_chr27120 |
| ID | accD |
| AC | XFF4834R_chr27110 |
| LT | XFF4834R_chr27110 |
| OR | XFF4834R_chr from 3125285 to 3126172 on strand - |
| DE | probable acetyl-CoA carboxylase, beta (carboxyltranferase) subunit |
| IP | Acetyl-CoA carboxylase carboxyl transferase, beta subunit |
| CL | 1.5.4.3 Fatty acid biosynthesis -- initial steps |
| EC | |
| GO |
InterPro Biological Process: fatty acid biosynthetic process (GO:0006633) Cellular Component: acetyl-CoA carboxylase complex (GO:0009317) Molecular Function: ligase activity (GO:0016874) Molecular Function: acetyl-CoA carboxylase activity (GO:0003989) Curated |
| PM | |
| AN | changement de start moins 6 aa direct correlation between the levels of transcription of the acc genes and the rate of cellular growth.accA and accD are located in complex gene clusters |
| CC | COG: [I] Lipid transport and metabolism; |
| CC | MODEL: XFF4834R |
| CC | STATUS: curated by darrasse (20110302) |
| MW | 31981.4 Da |
| SQ | 295 aa |
........10........20........30........40........50 |
|
|
XFF4834R_chr05580 lcl|XFF4834R_chr05800234_0636154_f2_XFF4834R-XFF4834R_chr05580 |
112 |
244 |
S=94 I=28 E=5.30739e-05 |
|
|
NP_643024.1 lcl|accD-XAC2715 |
1 |
295 |
S=1561 I=99 E=0 |
acetyl-CoA carboxylase subunit beta |
|
|
YP_364595.2 lcl|XCV2864 |
1 |
295 |
S=1555 I=99 E=0 |
acetyl-CoA carboxylase subunit beta |
|
|
NP_637888.1 lcl|accD-XCC2540 |
1 |
295 |
S=1457 I=96 E=1.75669e-169 |
acetyl-CoA carboxylase subunit beta |
|
|
1 |
295 |
S=1377 I=86 E=6.97407e-160 |
probable acetyl-coenzyme a carboxylase carboxyl transferase subunit beta (accase beta chain) protein |
|
|
NP_640915.1 lcl|mdcB-XAC0562 |
112 |
244 |
S=98 I=29 E=8.02885e-05 |
malonate decarboxylase subunit beta |
|
|
1 |
290 |
S=991 I=64 E=1.7561e-111 |
Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta EC=6.4.1.2 ; ATP-binding Cytoplasm Fatty acid biosynthesis Ligase Lipid Metal- |
||
|
||||||
|
|
1 |
290 |
S=979 I=64 E=5.94699e-110 |
Acetyl-CoA carboxylase ; Cytoplasm |
Pubmed 20088879 |
|
|
||||||
|
|
2 |
292 |
S=978 I=64 E=7.79253e-110 |
Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta EC=6.4.1.2 ; ATP-binding Cytoplasm Fatty acid biosynthesis Ligase Lipid Meta |
Pubmed 11145267 |
|
|
||||||
|
|
12 |
261 |
S=826 I=62 E=2.02047e-91 |
Carboxyl transferase subunit beta ; Cytoplasm |
Pubmed 18179430 |
|
|
||||||
|
|
12 |
259 |
S=818 I=62 E=1.65196e-90 |
Carboxyl transferase subunit beta ; Cytoplasm |
Pubmed 18179430 |
|
|
||||||
|
|
1 |
295 |
S=1561 I=99 E=1.1211e-180 |
Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta EC=6.4.1.2 ; ATP-binding Cytoplasm Fatty acid biosynthesis Ligase Lipid Metal-binding |
|
|
1 |
295 |
S=1555 I=99 E=5.72426e-180 |
Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta EC=6.4.1.2 ; ATP-binding Cytoplasm Fatty acid biosynthesis Ligase Lipid Metal-binding |
|
|
1 |
295 |
S=1552 I=98 E=1.23291e-179 |
Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta EC=6.4.1.2 ; ATP-binding Cytoplasm Fatty acid biosynthesis Ligase Lipid Metal-binding |
|
|
1 |
295 |
S=1552 I=98 E=1.23291e-179 |
Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta EC=6.4.1.2 ; ATP-binding Cytoplasm Fatty acid biosynthesis Ligase Lipid Metal-binding |
|
|
1 |
295 |
S=1552 I=98 E=1.23291e-179 |
Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta EC=6.4.1.2 ; ATP-binding Cytoplasm Fatty acid biosynthesis Ligase Lipid Metal-binding Nucleotide |
|
IPR000438 [PR01070] | 133 |
147 |
Acetyl-CoA carboxylase carboxyl transferase, beta subunit |
|
IPR000438 [PR01070] | 167 |
185 |
Acetyl-CoA carboxylase carboxyl transferase, beta subunit |
|
IPR000438 [PR01070] | 204 |
221 |
Acetyl-CoA carboxylase carboxyl transferase, beta subunit |
|
IPR000438 [PR01070] | 233 |
244 |
Acetyl-CoA carboxylase carboxyl transferase, beta subunit |
|
IPR000438 [PR01070] | 255 |
264 |
Acetyl-CoA carboxylase carboxyl transferase, beta subunit |
|
[G3DSA:3.90.226.10] | 17 |
290 |
- |
|
[MF_01395] | 1 |
288 |
- |
|
[PTHR22855:SF4] | 58 |
287 |
- |
|
[PTHR22855] | 58 |
287 |
- |
|
IPR000022 [PF01039] | 110 |
245 |
Carboxyl transferase |
|
IPR000438 [TIGR00515] | 1 |
289 |
Acetyl-CoA carboxylase carboxyl transferase, beta subunit |
|
IPR011762 [PS50980] | 69 |
262 |
Acetyl-coenzyme A carboxyltransferase, N-terminal |
|
|
218 |
293 |
S=267 I=66 E=7.34088e-25 |
|
|
1 |
48 |
S=172 I=58 E=2.66654e-13 |
|
|
47 |
104 |
S=163 I=57 E=3.01021e-12 |
|
|
50 |
109 |
S=156 I=50 E=1.96198e-11 |
|
|
183 |
268 |
S=153 I=37 E=4.85838e-11 |
|
|
183 |
217 |
S=149 I=89 E=1.61819e-10 |
|
|
105 |
154 |
S=140 I=52 E=1.79517e-09 |
|
|
155 |
220 |
S=135 I=41 E=6.63866e-09 |
|
|
126 |
182 |
S=128 I=47 E=5.92234e-08 |
|
|
161 |
222 |
S=127 I=47 E=7.96589e-08 |
|
[SSF52096] | 52 |
287 |
- |
Suggestions
