7 hits
XFF4834R_chr07540 | ribD | XFF4834R_chr07540 | fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino) uracil reductase |
XFF4834R_chr07560 | ribC | XFF4834R_chr07560 | probable riboflavin synthase, alpha subunit |
XFF4834R_chr07570 | ribB | XFF4834R_chr07570 | probable 3,4-dihydroxy-2-butanone-4-phosphate synthase |
XFF4834R_chr07580 | ribE | XFF4834R_chr07580 | probable riboflavin synthase beta chain |
XFF4834R_chr08520 | XFF4834R_chr09100491_0989678_r2_XFF4834R-XFF4834R_chr08520 | XFF4834R_chr08520 | Putative FMNH2-dependent monooxygenase |
XFF4834R_chr32860 | ribF | XFF4834R_chr32860 | probable riboflavin biosynthesis protein RibF |
XFF4834R_chr36840 | ribA | XFF4834R_chr36840 | probable GTP cyclohydrolase-2 |
![]() XFF4834R_chr07530 |
![]() DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
![]() |
![]() |
![]() XFF4834R_chr07550 |
ID | ribD |
AC | XFF4834R_chr07540 |
LT | XFF4834R_chr07540 |
OR | XFF4834R_chr from 869823 to 870932 on strand + |
DE | fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino) uracil reductase |
IP | CMP/dCMP deaminase, zinc-binding; Bacterial bifunctional deaminase-reductase, C-terminal; Riboflavin-specific deaminase, C-terminal |
CL | 1.5.3.9 Riboflavin (Vitamin B2), FAD, FMN GO:0009231 GO:0006747 GO:0009398 |
EC | |
GO |
InterPro Biological Process: oxidation reduction (GO:0055114) Biological Process: riboflavin biosynthetic process (GO:0009231) Molecular Function: diaminohydroxyphosphoribosylaminopyrimidine deaminase activity (GO:0008835) Molecular Function: 5-amino-6-(5-phosphoribosylamino)uracil reductase activity (GO:0008703) Molecular Function: NADP or NADPH binding (GO:0050661) Molecular Function: zinc ion binding (GO:0008270) Molecular Function: hydrolase activity (GO:0016787) Curated |
PM | |
AN | |
CC | COG: [H] Coenzyme transport and metabolism; |
CC | MODEL: XFF4834R |
CC | STATUS: validated by darrasse (20120326) |
MW | 38821.4 Da |
SQ | 369 aa |
........10........20........30........40........50 |
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XFF4834R_chr21440 lcl|tadA-XFF4834R_chr21440 |
9 |
156 |
S=126 I=35 E=9.61427e-09 |
tRNA-specific adenosine deaminase |
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NP_641099.1 lcl|ribD-XAC0746 |
1 |
369 |
S=1701 I=93 E=0 |
5-amino-6-uracil reductase |
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YP_362529.1 lcl|ribD-XCV0798 |
1 |
369 |
S=1626 I=88 E=0 |
riboflavin biosynthesis protein RibD (diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-[5-phosphoribosylamino]uracil reductase) |
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NP_636085.1 lcl|ribD-XCC0693 |
9 |
366 |
S=1592 I=86 E=0 |
riboflavin-specific deaminase/5-amino-6-uracil reductase |
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9 |
368 |
S=1357 I=77 E=2.65996e-157 |
probable riboflavin biosynthesis ribd oxidoreductase protein |
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NP_637525.1 lcl|XCC2169 |
12 |
158 |
S=133 I=35 E=5.19721e-09 |
hypothetical protein |
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NP_642364.1 lcl|XAC2038-XAC2038 |
6 |
158 |
S=132 I=36 E=7.17581e-09 |
hypothetical protein |
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YP_363930.1 lcl|XCV2199 |
6 |
158 |
S=130 I=33 E=1.35608e-08 |
putative cytidine / deoxycytidylate deaminase family protein |
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9 |
156 |
S=121 I=31 E=1.77544e-07 |
putative cytidine / deoxycytidylate deaminase protein |
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11 |
362 |
S=867 I=49 E=2.77115e-96 |
Diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino)uracil reductase EC=1.1.1.193 EC=3.5.4.26 ; Hydrolase O |
||
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11 |
362 |
S=867 I=49 E=2.77115e-96 |
Riboflavin biosynthesis protein ribD EC=3.5.4.26 EC=1.1.1.193 ; Hydrolase Metal-binding Multifunctional enzyme NADP Oxidoreductase Zinc |
Pubmed 1406588 |
|
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12 |
359 |
S=768 I=47 E=2.60369e-84 |
Pyrimidine deaminase/pyrimidine reductase |
Pubmed 12444973 |
|
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9 |
359 |
S=764 I=41 E=7.94806e-84 |
Pyrimidine deaminase/ pyrimidine reductase |
Pubmed 12444973 |
|
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12 |
365 |
S=688 I=42 E=1.11804e-74 |
Riboflavin biosynthesis protein ribD EC=3.5.4.26 EC=1.1.1.193 ; Hydrolase Metal-binding Multifunctional enzyme NADP Oxidoreductase Zinc |
Pubmed 9297088 |
|
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12 |
366 |
S=654 I=39 E=1.64968e-70 |
Riboflavin biosynthesis protein ribD EC=3.5.4.26 EC=1.1.1.193 ; Hydrolase Metal-binding Multifunctional enzyme NADP Oxidoreductase Zinc |
Pubmed 7934829 |
|
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4 |
366 |
S=586 I=35 E=2.60125e-62 |
Riboflavin biosynthesis protein ribD EC=3.5.4.26 EC=1.1.1.193 ; Hydrolase Metal-binding Multifunctional enzyme NADP Oxidoreductase Zinc |
Pubmed 8522537 |
|
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11 |
362 |
S=561 I=35 E=3.1161e-59 |
Riboflavin-specific deaminase/reductase |
Pubmed 15466513 |
|
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11 |
321 |
S=433 I=39 E=1.01607e-43 |
Probable riboflavin biosynthesis protein (Deaminase/reductase) Riboflavin-specific deaminase/reductase |
Pubmed 12036276 |
|
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19 |
327 |
S=410 I=35 E=6.44074e-41 |
Riboflavin-specific deaminase / reductase |
Pubmed 10488170 |
|
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11 |
362 |
S=867 I=49 E=1.90664e-96 |
Riboflavin biosynthesis protein ribD EC=3.5.4.26 EC=1.1.1.193 ; Hydrolase Metal-binding Multifunctional enzyme NADP Oxidoreductase Zinc |
||
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9 |
365 |
S=783 I=45 E=2.70327e-86 |
Riboflavin biosynthesis protein ribD EC=3.5.4.26 EC=1.1.1.193 ; Hydrolase Metal-binding Multifunctional enzyme NADP Oxidoreductase Zinc |
||
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[G3DSA:3.40.140.10] | 12 |
153 |
- |
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[G3DSA:3.40.430.10] | 279 |
363 |
- |
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IPR002125 [PF00383] | 9 |
109 |
CMP/dCMP deaminase, zinc-binding |
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IPR002734 [PF01872] | 156 |
361 |
Bacterial bifunctional deaminase-reductase, C-terminal |
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IPR004794 [TIGR00326] | 16 |
362 |
Riboflavin biosynthesis protein RibD |
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IPR011549 [TIGR00227] | 154 |
365 |
Riboflavin-specific deaminase, C-terminal |
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IPR016192 [PS00903] | 59 |
97 |
APOBEC/CMP deaminase, zinc-binding |
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[seg] | 64 |
77 |
- |
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12 |
152 |
S=177 I=36 E=6.51821e-14 |
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14 |
84 |
S=175 I=53 E=1.00798e-13 |
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155 |
208 |
S=171 I=63 E=3.27063e-13 |
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98 |
153 |
S=166 I=59 E=1.1886e-12 |
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295 |
363 |
S=157 I=49 E=1.48978e-11 |
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269 |
365 |
S=149 I=56 E=1.34067e-10 |
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85 |
217 |
S=149 I=22 E=1.69651e-10 |
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86 |
136 |
S=134 I=54 E=8.8073e-09 |
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276 |
327 |
S=129 I=50 E=3.94568e-08 |
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298 |
365 |
S=126 I=40 E=8.72356e-08 |
Access unfiltered results
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Set of Uniprot with relevant PubMed cross-references ncbi-blastp |
21 hits |
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Swiss-Prot ncbi-blastp |
25 hits |
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Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp |
1 hits |
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HAMAP scan |
0 hits |
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IprScan |
8 hits |
Miscellaneous analyses
![]() XFF4834R_chr07550 |
![]() DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
![]() |
![]() |
![]() XFF4834R_chr07570 |
ID | ribC |
AC | XFF4834R_chr07560 |
LT | XFF4834R_chr07560 |
OR | XFF4834R_chr from 872219 to 872821 on strand + |
DE | probable riboflavin synthase, alpha subunit |
IP | Lumazine-binding protein; Riboflavin synthase-like beta-barrel |
CL | 1.5.3.9 Riboflavin (Vitamin B2), FAD, FMN GO:0009231 GO:0006747 GO:0009398 |
EC | |
GO |
InterPro Curated |
PM | |
AN | |
CC | COG: [H] Coenzyme transport and metabolism; |
CC | MODEL: XFF4834R |
CC | STATUS: curated by pieretti (20100330) |
MW | 20909.5 Da |
SQ | 200 aa |
........10........20........30........40........50 |
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YP_362531.1 lcl|ribE-XCV0800 |
1 |
200 |
S=940 I=92 E=4.3446e-107 |
riboflavin synthase subunit alpha |
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NP_641101.1 lcl|ribE-XAC0748 |
1 |
200 |
S=940 I=92 E=4.3446e-107 |
riboflavin synthase subunit alpha |
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NP_636087.1 lcl|ribE-XCC0695 |
1 |
200 |
S=874 I=85 E=3.88696e-99 |
riboflavin synthase subunit alpha |
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1 |
194 |
S=775 I=83 E=3.71631e-87 |
putative riboflavin synthase, alpha subunit protein |
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1 |
194 |
S=465 I=46 E=5.21912e-48 |
Riboflavin synthase |
Pubmed 12444973 |
|
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1 |
199 |
S=441 I=44 E=3.87051e-45 |
Riboflavin synthase |
Pubmed 12444973 |
|
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1 |
194 |
S=432 I=44 E=4.56404e-44 |
Riboflavin synthase alpha chain EC=2.5.1.9 ; Repeat biosynthesis Transferase |
Pubmed 8144477 |
|
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1 |
194 |
S=432 I=44 E=5.6756e-44 |
RibE |
Pubmed 15034641 |
|
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1 |
194 |
S=430 I=43 E=8.32949e-44 |
RibE |
||
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1 |
194 |
S=430 I=43 E=8.85368e-44 |
RibE |
Pubmed 16156737 |
|
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1 |
194 |
S=430 I=44 E=9.1679e-44 |
RibE |
Pubmed 16156737 |
|
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1 |
195 |
S=427 I=43 E=2.31015e-43 |
RibE |
Pubmed 18359809 |
|
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1 |
195 |
S=422 I=43 E=8.39541e-43 |
RibE |
||
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1 |
195 |
S=421 I=42 E=1.26476e-42 |
RibE Riboflavin synthetase |
||
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1 |
194 |
S=432 I=44 E=3.16285e-44 |
Riboflavin synthase alpha chain EC=2.5.1.9 ; Repeat biosynthesis Transferase |
||
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1 |
199 |
S=420 I=43 E=8.99696e-43 |
Riboflavin synthase alpha chain EC=2.5.1.9 ; Repeat biosynthesis Transferase |
||
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1 |
194 |
S=409 I=42 E=2.45009e-41 |
Riboflavin synthase alpha chain EC=2.5.1.9 ; Repeat biosynthesis Transferase |
||
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1 |
194 |
S=380 I=39 E=7.72524e-38 |
Riboflavin synthase alpha chain EC=2.5.1.9 ; Repeat biosynthesis Transferase |
||
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1 |
194 |
S=364 I=39 E=6.31098e-36 |
Riboflavin synthase alpha chain EC=2.5.1.9 ; Repeat biosynthesis Transferase |
||
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[G3DSA:2.40.30.20] | 1 |
97 |
- |
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[G3DSA:2.40.30.20] | 102 |
195 |
- |
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IPR001783 [PIRSF000498] | 1 |
197 |
Lumazine-binding protein |
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IPR001783 [PTHR21098] | 1 |
194 |
Lumazine-binding protein |
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IPR001783 [PF00677] | 3 |
87 |
Lumazine-binding protein |
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IPR001783 [PF00677] | 100 |
184 |
Lumazine-binding protein |
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IPR001783 [TIGR00187] | 1 |
200 |
Lumazine-binding protein |
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[seg] | 53 |
64 |
- |
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96 |
194 |
S=260 I=47 E=5.77256e-24 |
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IPR017938 [SSF63380] | 94 |
195 |
Riboflavin synthase-like beta-barrel |
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IPR017938 [SSF63380] | 1 |
93 |
Riboflavin synthase-like beta-barrel |
Access unfiltered results
Miscellaneous analyses
![]() XFF4834R_chr07560 |
![]() DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
![]() |
![]() |
![]() XFF4834R_chr07580 |
ID | ribB |
AC | XFF4834R_chr07570 |
LT | XFF4834R_chr07570 |
OR | XFF4834R_chr from 872818 to 873957 on strand + |
DE | probable 3,4-dihydroxy-2-butanone-4-phosphate synthase |
IP | DHBP synthase RibB |
CL | 1.5.3.9 Riboflavin (Vitamin B2), FAD, FMN GO:0009231 GO:0006747 GO:0009398 |
EC | |
GO |
InterPro 4-dihydroxy-2-butanone-4-phosphate synthase activity (GO:0008686) Biological Process: riboflavin biosynthetic process (GO:0009231) Molecular Function: GTP cyclohydrolase II activity (GO:0003935) Curated |
PM | |
AN | |
CC | COG: [H] Coenzyme transport and metabolism; |
CC | MODEL: XFF4834R |
CC | STATUS: curated by pieretti (20100330) |
MW | 41131.5 Da |
SQ | 379 aa |
........10........20........30........40........50 |
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NP_641102.1 lcl|ribA-XAC0749 |
1 |
379 |
S=1965 I=99 E=0 |
3,4-dihydroxy-2-butanone 4-phosphate synthase |
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YP_362532.1 lcl|ribB-XCV0801 |
1 |
379 |
S=1954 I=99 E=0 |
riboflavin biosynthesis protein RibB (GTP cyclohydrolase II/3,4-dihydroxy-2-butanone 4-phosphate synthase) |
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NP_636088.1 lcl|ribA-XCC0696 |
1 |
371 |
S=1849 I=95 E=0 |
GTP cyclohydrolase II/3,4-dihydroxy-2-butanone 4- phosphate synthase |
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1 |
356 |
S=1634 I=88 E=0 |
putative gtp cyclohydrolase II /3,4-dihydroxy-2-butanone 4-phosphate synthase, riboflavin biosynthesis protein |
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1 |
365 |
S=986 I=52 E=1.09509e-110 |
RibB ; Metal-binding Riboflavin biosynthesis |
Pubmed 18359809 |
|
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1 |
362 |
S=985 I=55 E=1.33826e-110 |
GTP cyclohydrolase II/ 3,4-dihydroxy-2-butanone 4-phosphate synthase ; Metal-binding Riboflavin biosynthesis |
Pubmed 12444973 |
|
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1 |
362 |
S=974 I=50 E=2.46168e-109 |
RibB ; Metal-binding Riboflavin biosynthesis |
||
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1 |
365 |
S=970 I=51 E=8.86847e-109 |
DHBP synthetase ; Metal-binding Riboflavin biosynthesis |
Pubmed 11396941 |
|
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1 |
365 |
S=969 I=51 E=1.29023e-108 |
RibB ; Metal-binding Riboflavin biosynthesis |
||
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1 |
365 |
S=967 I=51 E=2.13937e-108 |
RibB ; Metal-binding Riboflavin biosynthesis |
||
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1 |
362 |
S=967 I=52 E=2.177e-108 |
RibB ; Metal-binding Riboflavin biosynthesis |
Pubmed 17586644 |
|
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1 |
362 |
S=963 I=52 E=6.36208e-108 |
RibB ; Metal-binding Riboflavin biosynthesis |
Pubmed 17586644 |
|
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1 |
362 |
S=962 I=52 E=8.40944e-108 |
3,4-dihydroxy-2-butanone 4-phosphate synthase EC=4.1.99.12 ; Lyase Magnesium Manganese Metal-binding Riboflavin biosynthesis |
Pubmed 1339274 |
|
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1 |
362 |
S=960 I=52 E=1.53474e-107 |
RibB ; Metal-binding Riboflavin biosynthesis |
Pubmed 17586644 |
|
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1 |
362 |
S=962 I=52 E=5.79056e-108 |
3,4-dihydroxy-2-butanone 4-phosphate synthase EC=4.1.99.12 ; Lyase Magnesium Manganese Metal-binding Riboflavin biosynthesis |
||
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1 |
362 |
S=957 I=55 E=2.05005e-107 |
3,4-dihydroxy-2-butanone 4-phosphate synthase EC=4.1.99.12 ; Lyase Magnesium Manganese Metal-binding Riboflavin biosynthesis |
||
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1 |
362 |
S=926 I=50 E=1.14922e-103 |
3,4-dihydroxy-2-butanone 4-phosphate synthase EC=4.1.99.12 ; Lyase Magnesium Manganese Metal-binding Riboflavin biosynthesis |
||
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1 |
362 |
S=922 I=53 E=3.99829e-103 |
3,4-dihydroxy-2-butanone 4-phosphate synthase EC=4.1.99.12 ; Lyase Magnesium Manganese Metal-binding Riboflavin biosynthesis |
||
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2 |
364 |
S=850 I=49 E=2.29118e-94 |
3,4-dihydroxy-2-butanone 4-phosphate synthase EC=4.1.99.12 ; Lyase Magnesium Manganese Metal-binding Riboflavin biosynthesis |
||
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IPR017945 [G3DSA:3.90.870.10] | 3 |
212 |
DHBP synthase RibB-like alpha/beta domain |
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IPR016299 [PIRSF001259] | 1 |
378 |
Riboflavin biosynthesis protein RibA |
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[PTHR21327:SF1] | 33 |
354 |
- |
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[PTHR21327] | 33 |
354 |
- |
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IPR000422 [PF00926] | 7 |
199 |
DHBP synthase RibB |
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IPR000926 [PF00925] | 206 |
362 |
GTP cyclohydrolase II |
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IPR000422 [TIGR00506] | 2 |
199 |
DHBP synthase RibB |
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6 |
199 |
S=646 I=65 E=9.51406e-71 |
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219 |
292 |
S=124 I=41 E=1.61887e-07 |
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IPR017945 [SSF55821] | 1 |
203 |
DHBP synthase RibB-like alpha/beta domain |
Access unfiltered results
Miscellaneous analyses
![]() XFF4834R_chr07570 |
![]() DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
![]() |
![]() |
![]() XFF4834R_chr07590 |
ID | ribE |
AC | XFF4834R_chr07580 |
LT | XFF4834R_chr07580 |
OR | XFF4834R_chr from 874290 to 874754 on strand + |
DE | probable riboflavin synthase beta chain |
IP | 6,7-dimethyl-8-ribityllumazine synthase |
CL | 1.5.3.9 Riboflavin (Vitamin B2), FAD, FMN GO:0009231 GO:0006747 GO:0009398 |
EC | |
GO |
InterPro Biological Process: riboflavin biosynthetic process (GO:0009231) Cellular Component: riboflavin synthase complex (GO:0009349) Curated |
PM | |
AN | |
CC | COG: [H] Coenzyme transport and metabolism; |
CC | MODEL: XFF4834R |
CC | STATUS: curated by pieretti (20100330) |
MW | 16241.3 Da |
SQ | 154 aa |
........10........20........30........40........50 |
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YP_362533.1 lcl|ribH-XCV0802 |
1 |
154 |
S=724 I=92 E=3.57309e-81 |
riboflavin synthase subunit beta |
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NP_641103.1 lcl|ribH-XAC0750 |
1 |
154 |
S=724 I=92 E=3.57309e-81 |
riboflavin synthase subunit beta |
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NP_636089.1 lcl|ribH-XCC0697 |
1 |
154 |
S=698 I=88 E=6.39223e-78 |
riboflavin synthase subunit beta |
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1 |
154 |
S=550 I=73 E=4.60055e-60 |
putative 6,7-dimethyl-8-ribityllumazine synthase, riboflavin synthase beta subunit protein |
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1 |
151 |
S=325 I=44 E=2.62231e-31 |
6,7-dimethyl-8-ribityllumazine synthase EC=2.5.1.9 ; Riboflavin biosynthesis Transferase |
Pubmed 8522537 |
|
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3 |
151 |
S=323 I=44 E=4.74424e-31 |
6,7-dimethyl-8-ribityllumazine synthase EC=2.5.1.9 ; Riboflavin biosynthesis Transferase |
Pubmed 14729744 |
|
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3 |
151 |
S=323 I=44 E=4.74424e-31 |
6,7-dimethyl-8-ribityllumazine synthase EC=2.5.1.9 ; Riboflavin biosynthesis Transferase |
Pubmed 15590099 |
|
![]() |
3 |
151 |
S=323 I=44 E=4.74424e-31 |
6,7-dimethyl-8-ribityllumazine synthase EC=2.5.1.9 ; Riboflavin biosynthesis Transferase |
Pubmed 14729744 |
|
![]() |
3 |
151 |
S=323 I=44 E=4.74424e-31 |
6,7-dimethyl-8-ribityllumazine synthase EC=2.5.1.9 ; Riboflavin biosynthesis Transferase |
Pubmed 14729744 |
|
![]() |
1 |
150 |
S=305 I=41 E=7.85342e-29 |
6,7-dimethyl-8-ribityllumazine synthase EC=2.5.1.9 ; Riboflavin biosynthesis Transferase |
Pubmed 15466513 |
|
![]() |
1 |
153 |
S=301 I=42 E=2.48243e-28 |
6,7-dimethyl-8-ribityllumazine synthase EC=2.5.1.9 ; Riboflavin biosynthesis Transferase |
Pubmed 19014707 |
|
![]() |
1 |
150 |
S=300 I=42 E=2.95534e-28 |
6,7-dimethyl-8-ribityllumazine synthase EC=2.5.1.9 ; Riboflavin biosynthesis Transferase |
Pubmed 12444973 |
|
![]() |
1 |
154 |
S=300 I=44 E=3.4275e-28 |
6,7-dimethyl-8-ribityllumazine synthase EC=2.5.1.9 ; Riboflavin biosynthesis Transferase |
Pubmed 17586644 |
|
![]() |
1 |
154 |
S=300 I=44 E=3.4275e-28 |
6,7-dimethyl-8-ribityllumazine synthase EC=2.5.1.9 ; Riboflavin biosynthesis Transferase |
Pubmed 17586644 |
|
![]() |
1 |
154 |
S=724 I=92 E=7.98407e-80 |
6,7-dimethyl-8-ribityllumazine synthase EC=2.5.1.9 ; Riboflavin biosynthesis Transferase |
||
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1 |
154 |
S=724 I=92 E=7.98407e-80 |
6,7-dimethyl-8-ribityllumazine synthase EC=2.5.1.9 ; Riboflavin biosynthesis Transferase |
||
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1 |
154 |
S=716 I=91 E=9.09199e-79 |
6,7-dimethyl-8-ribityllumazine synthase EC=2.5.1.9 ; Riboflavin biosynthesis Transferase |
||
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1 |
154 |
S=716 I=91 E=9.09199e-79 |
6,7-dimethyl-8-ribityllumazine synthase EC=2.5.1.9 ; Riboflavin biosynthesis Transferase |
||
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1 |
154 |
S=698 I=88 E=1.42834e-76 |
6,7-dimethyl-8-ribityllumazine synthase EC=2.5.1.9 ; Riboflavin biosynthesis Transferase |
||
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IPR002180 [G3DSA:3.40.50.960] | 2 |
153 |
6,7-dimethyl-8-ribityllumazine synthase |
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IPR002180 [PTHR21058] | 2 |
154 |
6,7-dimethyl-8-ribityllumazine synthase |
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IPR002180 [PF00885] | 11 |
151 |
6,7-dimethyl-8-ribityllumazine synthase |
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IPR002180 [TIGR00114] | 13 |
150 |
6,7-dimethyl-8-ribityllumazine synthase |
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[seg] | 117 |
128 |
- |
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14 |
136 |
S=300 I=48 E=6.86924e-29 |
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IPR002180 [SSF52121] | 1 |
154 |
6,7-dimethyl-8-ribityllumazine synthase |
Access unfiltered results
Miscellaneous analyses
![]() XFF4834R_chr08510 |
![]() DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
![]() |
![]() |
![]() XFF4834R_chr08530 |
ID | XFF4834R_chr09100491_0989678_r2_XFF4834R-XFF4834R_chr08520 |
AC | XFF4834R_chr08520 |
LT | XFF4834R_chr08520 |
OR | XFF4834R_chr from 988491 to 989678 on strand - |
DE | Putative FMNH2-dependent monooxygenase |
IP | Acyl-CoA dehydrogenase/oxidase; Acyl-CoA dehydrogenase, type 2, C-terminal; Acyl-CoA oxidase/dehydrogenase, type1/2, C-terminal |
CL | 1.5.3.9 Riboflavin (Vitamin B2), FAD, FMN GO:0009231 GO:0006747 GO:0009398 |
EC | |
GO |
InterPro Biological Process: metabolic process (GO:0008152) Biological Process: oxidation reduction (GO:0055114) Molecular Function: acyl-CoA dehydrogenase activity (GO:0003995) Molecular Function: oxidoreductase activity (GO:0016491) Molecular Function: FAD binding (GO:0050660) acting on the CH-CH group of donors (GO:0016627) Curated |
PM | |
AN | le gene s appelle msuC chez xac, sfnC chez P.putida, msuC chez P.aeruginosa aucun n existe chez coli... |
CC | COG: [I] Lipid transport and metabolism; |
CC | MODEL: XFF4834R |
CC | STATUS: curated by brin (20100723) |
MW | 43706.1 Da |
SQ | 395 aa |
........10........20........30........40........50 |
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XFF4834R_chr08590 lcl|XFF4834R_chr09180369_0998661_f1_XFF4834R-XFF4834R_chr08590 |
45 |
395 |
S=256 I=27 E=2.18438e-24 |
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NP_641198.1 lcl|msuC-XAC0846 |
1 |
395 |
S=1902 I=93 E=0 |
FMNH2-dependent monooxygenase |
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NP_641206.1 lcl|XAC0854-XAC0854 |
45 |
395 |
S=253 I=27 E=2.01203e-23 |
hypothetical protein |
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14 |
395 |
S=1387 I=69 E=2.8218e-159 |
Putative FMNH2-dependent monooxygenase |
||
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5 |
376 |
S=1342 I=69 E=8.9602e-154 |
Putative FMNH2-dependent monooxygenase |
Pubmed 10049377 |
|
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14 |
395 |
S=733 I=42 E=4.90588e-80 |
Thermophilic dibenzothiophene desulfurization enzyme C |
Pubmed 10733908 |
|
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12 |
395 |
S=689 I=40 E=1.06146e-74 |
Dibenzothiophene desulfurization enzyme C ; FAD Flavoprotein Oxidoreductase |
Pubmed 15221222 |
|
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12 |
395 |
S=688 I=40 E=1.47839e-74 |
Dibenzothiophene desulfurization enzyme C ; FAD Flavoprotein Oxidoreductase |
Pubmed 16820450 |
|
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12 |
395 |
S=688 I=40 E=1.00539e-74 |
Dibenzothiophene desulfurization enzyme C ; Oxidoreductase Plasmid |
||
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14 |
371 |
S=150 I=24 E=1.60676e-09 |
Putative acyl-CoA dehydrogenase ydbM EC=1.3.99.- ; FAD Flavoprotein Oxidoreductase |
||
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IPR013786 [G3DSA:1.10.540.10] | 7 |
119 |
Acyl-CoA dehydrogenase/oxidase, N-terminal |
![]() |
IPR006091 [G3DSA:2.40.110.10] | 125 |
219 |
Acyl-CoA oxidase/dehydrogenase, central domain |
![]() |
IPR013764 [G3DSA:1.20.140.10] | 231 |
370 |
Acyl-CoA oxidase/dehydrogenase, type1/2, C-terminal |
![]() |
[PTHR10909:SF8] | 76 |
370 |
- |
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[PTHR10909] | 76 |
370 |
- |
![]() |
IPR013107 [PF08028] | 235 |
369 |
Acyl-CoA dehydrogenase, type 2, C-terminal |
![]() |
IPR006092 [PF02771] | 21 |
115 |
Acyl-CoA dehydrogenase, N-terminal |
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[seg] | 204 |
215 |
- |
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[seg] | 317 |
329 |
- |
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90 |
203 |
S=254 I=47 E=2.84797e-23 |
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338 |
389 |
S=153 I=60 E=4.63461e-11 |
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283 |
316 |
S=128 I=76 E=4.16378e-08 |
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231 |
283 |
S=127 I=51 E=5.50371e-08 |
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IPR009100 [SSF56645] | 2 |
217 |
Acyl-CoA dehydrogenase/oxidase |
![]() |
IPR009075 [SSF47203] | 231 |
388 |
Acyl-CoA dehydrogenase/oxidase C-terminal |
Access unfiltered results
![]() |
Set of Uniprot with relevant PubMed cross-references ncbi-blastp |
17 hits |
![]() |
Swiss-Prot ncbi-blastp |
2 hits |
![]() |
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp |
1 hits |
![]() |
HAMAP scan |
0 hits |
![]() |
IprScan |
11 hits |
Miscellaneous analyses
![]() XFF4834R_chr32850 |
![]() DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
![]() |
![]() |
![]() XFF4834R_chr32870 |
ID | ribF |
AC | XFF4834R_chr32860 |
LT | XFF4834R_chr32860 |
OR | XFF4834R_chr from 3785297 to 3786319 on strand - |
DE | probable riboflavin biosynthesis protein RibF |
IP | Riboflavin kinase/FAD synthetase; Rossmann-like alpha/beta/alpha sandwich fold; FAD synthetase; Riboflavin kinase |
CL | 1.5.3.9 Riboflavin (Vitamin B2), FAD, FMN GO:0009231 GO:0006747 GO:0009398 |
EC | |
GO |
InterPro Biological Process: riboflavin biosynthetic process (GO:0009231) Molecular Function: riboflavin kinase activity (GO:0008531) Molecular Function: FMN adenylyltransferase activity (GO:0003919) Curated |
PM | |
AN | |
CC | COG: [H] Coenzyme transport and metabolism; |
CC | MODEL: XFF4834R |
CC | STATUS: curated by pieretti (20100409) |
MW | 37126.2 Da |
SQ | 340 aa |
........10........20........30........40........50 |
Access unfiltered results
![]() |
Set of Uniprot with relevant PubMed cross-references ncbi-blastp |
48 hits |
![]() |
Swiss-Prot ncbi-blastp |
18 hits |
![]() |
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp |
0 hits |
![]() |
HAMAP scan |
0 hits |
![]() |
IprScan |
8 hits |
Miscellaneous analyses
![]() XFF4834R_chr36830 |
![]() DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
![]() |
![]() |
![]() XFF4834R_chr36850 |
ID | ribA |
AC | XFF4834R_chr36840 |
LT | XFF4834R_chr36840 |
OR | XFF4834R_chr from 4261076 to 4262209 on strand + |
DE | probable GTP cyclohydrolase-2 |
IP | Riboflavin biosynthesis protein RibA |
CL | 1.5.3.9 Riboflavin (Vitamin B2), FAD, FMN GO:0009231 GO:0006747 GO:0009398 |
EC | |
GO |
InterPro Biological Process: riboflavin biosynthetic process (GO:0009231) Molecular Function: GTP cyclohydrolase II activity (GO:0003935) Curated |
PM | |
AN | |
CC | COG: [H] Coenzyme transport and metabolism; |
CC | MODEL: XFF4834R |
CC | STATUS: curated by pieretti (20100409) |
MW | 39467.5 Da |
SQ | 377 aa |
........10........20........30........40........50 |
![]() |
RIBA_MF_00179 | raw_score=5109 norm_score=38.273 | GTP cyclohydrolase-2 [ribA]. |
![]() |
NP_644098.1 lcl|ribA-XAC3792 |
1 |
377 |
S=1689 I=89 E=0 |
GTP cyclohydrolase |
![]() |
YP_365647.1 lcl|XCV3916 |
1 |
377 |
S=1672 I=88 E=0 |
GTP cyclohydrolase |
![]() |
NP_639085.1 lcl|ribA-XCC3740 |
1 |
377 |
S=1535 I=81 E=8.64723e-179 |
GTP cyclohydrolase |
![]() |
1 |
377 |
S=1248 I=68 E=4.03754e-144 |
putative gtp cyclohydrolase II, riboflavin biosynthesis protein |
![]() |
20 |
369 |
S=388 I=28 E=2.6025e-38 |
GTP cyclohydrolase-2 EC=3.5.4.25 ; Riboflavin biosynthesis |
Pubmed 18582562 |
|
![]() |
183 |
365 |
S=384 I=45 E=9.05444e-38 |
GTP cyclohydrolase-2 EC=3.5.4.25 ; GTP-binding Metal-binding Nucleotide-binding Riboflavin biosynthesis Zinc |
Pubmed 7883178 |
|
![]() |
11 |
369 |
S=376 I=27 E=9.04688e-37 |
GTP cyclohydrolase-2 EC=3.5.4.25 ; Riboflavin biosynthesis |
Pubmed 11053403 |
|
![]() |
178 |
367 |
S=375 I=40 E=9.28664e-37 |
Riboflavin biosynthesis protein ribBA EC=4.1.99.12 EC=3.5.4.25 ; GTP-binding Hydrolase Lyase Magnesium Manganese Metal-binding Multifunctional enzyme |
Pubmed 18391199 |
|
![]() |
14 |
369 |
S=369 I=27 E=5.40421e-36 |
GTP cyclohydrolase-2 EC=3.5.4.25 ; Riboflavin biosynthesis |
Pubmed 11053403 |
|
![]() |
176 |
368 |
S=368 I=40 E=7.52696e-36 |
GTP cyclohydrolase II/3,4-dihydroxy-2-butanone 4-phosphate synthase ; Metal-binding Riboflavin biosynthesis |
Pubmed 15466513 |
|
![]() |
196 |
367 |
S=356 I=43 E=2.10409e-34 |
Riboflavin biosynthesis protein ribBA EC=4.1.99.12 EC=3.5.4.25 ; GTP-binding Hydrolase Lyase Magnesium Manganese Metal-binding Multifunctional enzyme |
Pubmed 9297088 |
|
![]() |
179 |
372 |
S=355 I=43 E=2.80556e-34 |
GTP cyclohydrolase-2 EC=3.5.4.25 ; Riboflavin biosynthesis |
Pubmed 17541777 |
|
![]() |
191 |
369 |
S=354 I=39 E=3.67621e-34 |
GTP cyclohydrolase-2 EC=3.5.4.25 ; Riboflavin biosynthesis |
Pubmed 11396941 |
|
![]() |
180 |
368 |
S=350 I=42 E=1.16204e-33 |
GTP cyclohydrolase-2 EC=3.5.4.25 ; GTP-binding Metal-binding Nucleotide-binding Riboflavin biosynthesis Zinc |
Pubmed 8320220 |
|
![]() |
1 |
377 |
S=1192 I=62 E=8.12636e-136 |
GTP cyclohydrolase-2 EC=3.5.4.25 ; GTP-binding Metal-binding Nucleotide-binding Riboflavin biosynthesis Zinc |
||
![]() |
1 |
377 |
S=1192 I=62 E=8.26931e-136 |
GTP cyclohydrolase-2 EC=3.5.4.25 ; GTP-binding Metal-binding Nucleotide-binding Riboflavin biosynthesis Zinc |
||
![]() |
183 |
365 |
S=384 I=45 E=6.23501e-38 |
GTP cyclohydrolase-2 EC=3.5.4.25 ; GTP-binding Metal-binding Nucleotide-binding Riboflavin biosynthesis Zinc |
||
![]() |
178 |
367 |
S=375 I=40 E=6.3949e-37 |
Riboflavin biosynthesis protein ribBA EC=4.1.99.12 EC=3.5.4.25 ; GTP-binding Hydrolase Lyase Magnesium Manganese Metal-binding Multifunctional enzyme |
||
![]() |
189 |
372 |
S=372 I=40 E=1.91838e-36 |
Riboflavin biosynthesis protein ribBA EC=4.1.99.12 EC=3.5.4.25 ; GTP-binding Hydrolase Lyase Magnesium Manganese Metal-binding Multifunctional enzyme |
||
![]() |
[MF_00179] | 173 |
369 |
- |
![]() |
IPR016299 [PIRSF001259] | 1 |
372 |
Riboflavin biosynthesis protein RibA |
![]() |
IPR000926 [PF00925] | 176 |
344 |
GTP cyclohydrolase II |
![]() |
[seg] | 58 |
67 |
- |
![]() |
[seg] | 129 |
143 |
- |
![]() |
[seg] | 310 |
321 |
- |
![]() |
13 |
190 |
S=613 I=72 E=8.48306e-67 |
![]() |
180 |
299 |
S=277 I=47 E=4.2258e-26 |
![]() |
344 |
377 |
S=159 I=94 E=8.53738e-12 |
![]() |
344 |
377 |
S=115 I=62 E=2.01546e-06 |
![]() |
285 |
338 |
S=104 I=44 E=4.81574e-05 |
Access unfiltered results
Miscellaneous analyses