Xanthomonas fuscans subsp. fuscans

7 hits

  1. XFF4834R_chr07540ribDXFF4834R_chr07540fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino) uracil reductase
  2. XFF4834R_chr07560ribCXFF4834R_chr07560probable riboflavin synthase, alpha subunit
  3. XFF4834R_chr07570ribBXFF4834R_chr07570probable 3,4-dihydroxy-2-butanone-4-phosphate synthase
  4. XFF4834R_chr07580ribEXFF4834R_chr07580probable riboflavin synthase beta chain
  5. XFF4834R_chr08520XFF4834R_chr09100491_0989678_r2_XFF4834R-XFF4834R_chr08520XFF4834R_chr08520Putative FMNH2-dependent monooxygenase
  6. XFF4834R_chr32860ribFXFF4834R_chr32860probable riboflavin biosynthesis protein RibF
  7. XFF4834R_chr36840ribAXFF4834R_chr36840probable GTP cyclohydrolase-2

ribD XFF4834R_chr07540
XFF4834R_chr07530
XFF4834R_chr07530 		Cluster
DrawMap 		XML file

FASTA file 		Extract
Sequence 		Codon
Usage 		Framed OrthoMCL XFF4834R_chr07550
XFF4834R_chr07550
ID ribD
AC XFF4834R_chr07540
LT XFF4834R_chr07540
OR XFF4834R_chr from 869823 to 870932 on strand +
DE fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino) uracil reductase
IP CMP/dCMP deaminase, zinc-binding; Bacterial bifunctional deaminase-reductase, C-terminal; Riboflavin-specific deaminase, C-terminal
CL 1.5.3.9 Riboflavin (Vitamin B2), FAD, FMN GO:0009231 GO:0006747 GO:0009398
EC
GO InterPro
Biological Process: riboflavin biosynthetic process (GO:0009231)
Biological Process: oxidation reduction (GO:0055114)
Molecular Function: NADP or NADPH binding (GO:0050661)
Molecular Function: diaminohydroxyphosphoribosylaminopyrimidine deaminase activity (GO:0008835)
Molecular Function: 5-amino-6-(5-phosphoribosylamino)uracil reductase activity (GO:0008703)
Molecular Function: zinc ion binding (GO:0008270)
Molecular Function: hydrolase activity (GO:0016787)

Curated
PM
AN
CC COG: [H] Coenzyme transport and metabolism;
CC MODEL: XFF4834R
CC STATUS: validated by darrasse (20120326)
MW 38821.4 Da
SQ 369 aa
  
........10........20........30........40........50
         |         |         |         |         |
MSKAATIGSADDHRWMAQALRLAERGAYTTRPNPMVGCVIVRDGVCVGEG
FHQRAGGPHAEVFALRAAGELARGATAYVTLEPCAHYGRTPPCALALIEA
GVMRVVAAMADPFPQVNGGGFALLREAGIDVLSGVMQAQARTLNRGFLSR
VERGRPWLRVKLGASLDGRTALASGESKWITSADARADVQRWRARAGAIL
TGAGTVMADDPSMTVRMGEDSPVVPPLRVVLDAGLRTLACRNIRQGDAPT
LYLHGEDVSAPSLDDAQFLAMPLHAGRFDLAAVLALLAERGINEVHVEGG
ATLSGALLQAGLVDELLVYMAPVLLGDSAKPLLAGLGIETMAQRAALQLL
DVRQLGQDLCLRYAPVVAG

    






    

        
            
                XFF4834R
            
                
        
XFF4834R_chr21440 lcl|tadA-XFF4834R_chr21440

        
9

	
156

	
S=126 I=35 E=9.61427e-09

	
tRNA-specific adenosine deaminase

     	

   





    

        
            
                X.species
            
                
        
NP_641099.1 lcl|ribD-XAC0746

        
1

	
369

	
S=1701 I=93 E=0

	
5-amino-6-uracil reductase

     	

   





    

        
            
                X.species
            
                
        
YP_362529.1 lcl|ribD-XCV0798

        
1

	
369

	
S=1626 I=88 E=0

	
riboflavin biosynthesis protein RibD (diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-[5-phosphoribosylamino]uracil reductase)

     	

   





    

        
            
                X.species
            
                
        
NP_636085.1 lcl|ribD-XCC0693

        
9

	
366

	
S=1592 I=86 E=0

	
riboflavin-specific deaminase/5-amino-6-uracil reductase

     	

   





    

        
            
                X.species
            
                
        
 lcl|ribD-XALc_2840

        
9

	
368

	
S=1357 I=77 E=2.65996e-157

	
probable riboflavin biosynthesis ribd oxidoreductase protein

     	

   





    

        
            
                X.species
            
                
        
NP_637525.1 lcl|XCC2169

        
12

	
158

	
S=133 I=35 E=5.19721e-09

	
hypothetical protein

     	

   





    

        
            
                X.species
            
                
        
NP_642364.1 lcl|XAC2038-XAC2038

        
6

	
158

	
S=132 I=36 E=7.17581e-09

	
hypothetical protein

     	

   





    

        
            
                X.species
            
                
        
YP_363930.1 lcl|XCV2199

        
6

	
158

	
S=130 I=33 E=1.35608e-08

	
putative cytidine / deoxycytidylate deaminase family protein

     	

   





    

        
            
                X.species
            
                
        
 lcl|XALc_1648

        
9

	
156

	
S=121 I=31 E=1.77544e-07

	
putative cytidine / deoxycytidylate deaminase protein

     	

   





    

        
                pubmed
        
        

        
11

	
362

	
S=867 I=49 E=2.77115e-96

	
Diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino)uracil reductase EC=1.1.1.193 EC=3.5.4.26 ; Hydrolase O

	
Pubmed 15522084,16950922

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
11

	
362

	
S=867 I=49 E=2.77115e-96

	
Riboflavin biosynthesis protein ribD EC=3.5.4.26 EC=1.1.1.193 ; Hydrolase Metal-binding Multifunctional enzyme NADP Oxidoreductase Zinc

	
Pubmed 1406588

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
12

	
359

	
S=768 I=47 E=2.60369e-84

	
Pyrimidine deaminase/pyrimidine reductase

	
Pubmed 12444973

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
9

	
359

	
S=764 I=41 E=7.94806e-84

	
Pyrimidine deaminase/ pyrimidine reductase

	
Pubmed 12444973

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
12

	
365

	
S=688 I=42 E=1.11804e-74

	
Riboflavin biosynthesis protein ribD EC=3.5.4.26 EC=1.1.1.193 ; Hydrolase Metal-binding Multifunctional enzyme NADP Oxidoreductase Zinc

	
Pubmed 9297088

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
12

	
366

	
S=654 I=39 E=1.64968e-70

	
Riboflavin biosynthesis protein ribD EC=3.5.4.26 EC=1.1.1.193 ; Hydrolase Metal-binding Multifunctional enzyme NADP Oxidoreductase Zinc

	
Pubmed 7934829

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
4

	
366

	
S=586 I=35 E=2.60125e-62

	
Riboflavin biosynthesis protein ribD EC=3.5.4.26 EC=1.1.1.193 ; Hydrolase Metal-binding Multifunctional enzyme NADP Oxidoreductase Zinc

	
Pubmed 8522537

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
11

	
362

	
S=561 I=35 E=3.1161e-59

	
Riboflavin-specific deaminase/reductase

	
Pubmed 15466513

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
11

	
321

	
S=433 I=39 E=1.01607e-43

	
Probable riboflavin biosynthesis protein (Deaminase/reductase) Riboflavin-specific deaminase/reductase

	
Pubmed 12036276

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
19

	
327

	
S=410 I=35 E=6.44074e-41

	
Riboflavin-specific deaminase / reductase

	
Pubmed 10488170

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
11

	
362

	
S=867 I=49 E=1.90664e-96

	
Riboflavin biosynthesis protein ribD EC=3.5.4.26 EC=1.1.1.193 ; Hydrolase Metal-binding Multifunctional enzyme NADP Oxidoreductase Zinc

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
9

	
365

	
S=783 I=45 E=2.70327e-86

	
Riboflavin biosynthesis protein ribD EC=3.5.4.26 EC=1.1.1.193 ; Hydrolase Metal-binding Multifunctional enzyme NADP Oxidoreductase Zinc

	

    

    

         
        
prodomImg

    





    

        Iprscan
        
	[G3DSA:3.40.140.10]
	
12

	
153

	
	
-

    





    

        Iprscan
        
	[G3DSA:3.40.430.10]
	
279

	
363

	
	
-

    





    

        Iprscan
        IPR002125
	[PF00383]
	
9

	
109

	
	
CMP/dCMP deaminase, zinc-binding

    





    

        Iprscan
        IPR002734
	[PF01872]
	
156

	
361

	
	
Bacterial bifunctional deaminase-reductase, C-terminal

    





    

        Iprscan
        IPR004794
	[TIGR00326]
	
16

	
362

	
	
Riboflavin biosynthesis protein RibD

    





    

        Iprscan
        IPR011549
	[TIGR00227]
	
154

	
365

	
	
Riboflavin-specific deaminase, C-terminal

    





    

        Iprscan
        IPR016192
	[PS00903]
	
59

	
97

	
	
APOBEC/CMP deaminase, zinc-binding

    





    

        Iprscan
        
	[seg]
	
64

	
77

	
	
-

    





    

        
            
                
            
                
        
PD404873

        
12

	
152

	
S=177 I=36 E=6.51821e-14

    	
    





    

        
            
                
            
                
        
PD707608

        
14

	
84

	
S=175 I=53 E=1.00798e-13

    	
    





    

        
            
                
            
                
        
PD859291

        
155

	
208

	
S=171 I=63 E=3.27063e-13

    	
    





    

        
            
                
            
                
        
PDA128E1

        
98

	
153

	
S=166 I=59 E=1.1886e-12

    	
    





    

        
            
                
            
                
        
PD005260

        
295

	
363

	
S=157 I=49 E=1.48978e-11

    	
    





    

        
            
                
            
                
        
PDA3X4T8

        
269

	
365

	
S=149 I=56 E=1.34067e-10

    	
    





    

        
            
                
            
                
        
PDA562F0

        
85

	
217

	
S=149 I=22 E=1.69651e-10

    	
    





    

        
            
                
            
                
        
PDA1E9D8

        
86

	
136

	
S=134 I=54 E=8.8073e-09

    	
    





    

        
            
                
            
                
        
PD897576

        
276

	
327

	
S=129 I=50 E=3.94568e-08

    	
    





    

        
            
                
            
                
        
PD974016

        
298

	
365

	
S=126 I=40 E=8.72356e-08

    	
    




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                pubmed
            
        
	    
            
Set of Uniprot with relevant PubMed cross-references ncbi-blastp

        		
 	    
            21 hits
        
    

    

        
            
                swiss-prot
            
        
	    
            
Swiss-Prot ncbi-blastp

        		
 	    
            25 hits
        
    

    
    
    

        
            
                XFF4834R
            
        
    	
            
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp

        		        
        
            1 hits
        
    

        
    

        
            
                hamap
            
        
	
            
HAMAP scan

        		        
        
            0 hits
        
    

    
    

	    
            
                Interpro Scan
            
            
	        
                
IprScan

            		        
            
                8 hits
            
    








Show or not Miscellaneous analyses




    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetLocalBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBWLHlR4/XFF4834R_chr07540.xml_fasta", "https://iant.toulouse.inra.fr/bacteria/annotation/web/img/XFF4834R.png"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    
    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetNcbiBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBWLHlR4/XFF4834R_chr07540.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetUniprotBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBWLHlR4/XFF4834R_chr07540.xml_fasta"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetKeggBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBWLHlR4/XFF4834R_chr07540.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    

    






ribC XFF4834R_chr07560




    

         
             
            XFF4834R_chr07550
            
XFF4834R_chr07550
            
        		


       
           
	   Cluster
	   
DrawMap
	   
        		
	
        
            XML file
        	


	    FASTA file
        		
	
	
             
            Extract
Sequence
            
        		
	
	
             
            Codon
Usage
            
        		
    
    
            
            Framed
            
     
  	



	
            OrthoMCL
            
    
  	
    
    
    

     


	
             
            XFF4834R_chr07570
            
XFF4834R_chr07570
            
        		

    





    

        ID
        ribC
    

    

        AC
        XFF4834R_chr07560
    

    

        LT
        XFF4834R_chr07560
    

    

        OR
        XFF4834R_chr from 872219 to 872821 on strand +
    

   

        DE
        probable riboflavin synthase, alpha subunit
  

   

        IP
        Lumazine-binding protein; Riboflavin synthase-like beta-barrel
  
  
  
  

        CL
        1.5.3.9 Riboflavin (Vitamin B2), FAD, FMN	GO:0009231	GO:0006747	GO:0009398 
    

  

        EC
        
    

    
    

        GO
        
            InterPro



            Curated

        		
    


  

        PM
        
    

  

        AN
        
    

  

        CC
        COG: [H] Coenzyme transport and metabolism; 
    

    

        CC
        MODEL: XFF4834R 
  
    
  

        CC
        STATUS: curated by pieretti (20100330)
  

  
  


    

        MW
        20909.5 Da
    


    

        SQ
        200 aa
    

    

         
        
........10........20........30........40........50
         |         |         |         |         |
MFTGIIEGVGQLAARQPQGGDVRFTFATGTLPFDSVQLGESIAVNGVCLT
VIAFDAASFQADASTETLSLTTLGALPEGALLNLERAMRPTDRLGGHLVS
GHVDGLGQVQSIHDDARAQRWRFAAPASVLRYVAKKGSICVDGVSLTVND
VDQDGFEVALIPHTVAHTAFAQTAVGAAVNLEIDLVARYVEHLLGTRGAA

    





Show or not Domain decomposition
 

    

        
            
                X.species
            
                
        
YP_362531.1 lcl|ribE-XCV0800

        
1

	
200

	
S=940 I=92 E=4.3446e-107

	
riboflavin synthase subunit alpha

     	

   





    

        
            
                X.species
            
                
        
NP_641101.1 lcl|ribE-XAC0748

        
1

	
200

	
S=940 I=92 E=4.3446e-107

	
riboflavin synthase subunit alpha

     	

   





    

        
            
                X.species
            
                
        
NP_636087.1 lcl|ribE-XCC0695

        
1

	
200

	
S=874 I=85 E=3.88696e-99

	
riboflavin synthase subunit alpha

     	

   





    

        
            
                X.species
            
                
        
 lcl|RibC-XALc_2839

        
1

	
194

	
S=775 I=83 E=3.71631e-87

	
putative riboflavin synthase, alpha subunit protein

     	

   





    

        
                pubmed
        
        

        
1

	
194

	
S=465 I=46 E=5.21912e-48

	
Riboflavin synthase

	
Pubmed 12444973

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
1

	
199

	
S=441 I=44 E=3.87051e-45

	
Riboflavin synthase

	
Pubmed 12444973

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
1

	
194

	
S=432 I=44 E=4.56404e-44

	
Riboflavin synthase alpha chain EC=2.5.1.9 ; Repeat biosynthesis Transferase

	
Pubmed 8144477

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
1

	
194

	
S=432 I=44 E=5.6756e-44

	
RibE

	
Pubmed 15034641

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
1

	
194

	
S=430 I=43 E=8.32949e-44

	
RibE

	
Pubmed 15034641,17369329

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
1

	
194

	
S=430 I=43 E=8.85368e-44

	
RibE

	
Pubmed 16156737

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
1

	
194

	
S=430 I=44 E=9.1679e-44

	
RibE

	
Pubmed 16156737

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
1

	
195

	
S=427 I=43 E=2.31015e-43

	
RibE

	
Pubmed 18359809

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
1

	
195

	
S=422 I=43 E=8.39541e-43

	
RibE

	
Pubmed 15034641,17369329

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
1

	
195

	
S=421 I=42 E=1.26476e-42

	
RibE Riboflavin synthetase

	
Pubmed 11396941,15034641

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
1

	
194

	
S=432 I=44 E=3.16285e-44

	
Riboflavin synthase alpha chain EC=2.5.1.9 ; Repeat biosynthesis Transferase

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
1

	
199

	
S=420 I=43 E=8.99696e-43

	
Riboflavin synthase alpha chain EC=2.5.1.9 ; Repeat biosynthesis Transferase

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
1

	
194

	
S=409 I=42 E=2.45009e-41

	
Riboflavin synthase alpha chain EC=2.5.1.9 ; Repeat biosynthesis Transferase

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
1

	
194

	
S=380 I=39 E=7.72524e-38

	
Riboflavin synthase alpha chain EC=2.5.1.9 ; Repeat biosynthesis Transferase

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
1

	
194

	
S=364 I=39 E=6.31098e-36

	
Riboflavin synthase alpha chain EC=2.5.1.9 ; Repeat biosynthesis Transferase

	

    

    

         
        
prodomImg

    





    

        Iprscan
        
	[G3DSA:2.40.30.20]
	
1

	
97

	
	
-

    





    

        Iprscan
        
	[G3DSA:2.40.30.20]
	
102

	
195

	
	
-

    





    

        Iprscan
        IPR001783
	[PIRSF000498]
	
1

	
197

	
	
Lumazine-binding protein

    





    

        Iprscan
        IPR001783
	[PTHR21098]
	
1

	
194

	
	
Lumazine-binding protein

    





    

        Iprscan
        IPR001783
	[PF00677]
	
3

	
87

	
	
Lumazine-binding protein

    





    

        Iprscan
        IPR001783
	[PF00677]
	
100

	
184

	
	
Lumazine-binding protein

    





    

        Iprscan
        IPR001783
	[TIGR00187]
	
1

	
200

	
	
Lumazine-binding protein

    





    

        Iprscan
        
	[seg]
	
53

	
64

	
	
-

    





    

        
            
                
            
                
        
PD004110

        
96

	
194

	
S=260 I=47 E=5.77256e-24

    	
    





    

        Iprscan
        IPR017938
	[SSF63380]
	
94

	
195

	
	
Riboflavin synthase-like beta-barrel

    





    

        Iprscan
        IPR017938
	[SSF63380]
	
1

	
93

	
	
Riboflavin synthase-like beta-barrel

    




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Show or not Access unfiltered results






    

       
            
                pubmed
            
        
	    
            
Set of Uniprot with relevant PubMed cross-references ncbi-blastp

        		
 	    
            50 hits
        
    

    

        
            
                swiss-prot
            
        
	    
            
Swiss-Prot ncbi-blastp

        		
 	    
            23 hits
        
    

    
    
    

        
            
                XFF4834R
            
        
    	
            
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp

        		        
        
            0 hits
        
    

        
    

        
            
                hamap
            
        
	
            
HAMAP scan

        		        
        
            0 hits
        
    

    
    

	    
            
                Interpro Scan
            
            
	        
                
IprScan

            		        
            
                10 hits
            
    








Show or not Miscellaneous analyses




    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetLocalBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBWLHlR4/XFF4834R_chr07560.xml_fasta", "https://iant.toulouse.inra.fr/bacteria/annotation/web/img/XFF4834R.png"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    
    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetNcbiBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBWLHlR4/XFF4834R_chr07560.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetUniprotBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBWLHlR4/XFF4834R_chr07560.xml_fasta"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetKeggBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBWLHlR4/XFF4834R_chr07560.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    

    






ribB XFF4834R_chr07570




    

         
             
            XFF4834R_chr07560
            
XFF4834R_chr07560
            
        		


       
           
	   Cluster
	   
DrawMap
	   
        		
	
        
            XML file
        	


	    FASTA file
        		
	
	
             
            Extract
Sequence
            
        		
	
	
             
            Codon
Usage
            
        		
    
    
            
            Framed
            
     
  	



	
            OrthoMCL
            
    
  	
    
    
    

     


	
             
            XFF4834R_chr07580
            
XFF4834R_chr07580
            
        		

    





    

        ID
        ribB
    

    

        AC
        XFF4834R_chr07570
    

    

        LT
        XFF4834R_chr07570
    

    

        OR
        XFF4834R_chr from 872818 to 873957 on strand +
    

   

        DE
        probable 3,4-dihydroxy-2-butanone-4-phosphate synthase
  

   

        IP
        DHBP synthase RibB
  
  
  
  

        CL
        1.5.3.9 Riboflavin (Vitamin B2), FAD, FMN	GO:0009231	GO:0006747	GO:0009398 
    

  

        EC
        
    

    
    

        GO
        
            InterPro
4-dihydroxy-2-butanone-4-phosphate synthase activity (GO:0008686)
Biological Process: riboflavin biosynthetic process (GO:0009231)
Molecular Function: GTP cyclohydrolase II activity (GO:0003935)


            Curated

        		
    


  

        PM
        
    

  

        AN
        
    

  

        CC
        COG: [H] Coenzyme transport and metabolism; 
    

    

        CC
        MODEL: XFF4834R 
  
    
  

        CC
        STATUS: curated by pieretti (20100330)
  

  
  


    

        MW
        41131.5 Da
    


    

        SQ
        379 aa
    

    

         
        
........10........20........30........40........50
         |         |         |         |         |
MNFAPVPELIEELRAGRMVVIVDDEDRENEGDLIMAAELVKPSDINFMVT
HARGLVCLSLTRERCAQLGLAPMVRNNTAQFQTNFTVSIEAAEGVTTGIS
AYDRAHTVRTAVRPDARPQDLSQPGHIFPLISQPGGVLTRAGHTEAASDL
PMLAGLEPAGVLVEVLNPDGSMARRPQLEVFAREHGLKMGSIADLIAYRL
ANEHTVERVDEREITTEFGPFKLVTYRDRIAHDLHFALLRGRADPQTPTL
VRVQVENPLADLLHWQRDDFGVAATDALRAIAAEGQGVMVVLSAPRDSES
LLARLRQQPEAAANAKDVSQWRRNGAGAQILADLGLGKLRVLGTPRRQVG
LAGFGLEVVEYLECHAGEGARAVPPSAVP

    





Show or not Domain decomposition
 

    

        
            
                X.species
            
                
        
NP_641102.1 lcl|ribA-XAC0749

        
1

	
379

	
S=1965 I=99 E=0

	
3,4-dihydroxy-2-butanone 4-phosphate synthase

     	

   





    

        
            
                X.species
            
                
        
YP_362532.1 lcl|ribB-XCV0801

        
1

	
379

	
S=1954 I=99 E=0

	
riboflavin biosynthesis protein RibB (GTP cyclohydrolase II/3,4-dihydroxy-2-butanone 4-phosphate synthase)

     	

   





    

        
            
                X.species
            
                
        
NP_636088.1 lcl|ribA-XCC0696

        
1

	
371

	
S=1849 I=95 E=0

	
GTP cyclohydrolase II/3,4-dihydroxy-2-butanone 4- phosphate synthase

     	

   





    

        
            
                X.species
            
                
        
 lcl|RibB-XALc_2838

        
1

	
356

	
S=1634 I=88 E=0

	
putative gtp cyclohydrolase II /3,4-dihydroxy-2-butanone 4-phosphate synthase, riboflavin biosynthesis protein

     	

   





    

        
                pubmed
        
        

        
1

	
365

	
S=986 I=52 E=1.09509e-110

	
RibB ; Metal-binding Riboflavin biosynthesis

	
Pubmed 18359809

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
1

	
362

	
S=985 I=55 E=1.33826e-110

	
GTP cyclohydrolase II/ 3,4-dihydroxy-2-butanone 4-phosphate synthase ; Metal-binding Riboflavin biosynthesis

	
Pubmed 12444973

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
1

	
362

	
S=974 I=50 E=2.46168e-109

	
RibB ; Metal-binding Riboflavin biosynthesis

	
Pubmed 15034641,17369329

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
1

	
365

	
S=970 I=51 E=8.86847e-109

	
DHBP synthetase ; Metal-binding Riboflavin biosynthesis

	
Pubmed 11396941

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
1

	
365

	
S=969 I=51 E=1.29023e-108

	
RibB ; Metal-binding Riboflavin biosynthesis

	
Pubmed 15034641,17369329

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
1

	
365

	
S=967 I=51 E=2.13937e-108

	
RibB ; Metal-binding Riboflavin biosynthesis

	
Pubmed 15034641,17369329

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
1

	
362

	
S=967 I=52 E=2.177e-108

	
RibB ; Metal-binding Riboflavin biosynthesis

	
Pubmed 17586644

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
1

	
362

	
S=963 I=52 E=6.36208e-108

	
RibB ; Metal-binding Riboflavin biosynthesis

	
Pubmed 17586644

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
1

	
362

	
S=962 I=52 E=8.40944e-108

	
3,4-dihydroxy-2-butanone 4-phosphate synthase EC=4.1.99.12 ; Lyase Magnesium Manganese Metal-binding Riboflavin biosynthesis

	
Pubmed 1339274

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
1

	
362

	
S=960 I=52 E=1.53474e-107

	
RibB ; Metal-binding Riboflavin biosynthesis

	
Pubmed 17586644

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
1

	
362

	
S=962 I=52 E=5.79056e-108

	
3,4-dihydroxy-2-butanone 4-phosphate synthase EC=4.1.99.12 ; Lyase Magnesium Manganese Metal-binding Riboflavin biosynthesis

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
1

	
362

	
S=957 I=55 E=2.05005e-107

	
3,4-dihydroxy-2-butanone 4-phosphate synthase EC=4.1.99.12 ; Lyase Magnesium Manganese Metal-binding Riboflavin biosynthesis

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
1

	
362

	
S=926 I=50 E=1.14922e-103

	
3,4-dihydroxy-2-butanone 4-phosphate synthase EC=4.1.99.12 ; Lyase Magnesium Manganese Metal-binding Riboflavin biosynthesis

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
1

	
362

	
S=922 I=53 E=3.99829e-103

	
3,4-dihydroxy-2-butanone 4-phosphate synthase EC=4.1.99.12 ; Lyase Magnesium Manganese Metal-binding Riboflavin biosynthesis

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
2

	
364

	
S=850 I=49 E=2.29118e-94

	
3,4-dihydroxy-2-butanone 4-phosphate synthase EC=4.1.99.12 ; Lyase Magnesium Manganese Metal-binding Riboflavin biosynthesis

	

    

    

         
        
prodomImg

    





    

        Iprscan
        IPR017945
	[G3DSA:3.90.870.10]
	
3

	
212

	
	
DHBP synthase RibB-like alpha/beta domain

    





    

        Iprscan
        IPR016299
	[PIRSF001259]
	
1

	
378

	
	
Riboflavin biosynthesis protein RibA

    





    

        Iprscan
        
	[PTHR21327:SF1]
	
33

	
354

	
	
-

    





    

        Iprscan
        
	[PTHR21327]
	
33

	
354

	
	
-

    





    

        Iprscan
        IPR000422
	[PF00926]
	
7

	
199

	
	
DHBP synthase RibB

    





    

        Iprscan
        IPR000926
	[PF00925]
	
206

	
362

	
	
GTP cyclohydrolase II

    





    

        Iprscan
        IPR000422
	[TIGR00506]
	
2

	
199

	
	
DHBP synthase RibB

    





    

        
            
                
            
                
        
PD003034

        
6

	
199

	
S=646 I=65 E=9.51406e-71

    	
    





    

        
            
                
            
                
        
PD003336

        
219

	
292

	
S=124 I=41 E=1.61887e-07

    	
    





    

        Iprscan
        IPR017945
	[SSF55821]
	
1

	
203

	
	
DHBP synthase RibB-like alpha/beta domain

    




Show or not Suggestions
Suggest an annotation


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ID


DE


EC


GO


PM



CC


CL

 
  Your email  
 
  Validation code (copy this one uj2XCizw)  
 
     



Show or not Access unfiltered results






    

       
            
                pubmed
            
        
	    
            
Set of Uniprot with relevant PubMed cross-references ncbi-blastp

        		
 	    
            55 hits
        
    

    

        
            
                swiss-prot
            
        
	    
            
Swiss-Prot ncbi-blastp

        		
 	    
            264 hits
        
    

    
    
    

        
            
                XFF4834R
            
        
    	
            
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp

        		        
        
            0 hits
        
    

        
    

        
            
                hamap
            
        
	
            
HAMAP scan

        		        
        
            0 hits
        
    

    
    

	    
            
                Interpro Scan
            
            
	        
                
IprScan

            		        
            
                8 hits
            
    








Show or not Miscellaneous analyses




    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetLocalBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBWLHlR4/XFF4834R_chr07570.xml_fasta", "https://iant.toulouse.inra.fr/bacteria/annotation/web/img/XFF4834R.png"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    
    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetNcbiBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBWLHlR4/XFF4834R_chr07570.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetUniprotBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBWLHlR4/XFF4834R_chr07570.xml_fasta"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetKeggBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBWLHlR4/XFF4834R_chr07570.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    

    






ribE XFF4834R_chr07580




    

         
             
            XFF4834R_chr07570
            
XFF4834R_chr07570
            
        		


       
           
	   Cluster
	   
DrawMap
	   
        		
	
        
            XML file
        	


	    FASTA file
        		
	
	
             
            Extract
Sequence
            
        		
	
	
             
            Codon
Usage
            
        		
    
    
            
            Framed
            
     
  	



	
            OrthoMCL
            
    
  	
    
    
    

     


	
             
            XFF4834R_chr07590
            
XFF4834R_chr07590
            
        		

    





    

        ID
        ribE
    

    

        AC
        XFF4834R_chr07580
    

    

        LT
        XFF4834R_chr07580
    

    

        OR
        XFF4834R_chr from 874290 to 874754 on strand +
    

   

        DE
        probable riboflavin synthase beta chain
  

   

        IP
        6,7-dimethyl-8-ribityllumazine synthase
  
  
  
  

        CL
        1.5.3.9 Riboflavin (Vitamin B2), FAD, FMN	GO:0009231	GO:0006747	GO:0009398 
    

  

        EC
        
    

    
    

        GO
        
            InterPro
Biological Process: riboflavin biosynthetic process (GO:0009231)
Cellular Component: riboflavin synthase complex (GO:0009349)


            Curated

        		
    


  

        PM
        
    

  

        AN
        
    

  

        CC
        COG: [H] Coenzyme transport and metabolism; 
    

    

        CC
        MODEL: XFF4834R 
  
    
  

        CC
        STATUS: curated by pieretti (20100330)
  

  
  


    

        MW
        16241.3 Da
    


    

        SQ
        154 aa
    

    

         
        
........10........20........30........40........50
         |         |         |         |         |
MTHYEGDLRPTTARFAIIASRWNARITDVLVAGARQSLAGNGIGEDAIDV
IRVPGAWEIPIAANRVAQSGQHGAIIALGCVIRGDTRHYEHVADLCAEGL
MSVQLQTGVPVLNGVLAVERVEDAEARAGGSHGNKGEECALAALELVNLM
ELLP

    





Show or not Domain decomposition
 

    

        
            
                X.species
            
                
        
YP_362533.1 lcl|ribH-XCV0802

        
1

	
154

	
S=724 I=92 E=3.57309e-81

	
riboflavin synthase subunit beta

     	

   





    

        
            
                X.species
            
                
        
NP_641103.1 lcl|ribH-XAC0750

        
1

	
154

	
S=724 I=92 E=3.57309e-81

	
riboflavin synthase subunit beta

     	

   





    

        
            
                X.species
            
                
        
NP_636089.1 lcl|ribH-XCC0697

        
1

	
154

	
S=698 I=88 E=6.39223e-78

	
riboflavin synthase subunit beta

     	

   





    

        
            
                X.species
            
                
        
 lcl|RibH-XALc_2837

        
1

	
154

	
S=550 I=73 E=4.60055e-60

	
putative 6,7-dimethyl-8-ribityllumazine synthase, riboflavin synthase beta subunit protein

     	

   





    

        
                pubmed
        
        

        
1

	
151

	
S=325 I=44 E=2.62231e-31

	
6,7-dimethyl-8-ribityllumazine synthase EC=2.5.1.9 ; Riboflavin biosynthesis Transferase

	
Pubmed 8522537

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
3

	
151

	
S=323 I=44 E=4.74424e-31

	
6,7-dimethyl-8-ribityllumazine synthase EC=2.5.1.9 ; Riboflavin biosynthesis Transferase

	
Pubmed 14729744

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
3

	
151

	
S=323 I=44 E=4.74424e-31

	
6,7-dimethyl-8-ribityllumazine synthase EC=2.5.1.9 ; Riboflavin biosynthesis Transferase

	
Pubmed 15590099

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
3

	
151

	
S=323 I=44 E=4.74424e-31

	
6,7-dimethyl-8-ribityllumazine synthase EC=2.5.1.9 ; Riboflavin biosynthesis Transferase

	
Pubmed 14729744

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
3

	
151

	
S=323 I=44 E=4.74424e-31

	
6,7-dimethyl-8-ribityllumazine synthase EC=2.5.1.9 ; Riboflavin biosynthesis Transferase

	
Pubmed 14729744

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
1

	
150

	
S=305 I=41 E=7.85342e-29

	
6,7-dimethyl-8-ribityllumazine synthase EC=2.5.1.9 ; Riboflavin biosynthesis Transferase

	
Pubmed 15466513

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
1

	
153

	
S=301 I=42 E=2.48243e-28

	
6,7-dimethyl-8-ribityllumazine synthase EC=2.5.1.9 ; Riboflavin biosynthesis Transferase

	
Pubmed 19014707

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
1

	
150

	
S=300 I=42 E=2.95534e-28

	
6,7-dimethyl-8-ribityllumazine synthase EC=2.5.1.9 ; Riboflavin biosynthesis Transferase

	
Pubmed 12444973

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
1

	
154

	
S=300 I=44 E=3.4275e-28

	
6,7-dimethyl-8-ribityllumazine synthase EC=2.5.1.9 ; Riboflavin biosynthesis Transferase

	
Pubmed 17586644

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
1

	
154

	
S=300 I=44 E=3.4275e-28

	
6,7-dimethyl-8-ribityllumazine synthase EC=2.5.1.9 ; Riboflavin biosynthesis Transferase

	
Pubmed 17586644

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
1

	
154

	
S=724 I=92 E=7.98407e-80

	
6,7-dimethyl-8-ribityllumazine synthase EC=2.5.1.9 ; Riboflavin biosynthesis Transferase

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
1

	
154

	
S=724 I=92 E=7.98407e-80

	
6,7-dimethyl-8-ribityllumazine synthase EC=2.5.1.9 ; Riboflavin biosynthesis Transferase

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
1

	
154

	
S=716 I=91 E=9.09199e-79

	
6,7-dimethyl-8-ribityllumazine synthase EC=2.5.1.9 ; Riboflavin biosynthesis Transferase

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
1

	
154

	
S=716 I=91 E=9.09199e-79

	
6,7-dimethyl-8-ribityllumazine synthase EC=2.5.1.9 ; Riboflavin biosynthesis Transferase

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
1

	
154

	
S=698 I=88 E=1.42834e-76

	
6,7-dimethyl-8-ribityllumazine synthase EC=2.5.1.9 ; Riboflavin biosynthesis Transferase

	

    

    

         
        
prodomImg

    





    

        Iprscan
        IPR002180
	[G3DSA:3.40.50.960]
	
2

	
153

	
	
6,7-dimethyl-8-ribityllumazine synthase

    





    

        Iprscan
        IPR002180
	[PTHR21058]
	
2

	
154

	
	
6,7-dimethyl-8-ribityllumazine synthase

    





    

        Iprscan
        IPR002180
	[PF00885]
	
11

	
151

	
	
6,7-dimethyl-8-ribityllumazine synthase

    





    

        Iprscan
        IPR002180
	[TIGR00114]
	
13

	
150

	
	
6,7-dimethyl-8-ribityllumazine synthase

    





    

        Iprscan
        
	[seg]
	
117

	
128

	
	
-

    





    

        
            
                
            
                
        
PD003664

        
14

	
136

	
S=300 I=48 E=6.86924e-29

    	
    





    

        Iprscan
        IPR002180
	[SSF52121]
	
1

	
154

	
	
6,7-dimethyl-8-ribityllumazine synthase

    




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Suggest an annotation


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Show or not Access unfiltered results






    

       
            
                pubmed
            
        
	    
            
Set of Uniprot with relevant PubMed cross-references ncbi-blastp

        		
 	    
            64 hits
        
    

    

        
            
                swiss-prot
            
        
	    
            
Swiss-Prot ncbi-blastp

        		
 	    
            535 hits
        
    

    
    
    

        
            
                XFF4834R
            
        
    	
            
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp

        		        
        
            0 hits
        
    

        
    

        
            
                hamap
            
        
	
            
HAMAP scan

        		        
        
            0 hits
        
    

    
    

	    
            
                Interpro Scan
            
            
	        
                
IprScan

            		        
            
                6 hits
            
    








Show or not Miscellaneous analyses




    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetLocalBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBWLHlR4/XFF4834R_chr07580.xml_fasta", "https://iant.toulouse.inra.fr/bacteria/annotation/web/img/XFF4834R.png"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    
    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetNcbiBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBWLHlR4/XFF4834R_chr07580.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetUniprotBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBWLHlR4/XFF4834R_chr07580.xml_fasta"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetKeggBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBWLHlR4/XFF4834R_chr07580.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    

    






XFF4834R_chr09100491_0989678_r2_XFF4834R-XFF4834R_chr08520 XFF4834R_chr08520




    

         
             
            XFF4834R_chr08510
            
XFF4834R_chr08510
            
        		


       
           
	   Cluster
	   
DrawMap
	   
        		
	
        
            XML file
        	


	    FASTA file
        		
	
	
             
            Extract
Sequence
            
        		
	
	
             
            Codon
Usage
            
        		
    
    
            
            Framed
            
     
  	



	
            OrthoMCL
            
    
  	
    
    
    

     


	
             
            XFF4834R_chr08530
            
XFF4834R_chr08530
            
        		

    





    

        ID
        XFF4834R_chr09100491_0989678_r2_XFF4834R-XFF4834R_chr08520
    

    

        AC
        XFF4834R_chr08520
    

    

        LT
        XFF4834R_chr08520
    

    

        OR
        XFF4834R_chr from 988491 to 989678 on strand -
    

   

        DE
        Putative FMNH2-dependent monooxygenase
  

   

        IP
        Acyl-CoA dehydrogenase/oxidase; Acyl-CoA dehydrogenase, type 2, C-terminal; Acyl-CoA oxidase/dehydrogenase, type1/2, C-terminal
  
  
  
  

        CL
        1.5.3.9 Riboflavin (Vitamin B2), FAD, FMN	GO:0009231	GO:0006747	GO:0009398 
    

  

        EC
        
    

    
    

        GO
        
            InterPro
Biological Process: oxidation reduction (GO:0055114)
Biological Process: metabolic process (GO:0008152)
Molecular Function: oxidoreductase activity (GO:0016491)
Molecular Function: acyl-CoA dehydrogenase activity (GO:0003995)
Molecular Function: FAD binding (GO:0050660)
acting on the CH-CH group of donors (GO:0016627)


            Curated

        		
    


  

        PM
        
    

  

        AN
        le gene s appelle msuC chez xac, sfnC chez P.putida, msuC chez P.aeruginosa aucun n existe chez coli... 
    

  

        CC
        COG: [I] Lipid transport and metabolism; 
    

    

        CC
        MODEL: XFF4834R 
  
    
  

        CC
        STATUS: curated by brin (20100723)
  

  
  


    

        MW
        43706.1 Da
    


    

        SQ
        395 aa
    

    

         
        
........10........20........30........40........50
         |         |         |         |         |
MTSRQPQPTLLNPLQTAQRLAAGFADTAIERDARGGTPKAERDALRASGL
LALSIPVQYGGLGASWSEVLQVVRTFAKVDSSIAHVFGFHHLMLATVRLF
GQPAQWQPWLEQTARKQWFWGNALNPLDTRTVAVQCEGWREFSGRKSFCS
GAIDSQMLIASALDERSGNLLIGAIPTARSGITLGHDWDNIGQRQTDSGS
TTFERVRVEESELLLDPGPLSTPFACLRPLIAQLLFAHLFLGIAEGAFEE
ARSYTLGEARAWHRSGVEQASEDPYILAHYGEFWLGLESARLLTERAAGL
LDAAWRKEHALGRDERAQVALAVAAAKVATTRVGLEVCSKLFEVTGARAT
HAALRLDRYWRNLRTQTLHDPVDYKLRELGEWALRHQPPTPSFYS

    






    

        
            
                XFF4834R
            
                
        
XFF4834R_chr08590 lcl|XFF4834R_chr09180369_0998661_f1_XFF4834R-XFF4834R_chr08590

        
45

	
395

	
S=256 I=27 E=2.18438e-24

	

     	

   





    

        
            
                X.species
            
                
        
NP_641198.1 lcl|msuC-XAC0846

        
1

	
395

	
S=1902 I=93 E=0

	
FMNH2-dependent monooxygenase

     	

   





    

        
            
                X.species
            
                
        
NP_641206.1 lcl|XAC0854-XAC0854

        
45

	
395

	
S=253 I=27 E=2.01203e-23

	
hypothetical protein

     	

   





    

        
                pubmed
        
        

        
14

	
395

	
S=1387 I=69 E=2.8218e-159

	
Putative FMNH2-dependent monooxygenase

	
Pubmed 12835925,12686641

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
5

	
376

	
S=1342 I=69 E=8.9602e-154

	
Putative FMNH2-dependent monooxygenase

	
Pubmed 10049377

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
14

	
395

	
S=733 I=42 E=4.90588e-80

	
Thermophilic dibenzothiophene desulfurization enzyme C

	
Pubmed 10733908

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
12

	
395

	
S=689 I=40 E=1.06146e-74

	
Dibenzothiophene desulfurization enzyme C ; FAD Flavoprotein Oxidoreductase

	
Pubmed 15221222

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
12

	
395

	
S=688 I=40 E=1.47839e-74

	
Dibenzothiophene desulfurization enzyme C ; FAD Flavoprotein Oxidoreductase

	
Pubmed 16820450

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
12

	
395

	
S=688 I=40 E=1.00539e-74

	
Dibenzothiophene desulfurization enzyme C ; Oxidoreductase Plasmid

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
14

	
371

	
S=150 I=24 E=1.60676e-09

	
Putative acyl-CoA dehydrogenase ydbM EC=1.3.99.- ; FAD Flavoprotein Oxidoreductase

	

    

    

         
        
prodomImg

    





    

        Iprscan
        IPR013786
	[G3DSA:1.10.540.10]
	
7

	
119

	
	
Acyl-CoA dehydrogenase/oxidase, N-terminal

    





    

        Iprscan
        IPR006091
	[G3DSA:2.40.110.10]
	
125

	
219

	
	
Acyl-CoA oxidase/dehydrogenase, central domain

    





    

        Iprscan
        IPR013764
	[G3DSA:1.20.140.10]
	
231

	
370

	
	
Acyl-CoA oxidase/dehydrogenase, type1/2, C-terminal

    





    

        Iprscan
        
	[PTHR10909:SF8]
	
76

	
370

	
	
-

    





    

        Iprscan
        
	[PTHR10909]
	
76

	
370

	
	
-

    





    

        Iprscan
        IPR013107
	[PF08028]
	
235

	
369

	
	
Acyl-CoA dehydrogenase, type 2, C-terminal

    





    

        Iprscan
        IPR006092
	[PF02771]
	
21

	
115

	
	
Acyl-CoA dehydrogenase, N-terminal

    





    

        Iprscan
        
	[seg]
	
204

	
215

	
	
-

    





    

        Iprscan
        
	[seg]
	
317

	
329

	
	
-

    





    

        
            
                
            
                
        
PD734257

        
90

	
203

	
S=254 I=47 E=2.84797e-23

    	
    





    

        
            
                
            
                
        
PD394280

        
338

	
389

	
S=153 I=60 E=4.63461e-11

    	
    





    

        
            
                
            
                
        
PDA1L9H3

        
283

	
316

	
S=128 I=76 E=4.16378e-08

    	
    





    

        
            
                
            
                
        
PD708457

        
231

	
283

	
S=127 I=51 E=5.50371e-08

    	
    





    

        Iprscan
        IPR009100
	[SSF56645]
	
2

	
217

	
	
Acyl-CoA dehydrogenase/oxidase

    





    

        Iprscan
        IPR009075
	[SSF47203]
	
231

	
388

	
	
Acyl-CoA dehydrogenase/oxidase C-terminal

    




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                pubmed
            
        
	    
            
Set of Uniprot with relevant PubMed cross-references ncbi-blastp

        		
 	    
            17 hits
        
    

    

        
            
                swiss-prot
            
        
	    
            
Swiss-Prot ncbi-blastp

        		
 	    
            2 hits
        
    

    
    
    

        
            
                XFF4834R
            
        
    	
            
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp

        		        
        
            1 hits
        
    

        
    

        
            
                hamap
            
        
	
            
HAMAP scan

        		        
        
            0 hits
        
    

    
    

	    
            
                Interpro Scan
            
            
	        
                
IprScan

            		        
            
                11 hits
            
    








Show or not Miscellaneous analyses




    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetLocalBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBWLHlR4/XFF4834R_chr08520.xml_fasta", "https://iant.toulouse.inra.fr/bacteria/annotation/web/img/XFF4834R.png"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    
    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetNcbiBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBWLHlR4/XFF4834R_chr08520.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetUniprotBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBWLHlR4/XFF4834R_chr08520.xml_fasta"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetKeggBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBWLHlR4/XFF4834R_chr08520.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    

    






ribF XFF4834R_chr32860




    

         
             
            XFF4834R_chr32850
            
XFF4834R_chr32850
            
        		


       
           
	   Cluster
	   
DrawMap
	   
        		
	
        
            XML file
        	


	    FASTA file
        		
	
	
             
            Extract
Sequence
            
        		
	
	
             
            Codon
Usage
            
        		
    
    
            
            Framed
            
     
  	



	
            OrthoMCL
            
    
  	
    
    
    

     


	
             
            XFF4834R_chr32870
            
XFF4834R_chr32870
            
        		

    





    

        ID
        ribF
    

    

        AC
        XFF4834R_chr32860
    

    

        LT
        XFF4834R_chr32860
    

    

        OR
        XFF4834R_chr from 3785297 to 3786319 on strand -
    

   

        DE
        probable riboflavin biosynthesis protein RibF
  

   

        IP
        Riboflavin kinase/FAD synthetase; Rossmann-like alpha/beta/alpha sandwich fold; FAD synthetase; Riboflavin kinase
  
  
  
  

        CL
        1.5.3.9 Riboflavin (Vitamin B2), FAD, FMN	GO:0009231	GO:0006747	GO:0009398 
    

  

        EC
        
    

    
    

        GO
        
            InterPro
Biological Process: riboflavin biosynthetic process (GO:0009231)
Molecular Function: FMN adenylyltransferase activity (GO:0003919)
Molecular Function: riboflavin kinase activity (GO:0008531)


            Curated

        		
    


  

        PM
        
    

  

        AN
        
    

  

        CC
        COG: [H] Coenzyme transport and metabolism; 
    

    

        CC
        MODEL: XFF4834R 
  
    
  

        CC
        STATUS: curated by pieretti (20100409)
  

  
  


    

        MW
        37126.2 Da
    


    

        SQ
        340 aa
    

    

         
        
........10........20........30........40........50
         |         |         |         |         |
MSRLFRDVEGGTLFPRGSVVCIGAFDGLHLGHRTLVQHAVARARALGVPA
VAVSFEPLPREFFAPAALPPRLTLARAKIEGLYGFGADSVGMIRFDGRLS
KMCAEDFVRLALVGRLCAREVWIGPEFRFGHRRAGDIGLLRTLGEQHGFV
AGEIAPVHLHGERISATRIRELLGAGEFAHAGDLLGRPYAIGGRVVRGKQ
LGRTLGYPTANLRFPRTPALSGIYATWVHGVAERPWPSVSSFGTRPTVAG
VEPLLEAHLFDFQCDLYGRHIAVEFVAKLRDEEKFDGLEALTVQMHRDAE
QAREVLAAHMRSEQQPSTTASPSQEPARPCADFSSNPAQR

    





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CL

 
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Show or not Access unfiltered results






    

       
            
                pubmed
            
        
	    
            
Set of Uniprot with relevant PubMed cross-references ncbi-blastp

        		
 	    
            48 hits
        
    

    

        
            
                swiss-prot
            
        
	    
            
Swiss-Prot ncbi-blastp

        		
 	    
            18 hits
        
    

    
    
    

        
            
                XFF4834R
            
        
    	
            
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp

        		        
        
            0 hits
        
    

        
    

        
            
                hamap
            
        
	
            
HAMAP scan

        		        
        
            0 hits
        
    

    
    

	    
            
                Interpro Scan
            
            
	        
                
IprScan

            		        
            
                8 hits
            
    








Show or not Miscellaneous analyses




    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetLocalBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBWLHlR4/XFF4834R_chr32860.xml_fasta", "https://iant.toulouse.inra.fr/bacteria/annotation/web/img/XFF4834R.png"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    
    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetNcbiBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBWLHlR4/XFF4834R_chr32860.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetUniprotBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBWLHlR4/XFF4834R_chr32860.xml_fasta"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetKeggBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBWLHlR4/XFF4834R_chr32860.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    

    






ribA XFF4834R_chr36840




    

         
             
            XFF4834R_chr36830
            
XFF4834R_chr36830
            
        		


       
           
	   Cluster
	   
DrawMap
	   
        		
	
        
            XML file
        	


	    FASTA file
        		
	
	
             
            Extract
Sequence
            
        		
	
	
             
            Codon
Usage
            
        		
    
    
            
            Framed
            
     
  	



	
            OrthoMCL
            
    
  	
    
    
    

     


	
             
            XFF4834R_chr36850
            
XFF4834R_chr36850
            
        		

    





    

        ID
        ribA
    

    

        AC
        XFF4834R_chr36840
    

    

        LT
        XFF4834R_chr36840
    

    

        OR
        XFF4834R_chr from 4261076 to 4262209 on strand +
    

   

        DE
        probable GTP cyclohydrolase-2
  

   

        IP
        Riboflavin biosynthesis protein RibA
  
  
  
  

        CL
        1.5.3.9 Riboflavin (Vitamin B2), FAD, FMN	GO:0009231	GO:0006747	GO:0009398 
    

  

        EC
        
    

    
    

        GO
        
            InterPro
Biological Process: riboflavin biosynthetic process (GO:0009231)
Molecular Function: GTP cyclohydrolase II activity (GO:0003935)


            Curated

        		
    


  

        PM
        
    

  

        AN
        
    

  

        CC
        COG: [H] Coenzyme transport and metabolism; 
    

    

        CC
        MODEL: XFF4834R 
  
    
  

        CC
        STATUS: curated by pieretti (20100409)
  

  
  


    

        MW
        39467.5 Da
    


    

        SQ
        377 aa
    

    

         
        
........10........20........30........40........50
         |         |         |         |         |
MSSPLPSPSTQAFGDPAAIRCERAASELRAGRPVLLTAANGQARAVLALD
SSTAQSYAAFARAARGRHYLFVTPTRAQVLGLSAPQGARVGLIDHSYDQL
AALAYLRDTPVPAQWTAGDALDAGGVEIARLGLLLPALLAVELRDVHDHA
AFAGCQSLALDDLSRGCATSAAAGYELVTRTPVPLRGLGMSEFVVFRGGV
AQRDQVAIVVGQPDLSTAVAVRVHSSCLTGDLFGSLKCDCGDQLRHGLAK
LKELGGGVLLYLDQEGRGTGIAAKMRAYGYQHAGLDTIDADAQLGFGPDE
RRYGSAVAMLRGLGIGRIRLLTNNPAKAERLRAAGIVVEDRIAITGDITA
ENEQYLRTKAARAGHALDVDALILAAQ

    






    

        Hamap
        RIBA_MF_00179
	raw_score=5109 norm_score=38.273
	
GTP cyclohydrolase-2 [ribA].

    





    

        
            
                X.species
            
                
        
NP_644098.1 lcl|ribA-XAC3792

        
1

	
377

	
S=1689 I=89 E=0

	
GTP cyclohydrolase

     	

   





    

        
            
                X.species
            
                
        
YP_365647.1 lcl|XCV3916

        
1

	
377

	
S=1672 I=88 E=0

	
GTP cyclohydrolase

     	

   





    

        
            
                X.species
            
                
        
NP_639085.1 lcl|ribA-XCC3740

        
1

	
377

	
S=1535 I=81 E=8.64723e-179

	
GTP cyclohydrolase

     	

   





    

        
            
                X.species
            
                
        
 lcl|RibA-XALc_2850

        
1

	
377

	
S=1248 I=68 E=4.03754e-144

	
putative gtp cyclohydrolase II, riboflavin biosynthesis protein

     	

   





    

        
                pubmed
        
        

        
20

	
369

	
S=388 I=28 E=2.6025e-38

	
GTP cyclohydrolase-2 EC=3.5.4.25 ; Riboflavin biosynthesis

	
Pubmed 18582562

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
183

	
365

	
S=384 I=45 E=9.05444e-38

	
GTP cyclohydrolase-2 EC=3.5.4.25 ; GTP-binding Metal-binding Nucleotide-binding Riboflavin biosynthesis Zinc

	
Pubmed 7883178

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
11

	
369

	
S=376 I=27 E=9.04688e-37

	
GTP cyclohydrolase-2 EC=3.5.4.25 ; Riboflavin biosynthesis

	
Pubmed 11053403

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
178

	
367

	
S=375 I=40 E=9.28664e-37

	
Riboflavin biosynthesis protein ribBA EC=4.1.99.12 EC=3.5.4.25 ; GTP-binding Hydrolase Lyase Magnesium Manganese Metal-binding Multifunctional enzyme

	
Pubmed 18391199

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
14

	
369

	
S=369 I=27 E=5.40421e-36

	
GTP cyclohydrolase-2 EC=3.5.4.25 ; Riboflavin biosynthesis

	
Pubmed 11053403

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
176

	
368

	
S=368 I=40 E=7.52696e-36

	
GTP cyclohydrolase II/3,4-dihydroxy-2-butanone 4-phosphate synthase ; Metal-binding Riboflavin biosynthesis

	
Pubmed 15466513

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
196

	
367

	
S=356 I=43 E=2.10409e-34

	
Riboflavin biosynthesis protein ribBA EC=4.1.99.12 EC=3.5.4.25 ; GTP-binding Hydrolase Lyase Magnesium Manganese Metal-binding Multifunctional enzyme

	
Pubmed 9297088

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
179

	
372

	
S=355 I=43 E=2.80556e-34

	
GTP cyclohydrolase-2 EC=3.5.4.25 ; Riboflavin biosynthesis

	
Pubmed 17541777

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
191

	
369

	
S=354 I=39 E=3.67621e-34

	
GTP cyclohydrolase-2 EC=3.5.4.25 ; Riboflavin biosynthesis

	
Pubmed 11396941

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
180

	
368

	
S=350 I=42 E=1.16204e-33

	
GTP cyclohydrolase-2 EC=3.5.4.25 ; GTP-binding Metal-binding Nucleotide-binding Riboflavin biosynthesis Zinc

	
Pubmed 8320220

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
1

	
377

	
S=1192 I=62 E=8.12636e-136

	
GTP cyclohydrolase-2 EC=3.5.4.25 ; GTP-binding Metal-binding Nucleotide-binding Riboflavin biosynthesis Zinc

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
1

	
377

	
S=1192 I=62 E=8.26931e-136

	
GTP cyclohydrolase-2 EC=3.5.4.25 ; GTP-binding Metal-binding Nucleotide-binding Riboflavin biosynthesis Zinc

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
183

	
365

	
S=384 I=45 E=6.23501e-38

	
GTP cyclohydrolase-2 EC=3.5.4.25 ; GTP-binding Metal-binding Nucleotide-binding Riboflavin biosynthesis Zinc

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
178

	
367

	
S=375 I=40 E=6.3949e-37

	
Riboflavin biosynthesis protein ribBA EC=4.1.99.12 EC=3.5.4.25 ; GTP-binding Hydrolase Lyase Magnesium Manganese Metal-binding Multifunctional enzyme

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
189

	
372

	
S=372 I=40 E=1.91838e-36

	
Riboflavin biosynthesis protein ribBA EC=4.1.99.12 EC=3.5.4.25 ; GTP-binding Hydrolase Lyase Magnesium Manganese Metal-binding Multifunctional enzyme

	

    

    

         
        
prodomImg

    





    

        Iprscan
        
	[MF_00179]
	
173

	
369

	
	
-

    





    

        Iprscan
        IPR016299
	[PIRSF001259]
	
1

	
372

	
	
Riboflavin biosynthesis protein RibA

    





    

        Iprscan
        IPR000926
	[PF00925]
	
176

	
344

	
	
GTP cyclohydrolase II

    





    

        Iprscan
        
	[seg]
	
58

	
67

	
	
-

    





    

        Iprscan
        
	[seg]
	
129

	
143

	
	
-

    





    

        Iprscan
        
	[seg]
	
310

	
321

	
	
-

    





    

        
            
                
            
                
        
PD310044

        
13

	
190

	
S=613 I=72 E=8.48306e-67

    	
    





    

        
            
                
            
                
        
PD003336

        
180

	
299

	
S=277 I=47 E=4.2258e-26

    	
    





    

        
            
                
            
                
        
PDA1T3Y5

        
344

	
377

	
S=159 I=94 E=8.53738e-12

    	
    





    

        
            
                
            
                
        
PDA1T3Y7

        
344

	
377

	
S=115 I=62 E=2.01546e-06

    	
    





    

        
            
                
            
                
        
PDA1H3V8

        
285

	
338

	
S=104 I=44 E=4.81574e-05

    	
    




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                pubmed
            
        
	    
            
Set of Uniprot with relevant PubMed cross-references ncbi-blastp

        		
 	    
            42 hits
        
    

    

        
            
                swiss-prot
            
        
	    
            
Swiss-Prot ncbi-blastp

        		
 	    
            185 hits
        
    

    
    
    

        
            
                XFF4834R
            
        
    	
            
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp

        		        
        
            0 hits
        
    

        
    

        
            
                hamap
            
        
	
            
HAMAP scan

        		        
        
            1 hits
        
    

    
    

	    
            
                Interpro Scan
            
            
	        
                
IprScan

            		        
            
                6 hits
            
    








Show or not Miscellaneous analyses




    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetLocalBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBWLHlR4/XFF4834R_chr36840.xml_fasta", "https://iant.toulouse.inra.fr/bacteria/annotation/web/img/XFF4834R.png"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

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  • ERROR Tag PERLLIB Portal/Tools.pl GetNcbiBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBWLHlR4/XFF4834R_chr36840.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

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  • ERROR Tag PERLLIB Portal/Tools.pl GetUniprotBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBWLHlR4/XFF4834R_chr36840.xml_fasta"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

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  • ERROR Tag PERLLIB Portal/Tools.pl GetKeggBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBWLHlR4/XFF4834R_chr36840.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

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