Xanthomonas fuscans subsp. fuscans

8 hits

  1. XFF4834R_chr09540ispEXFF4834R_chr095404-diphosphocytidyl-2-C-methylerythritol kinase
  2. XFF4834R_chr18700ispAXFF4834R_chr18700probable geranyltranstransferase
  3. XFF4834R_chr19280ispGXFF4834R_chr192801-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase
  4. XFF4834R_chr27890ispFXFF4834R_chr27890probable 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
  5. XFF4834R_chr27900ispDXFF4834R_chr27900probable 4-diphosphocytidyl-2C-methyl-D-erythritol synthase
  6. XFF4834R_chr30800ispUXFF4834R_chr30800probable secreted undecaprenyl pyrophosphate synthase protein
  7. XFF4834R_chr30820dxrXFF4834R_chr30820probable 1-deoxy-D-xylulose 5-phosphate reductoisomerase protein
  8. XFF4834R_chr32830ispHXFF4834R_chr32830probable 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase, 4Fe-4S protein

ispE XFF4834R_chr09540
XFF4834R_chr09530
XFF4834R_chr09530 		Cluster
DrawMap 		XML file

FASTA file 		Extract
Sequence 		Codon
Usage 		Framed OrthoMCL XFF4834R_chr09550
XFF4834R_chr09550
ID ispE
AC XFF4834R_chr09540
LT XFF4834R_chr09540
OR XFF4834R_chr from 1095939 to 1096826 on strand +
DE 4-diphosphocytidyl-2-C-methylerythritol kinase
IP 4-diphosphocytidyl-2C-methyl-D-erythritol kinase
CL 1.5.3.19 Isoprenoid biosynthesis GO:0008299
EC
GO InterPro
Biological Process: terpenoid biosynthetic process (GO:0016114)
Biological Process: phosphorylation (GO:0016310)
Molecular Function: kinase activity (GO:0016301)
Molecular Function: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity (GO:0050515)
Molecular Function: ATP binding (GO:0005524)

Curated
PM
AN la publi sur le fonctionnel est avec l ancien nom du gene YchB
CC COG: [I] Lipid transport and metabolism;
CC MODEL: XFF4834R
CC STATUS: curated by brin (20100723)
MW 31086 Da
SQ 295 aa
  
........10........20........30........40........50
         |         |         |         |         |
MDRIALMDAPGSDWSAWPAPAKLNLFLQITGRRADGYHLLQTVFRLLDWG
DTVHLRVRRGGQIRRAGESLPGVAEDDDLVIRAARLLQSATGTQAGAEIR
VDKRIPAGGGFGGGSSDAATVLVALNALWGLGLAADALAELGLQLGADVP
VFVRGHNAWAEGVGEQLTPISLPEAAYLLVDPGVHVPTPALFRSQELTRD
AAPAKIADFASGSLLDNAFEPVLRRREPAVEAVFQALSRVGTPRLTGSGS
GCFVEFAMRAAAEQALAQLPGGLRAWVAEGASHSPLLDARDARQV

    






    

        
            
                X.species
            
                
        
NP_641300.1 lcl|ipk-XAC0948

        
1

	
295

	
S=1214 I=83 E=4.39664e-140

	
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase

     	

   





    

        
            
                X.species
            
                
        
YP_362710.1 lcl|ispE-XCV0979

        
1

	
295

	
S=1158 I=80 E=2.39504e-133

	
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase

     	

   





    

        
            
                X.species
            
                
        
NP_636262.1 lcl|ipk-XCC0871

        
1

	
295

	
S=1074 I=73 E=3.97274e-123

	
4-diphosphocytidyl-2-C-methyl-D-erythritolkinase

     	

   





    

        
            
                X.species
            
                
        
 lcl|ispE-XALc_0490

        
6

	
289

	
S=861 I=63 E=2.64883e-97

	
probable 4-diphosphocytidyl-2-c-methyl-d-erythritol kinase protein

     	

   





    

        
                pubmed
        
        

        
14

	
295

	
S=746 I=59 E=1.01503e-81

	
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase EC=2.7.1.148 ; ATP-binding Isoprene biosynthesis Nucleotide-binding Transferase

	
Pubmed 19218412

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
15

	
286

	
S=499 I=41 E=7.55469e-52

	
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase EC=2.7.1.148 ; ATP-binding Isoprene biosynthesis Nucleotide-binding Transferase

	
Pubmed 1427085,7679718

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
15

	
286

	
S=491 I=41 E=7.48285e-51

	
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase EC=2.7.1.148 ; ATP-binding Isoprene biosynthesis Nucleotide-binding Transferase

	
Pubmed 7679718

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
15

	
286

	
S=490 I=41 E=8.83102e-51

	
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase EC=2.7.1.148 ; ATP-binding Isoprene biosynthesis Nucleotide-binding Transferase

	
Pubmed 12878729

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
18

	
286

	
S=467 I=41 E=6.05485e-48

	
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase EC=2.7.1.148 ; ATP-binding Isoprene biosynthesis Nucleotide-binding Transferase

	
Pubmed 7883699

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
1

	
295

	
S=1214 I=83 E=1.2337e-138

	
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase EC=2.7.1.148 ; ATP-binding Isoprene biosynthesis Nucleotide-binding Transferase

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
1

	
295

	
S=1158 I=80 E=6.72049e-132

	
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase EC=2.7.1.148 ; ATP-binding Isoprene biosynthesis Nucleotide-binding Transferase

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
1

	
295

	
S=1125 I=79 E=7.90485e-128

	
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase EC=2.7.1.148 ; ATP-binding Isoprene biosynthesis Nucleotide-binding Transferase

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
1

	
295

	
S=1125 I=79 E=7.90485e-128

	
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase EC=2.7.1.148 ; ATP-binding Isoprene biosynthesis Nucleotide-binding Transferase

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
1

	
295

	
S=1074 I=73 E=1.11475e-121

	
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase EC=2.7.1.148 ; ATP-binding Isoprene biosynthesis Nucleotide-binding Transferase

	

    

    

         
        
prodomImg

    





    

        Iprscan
        IPR014721
	[G3DSA:3.30.230.10]
	
15

	
172

	
	
Ribosomal protein S5 domain 2-type fold, subgroup

    





    

        Iprscan
        IPR004424
	[MF_00061]
	
15

	
283

	
	
4-diphosphocytidyl-2C-methyl-D-erythritol kinase

    





    

        Iprscan
        IPR004424
	[PIRSF010376]
	
13

	
289

	
	
4-diphosphocytidyl-2C-methyl-D-erythritol kinase

    





    

        Iprscan
        IPR004424
	[PTHR20861:SF2]
	
58

	
269

	
	
4-diphosphocytidyl-2C-methyl-D-erythritol kinase

    





    

        Iprscan
        
	[PTHR20861]
	
58

	
269

	
	
-

    





    

        Iprscan
        IPR006204
	[PF00288]
	
99

	
155

	
	
GHMP kinase

    





    

        Iprscan
        IPR013750
	[PF08544]
	
213

	
269

	
	
GHMP kinase, C-terminal

    





    

        Iprscan
        IPR004424
	[TIGR00154]
	
15

	
292

	
	
4-diphosphocytidyl-2C-methyl-D-erythritol kinase

    





    

        Iprscan
        
	[seg]
	
108

	
114

	
	
-

    





    

        Iprscan
        
	[seg]
	
122

	
147

	
	
-

    





    

        Iprscan
        
	[seg]
	
260

	
269

	
	
-

    





    

        
            
                
            
                
        
PD250946

        
19

	
87

	
S=190 I=55 E=1.46354e-15

    	
    





    

        
            
                
            
                
        
PDA0V337

        
178

	
282

	
S=150 I=35 E=1.22422e-10

    	
    





    

        
            
                
            
                
        
PDA306I2

        
52

	
85

	
S=126 I=74 E=8.4672e-08

    	
    





    

        
            
                
            
                
        
PDA2G7M9

        
270

	
295

	
S=106 I=81 E=2.18647e-05

    	
    





    

        Iprscan
        IPR020568
	[SSF54211]
	
13

	
170

	
	
Ribosomal protein S5 domain 2-type fold

    





    

        Iprscan
        
	[SSF55060]
	
171

	
291

	
	
-

    




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                pubmed
            
        
	    
            
Set of Uniprot with relevant PubMed cross-references ncbi-blastp

        		
 	    
            27 hits
        
    

    

        
            
                swiss-prot
            
        
	    
            
Swiss-Prot ncbi-blastp

        		
 	    
            0 hits
        
    

    
    
    

        
            
                XFF4834R
            
        
    	
            
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp

        		        
        
            0 hits
        
    

        
    

        
            
                hamap
            
        
	
            
HAMAP scan

        		        
        
            0 hits
        
    

    
    

	    
            
                Interpro Scan
            
            
	        
                
IprScan

            		        
            
                13 hits
            
    








Show or not Miscellaneous analyses




    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetLocalBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBphM1jH/XFF4834R_chr09540.xml_fasta", "https://iant.toulouse.inra.fr/bacteria/annotation/web/img/XFF4834R.png"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    
    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetNcbiBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBphM1jH/XFF4834R_chr09540.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetUniprotBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBphM1jH/XFF4834R_chr09540.xml_fasta"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetKeggBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBphM1jH/XFF4834R_chr09540.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    

    






ispA XFF4834R_chr18700




    

         
             
            XFF4834R_chr18690
            
XFF4834R_chr18690
            
        		


       
           
	   Cluster
	   
DrawMap
	   
        		
	
        
            XML file
        	


	    FASTA file
        		
	
	
             
            Extract
Sequence
            
        		
	
	
             
            Codon
Usage
            
        		
    
    
            
            Framed
            
     
  	



	
            OrthoMCL
            
    
  	
    
    
    

     


	
             
            XFF4834R_chr18710
            
XFF4834R_chr18710
            
        		

    





    

        ID
        ispA
    

    

        AC
        XFF4834R_chr18700
    

    

        LT
        XFF4834R_chr18700
    

    

        OR
        XFF4834R_chr from 2141338 to 2142213 on strand -
    

   

        DE
        probable geranyltranstransferase
  

   

        IP
        Polyprenyl synthetase; Terpenoid synthase
  
  
  
  

        CL
        1.5.3.19 Isoprenoid biosynthesis	GO:0008299 
    

  

        EC
        
    

    
    

        GO
        
            InterPro
Biological Process: isoprenoid biosynthetic process (GO:0008299)


            Curated

        		
    


  

        PM
        
    

  

        AN
        
    

  

        CC
        COG: [H] Coenzyme transport and metabolism; 
    

    

        CC
        MODEL: XFF4834R 
  
    
  

        CC
        STATUS: curated by pieretti (20100408)
  

  
  


    

        MW
        30500.3 Da
    


    

        SQ
        291 aa
    

    

         
        
........10........20........30........40........50
         |         |         |         |         |
VSSALFDRWIARTERSLEAGLPSATHAPQRLHAAMRHAVLGGGKRMRPLL
VYASGALFGAAEDQLDTPAVAVELIHAYSLVHDDLPAMDDDALRRGQPTV
HIAFDEATAILAGDALQTRAFELLATAPASAELRVGWMQSLANAAGAAGM
CGGQALDIDATGQLQSLQHLQRMHALKTGALIRAAVRMGALTGGAAAADQ
QRLDEFADALGLAFQVRDDILDVESSSAQLGKTAGKDAAQSKSTYPALLG
MDGAKAKLAELAARMHDVLQPYGQPGETLATLGRFAVNRAH

    





Show or not Domain decomposition
 

    

        
            
                XFF4834R
            
                
        
XFF4834R_chr17330 lcl|ispB-XFF4834R_chr17330

        
37

	
260

	
S=267 I=34 E=6.31643e-26

	
octaprenyl diphosphate synthase

     	

   





    

        
            
                XFF4834R
            
                
        
XFF4834R_chr17330 lcl|ispB-XFF4834R_chr17330

        
37

	
260

	
S=267 I=34 E=6.31643e-26

	
octaprenyl diphosphate synthase

     	

   





    

        
            
                X.species
            
                
        
NP_643071.1 lcl|ispA-XAC2762

        
1

	
291

	
S=1249 I=93 E=2.373e-144

	
farnesyl-diphosphate synthase

     	

   





    

        
            
                X.species
            
                
        
YP_364647.1 lcl|ispA-XCV2916

        
1

	
291

	
S=1238 I=92 E=5.1515e-143

	
geranyltranstransferase

     	

   





    

        
            
                X.species
            
                
        
NP_637948.1 lcl|ispA-XCC2600

        
1

	
291

	
S=1182 I=82 E=3.19833e-136

	
farnesyl-diphosphate synthase

     	

   





    

        
            
                X.species
            
                
        
 lcl|IspA-XALc_2454

        
3

	
291

	
S=949 I=70 E=4.95968e-108

	
putative geranylgeranyl pyrophosphate synthase protein

     	

   





    

        
            
                X.species
            
                
        
YP_364781.1 lcl|ispB-XCV3050

        
37

	
251

	
S=269 I=35 E=1.42618e-25

	
octaprenyl-diphosphate synthase

     	

   





    

        
            
                X.species
            
                
        
NP_643215.1 lcl|ispB-XAC2906

        
37

	
251

	
S=268 I=35 E=1.80472e-25

	
octaprenyl-diphosphate synthase

     	

   





    

        
            
                X.species
            
                
        
 lcl|XALc_1041

        
37

	
246

	
S=266 I=34 E=2.99244e-25

	
putative octaprenyl-diphosphate synthase protein

     	

   





    

        
            
                X.species
            
                
        
NP_638084.1 lcl|ispB-XCC2736

        
37

	
248

	
S=256 I=35 E=5.3624e-24

	
octaprenyl-diphosphate synthase

     	

   





    

        
                pubmed
        
        

        
6

	
289

	
S=659 I=50 E=2.58428e-71

	
Farnesyl diphosphate synthase (SelFPS) ; Isoprene biosynthesis Transferase

	
Pubmed 10412909

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
6

	
255

	
S=508 I=43 E=6.24915e-53

	
Geranyl diphosphate synthase large subunit Geranyl pyrophosphate synthase large subunit Gpp synthase large subunit ; Isoprene biosynthesis Transferase

	
Pubmed 10557273

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
6

	
272

	
S=506 I=44 E=9.25153e-53

	
Geranylgeranyl diphosphate synthase EC=2.5.1.29 ; Isoprene biosynthesis Transferase

	
Pubmed 17634749

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
12

	
272

	
S=504 I=42 E=1.58846e-52

	
Geranylgeranyl pyrophosphate synthase 1 ; Isoprene biosynthesis Transferase

	
Pubmed 16786318

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
5

	
283

	
S=501 I=41 E=4.52228e-52

	
Geranylgeranyl diphosphate synthase ; Isoprene biosynthesis Transferase

	
Pubmed 15352294

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
6

	
261

	
S=500 I=43 E=4.72378e-52

	
Geranylgeranyl pyrophosphate synthetase, chloroplastic EC=2.5.1.1 EC=2.5.1.10 EC=2.5.1.29 ; Carotenoid biosynthesis Isoprene Multifunctional enzym

	
Pubmed 1303794,7888631

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
35

	
261

	
S=500 I=53 E=4.97747e-52

	
Geranyltranstransferase EC=2.5.1.10 ; Cytoplasm Isoprene biosynthesis

	
Pubmed 2089044

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
22

	
289

	
S=498 I=48 E=8.472e-52

	
Farnesyl diphosphate synthase Polyprenyl synthetase ; Isoprene biosynthesis Transferase

	
Pubmed 12189420

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
12

	
273

	
S=498 I=42 E=1.02633e-51

	
Putative geranylgeranyl pyrophosphate synthase ; Isoprene biosynthesis Transferase

	
Pubmed 17186217

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
6

	
274

	
S=497 I=41 E=1.25423e-51

	
Geranylgeranyl diphosphate synthase ; Isoprene biosynthesis Transferase

	
Pubmed 9826430

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
12

	
261

	
S=531 I=49 E=7.16052e-56

	
Geranyltranstransferase EC=2.5.1.10 ; Cytoplasm Isoprene biosynthesis

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
6

	
261

	
S=500 I=43 E=3.25618e-52

	
Geranylgeranyl pyrophosphate synthetase, chloroplastic EC=2.5.1.1 EC=2.5.1.10 EC=2.5.1.29 ; Carotenoid biosynthesis Isoprene Multifunctional enzym

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
35

	
261

	
S=500 I=53 E=3.43105e-52

	
Geranyltranstransferase EC=2.5.1.10 ; Cytoplasm Isoprene biosynthesis

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
28

	
255

	
S=496 I=46 E=1.00269e-51

	
Geranylgeranyl pyrophosphate synthetase, chloroplastic EC=2.5.1.1 EC=2.5.1.10 EC=2.5.1.29 ; Carotenoid biosynthesis Isoprene Multifunctional enzyme Plastid Transfe

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
17

	
289

	
S=496 I=40 E=1.26883e-51

	
Geranyltranstransferase EC=2.5.1.10 ; Cytoplasm Isoprene biosynthesis

	

    

    

         
        
prodomImg

    





    

        
            
                
            
                
        
PD000572

        
6

	
248

	
S=406 I=43 E=1.0632e-41

    	
    





    

        
            
                
            
                
        
PDA4B0N2

        
199

	
291

	
S=169 I=43 E=5.34963e-13

    	
    





    

        
            
                
            
                
        
PDA28265

        
267

	
291

	
S=135 I=100 E=7.17157e-09

    	
    





    

        
            
                
            
                
        
PDA2H3P5

        
255

	
291

	
S=134 I=70 E=8.46365e-09

    	
    





    

        
            
                
            
                
        
PD410808

        
166

	
248

	
S=132 I=37 E=1.90416e-08

    	
    





    

        
            
                
            
                
        
PD122970

        
40

	
241

	
S=125 I=28 E=1.15747e-07

    	
    





    

        
            
                
            
                
        
PD153235

        
4

	
48

	
S=121 I=52 E=3.95737e-07

    	
    





    

        
            
                
            
                
        
PDA348W4

        
216

	
255

	
S=118 I=53 E=7.94926e-07

    	
    





    

        
            
                
            
                
        
PDA4H3X7

        
71

	
104

	
S=102 I=59 E=6.49399e-05

    	
    




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                pubmed
            
        
	    
            
Set of Uniprot with relevant PubMed cross-references ncbi-blastp

        		
 	    
            127 hits
        
    

    

        
            
                swiss-prot
            
        
	    
            
Swiss-Prot ncbi-blastp

        		
 	    
            50 hits
        
    

    
    
    

        
            
                XFF4834R
            
        
    	
            
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp

        		        
        
            2 hits
        
    

        
    

        
            
                hamap
            
        
	
            
HAMAP scan

        		        
        
            0 hits
        
    

    
    

	    
            
                Interpro Scan
            
            
	        
                
IprScan

            		        
            
                0 hits
            
    








Show or not Miscellaneous analyses




    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetLocalBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBphM1jH/XFF4834R_chr18700.xml_fasta", "https://iant.toulouse.inra.fr/bacteria/annotation/web/img/XFF4834R.png"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    
    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetNcbiBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBphM1jH/XFF4834R_chr18700.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetUniprotBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBphM1jH/XFF4834R_chr18700.xml_fasta"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetKeggBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBphM1jH/XFF4834R_chr18700.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    

    






ispG XFF4834R_chr19280




    

         
             
            XFF4834R_chr19270
            
XFF4834R_chr19270
            
        		


       
           
	   Cluster
	   
DrawMap
	   
        		
	
        
            XML file
        	


	    FASTA file
        		
	
	
             
            Extract
Sequence
            
        		
	
	
             
            Codon
Usage
            
        		
    
    
            
            Framed
            
     
  	



	
            OrthoMCL
            
    
  	
    
    
    

     


	
             
            XFF4834R_chr_4659
            
XFF4834R_chr_4659
            
        		

    





    

        ID
        ispG
    

    

        AC
        XFF4834R_chr19280
    

    

        LT
        XFF4834R_chr19280
    

    

        OR
        XFF4834R_chr from 2207927 to 2209192 on strand +
    

   

        DE
        1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase
  

   

        IP
        4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type
  
  
  
  

        CL
        1.5.3.19 Isoprenoid biosynthesis	GO:0008299 
    

  

        EC
        
    

    
    

        GO
        
            InterPro
Biological Process: oxidation reduction (GO:0055114)
Biological Process: terpenoid biosynthetic process (GO:0016114)
Biological Process: cellular metabolic process (GO:0044237)
Biological Process: isoprenoid biosynthetic process (GO:0008299)
Molecular Function: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity (GO:0046429)
Molecular Function: iron ion binding (GO:0005506)


            Curated

        		
    


  

        PM
        
    

  

        AN
        s appelle aussi gcpE
    

  

        CC
        COG: [I] Lipid transport and metabolism; 
    

    

        CC
        MODEL: XFF4834R 
  
    
  

        CC
        STATUS: curated by brin (20100812)
  

  
  


    

        MW
        45186.2 Da
    


    

        SQ
        421 aa
    

    

         
        
........10........20........30........40........50
         |         |         |         |         |
MHDAVTRPTPPADATAWPRRITQAVKIGSVTVGGGHPVVVQSMTNTDTAD
IAGSVKQVADLWRAGSEMVRLTVNNAESAAAIPRIVDKLRMMGIEVPLIG
DFHYNGHQLLAAEPACAEALAKYRINPGNVGFGKKKDLQFGQLIEFAIKY
GKPVRIGANWGSLDQSLAAQLMDENSQRDTPWDAGRVLREALIRSAVDSA
ERAVELGLPRERIILSAKVSGVQELIAVYRDMASRCDFALHLGLTEAGIG
SKGIVASAAALSVLLQEGIGDTIRISLTPEPGQSRTQEVVVAQELLQTTG
QRAFTPMVTACPGCGRTTSEFFQELAGVVQNHVRARMPEWKISNPGAENM
TLAVMGCVVNGPGESRHANIGISLPGTGEAPSAPVFIDGEKSVTLRGENI
AYEFIELIDQYVERTYVRRVG

    






    

        
            
                X.species
            
                
        
YP_363560.1 lcl|ispG-XCV1829

        
1

	
421

	
S=2083 I=94 E=0

	
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase

     	

   





    

        
            
                X.species
            
                
        
NP_642126.1 lcl|ispG-XAC1799

        
1

	
421

	
S=2078 I=93 E=0

	
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase

     	

   





    

        
            
                X.species
            
                
        
NP_637147.1 lcl|ispG-XCC1781

        
1

	
421

	
S=2013 I=89 E=0

	
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase

     	

   





    

        
            
                X.species
            
                
        
 lcl|ispG-XALc_1214

        
1

	
421

	
S=1838 I=82 E=0

	
probable 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase) protein

     	

   





    

        
                pubmed
        
        

        
19

	
416

	
S=1144 I=54 E=7.88945e-130

	
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase EC=1.17.7.1 ; 4Fe-4S Iron Iron-sulfur Isoprene biosynthesis Metal-binding Oxidoreductase

	
Pubmed 12482607

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
13

	
416

	
S=1000 I=48 E=2.41617e-112

	
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase EC=1.17.7.1 ; 4Fe-4S Iron Iron-sulfur Isoprene biosynthesis Metal-binding Oxidoreductase

	
Pubmed 18550617

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
20

	
416

	
S=997 I=48 E=5.06967e-112

	
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase EC=1.17.7.1 ; 4Fe-4S Iron Iron-sulfur Isoprene biosynthesis Metal-binding Oxidoreductase

	
Pubmed 15618402

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
19

	
416

	
S=989 I=48 E=5.29115e-111

	
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase EC=1.17.7.1 ; 4Fe-4S Iron Iron-sulfur Isoprene biosynthesis Metal-binding Oxidoreductase

	
Pubmed 15780005

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
19

	
416

	
S=988 I=48 E=7.17923e-111

	
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase EC=1.17.7.1 ; 4Fe-4S Iron Iron-sulfur Isoprene biosynthesis Metal-binding Oxidoreductase

	
Pubmed 19307581

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
1

	
421

	
S=2083 I=94 E=0

	
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase EC=1.17.7.1 ; 4Fe-4S Iron Iron-sulfur Isoprene biosynthesis Metal-binding Oxidoreductase

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
1

	
421

	
S=2078 I=93 E=0

	
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase EC=1.17.7.1 ; 4Fe-4S Iron Iron-sulfur Isoprene biosynthesis Metal-binding Oxidoreductase

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
1

	
421

	
S=2014 I=90 E=0

	
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase EC=1.17.7.1 ; 4Fe-4S Iron Iron-sulfur Isoprene biosynthesis Metal-binding Oxidoreductase

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
1

	
421

	
S=2013 I=89 E=0

	
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase EC=1.17.7.1 ; 4Fe-4S Iron Iron-sulfur Isoprene biosynthesis Metal-binding Oxidoreductase

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
1

	
421

	
S=2013 I=89 E=0

	
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase EC=1.17.7.1 ; 4Fe-4S Iron Iron-sulfur Isoprene biosynthesis Metal-binding Oxidoreductase

	

    

    

         
        
prodomImg

    





    

        Iprscan
        IPR004588
	[MF_00159]
	
17

	
411

	
	
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type

    





    

        Iprscan
        IPR016425
	[PIRSF004640]
	
15

	
420

	
	
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial

    





    

        Iprscan
        IPR004588
	[PF04551]
	
22

	
411

	
	
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type

    





    

        Iprscan
        IPR004588
	[TIGR00612]
	
19

	
409

	
	
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type

    





    

        Iprscan
        
	[seg]
	
109

	
121

	
	
-

    





    

        Iprscan
        
	[seg]
	
255

	
265

	
	
-

    





    

        
            
                
            
                
        
PD008743

        
54

	
371

	
S=397 I=34 E=1.1681e-40

    	
    





    

        
            
                
            
                
        
PD882956

        
374

	
416

	
S=166 I=70 E=1.44398e-12

    	
    





    

        
            
                
            
                
        
PDA1F7A8

        
19

	
51

	
S=111 I=64 E=6.66515e-06

    	
    





    

        Iprscan
        IPR011005
	[SSF51717]
	
20

	
299

	
	
Dihydropteroate synthase-like

    




Show or not Suggestions
Suggest an annotation


Move your mouse over each field to get more informations


ID


DE


EC


GO


PM



CC


CL

 
  Your email  
 
  Validation code (copy this one 1iUTE7Mk)  
 
     



Show or not Access unfiltered results






    

       
            
                pubmed
            
        
	    
            
Set of Uniprot with relevant PubMed cross-references ncbi-blastp

        		
 	    
            35 hits
        
    

    

        
            
                swiss-prot
            
        
	    
            
Swiss-Prot ncbi-blastp

        		
 	    
            447 hits
        
    

    
    
    

        
            
                XFF4834R
            
        
    	
            
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp

        		        
        
            0 hits
        
    

        
    

        
            
                hamap
            
        
	
            
HAMAP scan

        		        
        
            0 hits
        
    

    
    

	    
            
                Interpro Scan
            
            
	        
                
IprScan

            		        
            
                7 hits
            
    








Show or not Miscellaneous analyses




    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetLocalBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBphM1jH/XFF4834R_chr19280.xml_fasta", "https://iant.toulouse.inra.fr/bacteria/annotation/web/img/XFF4834R.png"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    
    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetNcbiBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBphM1jH/XFF4834R_chr19280.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetUniprotBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBphM1jH/XFF4834R_chr19280.xml_fasta"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetKeggBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBphM1jH/XFF4834R_chr19280.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    

    






ispF XFF4834R_chr27890




    

         
             
            XFF4834R_chr27880
            
XFF4834R_chr27880
            
        		


       
           
	   Cluster
	   
DrawMap
	   
        		
	
        
            XML file
        	


	    FASTA file
        		
	
	
             
            Extract
Sequence
            
        		
	
	
             
            Codon
Usage
            
        		
    
    
            
            Framed
            
     
  	



	
            OrthoMCL
            
    
  	
    
    
    

     


	
             
            XFF4834R_chr27900
            
XFF4834R_chr27900
            
        		

    





    

        ID
        ispF
    

    

        AC
        XFF4834R_chr27890
    

    

        LT
        XFF4834R_chr27890
    

    

        OR
        XFF4834R_chr from 3217021 to 3217521 on strand -
    

   

        DE
        probable 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
  

   

        IP
        2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core
  
  
  
  

        CL
        1.5.3.19 Isoprenoid biosynthesis	GO:0008299 
    

  

        EC
        
    

    
    

        GO
        
            InterPro
4-cyclodiphosphate synthase activity (GO:0008685)
Biological Process: terpenoid biosynthetic process (GO:0016114)


            Curated

        		
    


  

        PM
        
    

  

        AN
        
    

  

        CC
        COG: [I] Lipid transport and metabolism; 
    

    

        CC
        MODEL: XFF4834R 
  
    
  

        CC
        STATUS: validated by jacques (20110713)
  

  
  


    

        MW
        17518.9 Da
    


    

        SQ
        166 aa
    

    

         
        
........10........20........30........40........50
         |         |         |         |         |
MSFNFRIGQGYDVHAFGPGDHVMLGGVRVAHSHGVLAHSDGDVVLHALCD
AMLGALALGDIGLHFPPSDARWKDADSAQFLQHCDGLLRERGWCVGNADI
TVICERPKVGPHAVVMRERIAGLLAIELDAVSVKATTSEQLGFTGRGEGI
AAQAAVLLGRIAAPHQ

    





Show or not Domain decomposition
 

    

        
            
                X.species
            
                
        
NP_642053.1 lcl|ispF-XAC1722

        
1

	
166

	
S=829 I=98 E=9.49487e-94

	
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase

     	

   





    

        
            
                X.species
            
                
        
YP_363486.1 lcl|ispF-XCV1755

        
1

	
166

	
S=828 I=97 E=1.11083e-93

	
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase

     	

   





    

        
            
                X.species
            
                
        
NP_637073.1 lcl|ispF-XCC1703

        
1

	
163

	
S=774 I=91 E=4.3069e-87

	
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase

     	

   





    

        
            
                X.species
            
                
        
 lcl|ispF-XALc_1154

        
5

	
158

	
S=667 I=84 E=4.11438e-74

	
probable 2-c-methyl-d-erythritol 2,4-cyclodiphosphate synthase (mecdp-synthase) protein

     	

   





    

        
                pubmed
        
        

        
1

	
158

	
S=485 I=61 E=1.41224e-50

	
Bifunctional enzyme ispD/ispF EC=2.7.7.60 EC=4.6.1.12 ; Isoprene biosynthesis Lyase Metal-binding Multifunctional Nucleotidyltransferase

	
Pubmed 8355615

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
8

	
154

	
S=471 I=59 E=7.79291e-49

	
Bifunctional enzyme ispD/ispF EC=2.7.7.60 EC=4.6.1.12 ; Isoprene biosynthesis Lyase Metal-binding Multifunctional Nucleotidyltransferase

	
Pubmed 10419959

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
5

	
160

	
S=430 I=51 E=6.69138e-44

	
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase EC=4.6.1.12 ; Isoprene biosynthesis Lyase Metal-binding

	
Pubmed 7510287,7584024

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
5

	
157

	
S=427 I=50 E=1.68611e-43

	
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase EC=4.6.1.12 ; Isoprene biosynthesis Lyase Metal-binding

	
Pubmed 16707693

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
5

	
166

	
S=418 I=47 E=2.15053e-42

	
Bifunctional enzyme ispD/ispF EC=2.7.7.60 EC=4.6.1.12 ; Isoprene biosynthesis Lyase Metal-binding Multifunctional Nucleotidyltransferase

	
Pubmed 15780005

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
1

	
166

	
S=829 I=98 E=2.38784e-92

	
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase EC=4.6.1.12 ; Isoprene biosynthesis Lyase Metal-binding

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
1

	
166

	
S=828 I=97 E=2.79359e-92

	
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase EC=4.6.1.12 ; Isoprene biosynthesis Lyase Metal-binding

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
1

	
163

	
S=808 I=97 E=7.405e-90

	
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase EC=4.6.1.12 ; Isoprene biosynthesis Lyase Metal-binding

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
1

	
163

	
S=808 I=97 E=7.405e-90

	
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase EC=4.6.1.12 ; Isoprene biosynthesis Lyase Metal-binding

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
1

	
163

	
S=808 I=97 E=7.405e-90

	
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase EC=4.6.1.12 ; Isoprene biosynthesis Lyase Metal-binding

	

    

    

         
        
prodomImg

    





    

        Iprscan
        IPR003526
	[G3DSA:3.30.1330.50]
	
5

	
156

	
	
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core

    





    

        Iprscan
        IPR003526
	[MF_00107]
	
5

	
160

	
	
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core

    





    

        Iprscan
        IPR003526
	[PF02542]
	
5

	
159

	
	
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core

    





    

        Iprscan
        IPR003526
	[TIGR00151]
	
6

	
160

	
	
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core

    





    

        Iprscan
        IPR020555
	[PS01350]
	
39

	
54

	
	
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, conserved site

    





    

        
            
                
            
                
        
PD006214

        
11

	
153

	
S=460 I=60 E=2.87179e-48

    	
    





    

        Iprscan
        IPR003526
	[SSF69765]
	
5

	
159

	
	
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core

    




Show or not Suggestions
Suggest an annotation


Move your mouse over each field to get more informations


ID


DE


EC


GO


PM



CC


CL

 
  Your email  
 
  Validation code (copy this one YbNnPFJX)  
 
     



Show or not Access unfiltered results






    

       
            
                pubmed
            
        
	    
            
Set of Uniprot with relevant PubMed cross-references ncbi-blastp

        		
 	    
            38 hits
        
    

    

        
            
                swiss-prot
            
        
	    
            
Swiss-Prot ncbi-blastp

        		
 	    
            525 hits
        
    

    
    
    

        
            
                XFF4834R
            
        
    	
            
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp

        		        
        
            0 hits
        
    

        
    

        
            
                hamap
            
        
	
            
HAMAP scan

        		        
        
            0 hits
        
    

    
    

	    
            
                Interpro Scan
            
            
	        
                
IprScan

            		        
            
                6 hits
            
    








Show or not Miscellaneous analyses




    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetLocalBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBphM1jH/XFF4834R_chr27890.xml_fasta", "https://iant.toulouse.inra.fr/bacteria/annotation/web/img/XFF4834R.png"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    
    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetNcbiBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBphM1jH/XFF4834R_chr27890.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetUniprotBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBphM1jH/XFF4834R_chr27890.xml_fasta"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetKeggBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBphM1jH/XFF4834R_chr27890.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    

    






ispD XFF4834R_chr27900




    

         
             
            XFF4834R_chr27890
            
XFF4834R_chr27890
            
        		


       
           
	   Cluster
	   
DrawMap
	   
        		
	
        
            XML file
        	


	    FASTA file
        		
	
	
             
            Extract
Sequence
            
        		
	
	
             
            Codon
Usage
            
        		
    
    
            
            Framed
            
     
  	



	
            OrthoMCL
            
    
  	
    
    
    

     


	
             
            XFF4834R_chr27910
            
XFF4834R_chr27910
            
        		

    





    

        ID
        ispD
    

    

        AC
        XFF4834R_chr27900
    

    

        LT
        XFF4834R_chr27900
    

    

        OR
        XFF4834R_chr from 3217525 to 3218304 on strand -
    

   

        DE
        probable 4-diphosphocytidyl-2C-methyl-D-erythritol synthase
  

   

        IP
        4-diphosphocytidyl-2C-methyl-D-erythritol synthase
  
  
  
  

        CL
        1.5.3.19 Isoprenoid biosynthesis	GO:0008299 
    

  

        EC
        
    

    
    

        GO
        
            InterPro
Biological Process: isoprenoid biosynthetic process (GO:0008299)
Molecular Function: catalytic activity (GO:0003824)


            Curated

        		
    


  

        PM
        
    

  

        AN
        
    

  

        CC
        COG: [I] Lipid transport and metabolism; 
    

    

        CC
        MODEL: XFF4834R 
  
    
  

        CC
        STATUS: curated by brin (20100813)
  

  
  


    

        MW
        27181.7 Da
    


    

        SQ
        259 aa
    

    

         
        
........10........20........30........40........50
         |         |         |         |         |
MTGSIWAIVPAAGRGTRFGGPLPKQYLQAGGQPLMAYTLAALAAHPALAG
IMVAIAPGDADWPGWTAVQSKPVLTCLGGATRAASVLAGLLALPESVRAD
DFVLVHDAARPNLALADLDRLLEIGRGDPVGAILAAPVRDTLKRAGDDGG
IDGTEPRERLWRALTPQLFRRHQLIRGLTEASAAGVDVTDEAMAMERMGL
RPLLVEGAEDNFKVTTPADLARFAFELASRDCGPGTRDPESAHPQWPVSA
SAFSGPEEI

    






    

        
            
                X.species
            
                
        
NP_642052.1 lcl|ispD-XAC1721

        
1

	
256

	
S=1116 I=91 E=2.92637e-128

	
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase

     	

   





    

        
            
                X.species
            
                
        
YP_363485.1 lcl|ispD-XCV1754

        
1

	
256

	
S=1049 I=88 E=3.6465e-120

	
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase

     	

   





    

        
            
                X.species
            
                
        
NP_637072.1 lcl|ispD-XCC1702

        
1

	
259

	
S=973 I=80 E=5.40495e-111

	
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase

     	

   





    

        
            
                X.species
            
                
        
 lcl|ispD-XALc_1153

        
13

	
234

	
S=754 I=73 E=2.1906e-84

	
probable 2-c-methyl-d-erythritol 4-phosphate cytidylyltransferase (4-diphosphocytidyl-2c-methyl-d-erythritol synthase) (mep cytidylyltransferase) (mct) protein

     	

   





    

        
                pubmed
        
        

        
5

	
227

	
S=382 I=44 E=1.05251e-37

	
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase EC=2.7.7.60 ; Cobalt Isoprene biosynthesis Magnesium Manganese Nucleotidyltransferase

	
Pubmed 10518523

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
5

	
220

	
S=242 I=32 E=8.12899e-21

	
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase ; Nucleotidyltransferase

	
Pubmed 16828818

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
7

	
220

	
S=241 I=33 E=1.33619e-20

	
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase EC=2.7.7.60 ; Isoprene biosynthesis Nucleotidyltransferase

	
Pubmed 18043661

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
4

	
220

	
S=240 I=31 E=1.47068e-20

	
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase EC=2.7.7.60 ; Nucleotidyltransferase

	
Pubmed 18997428

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
4

	
220

	
S=238 I=31 E=3.14011e-20

	
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase EC=2.7.7.60 ; Nucleotidyltransferase

	
Pubmed 18997428

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
1

	
256

	
S=1116 I=91 E=8.07228e-127

	
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase EC=2.7.7.60 ; Isoprene biosynthesis Nucleotidyltransferase

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
1

	
256

	
S=1049 I=88 E=1.00587e-118

	
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase EC=2.7.7.60 ; Isoprene biosynthesis Nucleotidyltransferase

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
3

	
230

	
S=982 I=91 E=1.47923e-110

	
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase EC=2.7.7.60 ; Isoprene biosynthesis Nucleotidyltransferase

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
3

	
230

	
S=981 I=91 E=1.57232e-110

	
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase EC=2.7.7.60 ; Isoprene biosynthesis Nucleotidyltransferase

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
3

	
230

	
S=981 I=91 E=1.57232e-110

	
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase EC=2.7.7.60 ; Isoprene biosynthesis Nucleotidyltransferase

	

    

    

         
        
prodomImg

    





    

        Iprscan
        
	[G3DSA:3.90.550.10]
	
5

	
236

	
	
-

    





    

        Iprscan
        IPR001228
	[MF_00108]
	
4

	
230

	
	
4-diphosphocytidyl-2C-methyl-D-erythritol synthase

    





    

        Iprscan
        IPR001228
	[PF01128]
	
6

	
225

	
	
4-diphosphocytidyl-2C-methyl-D-erythritol synthase

    





    

        Iprscan
        IPR001228
	[TIGR00453]
	
6

	
227

	
	
4-diphosphocytidyl-2C-methyl-D-erythritol synthase

    





    

        Iprscan
        IPR018294
	[PS01295]
	
103

	
110

	
	
4-diphosphocytidyl-2C-methyl-D-erythritol synthase, conserved site

    





    

        Iprscan
        
	[seg]
	
34

	
49

	
	
-

    





    

        
            
                
            
                
        
PD695369

        
157

	
221

	
S=145 I=50 E=4.35026e-10

    	
    





    

        
            
                
            
                
        
PDA38448

        
225

	
256

	
S=143 I=88 E=8.07899e-10

    	
    





    

        
            
                
            
                
        
PDA1V5D2

        
124

	
150

	
S=128 I=100 E=5.12547e-08

    	
    





    

        
            
                
            
                
        
PD105392

        
70

	
143

	
S=126 I=46 E=9.77091e-08

    	
    





    

        
            
                
            
                
        
PDA38432

        
50

	
75

	
S=114 I=85 E=2.73137e-06

    	
    





    

        
            
                
            
                
        
PDA38430

        
50

	
69

	
S=103 I=100 E=5.67654e-05

    	
    





    

        Iprscan
        
	[SSF53448]
	
1

	
229

	
	
-

    




Show or not Suggestions
Suggest an annotation


Move your mouse over each field to get more informations


ID


DE


EC


GO


PM



CC


CL

 
  Your email  
 
  Validation code (copy this one YnbyWTSJ)  
 
     



Show or not Access unfiltered results






    

       
            
                pubmed
            
        
	    
            
Set of Uniprot with relevant PubMed cross-references ncbi-blastp

        		
 	    
            28 hits
        
    

    

        
            
                swiss-prot
            
        
	    
            
Swiss-Prot ncbi-blastp

        		
 	    
            461 hits
        
    

    
    
    

        
            
                XFF4834R
            
        
    	
            
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp

        		        
        
            0 hits
        
    

        
    

        
            
                hamap
            
        
	
            
HAMAP scan

        		        
        
            0 hits
        
    

    
    

	    
            
                Interpro Scan
            
            
	        
                
IprScan

            		        
            
                7 hits
            
    








Show or not Miscellaneous analyses




    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetLocalBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBphM1jH/XFF4834R_chr27900.xml_fasta", "https://iant.toulouse.inra.fr/bacteria/annotation/web/img/XFF4834R.png"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    
    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetNcbiBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBphM1jH/XFF4834R_chr27900.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetUniprotBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBphM1jH/XFF4834R_chr27900.xml_fasta"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetKeggBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBphM1jH/XFF4834R_chr27900.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    

    






ispU XFF4834R_chr30800




    

         
             
            XFF4834R_chr30790
            
XFF4834R_chr30790
            
        		


       
           
	   Cluster
	   
DrawMap
	   
        		
	
        
            XML file
        	


	    FASTA file
        		
	
	
             
            Extract
Sequence
            
        		
	
	
             
            Codon
Usage
            
        		
    
    
            
            Framed
            
     
  	



	
            OrthoMCL
            
    
  	
    
    
    

     


	
             
            XFF4834R_chr30810
            
XFF4834R_chr30810
            
        		

    





    

        ID
        ispU
    

    

        AC
        XFF4834R_chr30800
    

    

        LT
        XFF4834R_chr30800
    

    

        OR
        XFF4834R_chr from 3543698 to 3544459 on strand +
    

   

        DE
        probable secreted undecaprenyl pyrophosphate synthase protein
  

   

        IP
        Di-trans-poly-cis-decaprenylcistransferase-like
  
  
  
  

        CL
        1.5.3.19 Isoprenoid biosynthesis	GO:0008299 
    

  

        EC
        
    

    
    

        GO
        
            InterPro
transferring alkyl or aryl (other than methyl) groups (GO:0016765)


            Curated

        		
    


  

        PM
        
    

  

        AN
        changement de start moins 5 aa
    

  

        CC
        COG: [I] Lipid transport and metabolism; 
    

    

        CC
        MODEL: XFF4834R 
  
    
  

        CC
        STATUS: curated by brin (20100816)
  

  
  


    

        MW
        27997.3 Da
    


    

        SQ
        253 aa
    

    

         
        
........10........20........30........40........50
         |         |         |         |         |
MHPVPSAANVPRHIAIIMDGNGRWAQRRRRPRVIGHRAGARAVNRTIDFC
LEKGVSALTLFAFSSENWGRPQDEVDALMKLFLHALDREVEELQRRGVQV
RFIGDRSRFAAPLRDRMAGAERSTAANSRLVLSIAASYGGRQDIAAAARA
LAEDVAAGRLQPEQIDEALLSSRVALADLPAPDLFIRTGGDTRISNFLLW
QLAYTELWFTETLWPEFDAGVLQQALDDYAGRERRFGLTSAQIADKATES
SSA

    





Show or not Domain decomposition
 

    

        
            
                X.species
            
                
        
NP_641752.1 lcl|uppS-XAC1417

        
1

	
253

	
S=1176 I=94 E=1.54673e-135

	
undecaprenyl pyrophosphate synthetase

     	

   





    

        
            
                X.species
            
                
        
YP_363205.1 lcl|uppS-XCV1474

        
1

	
253

	
S=1165 I=93 E=3.50738e-134

	
undecaprenyl pyrophosphate synthetase

     	

   





    

        
            
                X.species
            
                
        
NP_636743.1 lcl|uppS-XCC1369

        
1

	
253

	
S=1147 I=90 E=5.18383e-132

	
undecaprenyl pyrophosphate synthetase

     	

   





    

        
            
                X.species
            
                
        
 lcl|uppS-XALc_2030

        
1

	
250

	
S=951 I=77 E=2.64216e-108

	
probable undecaprenyl pyrophosphate synthase protein

     	

   





    

        
                pubmed
        
        

        
10

	
237

	
S=596 I=49 E=1.11112e-63

	
Undecaprenyl pyrophosphate synthase EC=2.5.1.31 ; Cell cycle division shape wall biogenesis/degradation Peptidoglycan synthesis Transferase

	
Pubmed 12446909

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
7

	
237

	
S=548 I=46 E=8.07735e-58

	
Undecaprenyl pyrophosphate synthase EC=2.5.1.31 ; Cell cycle division shape wall biogenesis/degradation Peptidoglycan synthesis Transferase

	
Pubmed 12955602

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
10

	
237

	
S=540 I=46 E=6.48999e-57

	
Undecaprenyl pyrophosphate synthase EC=2.5.1.31 ; Transferase

	
Pubmed 18459973

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
11

	
237

	
S=518 I=48 E=3.60961e-54

	
Undecaprenyl-diphosphate synthase EC=2.5.1.31 ; Transferase

	
Pubmed 12384294

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
6

	
237

	
S=493 I=40 E=3.2429e-51

	
Undecaprenyl pyrophosphate synthase EC=2.5.1.31 ; Cell cycle division shape wall biogenesis/degradation Peptidoglycan synthesis Transferase

	
Pubmed 9677368,3182755

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
1

	
253

	
S=1176 I=94 E=4.251e-134

	
Undecaprenyl pyrophosphate synthase EC=2.5.1.31 ; Cell cycle division shape wall biogenesis/degradation Peptidoglycan synthesis Transferase

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
1

	
253

	
S=1173 I=92 E=9.99008e-134

	
Undecaprenyl pyrophosphate synthase EC=2.5.1.31 ; Cell shape wall biogenesis/degradation Peptidoglycan synthesis Transferase

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
1

	
253

	
S=1147 I=90 E=1.42471e-130

	
Undecaprenyl pyrophosphate synthase EC=2.5.1.31 ; Cell cycle division shape wall biogenesis/degradation Peptidoglycan synthesis Transferase

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
1

	
253

	
S=862 I=63 E=4.98899e-96

	
Undecaprenyl pyrophosphate synthase EC=2.5.1.31 ; Cell cycle division shape wall biogenesis/degradation Peptidoglycan synthesis Transferase

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
1

	
253

	
S=859 I=63 E=9.67804e-96

	
Undecaprenyl pyrophosphate synthase EC=2.5.1.31 ; Cell cycle division shape wall biogenesis/degradation Peptidoglycan synthesis Transferase

	

    

    

         
        
prodomImg

    





    

        Iprscan
        IPR001441
	[G3DSA:3.40.1180.10]
	
1

	
246

	
	
Di-trans-poly-cis-decaprenylcistransferase-like

    





    

        Iprscan
        IPR001441
	[MF_01139]
	
8

	
238

	
	
Di-trans-poly-cis-decaprenylcistransferase-like

    





    

        Iprscan
        IPR001441
	[PTHR10291]
	
4

	
237

	
	
Di-trans-poly-cis-decaprenylcistransferase-like

    





    

        Iprscan
        IPR001441
	[PF01255]
	
17

	
237

	
	
Di-trans-poly-cis-decaprenylcistransferase-like

    





    

        Iprscan
        IPR001441
	[TIGR00055]
	
10

	
237

	
	
Di-trans-poly-cis-decaprenylcistransferase-like

    





    

        Iprscan
        IPR018520
	[PS01066]
	
183

	
200

	
	
Di-trans-poly-cis-decaprenylcistransferase-like, conserved site

    





    

        Iprscan
        
	[seg]
	
145

	
157

	
	
-

    





    

        
            
                
            
                
        
PD003461

        
12

	
232

	
S=467 I=46 E=3.7467e-49

    	
    





    

        Iprscan
        IPR001441
	[SSF64005]
	
6

	
233

	
	
Di-trans-poly-cis-decaprenylcistransferase-like

    




Show or not Suggestions
Suggest an annotation


Move your mouse over each field to get more informations


ID


DE


EC


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CC


CL

 
  Your email  
 
  Validation code (copy this one yyVVzTGa)  
 
     



Show or not Access unfiltered results






    

       
            
                pubmed
            
        
	    
            
Set of Uniprot with relevant PubMed cross-references ncbi-blastp

        		
 	    
            27 hits
        
    

    

        
            
                swiss-prot
            
        
	    
            
Swiss-Prot ncbi-blastp

        		
 	    
            205 hits
        
    

    
    
    

        
            
                XFF4834R
            
        
    	
            
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp

        		        
        
            1 hits
        
    

        
    

        
            
                hamap
            
        
	
            
HAMAP scan

        		        
        
            0 hits
        
    

    
    

	    
            
                Interpro Scan
            
            
	        
                
IprScan

            		        
            
                8 hits
            
    








Show or not Miscellaneous analyses




    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetLocalBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBphM1jH/XFF4834R_chr30800.xml_fasta", "https://iant.toulouse.inra.fr/bacteria/annotation/web/img/XFF4834R.png"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    
    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetNcbiBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBphM1jH/XFF4834R_chr30800.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetUniprotBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBphM1jH/XFF4834R_chr30800.xml_fasta"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetKeggBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBphM1jH/XFF4834R_chr30800.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    

    






dxr XFF4834R_chr30820




    

         
             
            XFF4834R_chr30810
            
XFF4834R_chr30810
            
        		


       
           
	   Cluster
	   
DrawMap
	   
        		
	
        
            XML file
        	


	    FASTA file
        		
	
	
             
            Extract
Sequence
            
        		
	
	
             
            Codon
Usage
            
        		
    
    
            
            Framed
            
     
  	



	
            OrthoMCL
            
    
  	
    
    
    

     


	
             
            XFF4834R_chr30830
            
XFF4834R_chr30830
            
        		

    





    

        ID
        dxr
    

    

        AC
        XFF4834R_chr30820
    

    

        LT
        XFF4834R_chr30820
    

    

        OR
        XFF4834R_chr from 3545286 to 3546476 on strand +
    

   

        DE
        probable 1-deoxy-D-xylulose 5-phosphate reductoisomerase protein 
  

   

        IP
        1-deoxy-D-xylulose 5-phosphate reductoisomerase; NAD(P)-binding domain
  
  
  
  

        CL
        1.5.3.19 Isoprenoid biosynthesis	GO:0008299 
    

  

        EC
        
    

    
    

        GO
        
            InterPro
Biological Process: isoprenoid biosynthetic process (GO:0008299)
Biological Process: oxidation reduction (GO:0055114)
Biological Process: metabolic process (GO:0008152)
Molecular Function: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity (GO:0030604)
Molecular Function: binding (GO:0005488)
Molecular Function: catalytic activity (GO:0003824)
Molecular Function: metal ion binding (GO:0046872)


            Curated

        		
    


  

        PM
        
    

  

        AN
        ai fait unblastP avec dxr coli car le blast n apparait pas chez NCBI en blastX existe aussi sous le nom ispC
    

  

        CC
        COG: [I] Lipid transport and metabolism; 
    

    

        CC
        MODEL: XFF4834R 
  
    
  

        CC
        STATUS: validated by jacques (20110713)
  

  
  


    

        MW
        40920.3 Da
    


    

        SQ
        396 aa
    

    

         
        
........10........20........30........40........50
         |         |         |         |         |
MAGSSPRQVAVFGATGSIGTSALDVIARHPERLRASVLSAGSKVDELLAL
CATHRPAHALIADATLYPALRDGLRALGLATQAHAGAEALDALASSDACD
TVVAAIVGAAGLPSTLAAARAGKRLLLANKESLVLAGELLTRTAAAAGAE
IIPIDSEHSAIFQCLRSCDASRGVRRVILTASGGPFRGRDRAALAAVTPA
QAVAHPKWSMGPKISVDSATLMNKGLEVIEAHHLFGLPGEQIDVLVHPQS
LVHSLVEFVDGSTLAQLGLPDMRTTLAVGLAWPERVDSGVAGLDLLTQGQ
LDFEAPDTAAFPCLRLAWDALRAGGTAPAILNAANEVAVSAFLQGKVGFL
AIPALVEHTLTTLQRHNADSLDTLLFADAQARQITERALAHHALHA

    






    

        
            
                X.species
            
                
        
NP_641750.1 lcl|dxr-XAC1415

        
1

	
396

	
S=1694 I=85 E=0

	
1-deoxy-D-xylulose 5-phosphate reductoisomerase

     	

   





    

        
            
                X.species
            
                
        
YP_363203.1 lcl|dxr-XCV1472

        
1

	
396

	
S=1659 I=84 E=0

	
1-deoxy-D-xylulose 5-phosphate reductoisomerase

     	

   





    

        
            
                X.species
            
                
        
NP_636741.1 lcl|dxr-XCC1367

        
1

	
396

	
S=1591 I=80 E=0

	
1-deoxy-D-xylulose 5-phosphate reductoisomerase

     	

   





    

        
            
                X.species
            
                
        
 lcl|dxr-XALc_2032

        
7

	
396

	
S=1272 I=67 E=6.77422e-147

	
probable 1-deoxy-d-xylulose 5-phosphate reductoisomerase protein

     	

   





    

        
                pubmed
        
        

        
4

	
393

	
S=820 I=46 E=1.49027e-90

	
1-deoxy-D-xylulose 5-phosphate reductoisomerase EC=1.1.1.267 ; Isoprene biosynthesis Metal-binding NADP Oxidoreductase

	
Pubmed 11034300

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
4

	
382

	
S=789 I=44 E=7.459e-87

	
1-deoxy-D-xylulose 5-phosphate reductoisomerase EC=1.1.1.267 ; Cobalt Isoprene biosynthesis Magnesium Manganese Metal-binding NADP Oxidoreductase

	
Pubmed 11004410

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
7

	
386

	
S=732 I=43 E=7.41553e-80

	
Putative plastid 1-deoxy-D-xylulose 5-phosphate reductoisomerase EC=1.1.1.267 ; Oxidoreductase Transit peptide

	
Pubmed 18799712

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
7

	
389

	
S=730 I=38 E=1.0883e-79

	
1-deoxy-D-xylulose 5-phosphate reductoisomerase EC=1.1.1.267 ; Isoprene biosynthesis Metal-binding NADP Oxidoreductase

	
Pubmed 18391199

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
7

	
386

	
S=729 I=43 E=1.59718e-79

	
Chloroplast 1-deoxy-D-xylulose 5-phosphate reductoisomerase EC=1.1.1.267 ; Oxidoreductase

	
Pubmed 18040591

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
1

	
396

	
S=1694 I=85 E=0

	
1-deoxy-D-xylulose 5-phosphate reductoisomerase EC=1.1.1.267 ; Isoprene biosynthesis Metal-binding NADP Oxidoreductase

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
1

	
396

	
S=1659 I=84 E=0

	
1-deoxy-D-xylulose 5-phosphate reductoisomerase EC=1.1.1.267 ; Isoprene biosynthesis Metal-binding NADP Oxidoreductase

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
1

	
396

	
S=1630 I=82 E=0

	
1-deoxy-D-xylulose 5-phosphate reductoisomerase EC=1.1.1.267 ; Isoprene biosynthesis Metal-binding NADP Oxidoreductase

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
1

	
396

	
S=1629 I=82 E=0

	
1-deoxy-D-xylulose 5-phosphate reductoisomerase EC=1.1.1.267 ; Isoprene biosynthesis Metal-binding NADP Oxidoreductase

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
1

	
396

	
S=1629 I=82 E=0

	
1-deoxy-D-xylulose 5-phosphate reductoisomerase EC=1.1.1.267 ; Isoprene biosynthesis Metal-binding NADP Oxidoreductase

	

    

    

         
        
prodomImg

    





    

        Iprscan
        IPR003821
	[MF_00183]
	
9

	
388

	
	
1-deoxy-D-xylulose 5-phosphate reductoisomerase

    





    

        Iprscan
        IPR003821
	[PIRSF006205]
	
6

	
395

	
	
1-deoxy-D-xylulose 5-phosphate reductoisomerase

    





    

        Iprscan
        IPR013512
	[PF02670]
	
9

	
137

	
	
1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal

    





    

        Iprscan
        IPR013644
	[PF08436]
	
151

	
235

	
	
1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal

    





    

        Iprscan
        IPR003821
	[TIGR00243]
	
7

	
394

	
	
1-deoxy-D-xylulose 5-phosphate reductoisomerase

    





    

        Iprscan
        
	[seg]
	
69

	
80

	
	
-

    





    

        Iprscan
        
	[seg]
	
83

	
98

	
	
-

    





    

        Iprscan
        
	[seg]
	
116

	
128

	
	
-

    





    

        Iprscan
        
	[seg]
	
192

	
204

	
	
-

    





    

        
            
                
            
                
        
PD833444

        
99

	
226

	
S=312 I=49 E=2.54359e-30

    	
    





    

        
            
                
            
                
        
PD580160

        
305

	
384

	
S=227 I=57 E=5.15602e-20

    	
    





    

        
            
                
            
                
        
PDA092I6

        
225

	
268

	
S=162 I=64 E=3.61371e-12

    	
    





    

        
            
                
            
                
        
PDA3A7T9

        
176

	
224

	
S=128 I=47 E=5.42585e-08

    	
    





    

        
            
                
            
                
        
PDA1B5R2

        
227

	
286

	
S=126 I=43 E=9.07552e-08

    	
    





    

        
            
                
            
                
        
PD010039

        
7

	
48

	
S=123 I=52 E=2.00652e-07

    	
    





    

        
            
                
            
                
        
PDA0W2U5

        
267

	
304

	
S=118 I=61 E=8.45701e-07

    	
    





    

        
            
                
            
                
        
PDA1L398

        
48

	
68

	
S=104 I=95 E=3.6241e-05

    	
    





    

        Iprscan
        
	[SSF55347]
	
131

	
270

	
	
-

    





    

        Iprscan
        IPR016040
	[SSF51735]
	
5

	
155

	
	
NAD(P)-binding domain

    





    

        Iprscan
        
	[SSF69055]
	
297

	
391

	
	
-

    




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Show or not Access unfiltered results






    

       
            
                pubmed
            
        
	    
            
Set of Uniprot with relevant PubMed cross-references ncbi-blastp

        		
 	    
            65 hits
        
    

    

        
            
                swiss-prot
            
        
	    
            
Swiss-Prot ncbi-blastp

        		
 	    
            0 hits
        
    

    
    
    

        
            
                XFF4834R
            
        
    	
            
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp

        		        
        
            0 hits
        
    

        
    

        
            
                hamap
            
        
	
            
HAMAP scan

        		        
        
            0 hits
        
    

    
    

	    
            
                Interpro Scan
            
            
	        
                
IprScan

            		        
            
                12 hits
            
    








Show or not Miscellaneous analyses




    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetLocalBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBphM1jH/XFF4834R_chr30820.xml_fasta", "https://iant.toulouse.inra.fr/bacteria/annotation/web/img/XFF4834R.png"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    
    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetNcbiBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBphM1jH/XFF4834R_chr30820.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetUniprotBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBphM1jH/XFF4834R_chr30820.xml_fasta"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetKeggBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBphM1jH/XFF4834R_chr30820.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    

    






ispH XFF4834R_chr32830




    

         
             
            XFF4834R_chr32820
            
XFF4834R_chr32820
            
        		


       
           
	   Cluster
	   
DrawMap
	   
        		
	
        
            XML file
        	


	    FASTA file
        		
	
	
             
            Extract
Sequence
            
        		
	
	
             
            Codon
Usage
            
        		
    
    
            
            Framed
            
     
  	



	
            OrthoMCL
            
    
  	
    
    
    

     


	
             
            XFF4834R_chr32840
            
XFF4834R_chr32840
            
        		

    





    

        ID
        ispH
    

    

        AC
        XFF4834R_chr32830
    

    

        LT
        XFF4834R_chr32830
    

    

        OR
        XFF4834R_chr from 3780611 to 3781561 on strand -
    

   

        DE
        probable 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase, 4Fe-4S protein
  

   

        IP
        LytB protein
  
  
  
  

        CL
        1.5.3.19 Isoprenoid biosynthesis	GO:0008299 
    

  

        EC
        
    

    
    

        GO
        
            InterPro
Biological Process: oxidation reduction (GO:0055114)
mevalonate-independent pathway (GO:0019288)


            Curated

        		
    


  

        PM
        
    

  

        AN
        lytB = ispH
    

  

        CC
        COG: [IM] Lipid transport and metabolism;Cell wall/membrane/envelope biogenesis; 
    

    

        CC
        MODEL: XFF4834R 
  
    
  

        CC
        STATUS: curated by brin (20100823)
  

  
  


    

        MW
        34718 Da
    


    

        SQ
        316 aa
    

    

         
        
........10........20........30........40........50
         |         |         |         |         |
MDVLLANPRGFCAGVDRAIEIVKRAIETLGAPIYVRHEVVHNRFVVDDLK
QRGAIFVEELDEVPDDATVIFSAHGVSQAVRQEAERRGLKVFDATCPLVT
KVHFEVARHCRAGRDVVLIGHAGHPEVEGTMGQWSRERGVGTIYLVEDIE
QVATLDVRQPDNLAYTTQTTLSVDDTMGIIEALRARYPAMQGPRHDDICY
ATQNRQDAVRDLARQCDLVLVVGSPNSSNSNRLSELARRDGVESYLIDNA
SEIDPAWIVGKQHIGLTAGASAPQVLVDGVLERLRELGAAGVSELEGEPE
SMVFALPKELRLRLVS

    






    

        
            
                X.species
            
                
        
NP_641592.1 lcl|ispH-XAC1256

        
1

	
316

	
S=1651 I=100 E=0

	
4-hydroxy-3-methylbut-2-enyl diphosphate reductase

     	

   





    

        
            
                X.species
            
                
        
YP_363023.2 lcl|ispH-XCV1292

        
1

	
316

	
S=1641 I=99 E=0

	
4-hydroxy-3-methylbut-2-enyl diphosphate reductase

     	

   





    

        
            
                X.species
            
                
        
NP_636532.1 lcl|ispH-XCC1157

        
1

	
316

	
S=1594 I=97 E=0

	
4-hydroxy-3-methylbut-2-enyl diphosphate reductase

     	

   





    

        
            
                X.species
            
                
        
 lcl|ispH-XALc_0924

        
1

	
315

	
S=1528 I=92 E=4.7237e-178

	
probable 4-hydroxy-3-methylbut-2-enyl diphosphate reductase protein

     	

   





    

        
                pubmed
        
        

        
1

	
314

	
S=1137 I=66 E=4.16836e-129

	
4-hydroxy-3-methylbut-2-enyl diphosphate reductase EC=1.17.1.2 ; 3Fe-4S Iron Iron-sulfur Isoprene biosynthesis Metal-binding NADP Oxidoreductase

	
Pubmed 10763755

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
1

	
313

	
S=1111 I=69 E=5.89302e-126

	
4-hydroxy-3-methylbut-2-enyl diphosphate reductase EC=1.17.1.2 ; 3Fe-4S Iron Iron-sulfur Isoprene biosynthesis Metal-binding NADP Oxidoreductase

	
Pubmed 14983043

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
2

	
310

	
S=1043 I=63 E=1.19655e-117

	
4-hydroxy-3-methylbut-2-enyl diphosphate reductase EC=1.17.1.2 ; 3Fe-4S Iron Iron-sulfur Isoprene biosynthesis Metal-binding NADP Oxidoreductase

	
Pubmed 18065615

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
1

	
312

	
S=1023 I=63 E=2.83184e-115

	
4-hydroxy-3-methylbut-2-enyl diphosphate reductase EC=1.17.1.2 ; 3Fe-4S Iron Iron-sulfur Isoprene biosynthesis Metal-binding NADP Oxidoreductase

	
Pubmed 11818558,2011499

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
9

	
288

	
S=969 I=68 E=1.07898e-108

	
LytB

	
Pubmed 16318732

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
1

	
316

	
S=1651 I=100 E=0

	
4-hydroxy-3-methylbut-2-enyl diphosphate reductase EC=1.17.1.2 ; 3Fe-4S Iron Iron-sulfur Isoprene biosynthesis Metal-binding NADP Oxidoreductase

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
1

	
316

	
S=1640 I=99 E=0

	
4-hydroxy-3-methylbut-2-enyl diphosphate reductase EC=1.17.1.2 ; 3Fe-4S Iron Iron-sulfur Isoprene biosynthesis Metal-binding NADP Oxidoreductase

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
1

	
315

	
S=1614 I=98 E=0

	
4-hydroxy-3-methylbut-2-enyl diphosphate reductase EC=1.17.1.2 ; 3Fe-4S Iron Iron-sulfur Isoprene biosynthesis Metal-binding NADP Oxidoreductase