8 hits
XFF4834R_chr09540 | ispE | XFF4834R_chr09540 | 4-diphosphocytidyl-2-C-methylerythritol kinase |
XFF4834R_chr18700 | ispA | XFF4834R_chr18700 | probable geranyltranstransferase |
XFF4834R_chr19280 | ispG | XFF4834R_chr19280 | 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase |
XFF4834R_chr27890 | ispF | XFF4834R_chr27890 | probable 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase |
XFF4834R_chr27900 | ispD | XFF4834R_chr27900 | probable 4-diphosphocytidyl-2C-methyl-D-erythritol synthase |
XFF4834R_chr30800 | ispU | XFF4834R_chr30800 | probable secreted undecaprenyl pyrophosphate synthase protein |
XFF4834R_chr30820 | dxr | XFF4834R_chr30820 | probable 1-deoxy-D-xylulose 5-phosphate reductoisomerase protein |
XFF4834R_chr32830 | ispH | XFF4834R_chr32830 | probable 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase, 4Fe-4S protein |
![]() XFF4834R_chr09530 |
![]() DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
![]() |
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![]() XFF4834R_chr09550 |
ID | ispE |
AC | XFF4834R_chr09540 |
LT | XFF4834R_chr09540 |
OR | XFF4834R_chr from 1095939 to 1096826 on strand + |
DE | 4-diphosphocytidyl-2-C-methylerythritol kinase |
IP | 4-diphosphocytidyl-2C-methyl-D-erythritol kinase |
CL | 1.5.3.19 Isoprenoid biosynthesis GO:0008299 |
EC | |
GO |
InterPro Biological Process: phosphorylation (GO:0016310) Biological Process: terpenoid biosynthetic process (GO:0016114) Molecular Function: kinase activity (GO:0016301) Molecular Function: ATP binding (GO:0005524) Molecular Function: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity (GO:0050515) Curated |
PM | |
AN | la publi sur le fonctionnel est avec l ancien nom du gene YchB |
CC | COG: [I] Lipid transport and metabolism; |
CC | MODEL: XFF4834R |
CC | STATUS: curated by brin (20100723) |
MW | 31086 Da |
SQ | 295 aa |
........10........20........30........40........50 |
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NP_641300.1 lcl|ipk-XAC0948 |
1 |
295 |
S=1214 I=83 E=4.39664e-140 |
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase |
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YP_362710.1 lcl|ispE-XCV0979 |
1 |
295 |
S=1158 I=80 E=2.39504e-133 |
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase |
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NP_636262.1 lcl|ipk-XCC0871 |
1 |
295 |
S=1074 I=73 E=3.97274e-123 |
4-diphosphocytidyl-2-C-methyl-D-erythritolkinase |
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6 |
289 |
S=861 I=63 E=2.64883e-97 |
probable 4-diphosphocytidyl-2-c-methyl-d-erythritol kinase protein |
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14 |
295 |
S=746 I=59 E=1.01503e-81 |
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase EC=2.7.1.148 ; ATP-binding Isoprene biosynthesis Nucleotide-binding Transferase |
Pubmed 19218412 |
|
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15 |
286 |
S=499 I=41 E=7.55469e-52 |
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase EC=2.7.1.148 ; ATP-binding Isoprene biosynthesis Nucleotide-binding Transferase |
||
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15 |
286 |
S=491 I=41 E=7.48285e-51 |
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase EC=2.7.1.148 ; ATP-binding Isoprene biosynthesis Nucleotide-binding Transferase |
Pubmed 7679718 |
|
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15 |
286 |
S=490 I=41 E=8.83102e-51 |
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase EC=2.7.1.148 ; ATP-binding Isoprene biosynthesis Nucleotide-binding Transferase |
Pubmed 12878729 |
|
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18 |
286 |
S=467 I=41 E=6.05485e-48 |
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase EC=2.7.1.148 ; ATP-binding Isoprene biosynthesis Nucleotide-binding Transferase |
Pubmed 7883699 |
|
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1 |
295 |
S=1214 I=83 E=1.2337e-138 |
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase EC=2.7.1.148 ; ATP-binding Isoprene biosynthesis Nucleotide-binding Transferase |
||
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1 |
295 |
S=1158 I=80 E=6.72049e-132 |
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase EC=2.7.1.148 ; ATP-binding Isoprene biosynthesis Nucleotide-binding Transferase |
||
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1 |
295 |
S=1125 I=79 E=7.90485e-128 |
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase EC=2.7.1.148 ; ATP-binding Isoprene biosynthesis Nucleotide-binding Transferase |
||
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1 |
295 |
S=1125 I=79 E=7.90485e-128 |
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase EC=2.7.1.148 ; ATP-binding Isoprene biosynthesis Nucleotide-binding Transferase |
||
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1 |
295 |
S=1074 I=73 E=1.11475e-121 |
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase EC=2.7.1.148 ; ATP-binding Isoprene biosynthesis Nucleotide-binding Transferase |
||
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IPR014721 [G3DSA:3.30.230.10] | 15 |
172 |
Ribosomal protein S5 domain 2-type fold, subgroup |
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IPR004424 [MF_00061] | 15 |
283 |
4-diphosphocytidyl-2C-methyl-D-erythritol kinase |
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IPR004424 [PIRSF010376] | 13 |
289 |
4-diphosphocytidyl-2C-methyl-D-erythritol kinase |
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IPR004424 [PTHR20861:SF2] | 58 |
269 |
4-diphosphocytidyl-2C-methyl-D-erythritol kinase |
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[PTHR20861] | 58 |
269 |
- |
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IPR006204 [PF00288] | 99 |
155 |
GHMP kinase |
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IPR013750 [PF08544] | 213 |
269 |
GHMP kinase, C-terminal |
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IPR004424 [TIGR00154] | 15 |
292 |
4-diphosphocytidyl-2C-methyl-D-erythritol kinase |
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[seg] | 108 |
114 |
- |
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[seg] | 122 |
147 |
- |
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[seg] | 260 |
269 |
- |
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19 |
87 |
S=190 I=55 E=1.46354e-15 |
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178 |
282 |
S=150 I=35 E=1.22422e-10 |
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52 |
85 |
S=126 I=74 E=8.4672e-08 |
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270 |
295 |
S=106 I=81 E=2.18647e-05 |
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IPR020568 [SSF54211] | 13 |
170 |
Ribosomal protein S5 domain 2-type fold |
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[SSF55060] | 171 |
291 |
- |
Access unfiltered results
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Set of Uniprot with relevant PubMed cross-references ncbi-blastp |
27 hits |
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Swiss-Prot ncbi-blastp |
0 hits |
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Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp |
0 hits |
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HAMAP scan |
0 hits |
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IprScan |
13 hits |
Miscellaneous analyses
![]() XFF4834R_chr18690 |
![]() DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
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![]() XFF4834R_chr18710 |
ID | ispA |
AC | XFF4834R_chr18700 |
LT | XFF4834R_chr18700 |
OR | XFF4834R_chr from 2141338 to 2142213 on strand - |
DE | probable geranyltranstransferase |
IP | Polyprenyl synthetase; Terpenoid synthase |
CL | 1.5.3.19 Isoprenoid biosynthesis GO:0008299 |
EC | |
GO |
InterPro Biological Process: isoprenoid biosynthetic process (GO:0008299) Curated |
PM | |
AN | |
CC | COG: [H] Coenzyme transport and metabolism; |
CC | MODEL: XFF4834R |
CC | STATUS: curated by pieretti (20100408) |
MW | 30500.3 Da |
SQ | 291 aa |
........10........20........30........40........50 |
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XFF4834R_chr17330 lcl|ispB-XFF4834R_chr17330 |
37 |
260 |
S=267 I=34 E=6.31643e-26 |
octaprenyl diphosphate synthase |
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XFF4834R_chr17330 lcl|ispB-XFF4834R_chr17330 |
37 |
260 |
S=267 I=34 E=6.31643e-26 |
octaprenyl diphosphate synthase |
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NP_643071.1 lcl|ispA-XAC2762 |
1 |
291 |
S=1249 I=93 E=2.373e-144 |
farnesyl-diphosphate synthase |
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YP_364647.1 lcl|ispA-XCV2916 |
1 |
291 |
S=1238 I=92 E=5.1515e-143 |
geranyltranstransferase |
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NP_637948.1 lcl|ispA-XCC2600 |
1 |
291 |
S=1182 I=82 E=3.19833e-136 |
farnesyl-diphosphate synthase |
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3 |
291 |
S=949 I=70 E=4.95968e-108 |
putative geranylgeranyl pyrophosphate synthase protein |
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YP_364781.1 lcl|ispB-XCV3050 |
37 |
251 |
S=269 I=35 E=1.42618e-25 |
octaprenyl-diphosphate synthase |
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NP_643215.1 lcl|ispB-XAC2906 |
37 |
251 |
S=268 I=35 E=1.80472e-25 |
octaprenyl-diphosphate synthase |
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37 |
246 |
S=266 I=34 E=2.99244e-25 |
putative octaprenyl-diphosphate synthase protein |
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NP_638084.1 lcl|ispB-XCC2736 |
37 |
248 |
S=256 I=35 E=5.3624e-24 |
octaprenyl-diphosphate synthase |
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6 |
289 |
S=659 I=50 E=2.58428e-71 |
Farnesyl diphosphate synthase (SelFPS) ; Isoprene biosynthesis Transferase |
Pubmed 10412909 |
|
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6 |
255 |
S=508 I=43 E=6.24915e-53 |
Geranyl diphosphate synthase large subunit Geranyl pyrophosphate synthase large subunit Gpp synthase large subunit ; Isoprene biosynthesis Transferase |
Pubmed 10557273 |
|
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6 |
272 |
S=506 I=44 E=9.25153e-53 |
Geranylgeranyl diphosphate synthase EC=2.5.1.29 ; Isoprene biosynthesis Transferase |
Pubmed 17634749 |
|
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12 |
272 |
S=504 I=42 E=1.58846e-52 |
Geranylgeranyl pyrophosphate synthase 1 ; Isoprene biosynthesis Transferase |
Pubmed 16786318 |
|
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5 |
283 |
S=501 I=41 E=4.52228e-52 |
Geranylgeranyl diphosphate synthase ; Isoprene biosynthesis Transferase |
Pubmed 15352294 |
|
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6 |
261 |
S=500 I=43 E=4.72378e-52 |
Geranylgeranyl pyrophosphate synthetase, chloroplastic EC=2.5.1.1 EC=2.5.1.10 EC=2.5.1.29 ; Carotenoid biosynthesis Isoprene Multifunctional enzym |
||
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35 |
261 |
S=500 I=53 E=4.97747e-52 |
Geranyltranstransferase EC=2.5.1.10 ; Cytoplasm Isoprene biosynthesis |
Pubmed 2089044 |
|
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22 |
289 |
S=498 I=48 E=8.472e-52 |
Farnesyl diphosphate synthase Polyprenyl synthetase ; Isoprene biosynthesis Transferase |
Pubmed 12189420 |
|
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12 |
273 |
S=498 I=42 E=1.02633e-51 |
Putative geranylgeranyl pyrophosphate synthase ; Isoprene biosynthesis Transferase |
Pubmed 17186217 |
|
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6 |
274 |
S=497 I=41 E=1.25423e-51 |
Geranylgeranyl diphosphate synthase ; Isoprene biosynthesis Transferase |
Pubmed 9826430 |
|
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12 |
261 |
S=531 I=49 E=7.16052e-56 |
Geranyltranstransferase EC=2.5.1.10 ; Cytoplasm Isoprene biosynthesis |
||
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6 |
261 |
S=500 I=43 E=3.25618e-52 |
Geranylgeranyl pyrophosphate synthetase, chloroplastic EC=2.5.1.1 EC=2.5.1.10 EC=2.5.1.29 ; Carotenoid biosynthesis Isoprene Multifunctional enzym |
||
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35 |
261 |
S=500 I=53 E=3.43105e-52 |
Geranyltranstransferase EC=2.5.1.10 ; Cytoplasm Isoprene biosynthesis |
||
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28 |
255 |
S=496 I=46 E=1.00269e-51 |
Geranylgeranyl pyrophosphate synthetase, chloroplastic EC=2.5.1.1 EC=2.5.1.10 EC=2.5.1.29 ; Carotenoid biosynthesis Isoprene Multifunctional enzyme Plastid Transfe |
||
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17 |
289 |
S=496 I=40 E=1.26883e-51 |
Geranyltranstransferase EC=2.5.1.10 ; Cytoplasm Isoprene biosynthesis |
||
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6 |
248 |
S=406 I=43 E=1.0632e-41 |
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199 |
291 |
S=169 I=43 E=5.34963e-13 |
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267 |
291 |
S=135 I=100 E=7.17157e-09 |
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255 |
291 |
S=134 I=70 E=8.46365e-09 |
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166 |
248 |
S=132 I=37 E=1.90416e-08 |
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40 |
241 |
S=125 I=28 E=1.15747e-07 |
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4 |
48 |
S=121 I=52 E=3.95737e-07 |
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216 |
255 |
S=118 I=53 E=7.94926e-07 |
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71 |
104 |
S=102 I=59 E=6.49399e-05 |
Access unfiltered results
Miscellaneous analyses
![]() XFF4834R_chr19270 |
![]() DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
![]() |
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![]() XFF4834R_chr_4659 |
ID | ispG |
AC | XFF4834R_chr19280 |
LT | XFF4834R_chr19280 |
OR | XFF4834R_chr from 2207927 to 2209192 on strand + |
DE | 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase |
IP | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type |
CL | 1.5.3.19 Isoprenoid biosynthesis GO:0008299 |
EC | |
GO |
InterPro Biological Process: oxidation reduction (GO:0055114) Biological Process: isoprenoid biosynthetic process (GO:0008299) Biological Process: terpenoid biosynthetic process (GO:0016114) Biological Process: cellular metabolic process (GO:0044237) Molecular Function: iron ion binding (GO:0005506) Molecular Function: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity (GO:0046429) Curated |
PM | |
AN | s appelle aussi gcpE |
CC | COG: [I] Lipid transport and metabolism; |
CC | MODEL: XFF4834R |
CC | STATUS: curated by brin (20100812) |
MW | 45186.2 Da |
SQ | 421 aa |
........10........20........30........40........50 |
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YP_363560.1 lcl|ispG-XCV1829 |
1 |
421 |
S=2083 I=94 E=0 |
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase |
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NP_642126.1 lcl|ispG-XAC1799 |
1 |
421 |
S=2078 I=93 E=0 |
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase |
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NP_637147.1 lcl|ispG-XCC1781 |
1 |
421 |
S=2013 I=89 E=0 |
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase |
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1 |
421 |
S=1838 I=82 E=0 |
probable 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase) protein |
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19 |
416 |
S=1144 I=54 E=7.88945e-130 |
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase EC=1.17.7.1 ; 4Fe-4S Iron Iron-sulfur Isoprene biosynthesis Metal-binding Oxidoreductase |
Pubmed 12482607 |
|
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13 |
416 |
S=1000 I=48 E=2.41617e-112 |
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase EC=1.17.7.1 ; 4Fe-4S Iron Iron-sulfur Isoprene biosynthesis Metal-binding Oxidoreductase |
Pubmed 18550617 |
|
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20 |
416 |
S=997 I=48 E=5.06967e-112 |
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase EC=1.17.7.1 ; 4Fe-4S Iron Iron-sulfur Isoprene biosynthesis Metal-binding Oxidoreductase |
Pubmed 15618402 |
|
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19 |
416 |
S=989 I=48 E=5.29115e-111 |
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase EC=1.17.7.1 ; 4Fe-4S Iron Iron-sulfur Isoprene biosynthesis Metal-binding Oxidoreductase |
Pubmed 15780005 |
|
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19 |
416 |
S=988 I=48 E=7.17923e-111 |
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase EC=1.17.7.1 ; 4Fe-4S Iron Iron-sulfur Isoprene biosynthesis Metal-binding Oxidoreductase |
Pubmed 19307581 |
|
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1 |
421 |
S=2083 I=94 E=0 |
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase EC=1.17.7.1 ; 4Fe-4S Iron Iron-sulfur Isoprene biosynthesis Metal-binding Oxidoreductase |
||
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1 |
421 |
S=2078 I=93 E=0 |
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase EC=1.17.7.1 ; 4Fe-4S Iron Iron-sulfur Isoprene biosynthesis Metal-binding Oxidoreductase |
||
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1 |
421 |
S=2014 I=90 E=0 |
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase EC=1.17.7.1 ; 4Fe-4S Iron Iron-sulfur Isoprene biosynthesis Metal-binding Oxidoreductase |
||
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1 |
421 |
S=2013 I=89 E=0 |
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase EC=1.17.7.1 ; 4Fe-4S Iron Iron-sulfur Isoprene biosynthesis Metal-binding Oxidoreductase |
||
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1 |
421 |
S=2013 I=89 E=0 |
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase EC=1.17.7.1 ; 4Fe-4S Iron Iron-sulfur Isoprene biosynthesis Metal-binding Oxidoreductase |
||
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IPR004588 [MF_00159] | 17 |
411 |
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type |
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IPR016425 [PIRSF004640] | 15 |
420 |
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial |
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IPR004588 [PF04551] | 22 |
411 |
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type |
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IPR004588 [TIGR00612] | 19 |
409 |
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type |
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[seg] | 109 |
121 |
- |
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[seg] | 255 |
265 |
- |
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54 |
371 |
S=397 I=34 E=1.1681e-40 |
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374 |
416 |
S=166 I=70 E=1.44398e-12 |
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19 |
51 |
S=111 I=64 E=6.66515e-06 |
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IPR011005 [SSF51717] | 20 |
299 |
Dihydropteroate synthase-like |
Access unfiltered results
Miscellaneous analyses
![]() XFF4834R_chr27880 |
![]() DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
![]() |
![]() |
![]() XFF4834R_chr27900 |
ID | ispF |
AC | XFF4834R_chr27890 |
LT | XFF4834R_chr27890 |
OR | XFF4834R_chr from 3217021 to 3217521 on strand - |
DE | probable 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase |
IP | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core |
CL | 1.5.3.19 Isoprenoid biosynthesis GO:0008299 |
EC | |
GO |
InterPro 4-cyclodiphosphate synthase activity (GO:0008685) Biological Process: terpenoid biosynthetic process (GO:0016114) Curated |
PM | |
AN | |
CC | COG: [I] Lipid transport and metabolism; |
CC | MODEL: XFF4834R |
CC | STATUS: validated by jacques (20110713) |
MW | 17518.9 Da |
SQ | 166 aa |
........10........20........30........40........50 |
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NP_642053.1 lcl|ispF-XAC1722 |
1 |
166 |
S=829 I=98 E=9.49487e-94 |
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase |
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YP_363486.1 lcl|ispF-XCV1755 |
1 |
166 |
S=828 I=97 E=1.11083e-93 |
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase |
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NP_637073.1 lcl|ispF-XCC1703 |
1 |
163 |
S=774 I=91 E=4.3069e-87 |
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase |
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5 |
158 |
S=667 I=84 E=4.11438e-74 |
probable 2-c-methyl-d-erythritol 2,4-cyclodiphosphate synthase (mecdp-synthase) protein |
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1 |
158 |
S=485 I=61 E=1.41224e-50 |
Bifunctional enzyme ispD/ispF EC=2.7.7.60 EC=4.6.1.12 ; Isoprene biosynthesis Lyase Metal-binding Multifunctional Nucleotidyltransferase |
Pubmed 8355615 |
|
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8 |
154 |
S=471 I=59 E=7.79291e-49 |
Bifunctional enzyme ispD/ispF EC=2.7.7.60 EC=4.6.1.12 ; Isoprene biosynthesis Lyase Metal-binding Multifunctional Nucleotidyltransferase |
Pubmed 10419959 |
|
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5 |
160 |
S=430 I=51 E=6.69138e-44 |
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase EC=4.6.1.12 ; Isoprene biosynthesis Lyase Metal-binding |
||
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5 |
157 |
S=427 I=50 E=1.68611e-43 |
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase EC=4.6.1.12 ; Isoprene biosynthesis Lyase Metal-binding |
Pubmed 16707693 |
|
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5 |
166 |
S=418 I=47 E=2.15053e-42 |
Bifunctional enzyme ispD/ispF EC=2.7.7.60 EC=4.6.1.12 ; Isoprene biosynthesis Lyase Metal-binding Multifunctional Nucleotidyltransferase |
Pubmed 15780005 |
|
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1 |
166 |
S=829 I=98 E=2.38784e-92 |
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase EC=4.6.1.12 ; Isoprene biosynthesis Lyase Metal-binding |
||
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1 |
166 |
S=828 I=97 E=2.79359e-92 |
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase EC=4.6.1.12 ; Isoprene biosynthesis Lyase Metal-binding |
||
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1 |
163 |
S=808 I=97 E=7.405e-90 |
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase EC=4.6.1.12 ; Isoprene biosynthesis Lyase Metal-binding |
||
![]() |
1 |
163 |
S=808 I=97 E=7.405e-90 |
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase EC=4.6.1.12 ; Isoprene biosynthesis Lyase Metal-binding |
||
![]() |
1 |
163 |
S=808 I=97 E=7.405e-90 |
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase EC=4.6.1.12 ; Isoprene biosynthesis Lyase Metal-binding |
||
![]() |
IPR003526 [G3DSA:3.30.1330.50] | 5 |
156 |
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core |
![]() |
IPR003526 [MF_00107] | 5 |
160 |
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core |
![]() |
IPR003526 [PF02542] | 5 |
159 |
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core |
![]() |
IPR003526 [TIGR00151] | 6 |
160 |
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core |
![]() |
IPR020555 [PS01350] | 39 |
54 |
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, conserved site |
![]() |
11 |
153 |
S=460 I=60 E=2.87179e-48 |
![]() |
IPR003526 [SSF69765] | 5 |
159 |
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core |
Access unfiltered results
Miscellaneous analyses
![]() XFF4834R_chr27890 |
![]() DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
![]() |
![]() |
![]() XFF4834R_chr27910 |
ID | ispD |
AC | XFF4834R_chr27900 |
LT | XFF4834R_chr27900 |
OR | XFF4834R_chr from 3217525 to 3218304 on strand - |
DE | probable 4-diphosphocytidyl-2C-methyl-D-erythritol synthase |
IP | 4-diphosphocytidyl-2C-methyl-D-erythritol synthase |
CL | 1.5.3.19 Isoprenoid biosynthesis GO:0008299 |
EC | |
GO |
InterPro Biological Process: isoprenoid biosynthetic process (GO:0008299) Molecular Function: catalytic activity (GO:0003824) Curated |
PM | |
AN | |
CC | COG: [I] Lipid transport and metabolism; |
CC | MODEL: XFF4834R |
CC | STATUS: curated by brin (20100813) |
MW | 27181.7 Da |
SQ | 259 aa |
........10........20........30........40........50 |
![]() |
NP_642052.1 lcl|ispD-XAC1721 |
1 |
256 |
S=1116 I=91 E=2.92637e-128 |
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase |
![]() |
YP_363485.1 lcl|ispD-XCV1754 |
1 |
256 |
S=1049 I=88 E=3.6465e-120 |
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase |
![]() |
NP_637072.1 lcl|ispD-XCC1702 |
1 |
259 |
S=973 I=80 E=5.40495e-111 |
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase |
![]() |
13 |
234 |
S=754 I=73 E=2.1906e-84 |
probable 2-c-methyl-d-erythritol 4-phosphate cytidylyltransferase (4-diphosphocytidyl-2c-methyl-d-erythritol synthase) (mep cytidylyltransferase) (mct) protein |
![]() |
5 |
227 |
S=382 I=44 E=1.05251e-37 |
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase EC=2.7.7.60 ; Cobalt Isoprene biosynthesis Magnesium Manganese Nucleotidyltransferase |
Pubmed 10518523 |
|
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5 |
220 |
S=242 I=32 E=8.12899e-21 |
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase ; Nucleotidyltransferase |
Pubmed 16828818 |
|
![]() |
7 |
220 |
S=241 I=33 E=1.33619e-20 |
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase EC=2.7.7.60 ; Isoprene biosynthesis Nucleotidyltransferase |
Pubmed 18043661 |
|
![]() |
4 |
220 |
S=240 I=31 E=1.47068e-20 |
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase EC=2.7.7.60 ; Nucleotidyltransferase |
Pubmed 18997428 |
|
![]() |
4 |
220 |
S=238 I=31 E=3.14011e-20 |
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase EC=2.7.7.60 ; Nucleotidyltransferase |
Pubmed 18997428 |
|
![]() |
1 |
256 |
S=1116 I=91 E=8.07228e-127 |
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase EC=2.7.7.60 ; Isoprene biosynthesis Nucleotidyltransferase |
||
![]() |
1 |
256 |
S=1049 I=88 E=1.00587e-118 |
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase EC=2.7.7.60 ; Isoprene biosynthesis Nucleotidyltransferase |
||
![]() |
3 |
230 |
S=982 I=91 E=1.47923e-110 |
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase EC=2.7.7.60 ; Isoprene biosynthesis Nucleotidyltransferase |
||
![]() |
3 |
230 |
S=981 I=91 E=1.57232e-110 |
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase EC=2.7.7.60 ; Isoprene biosynthesis Nucleotidyltransferase |
||
![]() |
3 |
230 |
S=981 I=91 E=1.57232e-110 |
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase EC=2.7.7.60 ; Isoprene biosynthesis Nucleotidyltransferase |
||
![]() |
[G3DSA:3.90.550.10] | 5 |
236 |
- |
![]() |
IPR001228 [MF_00108] | 4 |
230 |
4-diphosphocytidyl-2C-methyl-D-erythritol synthase |
![]() |
IPR001228 [PF01128] | 6 |
225 |
4-diphosphocytidyl-2C-methyl-D-erythritol synthase |
![]() |
IPR001228 [TIGR00453] | 6 |
227 |
4-diphosphocytidyl-2C-methyl-D-erythritol synthase |
![]() |
IPR018294 [PS01295] | 103 |
110 |
4-diphosphocytidyl-2C-methyl-D-erythritol synthase, conserved site |
![]() |
[seg] | 34 |
49 |
- |
![]() |
157 |
221 |
S=145 I=50 E=4.35026e-10 |
![]() |
225 |
256 |
S=143 I=88 E=8.07899e-10 |
![]() |
124 |
150 |
S=128 I=100 E=5.12547e-08 |
![]() |
70 |
143 |
S=126 I=46 E=9.77091e-08 |
![]() |
50 |
75 |
S=114 I=85 E=2.73137e-06 |
![]() |
50 |
69 |
S=103 I=100 E=5.67654e-05 |
![]() |
[SSF53448] | 1 |
229 |
- |
Access unfiltered results
Miscellaneous analyses
![]() XFF4834R_chr30790 |
![]() DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
![]() |
![]() |
![]() XFF4834R_chr30810 |
ID | ispU |
AC | XFF4834R_chr30800 |
LT | XFF4834R_chr30800 |
OR | XFF4834R_chr from 3543698 to 3544459 on strand + |
DE | probable secreted undecaprenyl pyrophosphate synthase protein |
IP | Di-trans-poly-cis-decaprenylcistransferase-like |
CL | 1.5.3.19 Isoprenoid biosynthesis GO:0008299 |
EC | |
GO |
InterPro transferring alkyl or aryl (other than methyl) groups (GO:0016765) Curated |
PM | |
AN | changement de start moins 5 aa |
CC | COG: [I] Lipid transport and metabolism; |
CC | MODEL: XFF4834R |
CC | STATUS: curated by brin (20100816) |
MW | 27997.3 Da |
SQ | 253 aa |
........10........20........30........40........50 |
![]() |
NP_641752.1 lcl|uppS-XAC1417 |
1 |
253 |
S=1176 I=94 E=1.54673e-135 |
undecaprenyl pyrophosphate synthetase |
![]() |
YP_363205.1 lcl|uppS-XCV1474 |
1 |
253 |
S=1165 I=93 E=3.50738e-134 |
undecaprenyl pyrophosphate synthetase |
![]() |
NP_636743.1 lcl|uppS-XCC1369 |
1 |
253 |
S=1147 I=90 E=5.18383e-132 |
undecaprenyl pyrophosphate synthetase |
![]() |
1 |
250 |
S=951 I=77 E=2.64216e-108 |
probable undecaprenyl pyrophosphate synthase protein |
![]() |
10 |
237 |
S=596 I=49 E=1.11112e-63 |
Undecaprenyl pyrophosphate synthase EC=2.5.1.31 ; Cell cycle division shape wall biogenesis/degradation Peptidoglycan synthesis Transferase |
Pubmed 12446909 |
|
![]() |
7 |
237 |
S=548 I=46 E=8.07735e-58 |
Undecaprenyl pyrophosphate synthase EC=2.5.1.31 ; Cell cycle division shape wall biogenesis/degradation Peptidoglycan synthesis Transferase |
Pubmed 12955602 |
|
![]() |
10 |
237 |
S=540 I=46 E=6.48999e-57 |
Undecaprenyl pyrophosphate synthase EC=2.5.1.31 ; Transferase |
Pubmed 18459973 |
|
![]() |
11 |
237 |
S=518 I=48 E=3.60961e-54 |
Undecaprenyl-diphosphate synthase EC=2.5.1.31 ; Transferase |
Pubmed 12384294 |
|
![]() |
6 |
237 |
S=493 I=40 E=3.2429e-51 |
Undecaprenyl pyrophosphate synthase EC=2.5.1.31 ; Cell cycle division shape wall biogenesis/degradation Peptidoglycan synthesis Transferase |
||
![]() |
1 |
253 |
S=1176 I=94 E=4.251e-134 |
Undecaprenyl pyrophosphate synthase EC=2.5.1.31 ; Cell cycle division shape wall biogenesis/degradation Peptidoglycan synthesis Transferase |
||
![]() |
1 |
253 |
S=1173 I=92 E=9.99008e-134 |
Undecaprenyl pyrophosphate synthase EC=2.5.1.31 ; Cell shape wall biogenesis/degradation Peptidoglycan synthesis Transferase |
||
![]() |
1 |
253 |
S=1147 I=90 E=1.42471e-130 |
Undecaprenyl pyrophosphate synthase EC=2.5.1.31 ; Cell cycle division shape wall biogenesis/degradation Peptidoglycan synthesis Transferase |
||
![]() |
1 |
253 |
S=862 I=63 E=4.98899e-96 |
Undecaprenyl pyrophosphate synthase EC=2.5.1.31 ; Cell cycle division shape wall biogenesis/degradation Peptidoglycan synthesis Transferase |
||
![]() |
1 |
253 |
S=859 I=63 E=9.67804e-96 |
Undecaprenyl pyrophosphate synthase EC=2.5.1.31 ; Cell cycle division shape wall biogenesis/degradation Peptidoglycan synthesis Transferase |
||
![]() |
IPR001441 [G3DSA:3.40.1180.10] | 1 |
246 |
Di-trans-poly-cis-decaprenylcistransferase-like |
![]() |
IPR001441 [MF_01139] | 8 |
238 |
Di-trans-poly-cis-decaprenylcistransferase-like |
![]() |
IPR001441 [PTHR10291] | 4 |
237 |
Di-trans-poly-cis-decaprenylcistransferase-like |
![]() |
IPR001441 [PF01255] | 17 |
237 |
Di-trans-poly-cis-decaprenylcistransferase-like |
![]() |
IPR001441 [TIGR00055] | 10 |
237 |
Di-trans-poly-cis-decaprenylcistransferase-like |
![]() |
IPR018520 [PS01066] | 183 |
200 |
Di-trans-poly-cis-decaprenylcistransferase-like, conserved site |
![]() |
[seg] | 145 |
157 |
- |
![]() |
12 |
232 |
S=467 I=46 E=3.7467e-49 |
![]() |
IPR001441 [SSF64005] | 6 |
233 |
Di-trans-poly-cis-decaprenylcistransferase-like |
Access unfiltered results
Miscellaneous analyses
![]() XFF4834R_chr30810 |
![]() DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
![]() |
![]() |
![]() XFF4834R_chr30830 |
ID | dxr |
AC | XFF4834R_chr30820 |
LT | XFF4834R_chr30820 |
OR | XFF4834R_chr from 3545286 to 3546476 on strand + |
DE | probable 1-deoxy-D-xylulose 5-phosphate reductoisomerase protein |
IP | 1-deoxy-D-xylulose 5-phosphate reductoisomerase; NAD(P)-binding domain |
CL | 1.5.3.19 Isoprenoid biosynthesis GO:0008299 |
EC | |
GO |
InterPro Biological Process: isoprenoid biosynthetic process (GO:0008299) Biological Process: oxidation reduction (GO:0055114) Biological Process: metabolic process (GO:0008152) Molecular Function: metal ion binding (GO:0046872) Molecular Function: binding (GO:0005488) Molecular Function: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity (GO:0030604) Molecular Function: catalytic activity (GO:0003824) Curated |
PM | |
AN | ai fait unblastP avec dxr coli car le blast n apparait pas chez NCBI en blastX existe aussi sous le nom ispC |
CC | COG: [I] Lipid transport and metabolism; |
CC | MODEL: XFF4834R |
CC | STATUS: validated by jacques (20110713) |
MW | 40920.3 Da |
SQ | 396 aa |
........10........20........30........40........50 |
![]() |
NP_641750.1 lcl|dxr-XAC1415 |
1 |
396 |
S=1694 I=85 E=0 |
1-deoxy-D-xylulose 5-phosphate reductoisomerase |
![]() |
YP_363203.1 lcl|dxr-XCV1472 |
1 |
396 |
S=1659 I=84 E=0 |
1-deoxy-D-xylulose 5-phosphate reductoisomerase |
![]() |
NP_636741.1 lcl|dxr-XCC1367 |
1 |
396 |
S=1591 I=80 E=0 |
1-deoxy-D-xylulose 5-phosphate reductoisomerase |
![]() |
7 |
396 |
S=1272 I=67 E=6.77422e-147 |
probable 1-deoxy-d-xylulose 5-phosphate reductoisomerase protein |
![]() |
4 |
393 |
S=820 I=46 E=1.49027e-90 |
1-deoxy-D-xylulose 5-phosphate reductoisomerase EC=1.1.1.267 ; Isoprene biosynthesis Metal-binding NADP Oxidoreductase |
Pubmed 11034300 |
|
![]() |
4 |
382 |
S=789 I=44 E=7.459e-87 |
1-deoxy-D-xylulose 5-phosphate reductoisomerase EC=1.1.1.267 ; Cobalt Isoprene biosynthesis Magnesium Manganese Metal-binding NADP Oxidoreductase |
Pubmed 11004410 |
|
![]() |
7 |
386 |
S=732 I=43 E=7.41553e-80 |
Putative plastid 1-deoxy-D-xylulose 5-phosphate reductoisomerase EC=1.1.1.267 ; Oxidoreductase Transit peptide |
Pubmed 18799712 |
|
![]() |
7 |
389 |
S=730 I=38 E=1.0883e-79 |
1-deoxy-D-xylulose 5-phosphate reductoisomerase EC=1.1.1.267 ; Isoprene biosynthesis Metal-binding NADP Oxidoreductase |
Pubmed 18391199 |
|
![]() |
7 |
386 |
S=729 I=43 E=1.59718e-79 |
Chloroplast 1-deoxy-D-xylulose 5-phosphate reductoisomerase EC=1.1.1.267 ; Oxidoreductase |
Pubmed 18040591 |
|
![]() |
1 |
396 |
S=1694 I=85 E=0 |
1-deoxy-D-xylulose 5-phosphate reductoisomerase EC=1.1.1.267 ; Isoprene biosynthesis Metal-binding NADP Oxidoreductase |
||
![]() |
1 |
396 |
S=1659 I=84 E=0 |
1-deoxy-D-xylulose 5-phosphate reductoisomerase EC=1.1.1.267 ; Isoprene biosynthesis Metal-binding NADP Oxidoreductase |
||
![]() |
1 |
396 |
S=1630 I=82 E=0 |
1-deoxy-D-xylulose 5-phosphate reductoisomerase EC=1.1.1.267 ; Isoprene biosynthesis Metal-binding NADP Oxidoreductase |
||
![]() |
1 |
396 |
S=1629 I=82 E=0 |
1-deoxy-D-xylulose 5-phosphate reductoisomerase EC=1.1.1.267 ; Isoprene biosynthesis Metal-binding NADP Oxidoreductase |
||
![]() |
1 |
396 |
S=1629 I=82 E=0 |
1-deoxy-D-xylulose 5-phosphate reductoisomerase EC=1.1.1.267 ; Isoprene biosynthesis Metal-binding NADP Oxidoreductase |
||
![]() |
IPR003821 [MF_00183] | 9 |
388 |
1-deoxy-D-xylulose 5-phosphate reductoisomerase |
![]() |
IPR003821 [PIRSF006205] | 6 |
395 |
1-deoxy-D-xylulose 5-phosphate reductoisomerase |
![]() |
IPR013512 [PF02670] | 9 |
137 |
1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal |
![]() |
IPR013644 [PF08436] | 151 |
235 |
1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal |
![]() |
IPR003821 [TIGR00243] | 7 |
394 |
1-deoxy-D-xylulose 5-phosphate reductoisomerase |
![]() |
[seg] | 69 |
80 |
- |
![]() |
[seg] | 83 |
98 |
- |
![]() |
[seg] | 116 |
128 |
- |
![]() |
[seg] | 192 |
204 |
- |
![]() |
99 |
226 |
S=312 I=49 E=2.54359e-30 |
![]() |
305 |
384 |
S=227 I=57 E=5.15602e-20 |
![]() |
225 |
268 |
S=162 I=64 E=3.61371e-12 |
![]() |
176 |
224 |
S=128 I=47 E=5.42585e-08 |
![]() |
227 |
286 |
S=126 I=43 E=9.07552e-08 |
![]() |
7 |
48 |
S=123 I=52 E=2.00652e-07 |
![]() |
267 |
304 |
S=118 I=61 E=8.45701e-07 |
![]() |
48 |
68 |
S=104 I=95 E=3.6241e-05 |
![]() |
[SSF55347] | 131 |
270 |
- |
![]() |
IPR016040 [SSF51735] | 5 |
155 |
NAD(P)-binding domain |
![]() |
[SSF69055] | 297 |
391 |
- |
Access unfiltered results
![]() |
Set of Uniprot with relevant PubMed cross-references ncbi-blastp |
65 hits |
![]() |
Swiss-Prot ncbi-blastp |
0 hits |
![]() |
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp |
0 hits |
![]() |
HAMAP scan |
0 hits |
![]() |
IprScan |
12 hits |
Miscellaneous analyses
![]() XFF4834R_chr32820 |
![]() DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
![]() |
![]() |
![]() XFF4834R_chr32840 |
ID | ispH |
AC | XFF4834R_chr32830 |
LT | XFF4834R_chr32830 |
OR | XFF4834R_chr from 3780611 to 3781561 on strand - |
DE | probable 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase, 4Fe-4S protein |
IP | LytB protein |
CL | 1.5.3.19 Isoprenoid biosynthesis GO:0008299 |
EC | |
GO |
InterPro Biological Process: oxidation reduction (GO:0055114) mevalonate-independent pathway (GO:0019288) Curated |
PM | |
AN | lytB = ispH |
CC | COG: [IM] Lipid transport and metabolism;Cell wall/membrane/envelope biogenesis; |
CC | MODEL: XFF4834R |
CC | STATUS: curated by brin (20100823) |
MW | 34718 Da |
SQ | 316 aa |
........10........20........30........40........50 |
![]() |
NP_641592.1 lcl|ispH-XAC1256 |
1 |
316 |
S=1651 I=100 E=0 |
4-hydroxy-3-methylbut-2-enyl diphosphate reductase |
![]() |
YP_363023.2 lcl|ispH-XCV1292 |
1 |
316 |
S=1641 I=99 E=0 |
4-hydroxy-3-methylbut-2-enyl diphosphate reductase |
![]() |
NP_636532.1 lcl|ispH-XCC1157 |
1 |
316 |
S=1594 I=97 E=0 |
4-hydroxy-3-methylbut-2-enyl diphosphate reductase |
![]() |
1 |
315 |
S=1528 I=92 E=4.7237e-178 |
probable 4-hydroxy-3-methylbut-2-enyl diphosphate reductase protein |
![]() |
1 |
314 |
S=1137 I=66 E=4.16836e-129 |
4-hydroxy-3-methylbut-2-enyl diphosphate reductase EC=1.17.1.2 ; 3Fe-4S Iron Iron-sulfur Isoprene biosynthesis Metal-binding NADP Oxidoreductase |
Pubmed 10763755 |
|
![]() |
1 |
313 |
S=1111 I=69 E=5.89302e-126 |
4-hydroxy-3-methylbut-2-enyl diphosphate reductase EC=1.17.1.2 ; 3Fe-4S Iron Iron-sulfur Isoprene biosynthesis Metal-binding NADP Oxidoreductase |
Pubmed 14983043 |
|
![]() |
2 |
310 |
S=1043 I=63 E=1.19655e-117 |
4-hydroxy-3-methylbut-2-enyl diphosphate reductase EC=1.17.1.2 ; 3Fe-4S Iron Iron-sulfur Isoprene biosynthesis Metal-binding NADP Oxidoreductase |
Pubmed 18065615 |
|
![]() |
1 |
312 |
S=1023 I=63 E=2.83184e-115 |
4-hydroxy-3-methylbut-2-enyl diphosphate reductase EC=1.17.1.2 ; 3Fe-4S Iron Iron-sulfur Isoprene biosynthesis Metal-binding NADP Oxidoreductase |
||
![]() |
9 |
288 |
S=969 I=68 E=1.07898e-108 |
LytB |
Pubmed 16318732 |
|
![]() |
1 |
316 |
S=1651 I=100 E=0 |
4-hydroxy-3-methylbut-2-enyl diphosphate reductase EC=1.17.1.2 ; 3Fe-4S Iron Iron-sulfur Isoprene biosynthesis Metal-binding NADP Oxidoreductase |
||
![]() |
1 |
316 |
S=1640 I=99 E=0 |
4-hydroxy-3-methylbut-2-enyl diphosphate reductase EC=1.17.1.2 ; 3Fe-4S Iron Iron-sulfur Isoprene biosynthesis Metal-binding NADP Oxidoreductase |
||
![]() |
1 |
315 |
S=1614 I=98 E=0 |
4-hydroxy-3-methylbut-2-enyl diphosphate reductase EC=1.17.1.2 ; 3Fe-4S Iron Iron-sulfur Isoprene biosynthesis Metal-binding NADP Oxidoreductase |
||