9 hits
XFF4834R_chr13090 | cysG | XFF4834R_chr13090 | probable siroheme synthase |
XFF4834R_chr14390 | btuR | XFF4834R_chr14390 | probable cob(I)alamin adenosyltransferase |
XFF4834R_chr14400 | cobD | XFF4834R_chr14400 | putative cobalamin biosynthesis protein |
XFF4834R_chr14420 | cobQ | XFF4834R_chr14420 | putative cobyric acid synthase |
XFF4834R_chr14430 | cobU | XFF4834R_chr14430 | probable bifunctional cobinamide kinase/ cobinamide phosphate guanylyltransferase |
XFF4834R_chr14440 | cobT | XFF4834R_chr14440 | probable nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase |
XFF4834R_chr14450 | cobC | XFF4834R_chr14450 | putative alpha-ribazole-5'-phosphate phosphatase |
XFF4834R_chr14460 | cobS | XFF4834R_chr14460 | probable cobalamin synthase |
XFF4834R_chr22750 | XFF4834R_chr22750 | putative siroheme synthase |
![]() XFF4834R_chr13080 |
![]() DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
![]() |
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![]() XFF4834R_chr13100 |
ID | cysG |
AC | XFF4834R_chr13090 |
LT | XFF4834R_chr13090 |
OR | XFF4834R_chr from 1490594 to 1491865 on strand - |
DE | probable siroheme synthase |
IP | Tetrapyrrole methylase; Uroporphiryn-III C-methyltransferase, conserved site; Sirohaem synthase, N-terminal; Tetrapyrrole methylase, subdomain 2; NAD(P)-binding domain |
CL | 1.5.3.13 Cobalamin (Vitamin B12) GO:0009236 |
EC | |
GO |
InterPro Biological Process: oxidation reduction (GO:0055114) Biological Process: porphyrin biosynthetic process (GO:0006779) Biological Process: metabolic process (GO:0008152) Molecular Function: methyltransferase activity (GO:0008168) Molecular Function: catalytic activity (GO:0003824) Molecular Function: binding (GO:0005488) Curated |
PM | |
AN | Including the following 3 domains:Uroporphyrinogen-III C-methyltransferase, Precorrin-2 dehydrogenase and Sirohydrochlorin ferrochelatase |
CC | COG: [H] Coenzyme transport and metabolism; |
CC | MODEL: XFF4834R |
CC | STATUS: curated by pieretti (20100331) |
MW | 44338.3 Da |
SQ | 423 aa |
........10........20........30........40........50 |
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XFF4834R_chr22750 lcl|XFF4834R_chr_2633995_2634966_f1_XFF4834R-XFF4834R_chr22750 |
156 |
242 |
S=116 I=43 E=1.83597e-07 |
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XFF4834R_chr22750 lcl|XFF4834R_chr_2633995_2634966_f1_XFF4834R-XFF4834R_chr22750 |
156 |
242 |
S=116 I=43 E=1.83597e-07 |
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NP_643647.1 lcl|cysG-XAC3340 |
1 |
398 |
S=1627 I=83 E=0 |
siroheme synthase |
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YP_365189.1 lcl|cysG-XCV3458 |
24 |
398 |
S=1462 I=81 E=6.36094e-170 |
siroheme synthase |
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NP_638527.1 lcl|cysG-XCC3181 |
24 |
398 |
S=1251 I=69 E=2.51359e-144 |
siroheme synthase |
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YP_363827.1 lcl|XCV2096 |
157 |
385 |
S=343 I=41 E=2.68261e-34 |
putative siroheme synthase |
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NP_637375.1 lcl|cysG-XCC2010 |
157 |
371 |
S=341 I=44 E=4.2214e-34 |
uroporphyrin-III C-methyltransferase |
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NP_642474.1 lcl|cysG-XAC2157 |
216 |
325 |
S=188 I=41 E=1.47221e-15 |
uroporphyrin-III C-methyltransferase |
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NP_637368.1 lcl|cysG-XCC2003 |
156 |
245 |
S=120 I=42 E=2.28129e-07 |
siroheme synthase |
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NP_637368.1 lcl|cysG-XCC2003 |
26 |
121 |
S=107 I=35 E=1.00352e-05 |
siroheme synthase |
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NP_642476.1 lcl|cysG-XAC2159 |
156 |
204 |
S=113 I=55 E=1.66535e-06 |
siroheme synthase |
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YP_363820.1 lcl|XCV2089 |
156 |
204 |
S=113 I=55 E=1.67993e-06 |
putative siroheme synthase |
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YP_363820.1 lcl|XCV2089 |
26 |
121 |
S=101 I=33 E=4.94829e-05 |
putative siroheme synthase |
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156 |
371 |
S=741 I=68 E=5.12047e-81 |
CysG ; Cobalamin biosynthesis Lyase Methyltransferase Multifunctional enzyme NAD Oxidoreductase Porphyrin S-adenosyl-L-methionine |
Pubmed 18424531 |
|
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49 |
114 |
S=171 I=50 E=6.11675e-12 |
CysG ; Cobalamin biosynthesis Lyase Methyltransferase Multifunctional enzyme NAD Oxidoreductase Porphyrin S-adenosyl-L-methionine |
Pubmed 18424531 |
|
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156 |
371 |
S=740 I=68 E=8.27118e-81 |
CysG ; Cobalamin biosynthesis Lyase Methyltransferase Multifunctional enzyme NAD Oxidoreductase Porphyrin S-adenosyl-L-methionine |
Pubmed 18424531 |
|
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49 |
114 |
S=171 I=50 E=6.06365e-12 |
CysG ; Cobalamin biosynthesis Lyase Methyltransferase Multifunctional enzyme NAD Oxidoreductase Porphyrin S-adenosyl-L-methionine |
Pubmed 18424531 |
|
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156 |
371 |
S=738 I=68 E=1.2245e-80 |
CysG ; Cobalamin biosynthesis Lyase Methyltransferase Multifunctional enzyme NAD Oxidoreductase Porphyrin S-adenosyl-L-methionine |
Pubmed 18424531 |
|
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59 |
114 |
S=151 I=50 E=1.81597e-09 |
CysG ; Cobalamin biosynthesis Lyase Methyltransferase Multifunctional enzyme NAD Oxidoreductase Porphyrin S-adenosyl-L-methionine |
Pubmed 18424531 |
|
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156 |
371 |
S=738 I=68 E=1.37147e-80 |
CysG ; Cobalamin biosynthesis Lyase Methyltransferase Multifunctional enzyme NAD Oxidoreductase Porphyrin S-adenosyl-L-methionine |
Pubmed 18424531 |
|
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61 |
114 |
S=141 I=48 E=2.48348e-08 |
CysG ; Cobalamin biosynthesis Lyase Methyltransferase Multifunctional enzyme NAD Oxidoreductase Porphyrin S-adenosyl-L-methionine |
Pubmed 18424531 |
|
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156 |
368 |
S=736 I=69 E=1.99528e-80 |
CysG ; Cobalamin biosynthesis Lyase Methyltransferase Multifunctional enzyme NAD Oxidoreductase Porphyrin S-adenosyl-L-methionine |
Pubmed 18424531 |
|
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49 |
114 |
S=171 I=50 E=5.95884e-12 |
CysG ; Cobalamin biosynthesis Lyase Methyltransferase Multifunctional enzyme NAD Oxidoreductase Porphyrin S-adenosyl-L-methionine |
Pubmed 18424531 |
|
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156 |
398 |
S=837 I=68 E=9.28358e-93 |
Siroheme synthase EC=2.1.1.107 EC=1.3.1.76 EC=4.99.1.4 ; Cobalamin biosynthesis Lyase Methyltransferase Multifunctional enzyme NAD Oxidoreductase Porphyr |
||
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28 |
114 |
S=168 I=41 E=9.30316e-12 |
Siroheme synthase EC=2.1.1.107 EC=1.3.1.76 EC=4.99.1.4 ; Cobalamin biosynthesis Lyase Methyltransferase Multifunctional enzyme NAD Oxidoreductase Porphyr |
||
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156 |
398 |
S=836 I=68 E=1.2487e-92 |
Siroheme synthase EC=2.1.1.107 EC=1.3.1.76 EC=4.99.1.4 ; Cobalamin biosynthesis Lyase Methyltransferase Multifunctional enzyme NAD Oxidoreductase Porphyr |
||
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28 |
114 |
S=176 I=43 E=9.55769e-13 |
Siroheme synthase EC=2.1.1.107 EC=1.3.1.76 EC=4.99.1.4 ; Cobalamin biosynthesis Lyase Methyltransferase Multifunctional enzyme NAD Oxidoreductase Porphyr |
||
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156 |
398 |
S=752 I=61 E=2.01778e-82 |
Siroheme synthase EC=2.1.1.107 EC=1.3.1.76 EC=4.99.1.4 ; Cobalamin biosynthesis Lyase Methyltransferase Multifunctional enzyme NAD Oxidoreductase Porphyr |
||
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IPR016040 [G3DSA:3.40.50.720] | 25 |
139 |
NAD(P)-binding domain |
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IPR014777 [G3DSA:3.40.1010.10] | 142 |
270 |
Tetrapyrrole methylase, subdomain 1 |
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IPR014776 [G3DSA:3.30.950.10] | 271 |
419 |
Tetrapyrrole methylase, subdomain 2 |
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[PTHR21091:SF16] | 203 |
402 |
- |
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[PTHR21091] | 203 |
402 |
- |
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IPR000878 [PF00590] | 158 |
368 |
Tetrapyrrole methylase |
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IPR006367 [TIGR01470] | 28 |
247 |
Sirohaem synthase, N-terminal |
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IPR006366 [TIGR01469] | 156 |
392 |
Uroporphyrin-III C-methyltransferase, C-terminal |
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[seg] | 33 |
48 |
- |
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[seg] | 123 |
144 |
- |
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[seg] | 267 |
283 |
- |
![]() |
[seg] | 399 |
423 |
- |
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156 |
397 |
S=431 I=45 E=9.48033e-45 |
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1 |
32 |
S=162 I=94 E=3.44334e-12 |
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318 |
396 |
S=158 I=40 E=1.06033e-11 |
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297 |
393 |
S=118 I=33 E=8.49108e-07 |
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55 |
122 |
S=117 I=40 E=1.18263e-06 |
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335 |
395 |
S=104 I=39 E=4.07541e-05 |
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305 |
387 |
S=104 I=34 E=4.1111e-05 |
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IPR000878 [SSF53790] | 156 |
397 |
Tetrapyrrole methylase |
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IPR016040 [SSF51735] | 25 |
125 |
NAD(P)-binding domain |
Access unfiltered results
Miscellaneous analyses
![]() XFF4834R_chr14380 |
![]() DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
![]() |
![]() |
![]() XFF4834R_chr14400 |
ID | btuR |
AC | XFF4834R_chr14390 |
LT | XFF4834R_chr14390 |
OR | XFF4834R_chr from 1649386 to 1649997 on strand + |
DE | probable cob(I)alamin adenosyltransferase |
IP | Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR |
CL | 1.5.3.13 Cobalamin (Vitamin B12) GO:0009236 |
EC | |
GO |
InterPro Biological Process: cobalamin biosynthetic process (GO:0009236) Molecular Function: ATP binding (GO:0005524) c-diamide adenosyltransferase activity (GO:0008817) Curated |
PM | |
AN | |
CC | COG: [H] Coenzyme transport and metabolism; |
CC | MODEL: XFF4834R |
CC | STATUS: curated by pieretti (20100331) |
MW | 22263.3 Da |
SQ | 203 aa |
........10........20........30........40........50 |
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YP_365051.1 lcl|cobA-XCV3320 |
1 |
203 |
S=883 I=85 E=3.7688e-100 |
cob(I)alamin adenosyltransferase |
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NP_643499.1 lcl|btuR-XAC3191 |
1 |
203 |
S=875 I=85 E=3.08142e-99 |
cob(I)alamin adenolsyltransferase |
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NP_638411.1 lcl|btuR-XCC3064 |
1 |
203 |
S=860 I=82 E=1.88791e-97 |
cob(I)alamin adenolsyltransferase |
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7 |
202 |
S=419 I=45 E=1.95877e-42 |
Cob(I)alamin adenosyltransferase EC=2.5.1.17 |
Pubmed 16088217 |
|
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11 |
202 |
S=418 I=45 E=2.2916e-42 |
Cob(I)yrinic acid a,c-diamide adenosyltransferase EC=2.5.1.17 ; ATP-binding Cobalamin biosynthesis Cytoplasm Nucleotide-binding Porphyrin |
Pubmed 2644187 |
|
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11 |
202 |
S=413 I=44 E=1.13987e-41 |
Cob(I)yrinic acid a,c-diamide adenosyltransferase EC=2.5.1.17 ; ATP-binding Cobalamin biosynthesis Cytoplasm Nucleotide-binding Porphyrin |
Pubmed 7916712 |
|
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5 |
203 |
S=372 I=41 E=1.02236e-36 |
Cob(I)yrinic acid a,c-diamide adenosyltransferase EC=2.5.1.17 ; ATP-binding Cobalamin biosynthesis Cytoplasm Manganese Nucleotide-binding Porphyri |
||
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23 |
203 |
S=357 I=44 E=6.04908e-35 |
Cob(I)alamin adenosyltransferase EC=2.5.1.17 |
Pubmed 9256491 |
|
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18 |
203 |
S=215 I=33 E=9.22251e-18 |
BtuR protein |
Pubmed 9742225 |
|
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33 |
167 |
S=135 I=30 E=5.81198e-08 |
CobA |
Pubmed 12055304 |
|
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121 |
189 |
S=122 I=35 E=2.20443e-06 |
Uncharacterized protein all2391 |
Pubmed 7883709 |
|
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4 |
203 |
S=591 I=60 E=2.23032e-63 |
Cob(I)yrinic acid a,c-diamide adenosyltransferase EC=2.5.1.17 ; ATP-binding Cobalamin biosynthesis Cytoplasm Manganese Nucleotide-binding Porphyrin |
||
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11 |
202 |
S=418 I=45 E=1.58727e-42 |
Cob(I)yrinic acid a,c-diamide adenosyltransferase EC=2.5.1.17 ; ATP-binding Cobalamin biosynthesis Cytoplasm Nucleotide-binding Porphyrin |
||
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11 |
202 |
S=418 I=45 E=1.58727e-42 |
Cob(I)yrinic acid a,c-diamide adenosyltransferase EC=2.5.1.17 ; ATP-binding Cobalamin biosynthesis Cytoplasm Nucleotide-binding Porphyrin |
||
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11 |
202 |
S=413 I=44 E=7.89528e-42 |
Cob(I)yrinic acid a,c-diamide adenosyltransferase EC=2.5.1.17 ; ATP-binding Cobalamin biosynthesis Cytoplasm Nucleotide-binding Porphyrin |
||
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5 |
203 |
S=372 I=41 E=7.08135e-37 |
Cob(I)yrinic acid a,c-diamide adenosyltransferase EC=2.5.1.17 ; ATP-binding Cobalamin biosynthesis Cytoplasm Manganese Nucleotide-binding Porphyri |
||
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[G3DSA:3.40.50.300] | 32 |
203 |
- |
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IPR003724 [PIRSF015617] | 1 |
203 |
Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR |
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IPR003724 [PF02572] | 32 |
202 |
Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR |
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[PF12557] | 3 |
26 |
- |
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IPR003724 [TIGR00708] | 29 |
203 |
Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR |
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[seg] | 43 |
50 |
- |
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[seg] | 103 |
120 |
- |
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77 |
203 |
S=268 I=47 E=5.46085e-25 |
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1 |
36 |
S=172 I=92 E=2.12693e-13 |
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[SSF52540] | 12 |
203 |
- |
Access unfiltered results
![]() |
Set of Uniprot with relevant PubMed cross-references ncbi-blastp |
8 hits |
![]() |
Swiss-Prot ncbi-blastp |
6 hits |
![]() |
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp |
0 hits |
![]() |
HAMAP scan |
0 hits |
![]() |
IprScan |
8 hits |
Miscellaneous analyses
![]() XFF4834R_chr14390 |
![]() DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
![]() |
![]() |
![]() XFF4834R_chr_4648 |
ID | cobD |
AC | XFF4834R_chr14400 |
LT | XFF4834R_chr14400 |
OR | XFF4834R_chr from 1650068 to 1650982 on strand + |
DE | putative cobalamin biosynthesis protein |
IP | Cobalamin (vitamin B12) biosynthesis CbiB |
CL | 1.5.3.13 Cobalamin (Vitamin B12) GO:0009236 |
EC | |
GO |
InterPro Biological Process: cobalamin biosynthetic process (GO:0009236) Cellular Component: integral to membrane (GO:0016021) Curated |
PM | |
AN | |
CC | COG: [H] Coenzyme transport and metabolism; |
CC | MODEL: XFF4834R |
CC | STATUS: curated by pieretti (20100331) |
MW | 32129 Da |
SQ | 304 aa |
........10........20........30........40........50 |
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NP_643498.1 lcl|cobD-XAC3190 |
1 |
304 |
S=1404 I=92 E=4.5481e-163 |
cobalamin biosynthesis protein |
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YP_365050.1 lcl|cobD-XCV3319 |
1 |
304 |
S=1350 I=90 E=1.35754e-156 |
cobalamin biosynthesis protein |
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NP_638409.1 lcl|cobD-XCC3062 |
1 |
288 |
S=1026 I=79 E=2.93067e-117 |
cobalamin biosynthesis protein |
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9 |
299 |
S=379 I=39 E=2.35093e-37 |
Cobalamin biosynthesis protein cobD ; Cell membrane Transmembrane |
||
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8 |
285 |
S=337 I=36 E=3.65206e-32 |
CbiB |
Pubmed 12055304 |
|
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2 |
268 |
S=326 I=31 E=7.5241e-31 |
Cobalamin biosynthesis protein |
Pubmed 17121823 |
|
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2 |
269 |
S=318 I=30 E=5.63816e-30 |
Cobalamin biosynthesis protein |
||
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11 |
281 |
S=299 I=34 E=1.45593e-27 |
Cobalamin biosynthesis protein cobD ; Cell membrane Porphyrin Transmembrane |
Pubmed 2211520 |
|
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1 |
284 |
S=284 I=33 E=9.07704e-26 |
Cobalamin biosynthesis protein cbiB ; Cell membrane Transmembrane |
Pubmed 8501034 |
|
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2 |
282 |
S=280 I=33 E=2.89434e-25 |
Cobalamin biosynthesis protein |
Pubmed 16088217 |
|
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92 |
295 |
S=270 I=41 E=4.35665e-24 |
CobD protein |
Pubmed 10200311 |
|
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18 |
294 |
S=674 I=59 E=3.38178e-73 |
Cobalamin biosynthesis protein cobD ; Cell membrane Transmembrane |
||
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1 |
285 |
S=631 I=54 E=4.6905e-68 |
Cobalamin biosynthesis protein cobD ; Cell membrane Porphyrin Transmembrane |
||
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9 |
288 |
S=607 I=53 E=4.36354e-65 |
Cobalamin biosynthesis protein cobD ; Cell membrane Transmembrane |
||
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4 |
297 |
S=403 I=39 E=2.12741e-40 |
Cobalamin biosynthesis protein cobD ; Cell membrane Transmembrane |
||
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11 |
294 |
S=390 I=39 E=8.35546e-39 |
Cobalamin biosynthesis protein cobD ; Cell membrane Transmembrane |
||
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IPR004485 [PF03186] | 4 |
286 |
Cobalamin (vitamin B12) biosynthesis CbiB |
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IPR004485 [TIGR00380] | 1 |
294 |
Cobalamin (vitamin B12) biosynthesis CbiB |
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[seg] | 125 |
138 |
- |
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[SignalP-NN(euk)] | 1 |
17 |
- |
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173 |
284 |
S=215 I=48 E=1.31695e-18 |
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85 |
172 |
S=171 I=47 E=3.27597e-13 |
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48 |
75 |
S=112 I=82 E=4.57588e-06 |
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257 |
288 |
S=105 I=75 E=3.3404e-05 |
Access unfiltered results
![]() |
Set of Uniprot with relevant PubMed cross-references ncbi-blastp |
8 hits |
![]() |
Swiss-Prot ncbi-blastp |
52 hits |
![]() |
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp |
0 hits |
![]() |
HAMAP scan |
0 hits |
![]() |
IprScan |
4 hits |
Miscellaneous analyses
![]() XFF4834R_chr_4649 |
![]() DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
![]() |
![]() |
![]() XFF4834R_chr14430 |
ID | cobQ |
AC | XFF4834R_chr14420 |
LT | XFF4834R_chr14420 |
OR | XFF4834R_chr from 1652055 to 1653530 on strand + |
DE | putative cobyric acid synthase |
IP | Cobyric acid synthase CobQ; CobB/CobQ-like glutamine amidotransferase |
CL | 1.5.3.13 Cobalamin (Vitamin B12) GO:0009236 |
EC | |
GO |
InterPro Biological Process: cobalamin biosynthetic process (GO:0009236) Molecular Function: catalytic activity (GO:0003824) Curated |
PM | |
AN | |
CC | COG: [H] Coenzyme transport and metabolism; |
CC | MODEL: acur |
CC | STATUS: curated by pieretti (20100331) |
MW | 51847.9 Da |
SQ | 491 aa |
........10........20........30........40........50 |
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NP_643496.1 lcl|cobQ-XAC3188 |
1 |
491 |
S=2238 I=89 E=0 |
cobyric acid synthase |
![]() |
YP_365048.1 lcl|cobQ-XCV3317 |
1 |
435 |
S=2079 I=93 E=0 |
cobyric acid synthase |
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NP_638408.2 lcl|XCC3061 |
1 |
491 |
S=1949 I=78 E=0 |
cobyric acid synthase |
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6 |
432 |
S=1022 I=51 E=5.40448e-115 |
Cobyric acid synthase ; Cobalamin biosynthesis Glutamine amidotransferase |
||
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1 |
434 |
S=984 I=49 E=2.27026e-110 |
Cobyric acid synthase ; Cobalamin biosynthesis Glutamine amidotransferase |
Pubmed 17965706 |
|
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1 |
435 |
S=960 I=45 E=1.72825e-107 |
Cobyric acid synthase ; Cobalamin biosynthesis Glutamine amidotransferase |
||
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4 |
432 |
S=951 I=47 E=2.16617e-106 |
Cobyric acid synthase ; Cobalamin biosynthesis Glutamine amidotransferase |
||
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1 |
435 |
S=949 I=44 E=4.42778e-106 |
Cobyric acid synthase ; Cobalamin biosynthesis Glutamine amidotransferase |
Pubmed 17121823 |
|
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4 |
433 |
S=944 I=47 E=1.62321e-105 |
Cobyric acid synthase ; Cobalamin biosynthesis Glutamine amidotransferase |
Pubmed 8501034 |
|
![]() |
4 |
434 |
S=930 I=50 E=8.65012e-104 |
Putative cobyric acid synthase ; Cobalamin biosynthesis Glutamine amidotransferase |
Pubmed 16088217 |
|
![]() |
3 |
434 |
S=921 I=45 E=1.0842e-102 |
Cobyric acid synthase ; Cobalamin biosynthesis Glutamine amidotransferase |
Pubmed 12446909 |
|
![]() |
6 |
432 |
S=902 I=45 E=2.23184e-100 |
Cobyric acid synthase ; Cobalamin biosynthesis Glutamine amidotransferase |
Pubmed 19014707 |
|
![]() |
4 |
434 |
S=848 I=42 E=8.21226e-94 |
Cobyric acid synthase ; Cobalamin biosynthesis Glutamine amidotransferase |
Pubmed 18812508 |
|
![]() |
1 |
491 |
S=2238 I=89 E=0 |
Cobyric acid synthase ; Cobalamin biosynthesis Glutamine amidotransferase |
||
![]() |
1 |
435 |
S=2079 I=93 E=0 |
Cobyric acid synthase ; Cobalamin biosynthesis Glutamine amidotransferase |
||
![]() |
1 |
491 |
S=1936 I=78 E=0 |
Cobyric acid synthase ; Cobalamin biosynthesis Glutamine amidotransferase |
||
![]() |
1 |
436 |
S=1577 I=68 E=0 |
Cobyric acid synthase ; Cobalamin biosynthesis Glutamine amidotransferase |
||
![]() |
4 |
433 |
S=1541 I=70 E=6.05983e-178 |
Cobyric acid synthase ; Cobalamin biosynthesis Glutamine amidotransferase |
||
![]() |
[G3DSA:3.40.50.300] | 3 |
246 |
- |
![]() |
[G3DSA:3.40.50.880] | 250 |
451 |
- |
![]() |
[PTHR21343] | 5 |
264 |
- |
![]() |
IPR011698 [PF07685] | 285 |
435 |
CobB/CobQ-like glutamine amidotransferase |
![]() |
[PF01656] | 6 |
230 |
- |
![]() |
IPR004459 [TIGR00313] | 6 |
479 |
Cobyric acid synthase CobQ |
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[seg] | 398 |
412 |
- |
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[seg] | 437 |
468 |
- |
![]() |
51 |
239 |
S=623 I=68 E=6.18736e-68 |
![]() |
258 |
352 |
S=199 I=46 E=1.43036e-16 |
![]() |
6 |
50 |
S=150 I=64 E=1.38647e-10 |
![]() |
232 |
258 |
S=125 I=93 E=1.25652e-07 |
![]() |
356 |
434 |
S=120 I=37 E=6.5286e-07 |
![]() |
[SSF52540] | 1 |
246 |
- |
![]() |
[SSF52317] | 248 |
429 |
- |
Access unfiltered results
Miscellaneous analyses
![]() XFF4834R_chr14420 |
![]() DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
![]() |
![]() |
![]() XFF4834R_chr14440 |
ID | cobU |
AC | XFF4834R_chr14430 |
LT | XFF4834R_chr14430 |
OR | XFF4834R_chr from 1653518 to 1654039 on strand + |
DE | probable bifunctional cobinamide kinase/ cobinamide phosphate guanylyltransferase |
IP | Cobinamide kinase/cobinamide phosphate guanyltransferase |
CL | 1.5.3.13 Cobalamin (Vitamin B12) GO:0009236 |
EC | |
GO |
InterPro Biological Process: cofactor biosynthetic process (GO:0051188) Molecular Function: nucleotide binding (GO:0000166) Molecular Function: adenosylcobinamide-phosphate guanylyltransferase activity (GO:0043753) Molecular Function: adenosylcobinamide kinase activity (GO:0043752) Curated |
PM | |
AN | |
CC | COG: [H] Coenzyme transport and metabolism; |
CC | MODEL: XFF4834R |
CC | STATUS: curated by pieretti (20100331) |
MW | 18813.6 Da |
SQ | 173 aa |
........10........20........30........40........50 |
![]() |
NP_643495.1 lcl|cobU-XAC3187 |
1 |
173 |
S=829 I=93 E=1.06565e-93 |
adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase |
![]() |
YP_365047.1 lcl|cobU-XCV3316 |
1 |
169 |
S=773 I=89 E=5.55744e-87 |
adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase |
![]() |
NP_638407.1 lcl|cobU-XCC3060 |
1 |
173 |
S=712 I=81 E=1.51905e-79 |
adenosylcobinamide kinase/adenosylcobinamide- phosphate guanylyltransferase |
![]() |
1 |
171 |
S=450 I=60 E=2.34786e-46 |
Putative cobinamide kinase |
Pubmed 14973122 |
|
![]() |
4 |
170 |
S=370 I=47 E=1.15911e-36 |
Bifunctional adenosylcobalamin biosynthesis protein cobP EC=2.7.1.156 EC=2.7.7.62 ; ATP-binding GTP-binding Kinase Multifunctional enzyme Nucleoti |
||
![]() |
1 |
169 |
S=325 I=45 E=3.98104e-31 |
Cobinamide kinase and guanylyltransferase ; Nucleotidyltransferase |
Pubmed 16088217 |
|
![]() |
4 |
169 |
S=315 I=45 E=5.94036e-30 |
CobP protein Cobinamide kinase / Cobinamide phosphate guanylyltransferase ; Nucleotidyltransferase |
||
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1 |
169 |
S=276 I=40 E=2.86893e-25 |
Putative cobinamide kinase/cobinamide phosphate guanylyltransferase ; Nucleotidyltransferase |
Pubmed 17049458 |
|
![]() |
1 |
169 |
S=276 I=40 E=3.56765e-25 |
Bifunctional adenosylcobalamin biosynthesis protein cobU EC=2.7.1.156 EC=2.7.7.62 ; ATP-binding GTP-binding Kinase Multifunctional enzyme Nucleoti |
Pubmed 7592411 |
|
![]() |
4 |
170 |
S=275 I=40 E=4.47539e-25 |
Cobinamide kinase EC=2.7.1.- ; ATP-binding Nucleotide-binding Transferase |
Pubmed 12446909 |
|
![]() |
1 |
169 |
S=273 I=40 E=7.95684e-25 |
CobU |
Pubmed 16547059 |
|
![]() |
1 |
169 |
S=268 I=40 E=2.79253e-24 |
Bifunctional adenosylcobalamin biosynthesis protein cobU EC=2.7.1.156 EC=2.7.7.62 ; ATP-binding GTP-binding Kinase Multifunctional enzyme Nucleot |
Pubmed 8501034 |
|
![]() |
1 |
171 |
S=499 I=64 E=2.05874e-52 |
Bifunctional adenosylcobalamin biosynthesis protein cobP EC=2.7.1.156 EC=2.7.7.62 ; ATP-binding GTP-binding Kinase Multifunctional enzyme Nucleotide-bind |
||
![]() |
4 |
170 |
S=370 I=47 E=8.06173e-37 |
Bifunctional adenosylcobalamin biosynthesis protein cobP EC=2.7.1.156 EC=2.7.7.62 ; ATP-binding GTP-binding Kinase Multifunctional enzyme Nucleoti |
||
![]() |
1 |
169 |
S=276 I=40 E=2.48133e-25 |
Bifunctional adenosylcobalamin biosynthesis protein cobU EC=2.7.1.156 EC=2.7.7.62 ; ATP-binding GTP-binding Kinase Multifunctional enzyme Nucleoti |
||
![]() |
1 |
169 |
S=276 I=40 E=2.48133e-25 |
Bifunctional adenosylcobalamin biosynthesis protein cobU EC=2.7.1.156 EC=2.7.7.62 ; ATP-binding GTP-binding Kinase Multifunctional enzyme Nucleo |
||
![]() |
1 |
169 |
S=268 I=40 E=1.94222e-24 |
Bifunctional adenosylcobalamin biosynthesis protein cobU EC=2.7.1.156 EC=2.7.7.62 ; ATP-binding GTP-binding Kinase Multifunctional enzyme Nucleot |
||
![]() |
[G3DSA:3.40.50.300] | 2 |
169 |
- |
![]() |
IPR003203 [PIRSF006135] | 1 |
171 |
Cobinamide kinase/cobinamide phosphate guanyltransferase |
![]() |
IPR003203 [PF02283] | 4 |
167 |
Cobinamide kinase/cobinamide phosphate guanyltransferase |
![]() |
[seg] | 64 |
74 |
- |
![]() |
30 |
169 |
S=317 I=51 E=6.40134e-31 |
![]() |
4 |
94 |
S=150 I=34 E=9.8204e-11 |
![]() |
30 |
63 |
S=140 I=71 E=1.55758e-09 |
![]() |
1 |
29 |
S=135 I=100 E=6.01672e-09 |
![]() |
1 |
52 |
S=123 I=55 E=1.80342e-07 |
![]() |
1 |
25 |
S=103 I=88 E=4.73885e-05 |
![]() |
[SSF52540] | 2 |
169 |
- |
Access unfiltered results
![]() |
Set of Uniprot with relevant PubMed cross-references ncbi-blastp |
9 hits |
![]() |
Swiss-Prot ncbi-blastp |
5 hits |
![]() |
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp |
0 hits |
![]() |
HAMAP scan |
0 hits |
![]() |
IprScan |
5 hits |
Miscellaneous analyses
![]() XFF4834R_chr14430 |
![]() DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
![]() |
![]() |
![]() XFF4834R_chr14450 |
ID | cobT |
AC | XFF4834R_chr14440 |
LT | XFF4834R_chr14440 |
OR | XFF4834R_chr from 1654036 to 1655082 on strand + |
DE | probable nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase |
IP | Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase-like, core; Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, core, prokaryotic |
CL | 1.5.3.13 Cobalamin (Vitamin B12) GO:0009236 |
EC | |
GO |
InterPro Biological Process: nucleoside biosynthetic process (GO:0009163) Biological Process: cobalamin biosynthetic process (GO:0009236) Molecular Function: nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity (GO:0008939) Curated |
PM | |
AN | |
CC | COG: [H] Coenzyme transport and metabolism; |
CC | MODEL: XFF4834R |
CC | STATUS: curated by pieretti (20100331) |
MW | 35909.7 Da |
SQ | 348 aa |
........10........20........30........40........50 |
![]() |
NP_643494.1 lcl|cobT-XAC3186 |
1 |
348 |
S=1619 I=95 E=0 |
nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase |
![]() |
YP_365046.1 lcl|cobT-XCV3315 |
1 |
348 |
S=1602 I=93 E=0 |
nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase |
![]() |
NP_638406.1 lcl|cobT-XCC3059 |
1 |
348 |
S=1452 I=85 E=7.66696e-169 |
nicotinate-nucleotide--dimethylbenzimidazolephosphoribosyltransferase |
![]() |
38 |
347 |
S=822 I=56 E=6.25117e-91 |
Nicotinate nucleotide diethylbenzimidazole phosphoribosyltransferase ; Cobalamin biosynthesis Glycosyltransferase |
Pubmed 12904565 |
|
![]() |
13 |
346 |
S=528 I=36 E=2.81639e-55 |
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase EC=2.4.2.21 ; Cobalamin biosynthesis Glycosyltransferase |
Pubmed 18524787 |
|
![]() |
20 |
347 |
S=511 I=44 E=2.96269e-53 |
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase EC=2.4.2.21 ; Cobalamin biosynthesis Glycosyltransferase Plasmid |
Pubmed 10200311 |
|
![]() |
13 |
345 |
S=511 I=39 E=2.98863e-53 |
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase EC=2.4.2.21 ; Cobalamin biosynthesis Glycosyltransferase |
Pubmed 16088217 |
|
![]() |
24 |
346 |
S=500 I=41 E=5.99833e-52 |
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase EC=2.4.2.21 ; Cobalamin biosynthesis Glycosyltransferase |
||
![]() |
13 |
347 |
S=499 I=40 E=1.01209e-51 |
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase EC=2.4.2.21 ; Cobalamin biosynthesis Glycosyltransferase |
Pubmed 1917841 |
|
![]() |
1 |
345 |
S=487 I=35 E=2.46083e-50 |
CobT ; Cobalamin biosynthesis Glycosyltransferase |
Pubmed 16547059 |
|
![]() |
14 |
345 |
S=468 I=35 E=5.02169e-48 |
Putative dimethylbenzimidazol phosphoribosyltransferase ; Cobalamin biosynthesis Glycosyltransferase |
Pubmed 17049458 |
|
![]() |
15 |
345 |
S=458 I=34 E=8.6149e-47 |
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase EC=2.4.2.21 ; Cobalamin biosynthesis Glycosyltransferase |
Pubmed 7592411 |
|
![]() |
12 |
345 |
S=454 I=35 E=2.7953e-46 |
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase EC=2.4.2.21 ; Cobalamin biosynthesis Disulfide bond Glycosyltransferase |
Pubmed 7883701 |
|
![]() |
1 |
348 |
S=1619 I=95 E=0 |
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase EC=2.4.2.21 ; Cobalamin biosynthesis Glycosyltransferase |
||
![]() |
1 |
348 |
S=1602 I=93 E=0 |
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase EC=2.4.2.21 ; Cobalamin biosynthesis Glycosyltransferase |
||
![]() |
1 |
348 |
S=1556 I=91 E=4.71724e-180 |
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase EC=2.4.2.21 ; Cobalamin biosynthesis Glycosyltransferase |
||
![]() |
1 |
348 |
S=1549 I=91 E=3.59702e-179 |
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase EC=2.4.2.21 ; Cobalamin biosynthesis Glycosyltransferase |
||
![]() |
1 |
348 |
S=1452 I=85 E=2.003e-167 |
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase EC=2.4.2.21 ; Cobalamin biosynthesis Glycosyltransferase |
||
![]() |
[G3DSA:1.10.1610.10] | 1 |
49 |
- |
![]() |
[G3DSA:3.40.50.10210] | 56 |
328 |
- |
![]() |
[PTHR21712:SF4] | 19 |
348 |
- |
![]() |
[PTHR21712] | 19 |
348 |
- |
![]() |
IPR003200 [PF02277] | 9 |
345 |
Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase-like, core |
![]() |
IPR017846 [TIGR03160] | 13 |
345 |
Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, core, prokaryotic |
![]() |
[seg] | 243 |
255 |
- |
![]() |
13 |
347 |
S=728 I=53 E=9.5439e-81 |
![]() |
IPR003200 [SSF52733] | 3 |
348 |
Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase-like, core |
Access unfiltered results
Miscellaneous analyses
![]() XFF4834R_chr14440 |
![]() DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
![]() |
![]() |
![]() XFF4834R_chr14460 |
ID | cobC |
AC | XFF4834R_chr14450 |
LT | XFF4834R_chr14450 |
OR | XFF4834R_chr from 1655079 to 1655693 on strand + |
DE | putative alpha-ribazole-5'-phosphate phosphatase |
IP | Histidine phosphatase superfamily, clade-1 |
CL | 1.5.3.13 Cobalamin (Vitamin B12) GO:0009236 |
EC | |
GO |
InterPro Curated |
PM | |
AN | |
CC | COG: [G] Carbohydrate transport and metabolism; |
CC | MODEL: XFF4834R |
CC | STATUS: curated by elauber (20110119) |
MW | 22186.9 Da |
SQ | 204 aa |
........10........20........30........40........50 |
![]() |
XFF4834R_chr10320 lcl|cobC-XFF4834R_chr10320 |
4 |
164 |
S=103 I=29 E=3.10825e-06 |
predicted alpha-ribazole-5'-P phosphatase |
![]() |
NP_643493.1 lcl|XAC3185-XAC3185 |
1 |
204 |
S=971 I=92 E=8.25579e-111 |
hypothetical protein |
![]() |
YP_365045.1 lcl|XCV3314 |
1 |
195 |
S=852 I=86 E=1.71212e-96 |
putative alpha-ribazole-5'-phosphate phosphatase |
![]() |
NP_638405.1 lcl|XCC3058 |
1 |
185 |
S=793 I=82 E=2.7495e-89 |
hypothetical protein |
![]() |
4 |
183 |
S=112 I=30 E=9.24975e-07 |
putative phosphoglycerate mutase protein |
![]() |
NP_641375.1 lcl|pgmA-XAC1028 |
4 |
164 |
S=107 I=30 E=3.89855e-06 |
phosphoglycerate mutase |
![]() |
NP_636334.1 lcl|pgmA-XCC0948 |
4 |
164 |
S=103 I=31 E=9.82365e-06 |
phosphoglycerate mutase |
![]() |
YP_362788.1 lcl|XCV1057 |
4 |
164 |
S=102 I=29 E=1.34458e-05 |
putative phosphoglycerate mutase |
![]() |
1 |
178 |
S=381 I=46 E=9.50773e-38 |
Alpha-ribazole-5'-phosphate phosphatase |
Pubmed 12904565 |
|
![]() |
1 |
174 |
S=192 I=28 E=7.18026e-15 |
Putative uncharacterized protein |
Pubmed 19706155 |
|
![]() |
9 |
152 |
S=181 I=34 E=1.44111e-13 |
Phosphoglycerate mutase |
||
![]() |
1 |
158 |
S=148 I=28 E=1.47437e-09 |
Uncharacterized phosphatase phoE EC=3.1.3.- ; Hydrolase |
Pubmed 10869096 |
|
![]() |
7 |
175 |
S=148 I=28 E=1.51344e-09 |
Phosphoglycerate mutase |
Pubmed 17121823 |
|
![]() |
4 |
189 |
S=153 I=35 E=2.29131e-10 |
Uncharacterized protein Mb2253c |
||
![]() |
4 |
189 |
S=153 I=35 E=2.29131e-10 |
Uncharacterized protein Rv2228c/MT2287 |
||
![]() |
1 |
158 |
S=148 I=28 E=1.00876e-09 |
Uncharacterized phosphatase phoE EC=3.1.3.- ; Hydrolase |
||
![]() |
4 |
158 |
S=148 I=29 E=1.00876e-09 |
Probable phosphoglycerate mutase gpmB EC=5.4.2.1 ; Glycolysis Isomerase |
||
![]() |
4 |
158 |
S=148 I=29 E=1.00876e-09 |
Probable phosphoglycerate mutase gpmB EC=5.4.2.1 ; Glycolysis Isomerase |
||
![]() |
[G3DSA:3.40.50.1240] | 4 |
177 |
- |
![]() |
[PTHR23029] | 3 |
158 |
- |
![]() |
IPR013078 [PF00300] | 4 |
152 |
Histidine phosphatase superfamily, clade-1 |
![]() |
IPR013078 [SM00855] | 4 |
152 |
Histidine phosphatase superfamily, clade-1 |
![]() |
72 |
151 |
S=133 I=34 E=1.09083e-08 |
![]() |
47 |
129 |
S=132 I=41 E=1.48008e-08 |
![]() |
153 |
184 |
S=110 I=69 E=6.33733e-06 |
![]() |
4 |
62 |
S=102 I=44 E=6.49985e-05 |
![]() |
[SSF53254] | 1 |
184 |
- |
Access unfiltered results
![]() |
Set of Uniprot with relevant PubMed cross-references ncbi-blastp |
16 hits |
![]() |
Swiss-Prot ncbi-blastp |
76 hits |
![]() |
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp |
2 hits |
![]() |
HAMAP scan |
0 hits |
![]() |
IprScan |
5 hits |
Miscellaneous analyses