Xanthomonas fuscans subsp. fuscans

5 hits

  1. XFF4834R_chr06430dapFXFF4834R_chr06430diaminopimelate epimerase
  2. XFF4834R_chr20050dapBXFF4834R_chr20050dihydrodipicolinate reductase
  3. XFF4834R_chr25690dapA2XFF4834R_chr25690probable dihydrodipicolinate synthetase
  4. XFF4834R_chr27200asdXFF4834R_chr27200probable aspartate-semialdehyde dehydrogenase
  5. XFF4834R_chr27520dapA1XFF4834R_chr27520dihydrodipicolinate synthase

dapF XFF4834R_chr06430
XFF4834R_chr06420
XFF4834R_chr06420 		Cluster
DrawMap 		XML file

FASTA file 		Extract
Sequence 		Codon
Usage 		Framed OrthoMCL XFF4834R_chr06440
XFF4834R_chr06440
ID dapF
AC XFF4834R_chr06430
LT XFF4834R_chr06430
OR XFF4834R_chr from 732597 to 733451 on strand +
DE diaminopimelate epimerase
IP Diaminopimelate epimerase; Diaminopimelate epimerase, active site
CL 1.5.1.7 Lysine, diaminopimelate GO:0009089
EC
GO InterPro
Biological Process: lysine biosynthetic process via diaminopimelate (GO:0009089)
Cellular Component: cytoplasm (GO:0005737)
Molecular Function: diaminopimelate epimerase activity (GO:0008837)

Curated
PM
AN
CC COG: [E] Amino acid transport and metabolism;
CC MODEL: XFF4834R
CC STATUS: curated by darrasse (20120322)
MW 30091.7 Da
SQ 284 aa
  
........10........20........30........40........50
         |         |         |         |         |
MSADGRSGRLRFTKMHGAGNDFVVLDLRDGTPPPDAALAAQLADRHFGVG
CDQILTIEAPRSDGAAAAYGIWNSDGSAARQCGNGARCVAAWLVRDGTAQ
GERFIIDSPVTAHAVERLDGDRYAVAMGVPQFEPTQIPLAGFAHARDEYA
LPVHGETVRFGAVSMGNPHAVVEVGRVDAAPVERVGALLQQNAAFPDSVN
VGFAQVVDPAHVRLRVFERGVGETLACGSGACAAAVVLMQRGRVERDVQV
SLPGGELRIRWPGDQEQVVMSGPAVFVFDGEWNR

    






    

        Hamap
        DAPF_MF_00197
	raw_score=5002 norm_score=35.840
	
Diaminopimelate epimerase [dapF].

    





    

        
            
                X.species
            
                
        
YP_362420.1 lcl|dapF-XCV0689

        
1

	
284

	
S=1276 I=88 E=1.26108e-147

	
diaminopimelate epimerase

     	

   





    

        
            
                X.species
            
                
        
NP_640987.1 lcl|dapF-XAC0634

        
15

	
284

	
S=1214 I=89 E=4.068e-140

	
diaminopimelate epimerase

     	

   





    

        
            
                X.species
            
                
        
NP_638845.1 lcl|dapF-XCC3499

        
1

	
284

	
S=1157 I=80 E=3.39713e-133

	
diaminopimelate epimerase

     	

   





    

        
            
                X.species
            
                
        
 lcl|dapF-XALc_2577

        
6

	
282

	
S=960 I=67 E=2.8214e-109

	
probable diaminopimelate epimerase protein

     	

   





    

        
                pubmed
        
        

        
10

	
281

	
S=505 I=42 E=1.14854e-52

	
Diaminopimelate epimerase EC=5.1.1.7 ; Amino-acid biosynthesis Cytoplasm Isomerase Lysine

	
Pubmed 7715441

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
10

	
280

	
S=497 I=38 E=1.03358e-51

	
Diaminopimelate epimerase EC=5.1.1.7 ; Amino-acid biosynthesis Cytoplasm Isomerase Lysine

	
Pubmed 9843410

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
10

	
280

	
S=496 I=39 E=1.65507e-51

	
Diaminopimelate epimerase EC=5.1.1.7 ; Amino-acid biosynthesis Cytoplasm Isomerase Lysine

	
Pubmed 3057443,1379743

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
10

	
281

	
S=487 I=40 E=1.78868e-50

	
Diaminopimelate epimerase EC=5.1.1.7 ; Amino-acid biosynthesis Cytoplasm Isomerase Lysine

	
Pubmed 9618537

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
6

	
280

	
S=439 I=33 E=1.39423e-44

	
Diaminopimelate epimerase ; Amino-acid biosynthesis Cytoplasm Isomerase Lysine

	
Pubmed 15716086

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
15

	
281

	
S=437 I=40 E=1.99333e-44

	
Diaminopimelate epimerase ; Amino-acid biosynthesis Cytoplasm Isomerase Lysine

	
Pubmed 15305924

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
12

	
281

	
S=384 I=36 E=5.50079e-38

	
Diaminopimelate epimerase EC=5.1.1.7 ; Amino-acid biosynthesis Cytoplasm Isomerase Lysine

	
Pubmed 18700039

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
10

	
281

	
S=379 I=35 E=2.2586e-37

	
Diaminopimelate epimerase EC=5.1.1.7 ; Amino-acid biosynthesis Cytoplasm Isomerase Lysine

	
Pubmed 18441057

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
9

	
283

	
S=314 I=33 E=1.7885e-29

	
Diaminopimelate epimerase EC=5.1.1.7 ; Amino-acid biosynthesis Cytoplasm Isomerase Lysine

	
Pubmed 16857943

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
10

	
282

	
S=311 I=30 E=4.05901e-29

	
Diaminopimelate epimerase 2 ; Amino-acid biosynthesis Cytoplasm Isomerase Lysine

	
Pubmed 18226230

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
1

	
284

	
S=1288 I=89 E=1.14324e-147

	
Diaminopimelate epimerase EC=5.1.1.7 ; Amino-acid biosynthesis Cytoplasm Isomerase Lysine

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
1

	
284

	
S=1276 I=88 E=3.2238e-146

	
Diaminopimelate epimerase EC=5.1.1.7 ; Amino-acid biosynthesis Cytoplasm Isomerase Lysine

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
1

	
283

	
S=1216 I=85 E=6.90307e-139

	
Diaminopimelate epimerase EC=5.1.1.7 ; Amino-acid biosynthesis Cytoplasm Isomerase Lysine

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
1

	
284

	
S=1157 I=80 E=8.68438e-132

	
Diaminopimelate epimerase EC=5.1.1.7 ; Amino-acid biosynthesis Cytoplasm Isomerase Lysine

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
1

	
284

	
S=1157 I=80 E=8.68438e-132

	
Diaminopimelate epimerase EC=5.1.1.7 ; Amino-acid biosynthesis Cytoplasm Isomerase Lysine

	

    

    

         
        
prodomImg

    





    

        Iprscan
        
	[G3DSA:3.10.310.10]
	
124

	
284

	
	
-

    





    

        Iprscan
        
	[MF_00197]
	
10

	
284

	
	
-

    





    

        Iprscan
        IPR001653
	[PF01678]
	
12

	
109

	
	
Diaminopimelate epimerase

    





    

        Iprscan
        IPR001653
	[PF01678]
	
161

	
277

	
	
Diaminopimelate epimerase

    





    

        Iprscan
        IPR001653
	[TIGR00652]
	
10

	
284

	
	
Diaminopimelate epimerase

    





    

        Iprscan
        IPR018510
	[PS01326]
	
73

	
87

	
	
Diaminopimelate epimerase, active site

    





    

        Iprscan
        
	[seg]
	
32

	
44

	
	
-

    





    

        Iprscan
        
	[seg]
	
225

	
238

	
	
-

    





    

        
            
                
            
                
        
PDA288M5

        
92

	
145

	
S=195 I=65 E=4.28081e-16

    	
    





    

        
            
                
            
                
        
PD005029

        
149

	
281

	
S=189 I=42 E=2.16679e-15

    	
    





    

        
            
                
            
                
        
PDA1B4C3

        
144

	
283

	
S=172 I=21 E=2.33975e-13

    	
    





    

        
            
                
            
                
        
PD576858

        
12

	
92

	
S=154 I=41 E=3.51892e-11

    	
    




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Suggest an annotation


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  Validation code (copy this one xOu62IuC)  
 
     



Show or not Access unfiltered results






    

       
            
                pubmed
            
        
	    
            
Set of Uniprot with relevant PubMed cross-references ncbi-blastp

        		
 	    
            20 hits
        
    

    

        
            
                swiss-prot
            
        
	    
            
Swiss-Prot ncbi-blastp

        		
 	    
            353 hits
        
    

    
    
    

        
            
                XFF4834R
            
        
    	
            
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp

        		        
        
            0 hits
        
    

        
    

        
            
                hamap
            
        
	
            
HAMAP scan

        		        
        
            1 hits
        
    

    
    

	    
            
                Interpro Scan
            
            
	        
                
IprScan

            		        
            
                8 hits
            
    








Show or not Miscellaneous analyses




    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetLocalBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBQTzunU/XFF4834R_chr06430.xml_fasta", "https://iant.toulouse.inra.fr/bacteria/annotation/web/img/XFF4834R.png"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    
    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetNcbiBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBQTzunU/XFF4834R_chr06430.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetUniprotBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBQTzunU/XFF4834R_chr06430.xml_fasta"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetKeggBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBQTzunU/XFF4834R_chr06430.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    

    






dapB XFF4834R_chr20050




    

         
             
            XFF4834R_chr20040
            
XFF4834R_chr20040
            
        		


       
           
	   Cluster
	   
DrawMap
	   
        		
	
        
            XML file
        	


	    FASTA file
        		
	
	
             
            Extract
Sequence
            
        		
	
	
             
            Codon
Usage
            
        		
    
    
            
            Framed
            
     
  	



	
            OrthoMCL
            
    
  	
    
    
    

     


	
             
            XFF4834R_chr20060
            
XFF4834R_chr20060
            
        		

    





    

        ID
        dapB
    

    

        AC
        XFF4834R_chr20050
    

    

        LT
        XFF4834R_chr20050
    

    

        OR
        XFF4834R_chr from 2297698 to 2298414 on strand +
    

   

        DE
        dihydrodipicolinate reductase
  

   

        IP
        Dihydrodipicolinate reductase; Dihydrodipicolinate reductase, bacterial/plant; NAD(P)-binding domain
  
  
  
  

        CL
        1.5.1.7 Lysine, diaminopimelate	GO:0009089 
    

  

        EC
        
    

    
    

        GO
        
            InterPro
Biological Process: lysine biosynthetic process via diaminopimelate (GO:0009089)
Biological Process: metabolic process (GO:0008152)
Biological Process: oxidation reduction (GO:0055114)
Cellular Component: cytoplasm (GO:0005737)
Molecular Function: catalytic activity (GO:0003824)
Molecular Function: dihydrodipicolinate reductase activity (GO:0008839)
Molecular Function: binding (GO:0005488)


            Curated

        		
    


  

        PM
        
    

  

        AN
        
    

  

        CC
        COG: [E] Amino acid transport and metabolism; 
    

    

        CC
        MODEL: XFF4834R 
  
    
  

        CC
        STATUS: curated by jacques (20110221)
  

  
  


    

        MW
        24814.1 Da
    


    

        SQ
        238 aa
    

    

         
        
........10........20........30........40........50
         |         |         |         |         |
MTTSAVKVLIHGASGRMGKALLRLAAEDQTVQVVGAVVGRSPSQRVVDGV
PFFAASELGGAPAFDVAIDFSLPQGFAPILALCAQRGKPLVSGTTGLDEA
QRAALRDAAQQIALVWASNFSLGVAVLTELVERAAGTLPGWDCDILEAHH
VHKQDAPSGTALTLGEAATGSGAQPRYVSLRAGDIVGEHTVQFTGLGERV
ELVHRATNRDIFARGALHAAKRLIGKPAGSYRVRDLVL

    






    

        Hamap
        DAPB_MF_00102
	raw_score=4155 norm_score=28.807
	
Dihydrodipicolinate reductase [dapB].

    





    

        
            
                X.species
            
                
        
NP_642186.1 lcl|dapB-XAC1860

        
1

	
238

	
S=1110 I=92 E=1.4955e-127

	
dihydrodipicolinate reductase

     	

   





    

        
            
                X.species
            
                
        
YP_363637.1 lcl|dapB-XCV1906

        
1

	
238

	
S=1105 I=92 E=5.38769e-127

	
dihydrodipicolinate reductase

     	

   





    

        
            
                X.species
            
                
        
NP_637205.1 lcl|dapB-XCC1840

        
1

	
238

	
S=1044 I=85 E=1.38546e-119

	
dihydrodipicolinate reductase

     	

   





    

        
            
                X.species
            
                
        
 lcl|dapB-XALc_1337

        
1

	
237

	
S=847 I=71 E=8.93586e-96

	
probable dihydrodipicolinate reductase (dhpr) protein

     	

   





    

        
                pubmed
        
        

        
6

	
237

	
S=359 I=40 E=4.71166e-35

	
Dihydrodipicolinate reductase ; Amino-acid biosynthesis Cytoplasm Diaminopimelate Lysine NADP Oxidoreductase

	
Pubmed 16483680

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
1

	
237

	
S=351 I=37 E=4.70772e-34

	
Dihydrodipicolinate reductase EC=1.3.1.26 ; Amino-acid biosynthesis Cytoplasm Diaminopimelate Lysine NADP Oxidoreductase

	
Pubmed 6094578,1630901

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
65

	
237

	
S=332 I=39 E=9.35879e-32

	
Dihydrodipicolinate reductase EC=1.3.1.26 ; Amino-acid biosynthesis Cytoplasm Diaminopimelate Lysine NADP Oxidoreductase

	
Pubmed 19124572

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
7

	
237

	
S=332 I=38 E=9.94775e-32

	
Dihydrodipicolinate reductase EC=1.3.1.26 ; Amino-acid biosynthesis Cytoplasm Diaminopimelate Lysine NADP Oxidoreductase

	
Pubmed 14602651

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
4

	
237

	
S=315 I=29 E=9.34317e-30

	
Dihydrodipicolinate reductase EC=1.3.1.26 ; Amino-acid biosynthesis Cytoplasm Diaminopimelate Lysine NADP Oxidoreductase

	
Pubmed 17038625

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
7

	
237

	
S=312 I=38 E=2.37493e-29

	
Dihydrodipicolinate reductase EC=1.3.1.26 ; Amino-acid biosynthesis Cytoplasm Diaminopimelate Lysine NADP Oxidoreductase

	
Pubmed 8990304

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
6

	
237

	
S=305 I=35 E=1.89164e-28

	
Dihydrodipicolinate reductase EC=1.3.1.26 ; Amino-acid biosynthesis Cytoplasm Diaminopimelate Lysine NADP Oxidoreductase

	
Pubmed 15618402

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
7

	
237

	
S=300 I=37 E=6.9347e-28

	
Dihydrodipicolinate reductase EC=1.3.1.26 ; Amino-acid biosynthesis Cytoplasm Diaminopimelate Lysine NADP Oxidoreductase

	
Pubmed 8169201

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
21

	
238

	
S=289 I=32 E=1.60018e-26

	
Dihydrodipicolinate reductase EC=1.3.1.26 ; Amino-acid biosynthesis Cytoplasm Diaminopimelate Lysine NADP Oxidoreductase

	
Pubmed 15637156

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
6

	
236

	
S=288 I=34 E=2.13365e-26

	
Dihydrodipicolinate reductase EC=1.3.1.26 ; Amino-acid biosynthesis Cytoplasm Diaminopimelate Lysine NADP Oxidoreductase

	
Pubmed 11447207

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
1

	
238

	
S=1110 I=92 E=3.76336e-126

	
Dihydrodipicolinate reductase EC=1.3.1.26 ; Amino-acid biosynthesis Cytoplasm Diaminopimelate Lysine NADP Oxidoreductase

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
1

	
238

	
S=1105 I=92 E=1.35579e-125

	
Dihydrodipicolinate reductase EC=1.3.1.26 ; Amino-acid biosynthesis Cytoplasm Diaminopimelate Lysine NADP Oxidoreductase

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
1

	
238

	
S=1044 I=85 E=3.48644e-118

	
Dihydrodipicolinate reductase EC=1.3.1.26 ; Amino-acid biosynthesis Cytoplasm Diaminopimelate Lysine NADP Oxidoreductase

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
1

	
238

	
S=1044 I=85 E=3.48644e-118

	
Dihydrodipicolinate reductase EC=1.3.1.26 ; Amino-acid biosynthesis Cytoplasm Diaminopimelate Lysine NADP Oxidoreductase

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
1

	
238

	
S=1044 I=85 E=3.48644e-118

	
Dihydrodipicolinate reductase EC=1.3.1.26 ; Amino-acid biosynthesis Cytoplasm Diaminopimelate Lysine NADP Oxidoreductase

	

    

    

         
        
prodomImg

    





    

        Iprscan
        IPR016040
	[G3DSA:3.40.50.720]
	
7

	
154

	
	
NAD(P)-binding domain

    





    

        Iprscan
        
	[MF_00102]
	
6

	
238

	
	
-

    





    

        Iprscan
        IPR000846
	[PF01113]
	
6

	
120

	
	
Dihydrodipicolinate reductase

    





    

        Iprscan
        IPR000846
	[PF05173]
	
123

	
237

	
	
Dihydrodipicolinate reductase

    





    

        Iprscan
        IPR011770
	[TIGR00036]
	
5

	
237

	
	
Dihydrodipicolinate reductase, bacterial/plant

    





    

        Iprscan
        IPR000846
	[PS01298]
	
144

	
161

	
	
Dihydrodipicolinate reductase

    





    

        Iprscan
        
	[seg]
	
97

	
114

	
	
-

    





    

        
            
                
            
                
        
PD862677

        
4

	
58

	
S=239 I=91 E=1.73944e-21

    	
    





    

        
            
                
            
                
        
PD004105

        
122

	
238

	
S=209 I=39 E=7.77319e-18

    	
    




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Suggest an annotation


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Show or not Access unfiltered results






    

       
            
                pubmed
            
        
	    
            
Set of Uniprot with relevant PubMed cross-references ncbi-blastp

        		
 	    
            27 hits
        
    

    

        
            
                swiss-prot
            
        
	    
            
Swiss-Prot ncbi-blastp

        		
 	    
            446 hits
        
    

    
    
    

        
            
                XFF4834R
            
        
    	
            
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp

        		        
        
            0 hits
        
    

        
    

        
            
                hamap
            
        
	
            
HAMAP scan

        		        
        
            1 hits
        
    

    
    

	    
            
                Interpro Scan
            
            
	        
                
IprScan

            		        
            
                7 hits
            
    








Show or not Miscellaneous analyses




    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetLocalBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBQTzunU/XFF4834R_chr20050.xml_fasta", "https://iant.toulouse.inra.fr/bacteria/annotation/web/img/XFF4834R.png"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    
    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetNcbiBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBQTzunU/XFF4834R_chr20050.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetUniprotBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBQTzunU/XFF4834R_chr20050.xml_fasta"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetKeggBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBQTzunU/XFF4834R_chr20050.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    

    






dapA2 XFF4834R_chr25690




    

         
             
            XFF4834R_chr25680
            
XFF4834R_chr25680
            
        		


       
           
	   Cluster
	   
DrawMap
	   
        		
	
        
            XML file
        	


	    FASTA file
        		
	
	
             
            Extract
Sequence
            
        		
	
	
             
            Codon
Usage
            
        		
    
    
            
            Framed
            
     
  	



	
            OrthoMCL
            
    
  	
    
    
    

     


	
             
            XFF4834R_chr25700
            
XFF4834R_chr25700
            
        		

    





    

        ID
        dapA2
    

    

        AC
        XFF4834R_chr25690
    

    

        LT
        XFF4834R_chr25690
    

    

        OR
        XFF4834R_chr from 2979363 to 2980271 on strand -
    

   

        DE
        probable dihydrodipicolinate synthetase
  

   

        IP
        Dihydrodipicolinate synthetase; Aldolase-type TIM barrel
  
  
  
  

        CL
        1.5.1.7 Lysine, diaminopimelate	GO:0009089 
    

  

        EC
        
    

    
    

        GO
        
            InterPro
Biological Process: metabolic process (GO:0008152)
Molecular Function: catalytic activity (GO:0003824)
Molecular Function: lyase activity (GO:0016829)


            Curated

        		
    


  

        PM
        
    

  

        AN
        
    

  

        CC
        COG: [EM] Amino acid transport and metabolism;Cell wall/membrane/envelope biogenesis; 
    

    

        CC
        MODEL: XFF4834R 
  
    
  

        CC
        STATUS: curated by darrasse (20110304)
  

  
  


    

        MW
        31921.7 Da
    


    

        SQ
        302 aa
    

    

         
        
........10........20........30........40........50
         |         |         |         |         |
MSNAAFWHGVLPAITTPFTANGDIDHDFLGKHANQLVDAGCTAIVPLGSL
GEAATLSVEDKLAILRTLVTALNGRVPVVPGIASLATGEAVALAKAAKDI
GCGGLMVLPPYVYSTDWREMGAHVRAVIGATDLPVILYNNPVAYKTDFGP
AQIAELAAEFPNLQAVKESSGDVRRFAALQELLGDRLALLVGMDDAIVEG
LSMGAKGWIAGLVNAYPKESVRLFELARDGGYPAARELYHWFLPLLRLDT
VPTFVQLIKLVQAKVGMGSEQVRAPRLVVAGAERDAALKVIDHAIATAPK
LA

    






    

        
            
                XFF4834R
            
                
        
XFF4834R_chr27520 lcl|dapA-XFF4834R_chr27520

        
9

	
296

	
S=295 I=35 E=2.97992e-29

	
dihydrodipicolinate synthase

     	

   





    

        
            
                XFF4834R
            
                
        
XFF4834R_chr12530 lcl|XFF4834R_chr13180571_1419488_f3_XFF4834R-XFF4834R_chr12530

        
5

	
275

	
S=202 I=29 E=5.87961e-18

	

     	

   





    

        
            
                XFF4834R
            
                
        
XFF4834R_chr27520 lcl|dapA-XFF4834R_chr27520

        
9

	
296

	
S=295 I=35 E=2.97992e-29

	
dihydrodipicolinate synthase

     	

   





    

        
            
                XFF4834R
            
                
        
XFF4834R_chr12530 lcl|XFF4834R_chr13180571_1419488_f3_XFF4834R-XFF4834R_chr12530

        
5

	
275

	
S=202 I=29 E=5.87961e-18

	

     	

   





    

        
                pubmed
        
        

        
6

	
298

	
S=340 I=33 E=1.21626e-32

	
Dihydrodipicolinate synthetase ; Amino-acid biosynthesis Cytoplasm Diaminopimelate Lyase Lysine Schiff base

	
Pubmed 3514578

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
9

	
248

	
S=333 I=34 E=9.52014e-32

	
Putative uncharacterized protein

	
Pubmed 14680703

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
7

	
246

	
S=325 I=31 E=9.67952e-31

	
Dihydrodipicolinate synthase EC=4.2.1.52 ; Amino-acid biosynthesis Cytoplasm Diaminopimelate Lyase Lysine Schiff base

	
Pubmed 17563350

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
7

	
295

	
S=324 I=31 E=1.09362e-30

	
Putative dihidrodipicolinate synthase EC=4.2.1.52 ; Lyase

	
Pubmed 11511872

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
6

	
245

	
S=321 I=34 E=2.59256e-30

	
Dihydrodipicolinate synthetas ; Amino-acid biosynthesis Cytoplasm Diaminopimelate Lyase Lysine Schiff base

	
Pubmed 16113328

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
6

	
294

	
S=320 I=28 E=4.11541e-30

	
Dihydrodipicolinate synthase EC=4.2.1.52 ; Amino-acid biosynthesis Cytoplasm Diaminopimelate Lyase Lysine Schiff base

	
Pubmed 3514578

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
8

	
275

	
S=319 I=32 E=5.25334e-30

	
Dihydrodipicolinate synthase EC=4.2.1.52 ; Lyase

	
Pubmed 16329940

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
4

	
265

	
S=313 I=31 E=2.77753e-29

	
Dihydrodipicolinate synthase EC=4.2.1.52 ; Amino-acid biosynthesis Cytoplasm Diaminopimelate Lyase Lysine Schiff base

	
Pubmed 18263724

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
6

	
275

	
S=310 I=29 E=5.38806e-29

	
Dihydrodipicolinate synthase EC=4.2.1.52 ; Amino-acid biosynthesis Cytoplasm Diaminopimelate Lyase Lysine Schiff base

	
Pubmed 18700039

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
6

	
275

	
S=310 I=29 E=6.52733e-29

	
Dihydrodipicolinate synthase EC=4.2.1.52 ; Amino-acid biosynthesis Cytoplasm Diaminopimelate Lyase Lysine Schiff base

	
Pubmed 11447207

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
6

	
247

	
S=391 I=37 E=6.37117e-39

	
Dihydrodipicolinate synthase EC=4.2.1.52 ; Amino-acid biosynthesis Cytoplasm Diaminopimelate Lyase Lysine Schiff base

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
6

	
275

	
S=373 I=31 E=8.33442e-37

	
Dihydrodipicolinate synthase EC=4.2.1.52 ; Amino-acid biosynthesis Cytoplasm Diaminopimelate Lyase Lysine Schiff base

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
7

	
284

	
S=373 I=29 E=1.0009e-36

	
Dihydrodipicolinate synthase EC=4.2.1.52 ; Amino-acid biosynthesis Cytoplasm Diaminopimelate Lyase Lysine Schiff base

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
7

	
284

	
S=373 I=28 E=1.05466e-36

	
Dihydrodipicolinate synthase EC=4.2.1.52 ; Amino-acid biosynthesis Cytoplasm Diaminopimelate Lyase Lysine Schiff base

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
7

	
284

	
S=370 I=28 E=2.02814e-36

	
Dihydrodipicolinate synthase EC=4.2.1.52 ; Amino-acid biosynthesis Cytoplasm Diaminopimelate Lyase Lysine Schiff base

	

    

    

         
        
prodomImg

    





    

        Iprscan
        IPR002220
	[PR00146]
	
40

	
61

	
	
Dihydrodipicolinate synthetase

    





    

        Iprscan
        IPR002220
	[PR00146]
	
76

	
94

	
	
Dihydrodipicolinate synthetase

    





    

        Iprscan
        IPR002220
	[PR00146]
	
133

	
150

	
	
Dihydrodipicolinate synthetase

    





    

        Iprscan
        IPR013785
	[G3DSA:3.20.20.70]
	
7

	
294

	
	
Aldolase-type TIM barrel

    





    

        Iprscan
        IPR002220
	[PTHR12128]
	
1

	
296

	
	
Dihydrodipicolinate synthetase

    





    

        Iprscan
        IPR002220
	[PF00701]
	
8

	
293

	
	
Dihydrodipicolinate synthetase

    





    

        
            
                
            
                
        
PD543043

        
76

	
218

	
S=146 I=29 E=3.35353e-10

    	
    





    

        
            
                
            
                
        
PDA1V576

        
196

	
221

	
S=130 I=100 E=2.64571e-08

    	
    





    

        
            
                
            
                
        
PD485872

        
133

	
194

	
S=119 I=44 E=5.12806e-07

    	
    





    

        
            
                
            
                
        
PD728475

        
76

	
134

	
S=106 I=37 E=2.2362e-05

    	
    





    

        
            
                
            
                
        
PD001859

        
9

	
81

	
S=102 I=34 E=6.36635e-05

    	
    





    

        
            
                
            
                
        
PDA1V5Y0

        
132

	
217

	
S=101 I=34 E=8.26963e-05

    	
    





    

        Iprscan
        
	[SSF51569]
	
6

	
294

	
	
-

    




Show or not Suggestions
Suggest an annotation


Move your mouse over each field to get more informations


ID


DE


EC


GO


PM



CC


CL

 
  Your email  
 
  Validation code (copy this one 5OnI9Lq5)  
 
     



Show or not Access unfiltered results






    

       
            
                pubmed
            
        
	    
            
Set of Uniprot with relevant PubMed cross-references ncbi-blastp

        		
 	    
            107 hits
        
    

    

        
            
                swiss-prot
            
        
	    
            
Swiss-Prot ncbi-blastp

        		
 	    
            0 hits
        
    

    
    
    

        
            
                XFF4834R
            
        
    	
            
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp

        		        
        
            3 hits
        
    

        
    

        
            
                hamap
            
        
	
            
HAMAP scan

        		        
        
            0 hits
        
    

    
    

	    
            
                Interpro Scan
            
            
	        
                
IprScan

            		        
            
                7 hits
            
    








Show or not Miscellaneous analyses




    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetLocalBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBQTzunU/XFF4834R_chr25690.xml_fasta", "https://iant.toulouse.inra.fr/bacteria/annotation/web/img/XFF4834R.png"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    
    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetNcbiBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBQTzunU/XFF4834R_chr25690.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetUniprotBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBQTzunU/XFF4834R_chr25690.xml_fasta"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetKeggBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBQTzunU/XFF4834R_chr25690.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    

    






asd XFF4834R_chr27200




    

         
             
            XFF4834R_chr_2870
            
XFF4834R_chr_2870
            
        		


       
           
	   Cluster
	   
DrawMap
	   
        		
	
        
            XML file
        	


	    FASTA file
        		
	
	
             
            Extract
Sequence
            
        		
	
	
             
            Codon
Usage
            
        		
    
    
            
            Framed
            
     
  	



	
            OrthoMCL
            
    
  	
    
    
    

     


	
             
            XFF4834R_chr27210
            
XFF4834R_chr27210
            
        		

    





    

        ID
        asd
    

    

        AC
        XFF4834R_chr27200
    

    

        LT
        XFF4834R_chr27200
    

    

        OR
        XFF4834R_chr from 3135003 to 3136028 on strand -
    

   

        DE
        probable aspartate-semialdehyde dehydrogenase
  

   

        IP
        Aspartate-semialdehyde dehydrogenase, conserved site; Aspartate-semialdehyde dehydrogenase, bacterial; NAD(P)-binding domain
  
  
  
  

        CL
        1.5.1.7 Lysine, diaminopimelate	GO:0009089 
    

  

        EC
        
    

    
    

        GO
        
            InterPro
Biological Process: cellular amino acid metabolic process (GO:0006520)
Biological Process: metabolic process (GO:0008152)
Biological Process: threonine biosynthetic process (GO:0009088)
Biological Process: oxidation reduction (GO:0055114)
Biological Process: methionine biosynthetic process (GO:0009086)
Biological Process: cellular amino acid biosynthetic process (GO:0008652)
Cellular Component: cytoplasm (GO:0005737)
Molecular Function: NADP or NADPH binding (GO:0050661)
Molecular Function: NAD or NADH binding (GO:0051287)
Molecular Function: aspartate-semialdehyde dehydrogenase activity (GO:0004073)
Molecular Function: catalytic activity (GO:0003824)
Molecular Function: binding (GO:0005488)
Molecular Function: protein dimerization activity (GO:0046983)
NAD or NADP as acceptor (GO:0016620)


            Curated

        		
    


  

        PM
        
    

  

        AN
        
    

  

        CC
        COG: [E] Amino acid transport and metabolism; 
    

    

        CC
        MODEL: acur 
  
    
  

        CC
        STATUS: curated by darrasse (20110302)
  

  
  


    

        MW
        36585.9 Da
    


    

        SQ
        341 aa
    

    

         
        
........10........20........30........40........50
         |         |         |         |         |
MSNENRRFNVAVVGATGAVGETMLSILAERNFPVATLYALASSRSAGGQV
EFNGGKVDVQDLAEFDPAGVDIALFSAGGSVSKEYGPKFAAAGAVVIDNS
SAFRYDDDVPLVVSEVNPEALKQRPRGIVANPNCSTMQMLVALGPIHRTY
GIERINVATYQSVSGGGRSAMEELGKQTSELLSFQDIDPQRFPVQIAFNL
IPHIDDFQDNGYTKEEMKLVWETRKILGDDSIQVNPTAVRVPVFYGHSEA
VAIETRDKITVEAARALLAASPGVEVVDERAPGGYPTPVTHASGKDAVFV
GRIREDFSHPRGLNLWIVSDNIRKGAALNAVQLAELVAQEG

    






    

        
                pubmed
        
        

        
5

	
340

	
S=1093 I=61 E=1.04484e-123

	
Aspartate-semialdehyde dehydrogenase

	
Pubmed 15003709

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
5

	
340

	
S=1091 I=61 E=1.5334e-123

	
Aspartate-semialdehyde dehydrogenase

	
Pubmed 15003709

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
5

	
340

	
S=1090 I=61 E=2.21151e-123

	
Aspartate-semialdehyde dehydrogenase

	
Pubmed 15003709

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
5

	
340

	
S=1090 I=61 E=2.21151e-123

	
Aspartate-semialdehyde dehydrogenase

	
Pubmed 15003709

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
5

	
340

	
S=1090 I=61 E=2.21151e-123

	
Aspartate-semialdehyde dehydrogenase

	
Pubmed 15003709

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
5

	
340

	
S=1090 I=61 E=2.21151e-123

	
Aspartate-semialdehyde dehydrogenase

	
Pubmed 15003709

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
5

	
340

	
S=1090 I=61 E=2.21151e-123

	
Aspartate-semialdehyde dehydrogenase

	
Pubmed 15003709

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
5

	
340

	
S=1090 I=61 E=2.21151e-123

	
Aspartate-semialdehyde dehydrogenase

	
Pubmed 15003709

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
5

	
340

	
S=1090 I=61 E=2.21151e-123

	
Aspartate-semialdehyde dehydrogenase

	
Pubmed 15003709

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
5

	
340

	
S=1090 I=61 E=2.21151e-123

	
Aspartate-semialdehyde dehydrogenase

	
Pubmed 15003709

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
5

	
340

	
S=1061 I=60 E=4.67771e-120

	
Aspartate-semialdehyde dehydrogenase EC=1.2.1.11 ; Amino-acid biosynthesis Diaminopimelate Lysine NADP Oxidoreductase

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
5

	
340

	
S=1009 I=57 E=8.49428e-114

	
Aspartate-semialdehyde dehydrogenase EC=1.2.1.11 ; Amino-acid biosynthesis Diaminopimelate Lysine NADP Oxidoreductase

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
5

	
340

	
S=1006 I=56 E=2.1404e-113

	
Aspartate-semialdehyde dehydrogenase EC=1.2.1.11 ; Amino-acid biosynthesis Diaminopimelate Lysine NADP Oxidoreductase

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
5

	
340

	
S=961 I=57 E=5.96335e-108

	
Aspartate-semialdehyde dehydrogenase EC=1.2.1.11 ; Amino-acid biosynthesis Diaminopimelate Lysine NADP Oxidoreductase

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
22

	
341

	
S=897 I=55 E=3.4201e-100

	
Aspartate-semialdehyde dehydrogenase EC=1.2.1.11 ; Amino-acid biosynthesis Diaminopimelate Lysine NADP Oxidoreductase

	

    

    

         
        
prodomImg

    





    

        Iprscan
        
	[G3DSA:3.30.360.10]
	
133

	
338

	
	
-

    





    

        Iprscan
        IPR012080
	[PIRSF000148]
	
4

	
341

	
	
Aspartate-semialdehyde dehydrogenase

    





    

        Iprscan
        
	[PTHR10174:SF2]
	
1

	
341

	
	
-

    





    

        Iprscan
        
	[PTHR10174]
	
1

	
341

	
	
-

    





    

        Iprscan
        IPR012280
	[PF02774]
	
143

	
324

	
	
Semialdehyde dehydrogenase, dimerisation domain

    





    

        Iprscan
        IPR000534
	[PF01118]
	
9

	
123

	
	
Semialdehyde dehydrogenase, NAD-binding

    





    

        Iprscan
        IPR000534
	[SM00859]
	
9

	
124

	
	
Semialdehyde dehydrogenase, NAD-binding

    





    

        Iprscan
        IPR005986
	[TIGR01296]
	
9

	
340

	
	
Aspartate-semialdehyde dehydrogenase, bacterial

    





    

        Iprscan
        
	[seg]
	
10

	
20

	
	
-

    





    

        
            
                
            
                
        
PD618127

        
250

	
340

	
S=289 I=62 E=1.28233e-27

    	
    





    

        
            
                
            
                
        
PD002095

        
123

	
189

	
S=220 I=57 E=3.35274e-19

    	
    





    

        
            
                
            
                
        
PDA1F6R6

        
188

	
249

	
S=207 I=69 E=1.27166e-17

    	
    





    

        
            
                
            
                
        
PDA9K630

        
128

	
331

	
S=161 I=28 E=5.10975e-12

    	
    





    

        
            
                
            
                
        
PD131454

        
21

	
341

	
S=125 I=25 E=1.25014e-07

    	
    





    

        
            
                
            
                
        
PDA40391

        
92

	
182

	
S=120 I=29 E=4.6636e-07

    	
    





    

        
            
                
            
                
        
PD274058

        
31

	
91

	
S=110 I=49 E=6.95886e-06

    	
    





    

        
            
                
            
                
        
PD001262

        
90

	
117

	
S=107 I=82 E=1.7232e-05

    	
    





    

        Iprscan
        
	[SSF55347]
	
133

	
325

	
	
-

    





    

        Iprscan
        IPR016040
	[SSF51735]
	
8

	
148

	
	
NAD(P)-binding domain

    




Show or not Suggestions
Suggest an annotation


Move your mouse over each field to get more informations


ID


DE


EC


GO


PM



CC


CL

 
  Your email  
 
  Validation code (copy this one spe4ml6K)  
 
     



Show or not Access unfiltered results






    

       
            
                pubmed
            
        
	    
            
Set of Uniprot with relevant PubMed cross-references ncbi-blastp

        		
 	    
            96 hits
        
    

    

        
            
                swiss-prot
            
        
	    
            
Swiss-Prot ncbi-blastp

        		
 	    
            50 hits
        
    

    
    
    

        
            
                XFF4834R
            
        
    	
            
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp

        		        
        
            1 hits
        
    

        
    

        
            
                hamap
            
        
	
            
HAMAP scan

        		        
        
            0 hits
        
    

    
    

	    
            
                Interpro Scan
            
            
	        
                
IprScan

            		        
            
                11 hits
            
    








Show or not Miscellaneous analyses




    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetLocalBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBQTzunU/XFF4834R_chr27200.xml_fasta", "https://iant.toulouse.inra.fr/bacteria/annotation/web/img/XFF4834R.png"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    
    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetNcbiBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBQTzunU/XFF4834R_chr27200.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetUniprotBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBQTzunU/XFF4834R_chr27200.xml_fasta"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetKeggBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBQTzunU/XFF4834R_chr27200.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    

    






dapA1 XFF4834R_chr27520




    

         
             
            XFF4834R_chr27510
            
XFF4834R_chr27510
            
        		


       
           
	   Cluster
	   
DrawMap
	   
        		
	
        
            XML file
        	


	    FASTA file
        		
	
	
             
            Extract
Sequence
            
        		
	
	
             
            Codon
Usage
            
        		
    
    
            
            Framed
            
     
  	



	
            OrthoMCL
            
    
  	
    
    
    

     


	
             
            XFF4834R_chr27530
            
XFF4834R_chr27530
            
        		

    





    

        ID
        dapA1
    

    

        AC
        XFF4834R_chr27520
    

    

        LT
        XFF4834R_chr27520
    

    

        OR
        XFF4834R_chr from 3182099 to 3183007 on strand -
    

   

        DE
        dihydrodipicolinate synthase
  

   

        IP
        Dihydrodipicolinate synthetase; Dihydrodipicolinate synthase subfamily; Aldolase-type TIM barrel
  
  
  
  

        CL
        1.5.1.7 Lysine, diaminopimelate	GO:0009089 
    

  

        EC
        
    

    
    

        GO
        
            InterPro
Biological Process: metabolic process (GO:0008152)
Biological Process: diaminopimelate biosynthetic process (GO:0019877)
Molecular Function: lyase activity (GO:0016829)
Molecular Function: dihydrodipicolinate synthase activity (GO:0008840)
Molecular Function: catalytic activity (GO:0003824)


            Curated

        		
    


  

        PM
        
    

  

        AN
        
    

  

        CC
        COG: [EM] Amino acid transport and metabolism;Cell wall/membrane/envelope biogenesis; 
    

    

        CC
        MODEL: acur 
  
    
  

        CC
        STATUS: curated by darrasse (20110304)
  

  
  


    

        MW
        31103.1 Da
    


    

        SQ
        302 aa
    

    

         
        
........10........20........30........40........50
         |         |         |         |         |
MSLSGIITALATPFGPDGALDLDAWRRLLEQQLHGGVQGLVVAGSTGEAA
ALSDDEYDTLLRAAVAQVAGRVPVLAGTGLSGTAKTIAHTRRAAALGAQY
ALVVTPPYVRPTQAGLKAHFLAVAEEGGLPVVLYNVPGRTGCDLLPETVA
ELVGHPNIVGIKEARSEPERIAALVVLRSDSFVVLSGDDGSAARAMLSGA
AGLISVASNALPAAYRRLCDLARDGQRDAAAAWDARLSEYHSFCGIESNP
IPVKALLQRAGIGHGLRLPLLPLSAAHQPAADRLAADAIALEALSSREML
AA

    






    

        
            
                XFF4834R
            
                
        
XFF4834R_chr25690 lcl|XFF4834R_chr28250363_2980271_r2_XFF4834R-XFF4834R_chr25690

        
5

	
230

	
S=292 I=37 E=5.58255e-29

	

     	

   





    

        
            
                XFF4834R
            
                
        
XFF4834R_chr12530 lcl|XFF4834R_chr13180571_1419488_f3_XFF4834R-XFF4834R_chr12530

        
4

	
187

	
S=176 I=33 E=6.62631e-15

	

     	

   





    

        
            
                XFF4834R
            
                
        
XFF4834R_chr25690 lcl|XFF4834R_chr28250363_2980271_r2_XFF4834R-XFF4834R_chr25690

        
5

	
230

	
S=292 I=37 E=5.58255e-29

	

     	

   





    

        
            
                XFF4834R
            
                
        
XFF4834R_chr12530 lcl|XFF4834R_chr13180571_1419488_f3_XFF4834R-XFF4834R_chr12530

        
4

	
187

	
S=176 I=33 E=6.62631e-15

	

     	

   





    

        
                pubmed
        
        

        
3

	
274

	
S=548 I=45 E=9.47793e-58

	
Dihydrodipicolinate synthase ; Amino-acid biosynthesis Cytoplasm Diaminopimelate Lyase Lysine Schiff base

	
Pubmed 15277749

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
3

	
274

	
S=538 I=45 E=1.27377e-56

	
Dihydrodipicolinate synthase ; Amino-acid biosynthesis Cytoplasm Diaminopimelate Lyase Lysine Schiff base

	
Pubmed 11425723

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
3

	
274

	
S=529 I=47 E=1.61052e-55

	
Dihydrodipicolinate synthase EC=4.2.1.52 ; Amino-acid biosynthesis Cytoplasm Diaminopimelate Lyase Lysine Schiff base

	
Pubmed 19077236

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
3

	
274

	
S=516 I=41 E=6.84167e-54

	
Dihydrodipicolinate synthase EC=4.2.1.52 ; Amino-acid biosynthesis Cytoplasm Diaminopimelate Lyase Lysine Schiff base

	
Pubmed 3514578

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
3

	
274

	
S=512 I=42 E=1.93088e-53

	
Dihydrodipicolinate synthetas ; Amino-acid biosynthesis Cytoplasm Diaminopimelate Lyase Lysine Schiff base

	
Pubmed 16113328

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
3

	
274

	
S=501 I=40 E=4.45552e-52

	
Dihydrodipicolinate synthetase ; Amino-acid biosynthesis Cytoplasm Diaminopimelate Lyase Lysine Schiff base

	
Pubmed 3514578

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
1

	
274

	
S=495 I=39 E=2.548e-51

	
Dihydrodipicolinate synthase ; Amino-acid biosynthesis Cytoplasm Diaminopimelate Lyase Lysine Schiff base

	
Pubmed 19060158

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
2

	
274

	
S=478 I=40 E=2.31112e-49

	
Dihydrodipicolinate synthase EC=4.2.1.52 ; Lyase

	
Pubmed 16329940

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
1

	
274

	
S=469 I=39 E=2.87159e-48

	
Dihydrodipicolinate synthase EC=4.2.1.52 ; Amino-acid biosynthesis Cytoplasm Diaminopimelate Lyase Lysine Schiff base

	
Pubmed 8098035

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
3

	
270

	
S=460 I=33 E=3.72696e-47

	
Dihydrodipicolinate synthase EC=4.2.1.52 ; Amino-acid biosynthesis Cytoplasm Diaminopimelate Lyase Lysine Schiff base

	
Pubmed 17038625

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
1

	
302

	
S=1321 I=91 E=1.44372e-151

	
Dihydrodipicolinate synthase EC=4.2.1.52 ; Amino-acid biosynthesis Cytoplasm Diaminopimelate Lyase Lysine Schiff base

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
1

	
302

	
S=1293 I=84 E=3.12891e-148

	
Dihydrodipicolinate synthase EC=4.2.1.52 ; Amino-acid biosynthesis Cytoplasm Diaminopimelate Lyase Lysine Schiff base

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
1

	
302

	
S=1008 I=69 E=1.15451e-113

	
Dihydrodipicolinate synthase EC=4.2.1.52 ; Amino-acid biosynthesis Cytoplasm Diaminopimelate Lyase Lysine Schiff base

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
1

	
302

	
S=1007 I=69 E=1.43569e-113

	
Dihydrodipicolinate synthase EC=4.2.1.52 ; Amino-acid biosynthesis Cytoplasm Diaminopimelate Lyase Lysine Schiff base

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
1

	
274

	
S=955 I=72 E=3.02359e-107

	
Dihydrodipicolinate synthase EC=4.2.1.52 ; Amino-acid biosynthesis Cytoplasm Diaminopimelate Lyase Lysine Schiff base

	

    

    

         
        
prodomImg

    





    

        Iprscan
        IPR002220
	[PR00146]
	
36

	
57

	
	
Dihydrodipicolinate synthetase

    





    

        Iprscan
        IPR002220
	[PR00146]
	
72

	
90

	
	
Dihydrodipicolinate synthetase

    





    

        Iprscan
        IPR002220
	[PR00146]
	
104

	
120

	
	
Dihydrodipicolinate synthetase

    





    

        Iprscan
        IPR002220
	[PR00146]
	
129

	
146

	
	
Dihydrodipicolinate synthetase

    





    

        Iprscan
        IPR013785
	[G3DSA:3.20.20.70]
	
3

	
291

	
	
Aldolase-type TIM barrel

    





    

        Iprscan
        IPR002220
	[PTHR12128]
	
1

	
302

	
	
Dihydrodipicolinate synthetase

    





    

        Iprscan
        IPR002220
	[PF00701]
	
3

	
285

	
	
Dihydrodipicolinate synthetase

    





    

        Iprscan
        IPR005263
	[TIGR00674]
	
5

	
288

	
	
Dihydrodipicolinate synthase subfamily

    





    

        Iprscan
        
	[seg]
	
275

	
294

	
	
-

    





    

        
            
                
            
                
        
PD485872

        
129

	
190

	
S=177 I=58 E=5.11335e-14

    	
    





    

        
            
                
            
                
        
PD001859

        
5

	
79

	
S=146 I=45 E=3.07353e-10

    	
    





    

        
            
                
            
                
        
PD728475

        
72

	
130

	
S=121 I=47 E=3.77943e-07

    	
    





    

        
            
                
            
                
        
PD543043

        
72

	
163

	
S=114 I=40 E=2.08728e-06

    	
    





    

        
            
                
            
                
        
PDA874B8

        
191

	
217

	
S=114 I=96 E=2.25766e-06

    	
    





    

        
            
                
            
                
        
PDA0D1T3

        
36

	
214

	
S=111 I=27 E=5.25957e-06

    	
    





    

        
            
                
            
                
        
PDA8I6N7

        
127

	
274

	
S=103 I=31 E=5.34762e-05

    	
    





    

        Iprscan
        
	[SSF51569]
	
2

	
288

	
	
-

    




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                pubmed
            
        
	    
            
Set of Uniprot with relevant PubMed cross-references ncbi-blastp

        		
 	    
            104 hits
        
    

    

        
            
                swiss-prot
            
        
	    
            
Swiss-Prot ncbi-blastp

        		
 	    
            0 hits
        
    

    
    
    

        
            
                XFF4834R
            
        
    	
            
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp

        		        
        
            2 hits
        
    

        
    

        
            
                hamap
            
        
	
            
HAMAP scan

        		        
        
            0 hits
        
    

    
    

	    
            
                Interpro Scan
            
            
	        
                
IprScan

            		        
            
                10 hits
            
    








Show or not Miscellaneous analyses




    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetLocalBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBQTzunU/XFF4834R_chr27520.xml_fasta", "https://iant.toulouse.inra.fr/bacteria/annotation/web/img/XFF4834R.png"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    
    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetNcbiBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBQTzunU/XFF4834R_chr27520.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetUniprotBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBQTzunU/XFF4834R_chr27520.xml_fasta"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetKeggBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBQTzunU/XFF4834R_chr27520.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    •