8 hits
XFF4834R_chr04650 | trpE | XFF4834R_chr04650 | probable anthranilate synthase component I |
XFF4834R_chr04770 | trpG | XFF4834R_chr04770 | probable anthranilate synthase component II |
XFF4834R_chr04790 | trpD | XFF4834R_chr04790 | putative anthranilate phosphoribosyl transferase |
XFF4834R_chr04800 | trpC | XFF4834R_chr04800 | indole-3-glycerolphosphate synthetase |
XFF4834R_chr09420 | wrbA | XFF4834R_chr09420 | putative flavoprotein WrbA (Trp repressor binding protein) |
XFF4834R_chr27120 | trpA | XFF4834R_chr27120 | probable tryptophan synthase subunit alpha |
XFF4834R_chr27140 | trpB | XFF4834R_chr27140 | probable tryptophan synthase subunit beta |
XFF4834R_chr27160 | trpF | XFF4834R_chr27160 | probable N-(5'-phosphoribosyl)anthranilate isomerase |
![]() XFF4834R_chr_0515 |
![]() DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
![]() |
![]() |
![]() XFF4834R_chr04660 |
ID | trpE |
AC | XFF4834R_chr04650 |
LT | XFF4834R_chr04650 |
OR | XFF4834R_chr from 533041 to 534516 on strand + |
DE | probable anthranilate synthase component I |
IP | Anthranilate synthase component I; Anthranilate synthase, clad 3; Chorismate binding, C-terminal |
CL | 1.5.1.15 Tryptophan GO:0000162 |
EC | |
GO |
InterPro Biological Process: biosynthetic process (GO:0009058) Biological Process: tryptophan biosynthetic process (GO:0000162) Molecular Function: oxo-acid-lyase activity (GO:0016833) Molecular Function: anthranilate synthase activity (GO:0004049) Curated |
PM | |
AN | |
CC | COG: [EH] Amino acid transport and metabolism;Coenzyme transport and metabolism; |
CC | MODEL: acur |
CC | STATUS: curated by darrasse (20110304) |
MW | 54191 Da |
SQ | 491 aa |
........10........20........30........40........50 |
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XFF4834R_chr11230 lcl|XFF4834R_chr11690667_1255022_f3_XFF4834R-XFF4834R_chr11230 |
18 |
486 |
S=507 I=34 E=9.78424e-55 |
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NP_640831.1 lcl|trpE-XAC0476 |
1 |
491 |
S=2427 I=96 E=0 |
anthranilate synthase component I |
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YP_362236.1 lcl|trpE-XCV0505 |
1 |
491 |
S=2421 I=96 E=0 |
anthranilate synthase component I |
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NP_635853.1 lcl|trpE-XCC0459 |
1 |
491 |
S=2420 I=95 E=0 |
anthranilate synthase component I |
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1 |
491 |
S=1902 I=75 E=0 |
probable anthranilate synthase componentIprotein |
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NP_641467.1 lcl|trpE-XAC1130 |
18 |
486 |
S=527 I=34 E=1.4838e-56 |
hypothetical protein |
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YP_362880.1 lcl|trpE-XCV1149 |
20 |
486 |
S=524 I=34 E=3.14061e-56 |
hypothetical protein |
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230 |
484 |
S=499 I=44 E=3.69717e-53 |
putative anthranilate synthase componentIprotein |
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NP_636397.1 lcl|trpE-XCC1021 |
224 |
487 |
S=487 I=43 E=1.00683e-51 |
hypothetical protein |
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95 |
484 |
S=443 I=30 E=2.43986e-46 |
putative para-aminobenzoate synthase;albicidin synthetase protein |
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2 |
480 |
S=1411 I=57 E=4.03564e-162 |
Anthranilate synthase component 1 EC=4.1.3.27 ; Amino-acid biosynthesis Aromatic Lyase Tryptophan |
Pubmed 1987141 |
|
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2 |
489 |
S=1379 I=55 E=3.34923e-158 |
Anthranilate synthase component 1 EC=4.1.3.27 ; Amino-acid biosynthesis Aromatic Lyase Tryptophan |
Pubmed 2404959 |
|
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2 |
491 |
S=1364 I=56 E=2.20023e-156 |
Anthranilate synthase component 1 EC=4.1.3.27 ; Amino-acid biosynthesis Aromatic Lyase Tryptophan |
Pubmed 2105306 |
|
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1 |
491 |
S=1314 I=53 E=2.60628e-150 |
Anthranilate synthase component 1 EC=4.1.3.27 ; Amino-acid biosynthesis Aromatic Lyase Tryptophan |
Pubmed 10417653 |
|
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1 |
491 |
S=1307 I=53 E=1.93605e-149 |
Anthranilate synthase component 1 EC=4.1.3.27 ; Amino-acid biosynthesis Aromatic Lyase Tryptophan |
Pubmed 10417653 |
|
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2 |
491 |
S=1285 I=53 E=8.00557e-147 |
Anthranilate synthase component I |
Pubmed 12754231 |
|
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1 |
491 |
S=1266 I=53 E=1.78248e-144 |
Anthranilate synthase component 1 EC=4.1.3.27 ; Amino-acid biosynthesis Aromatic Lyase Tryptophan |
Pubmed 10417653 |
|
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1 |
491 |
S=1266 I=53 E=1.78248e-144 |
Anthranilate synthase component 1 EC=4.1.3.27 ; Amino-acid biosynthesis Aromatic Lyase Tryptophan |
Pubmed 10417653 |
|
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1 |
491 |
S=1193 I=48 E=1.06695e-135 |
Anthranilate synthase component 1 EC=4.1.3.27 ; Amino-acid biosynthesis Aromatic Lyase Tryptophan |
Pubmed 2338941 |
|
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2 |
491 |
S=1178 I=52 E=7.58133e-134 |
Anthranilate synthase component I EC=4.1.3.27 Anthranilate synthase large subunit EC=4.1.3.27 ; Lyase |
Pubmed 12694904 |
|
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2 |
480 |
S=1411 I=57 E=2.77616e-162 |
Anthranilate synthase component 1 EC=4.1.3.27 ; Amino-acid biosynthesis Aromatic Lyase Tryptophan |
||
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IPR005801 [G3DSA:3.60.120.10] | 11 |
484 |
ADC synthase |
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IPR006805 [PF04715] | 20 |
170 |
Anthranilate synthase component I, N-terminal |
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IPR015890 [PF00425] | 222 |
484 |
Chorismate binding, C-terminal |
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IPR005256 [TIGR00564] | 26 |
485 |
Anthranilate synthase component I |
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[seg] | 316 |
332 |
- |
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106 |
487 |
S=927 I=48 E=1.0674e-104 |
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117 |
171 |
S=221 I=67 E=3.14282e-19 |
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75 |
116 |
S=177 I=81 E=7.68274e-14 |
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117 |
147 |
S=170 I=97 E=4.51e-13 |
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169 |
214 |
S=166 I=67 E=1.74215e-12 |
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1 |
28 |
S=142 I=100 E=1.36137e-09 |
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21 |
175 |
S=135 I=29 E=9.76618e-09 |
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172 |
241 |
S=126 I=44 E=9.50611e-08 |
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29 |
69 |
S=126 I=61 E=1.17187e-07 |
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389 |
444 |
S=106 I=39 E=2.79772e-05 |
Access unfiltered results
Miscellaneous analyses
![]() XFF4834R_chr04760 |
![]() DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
![]() |
![]() |
![]() XFF4834R_chr04780 |
ID | trpG |
AC | XFF4834R_chr04770 |
LT | XFF4834R_chr04770 |
OR | XFF4834R_chr from 544145 to 544723 on strand + |
DE | probable anthranilate synthase component II |
IP | Glutamine amidotransferase class-I, C-terminal; Carbamoyl phosphate synthase, GATase region; Anthranilate synthase component II/delta crystallin; Glutamine amidotransferase of anthranilate synthase |
CL | 1.5.1.15 Tryptophan GO:0000162 |
EC | |
GO |
InterPro Biological Process: glutamine metabolic process (GO:0006541) Biological Process: biosynthetic process (GO:0009058) Biological Process: metabolic process (GO:0008152) Molecular Function: anthranilate synthase activity (GO:0004049) Molecular Function: catalytic activity (GO:0003824) Curated |
PM | |
AN | interpro domains and pubmed hit correspond to a probable anthranilate synthase component II, which is encoded by a trpG gene in Pseudomonas. In E. coli trpGD is a fused fused glutamine amidotransferase (component II) of anthranilate synthase -!- anthranilate phosphoribosyl transferase, furthermore the gene pabA shares high homology with XFF4834R_chr04770 but does not have the same function (aminodeoxychorismate synthase, subunit II). A comparison of the nucleotide and amino acid sequences of pabA and trp(G) D reveals extensive homology, suggesting that these two genes arose from a common ancestor. pabA and trp(G) D are 44% homologous at the amino acid level and 53% homologous at the nucleotide sequence level. The nucleotide sequences can be divided into regions of high homology, in which most nucleotide changes occur in the third position of codons and do not effect the amino acid sequence, and regions which show almost no DNA homology. Divergence in these non-homologous regions appears to have resulted from single-base substitutions as well as the rearrangement of small regions of DNA by inversion, deletion and duplication. |
CC | COG: [EH] Amino acid transport and metabolism;Coenzyme transport and metabolism; |
CC | MODEL: acur |
CC | STATUS: curated by darrasse (20120321) |
MW | 21102 Da |
SQ | 192 aa |
........10........20........30........40........50 |
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XFF4834R_chr20060 lcl|carA-XFF4834R_chr20060 |
8 |
176 |
S=142 I=28 E=5.69001e-11 |
carbamoyl phosphate synthetase small subunit, glutamine amidotransferase |
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XFF4834R_chr22900 lcl|guaA-XFF4834R_chr22900 |
2 |
190 |
S=123 I=26 E=9.66862e-09 |
GMP synthetase (glutamine aminotransferase) |
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XFF4834R_chr20060 lcl|carA-XFF4834R_chr20060 |
8 |
176 |
S=142 I=28 E=5.69001e-11 |
carbamoyl phosphate synthetase small subunit, glutamine amidotransferase |
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XFF4834R_chr22900 lcl|guaA-XFF4834R_chr22900 |
2 |
190 |
S=123 I=26 E=9.66862e-09 |
GMP synthetase (glutamine aminotransferase) |
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1 |
192 |
S=729 I=69 E=5.30408e-80 |
Anthranilate synthase component II EC=4.1.3.27 ; Amino-acid biosynthesis Aromatic Glutamine amidotransferase Lyase Tryptophan |
Pubmed 2105306 |
|
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1 |
192 |
S=706 I=66 E=3.05473e-77 |
Anthranilate synthase component II EC=4.1.3.27 ; Amino-acid biosynthesis Aromatic Glutamine amidotransferase Lyase Tryptophan |
||
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1 |
192 |
S=658 I=61 E=2.00007e-71 |
Para-aminobenzoate synthase glutamine amidotransferase component II EC=2.6.1.85 ; Folate biosynthesis |
||
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1 |
192 |
S=648 I=64 E=3.37188e-70 |
Glutamine amidotransferase |
||
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1 |
191 |
S=647 I=58 E=4.496e-70 |
Anthranilate synthase component 2 EC=4.1.3.27 ; Amino-acid biosynthesis Aromatic Glutamine amidotransferase Lyase Tryptophan |
Pubmed 6599977 |
|
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1 |
192 |
S=645 I=62 E=6.54103e-70 |
Para-aminobenzoate synthase glutamine amidotransferase component II EC=2.6.1.85 ; Folate biosynthesis |
Pubmed 3894673 |
|
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1 |
192 |
S=638 I=61 E=5.98989e-69 |
Para-aminobenzoate synthase glutamine amidotransferase component II EC=2.6.1.85 ; Folate biosynthesis |
||
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1 |
192 |
S=615 I=60 E=3.33146e-66 |
Para-aminobenzoate synthase glutamine amidotransferase component II EC=2.6.1.85 ; Folate biosynthesis |
Pubmed 3894673 |
|
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1 |
190 |
S=610 I=60 E=1.15906e-65 |
Anthranilate synthase component II |
Pubmed 10511537 |
|
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1 |
192 |
S=610 I=58 E=1.36788e-65 |
Anthranilate synthase component II |
Pubmed 12754231 |
|
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1 |
192 |
S=729 I=69 E=3.6768e-80 |
Anthranilate synthase component II EC=4.1.3.27 ; Amino-acid biosynthesis Aromatic Glutamine amidotransferase Lyase Tryptophan |
||
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1 |
192 |
S=706 I=66 E=2.11754e-77 |
Anthranilate synthase component II EC=4.1.3.27 ; Amino-acid biosynthesis Aromatic Glutamine amidotransferase Lyase Tryptophan |
||
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1 |
192 |
S=658 I=61 E=1.38645e-71 |
Para-aminobenzoate synthase glutamine amidotransferase component II EC=2.6.1.85 ; Folate biosynthesis |
||
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1 |
191 |
S=647 I=58 E=3.11664e-70 |
Anthranilate synthase component 2 EC=4.1.3.27 ; Amino-acid biosynthesis Aromatic Glutamine amidotransferase Lyase Tryptophan |
||
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1 |
192 |
S=645 I=62 E=4.53426e-70 |
Para-aminobenzoate synthase glutamine amidotransferase component II EC=2.6.1.85 ; Folate biosynthesis |
||
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IPR006220 [PR00097] | 2 |
16 |
Anthranilate synthase component II/delta crystallin |
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IPR006220 [PR00097] | 47 |
56 |
Anthranilate synthase component II/delta crystallin |
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IPR006220 [PR00097] | 74 |
85 |
Anthranilate synthase component II/delta crystallin |
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IPR006220 [PR00097] | 99 |
107 |
Anthranilate synthase component II/delta crystallin |
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IPR006220 [PR00097] | 119 |
131 |
Anthranilate synthase component II/delta crystallin |
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IPR006220 [PR00097] | 169 |
182 |
Anthranilate synthase component II/delta crystallin |
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IPR011702 [PR00096] | 47 |
56 |
Glutamine amidotransferase superfamily |
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IPR011702 [PR00096] | 74 |
85 |
Glutamine amidotransferase superfamily |
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IPR011702 [PR00096] | 169 |
182 |
Glutamine amidotransferase superfamily |
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IPR001317 [PR00099] | 44 |
58 |
Carbamoyl phosphate synthase, GATase domain |
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IPR001317 [PR00099] | 74 |
90 |
Carbamoyl phosphate synthase, GATase domain |
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[G3DSA:3.40.50.880] | 2 |
190 |
- |
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[PTHR11922] | 1 |
192 |
- |
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IPR000991 [PF00117] | 4 |
190 |
Glutamine amidotransferase class-I, C-terminal |
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IPR006221 [TIGR00566] | 1 |
192 |
Glutamine amidotransferase of anthranilate synthase |
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127 |
192 |
S=185 I=54 E=6.61442e-15 |
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74 |
133 |
S=173 I=51 E=1.81704e-13 |
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1 |
58 |
S=151 I=52 E=7.25593e-11 |
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28 |
63 |
S=145 I=69 E=4.11346e-10 |
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1 |
28 |
S=123 I=82 E=1.92173e-07 |
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105 |
131 |
S=109 I=74 E=9.88994e-06 |
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105 |
131 |
S=106 I=67 E=2.34454e-05 |
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109 |
147 |
S=102 I=49 E=6.50248e-05 |
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[SSF52317] | 1 |
191 |
- |
Access unfiltered results
Miscellaneous analyses
![]() XFF4834R_chr04780 |
![]() DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
![]() |
![]() |
![]() XFF4834R_chr04800 |
ID | trpD |
AC | XFF4834R_chr04790 |
LT | XFF4834R_chr04790 |
OR | XFF4834R_chr from 545614 to 546651 on strand + |
DE | putative anthranilate phosphoribosyl transferase |
IP | Anthranilate phosphoribosyl transferase; AMP phosphorylase |
CL | 1.5.1.15 Tryptophan GO:0000162 |
EC | |
GO |
InterPro Biological Process: tryptophan biosynthetic process (GO:0000162) Biological Process: metabolic process (GO:0008152) Molecular Function: anthranilate phosphoribosyltransferase activity (GO:0004048) transferring glycosyl groups (GO:0016757) Curated
|
PM | |
AN | |
CC | COG: [E] Amino acid transport and metabolism; |
CC | MODEL: XFF4834R |
CC | STATUS: curated by darrasse (20120319) |
MW | 36610.8 Da |
SQ | 345 aa |
........10........20........30........40........50 |
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TRPD_MF_00211 | raw_score=6670 norm_score=36.383 | Anthranilate phosphoribosyltransferase [trpD]. |
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NP_640835.1 lcl|trpD-XAC0480 |
1 |
345 |
S=1770 I=99 E=0 |
anthranilate phosphoribosyltransferase |
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YP_362247.1 lcl|trpD-XCV0516 |
1 |
344 |
S=1691 I=98 E=0 |
anthranilate phosphoribosyltransferase |
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NP_635863.1 lcl|trpD-XCC0469 |
1 |
344 |
S=1616 I=92 E=0 |
anthranilate phosphoribosyltransferase |
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1 |
341 |
S=1464 I=88 E=3.17322e-170 |
probable anthranilate phosphoribosyltransferase protein |
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1 |
341 |
S=1310 I=73 E=5.49786e-150 |
Anthranilate phosphoribosyltransferase EC=2.4.2.18 ; Amino-acid biosynthesis Aromatic Glycosyltransferase Tryptophan |
Pubmed 12754231 |
|
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8 |
338 |
S=745 I=48 E=1.26402e-81 |
Anthranilate phosphoribosyltransferase EC=2.4.2.18 ; Amino-acid biosynthesis Aromatic Glycosyltransferase Tryptophan |
Pubmed 2105306 |
|
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6 |
341 |
S=740 I=44 E=5.81291e-81 |
Anthranilate phosphoribosyltransferase EC=2.4.2.18 ; Amino-acid biosynthesis Aromatic Glycosyltransferase Tryptophan |
Pubmed 6599977 |
|
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6 |
339 |
S=727 I=44 E=1.96853e-79 |
Anthranilate phosphoribosyltransferase EC=2.4.2.18 ; Amino-acid biosynthesis Aromatic Glycosyltransferase Tryptophan |
Pubmed 17563350 |
|
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6 |
344 |
S=720 I=45 E=1.47511e-78 |
Anthranilate phosphoribosyltransferase EC=2.4.2.18 ; Amino-acid biosynthesis Aromatic Glycosyltransferase Tryptophan |
Pubmed 2404959 |
|
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17 |
339 |
S=671 I=45 E=1.19062e-72 |
Anthranilate phosphoribosyltransferase EC=2.4.2.18 ; Amino-acid biosynthesis Aromatic Glycosyltransferase Tryptophan |
Pubmed 9061023 |
|
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9 |
322 |
S=646 I=44 E=1.27343e-69 |
Anthranilate phosphoribosyltransferase EC=2.4.2.18 ; Amino-acid biosynthesis Aromatic Glycosyltransferase Tryptophan |
Pubmed 10369778 |
|
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9 |
332 |
S=632 I=42 E=7.46919e-68 |
Anthranilate phosphoribosyltransferase EC=2.4.2.18 ; Amino-acid biosynthesis Aromatic Glycosyltransferase Tryptophan |
||
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6 |
335 |
S=632 I=41 E=7.73428e-68 |
Anthranilate phosphoribosyltransferase EC=2.4.2.18 ; Amino-acid biosynthesis Aromatic Glycosyltransferase Tryptophan |
Pubmed 18391199 |
|
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6 |
324 |
S=627 I=44 E=2.64434e-67 |
Anthranilate phosphoribosyltransferase EC=2.4.2.18 ; Amino-acid biosynthesis Aromatic Glycosyltransferase Tryptophan |
Pubmed 2113923 |
|
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1 |
345 |
S=1770 I=99 E=0 |
Anthranilate phosphoribosyltransferase EC=2.4.2.18 ; Amino-acid biosynthesis Aromatic Glycosyltransferase Tryptophan |
||
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1 |
344 |
S=1691 I=98 E=0 |
Anthranilate phosphoribosyltransferase EC=2.4.2.18 ; Amino-acid biosynthesis Aromatic Glycosyltransferase Tryptophan |
||
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1 |
345 |
S=1652 I=95 E=0 |
Anthranilate phosphoribosyltransferase EC=2.4.2.18 ; Amino-acid biosynthesis Aromatic Glycosyltransferase Tryptophan |
||
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1 |
345 |
S=1652 I=95 E=0 |
Anthranilate phosphoribosyltransferase EC=2.4.2.18 ; Amino-acid biosynthesis Aromatic Glycosyltransferase Tryptophan |
||
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1 |
344 |
S=1616 I=92 E=0 |
Anthranilate phosphoribosyltransferase EC=2.4.2.18 ; Amino-acid biosynthesis Aromatic Glycosyltransferase Tryptophan |
||
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IPR000312 [G3DSA:3.40.1030.10] | 74 |
340 |
Glycosyl transferase, family 3 |
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IPR005940 [MF_00211] | 7 |
337 |
Anthranilate phosphoribosyl transferase |
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IPR017459 [PF02885] | 4 |
69 |
Glycosyl transferase, family 3, N-terminal |
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IPR000312 [PF00591] | 76 |
328 |
Glycosyl transferase, family 3 |
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IPR005940 [TIGR01245] | 9 |
337 |
Anthranilate phosphoribosyl transferase |
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79 |
344 |
S=556 I=49 E=7.58774e-60 |
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128 |
271 |
S=152 I=29 E=6.61744e-11 |
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15 |
73 |
S=138 I=53 E=2.76257e-09 |
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1 |
21 |
S=116 I=100 E=1.26831e-06 |
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267 |
341 |
S=113 I=38 E=3.57949e-06 |
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1 |
21 |
S=108 I=95 E=1.23454e-05 |
Access unfiltered results
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Set of Uniprot with relevant PubMed cross-references ncbi-blastp |
48 hits |
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Swiss-Prot ncbi-blastp |
0 hits |
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Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp |
0 hits |
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HAMAP scan |
1 hits |
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IprScan |
5 hits |
Miscellaneous analyses
![]() XFF4834R_chr04790 |
![]() DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
![]() |
![]() |
![]() XFF4834R_chr04810 |
ID | trpC |
AC | XFF4834R_chr04800 |
LT | XFF4834R_chr04800 |
OR | XFF4834R_chr from 546792 to 547589 on strand + |
DE | indole-3-glycerolphosphate synthetase |
IP | Aldolase-type TIM barrel; Indole-3-glycerol phosphate synthase |
CL | 1.5.1.15 Tryptophan GO:0000162 |
EC | |
GO |
InterPro Biological Process: metabolic process (GO:0008152) Biological Process: tryptophan metabolic process (GO:0006568) Molecular Function: indole-3-glycerol-phosphate synthase activity (GO:0004425) Molecular Function: catalytic activity (GO:0003824) Curated
|
PM | |
AN | |
CC | COG: [E] Amino acid transport and metabolism; |
CC | MODEL: XFF4834R |
CC | STATUS: curated by darrasse (20120319) |
MW | 28795.6 Da |
SQ | 265 aa |
........10........20........30........40........50 |
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NP_640836.1 trpC-XAC0481 |
1 |
265 |
S=1362 I=100 E=4.58561e-158 |
indole-3-glycerol-phosphate synthase |
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YP_362248.1 trpC-XCV0517 |
1 |
265 |
S=1357 I=100 E=1.65201e-157 |
indole-3-glycerol-phosphate synthase |
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NP_635864.1 trpC-XCC0470 |
1 |
265 |
S=1227 I=92 E=1.05411e-141 |
indole-3-glycerol-phosphate synthase |
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XALc_0283 trpC-XALc_0283 |
1 |
263 |
S=1071 I=80 E=8.34318e-123 |
probable indole-3-glycerol phosphate synthase protein |
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4 |
262 |
S=854 I=65 E=6.72241e-95 |
Indole-3-glycerol phosphate synthase EC=4.1.1.48 ; Amino-acid biosynthesis Aromatic Decarboxylase Lyase Tryptophan |
Pubmed 2105306 |
|
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4 |
262 |
S=849 I=65 E=2.76019e-94 |
Indole-3-glycerol phosphate synthase EC=4.1.1.48 ; Amino-acid biosynthesis Aromatic Decarboxylase Lyase Tryptophan |
Pubmed 2404959 |
|
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4 |
261 |
S=736 I=56 E=1.22322e-80 |
Putative indole-3-glycerol phosphate synthase ; Amino-acid biosynthesis Aromatic Decarboxylase Lyase Tryptophan |
Pubmed 19270136 |
|
![]() |
1 |
262 |
S=695 I=58 E=1.31755e-75 |
Indole-3-glycerol phosphate synthase ; Amino-acid biosynthesis Aromatic Decarboxylase Lyase Tryptophan |
Pubmed 12754231 |
|
![]() |
4 |
261 |
S=685 I=53 E=1.80185e-74 |
Indole-3-glycerol phosphate synthase EC=4.1.1.48 ; Amino-acid biosynthesis Aromatic Decarboxylase Lyase Tryptophan |
Pubmed 6599977 |
|
![]() |
1 |
265 |
S=1362 I=100 E=1.28078e-156 |
Indole-3-glycerol phosphate synthase EC=4.1.1.48 ; Amino-acid biosynthesis Aromatic Decarboxylase Lyase Tryptophan |
||
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1 |
265 |
S=1357 I=100 E=4.61416e-156 |
Indole-3-glycerol phosphate synthase EC=4.1.1.48 ; Amino-acid biosynthesis Aromatic Decarboxylase Lyase Tryptophan |
||
![]() |
1 |
265 |
S=1342 I=98 E=3.45472e-154 |
Indole-3-glycerol phosphate synthase EC=4.1.1.48 ; Amino-acid biosynthesis Aromatic Decarboxylase Lyase Tryptophan |
||
![]() |
1 |
265 |
S=1339 I=98 E=8.33392e-154 |
Indole-3-glycerol phosphate synthase EC=4.1.1.48 ; Amino-acid biosynthesis Aromatic Decarboxylase Lyase Tryptophan |
||
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1 |
265 |
S=1227 I=92 E=2.94418e-140 |
Indole-3-glycerol phosphate synthase EC=4.1.1.48 ; Amino-acid biosynthesis Aromatic Decarboxylase Lyase Tryptophan |
||
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IPR013785 [G3DSA:3.20.20.70] | 1 |
265 |
Aldolase-type TIM barrel |
![]() |
[PTHR22854:SF2] | 3 |
264 |
- |
![]() |
[PTHR22854] | 3 |
264 |
- |
![]() |
IPR013798 [PF00218] | 4 |
260 |
Indole-3-glycerol phosphate synthase |
![]() |
IPR001468 [PS00614] | 56 |
74 |
Indole-3-glycerol phosphate synthase, conserved site |
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17 |
208 |
S=549 I=61 E=5.29006e-59 |
![]() |
210 |
262 |
S=149 I=51 E=1.36122e-10 |
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1 |
103 |
S=149 I=41 E=1.60646e-10 |
![]() |
191 |
260 |
S=137 I=44 E=4.45174e-09 |
![]() |
191 |
260 |
S=132 I=39 E=1.76521e-08 |
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176 |
209 |
S=129 I=71 E=3.67167e-08 |
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1 |
36 |
S=109 I=64 E=9.07684e-06 |
![]() |
IPR011060 [SSF51366] | 11 |
265 |
Ribulose-phosphate binding barrel |
Access unfiltered results
Miscellaneous analyses
![]() XFF4834R_chr09410 |
![]() DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
![]() |
![]() |
![]() XFF4834R_chr09430 |
ID | wrbA |
AC | XFF4834R_chr09420 |
LT | XFF4834R_chr09420 |
OR | XFF4834R_chr from 1083593 to 1084189 on strand - |
DE | putative flavoprotein WrbA (Trp repressor binding protein) |
IP | Flavoprotein WrbA |
CL | 1.5.1.15 Tryptophan GO:0000162 |
EC | |
GO |
InterPro Biological Process: negative regulation of transcription (GO:0016481) Molecular Function: FMN binding (GO:0010181) Molecular Function: oxidoreductase activity (GO:0016491) Curated |
PM | |
AN | |
CC | COG: [R] General function prediction only; |
CC | MODEL: XFF4834R |
CC | STATUS: curated by pieretti (20100504) |
MW | 20343 Da |
SQ | 198 aa |
........10........20........30........40........50 |
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XFF4834R_chr36060 lcl|XFF4834R_chr39210420_4175989_f2_XFF4834R-XFF4834R_chr36060 |
1 |
141 |
S=99 I=26 E=9.10001e-06 |
![]() |
XFF4834R_chr36060 lcl|XFF4834R_chr39210420_4175989_f2_XFF4834R-XFF4834R_chr36060 |
1 |
141 |
S=99 I=26 E=9.10001e-06 |
![]() |
NP_641288.1 lcl|XAC0936-XAC0936 |
1 |
198 |
S=945 I=93 E=1.14629e-107 |
tryptophan repressor binding protein |
![]() |
YP_362698.1 lcl|wrbA-XCV0967 |
1 |
198 |
S=937 I=92 E=1.0497e-106 |
flavoprotein WrbA (Trp repressor binding protein) |
![]() |
NP_636250.1 lcl|XCC0859 |
1 |
198 |
S=908 I=89 E=3.22431e-103 |
tryptophan repressor binding protein |
![]() |
1 |
196 |
S=793 I=80 E=3.02441e-89 |
probable flavoprotein wrba (trp repressor binding protein) |
![]() |
NP_642549.1 lcl|XAC2232-XAC2232 |
2 |
177 |
S=160 I=31 E=1.44928e-12 |
repressor binding protein |
![]() |
66 |
141 |
S=104 I=32 E=7.17289e-06 |
putative flavodoxin protein |
![]() |
NP_644016.2 lcl|wrbA-XAC3709 |
1 |
141 |
S=101 I=26 E=1.93801e-05 |
tryptophan repressor binding protein |
![]() |
YP_365560.1 lcl|XCV3829 |
1 |
141 |
S=99 I=26 E=2.99696e-05 |
flavodoxin |
![]() |
NP_639014.2 lcl|wrbA-XCC3668 |
1 |
141 |
S=97 I=27 E=5.66365e-05 |
tryptophan repressor binding protein |
![]() |
1 |
196 |
S=718 I=75 E=1.18903e-78 |
WrbA |
Pubmed 19218412 |
|
![]() |
1 |
196 |
S=709 I=74 E=1.47738e-77 |
WrbA |
Pubmed 19218412 |
|
![]() |
4 |
177 |
S=540 I=60 E=4.79723e-57 |
Trp repressor binding protein |
Pubmed 18194518 |
|
![]() |
3 |
197 |
S=396 I=44 E=1.0276e-39 |
Para-benzoquinone reductase |
Pubmed 19218392 |
|
![]() |
1 |
195 |
S=380 I=43 E=9.00122e-38 |
Flavoprotein wrbA ; FMN |
Pubmed 19077236 |
|
![]() |
1 |
192 |
S=341 I=41 E=5.40593e-33 |
Flavoprotein wrbA 3 ; FMN Plasmid |
Pubmed 11481432 |
|
![]() |
3 |
195 |
S=339 I=41 E=8.3598e-33 |
Quinone reductase 2 |
Pubmed 16079999 |
|
![]() |
1 |
195 |
S=331 I=35 E=8.80141e-32 |
AGG4 Flagellar flavodoxin ; Flagellum |
Pubmed 16753570 |
|
![]() |
3 |
195 |
S=330 I=38 E=1.29169e-31 |
Quinone-oxidoreductase QR2 |
Pubmed 11260494 |
|
![]() |
1 |
195 |
S=330 I=39 E=1.32592e-31 |
Putative flavoprotein wrbA ; Acetylation FMN |
Pubmed 10734605 |
|
![]() |
1 |
196 |
S=428 I=45 E=1.13822e-43 |
Flavoprotein wrbA ; FMN |
||
![]() |
1 |
197 |
S=422 I=44 E=5.32643e-43 |
Flavoprotein wrbA ; FMN |
||
![]() |
1 |
197 |
S=419 I=44 E=1.18794e-42 |
Flavoprotein wrbA ; FMN |
||
![]() |
1 |
197 |
S=419 I=44 E=1.50325e-42 |
Flavoprotein wrbA ; FMN |
||
![]() |
1 |
197 |
S=418 I=44 E=1.72828e-42 |
Flavoprotein wrbA ; FMN |
||
![]() |
81 |
140 |
S=184 I=64 E=9.02873e-15 |
![]() |
36 |
80 |
S=152 I=64 E=6.74872e-11 |
![]() |
79 |
103 |
S=134 I=100 E=9.3839e-09 |
![]() |
3 |
58 |
S=132 I=52 E=1.65389e-08 |
![]() |
130 |
154 |
S=116 I=92 E=1.2383e-06 |
![]() |
144 |
195 |
S=115 I=44 E=1.98288e-06 |
Access unfiltered results
Miscellaneous analyses
![]() XFF4834R_chr27110 |
![]() DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
![]() |
![]() |
![]() XFF4834R_chr27130 |
ID | trpA |
AC | XFF4834R_chr27120 |
LT | XFF4834R_chr27120 |
OR | XFF4834R_chr from 3126433 to 3127239 on strand - |
DE | probable tryptophan synthase subunit alpha |
IP | Ribulose-phosphate binding barrel |
CL | 1.5.1.15 Tryptophan GO:0000162 |
EC | |
GO |
InterPro Biological Process: tryptophan metabolic process (GO:0006568) Biological Process: metabolic process (GO:0008152) Molecular Function: tryptophan synthase activity (GO:0004834) Molecular Function: catalytic activity (GO:0003824) Curated |
PM | |
AN | |
CC | COG: [E] Amino acid transport and metabolism; |
CC | MODEL: XFF4834R |
CC | STATUS: curated by darrasse (20120404) |
MW | 27995.5 Da |
SQ | 268 aa |
........10........20........30........40........50 |
![]() |
1 |
216 |
S=524 I=50 E=5.53188e-55 |
Tryptophan synthase alpha chain EC=4.2.1.20 ; Amino-acid biosynthesis Aromatic Lyase |
Pubmed 19077236 |
|
![]() |
1 |
216 |
S=509 I=52 E=3.38925e-53 |
Tryptophan synthase alpha chain EC=4.2.1.20 ; Amino-acid biosynthesis Aromatic Lyase |
Pubmed 12754231 |
|
![]() |
3 |
216 |
S=469 I=46 E=2.62109e-48 |
Tryptophan synthase alpha chain EC=4.2.1.20 ; Amino-acid biosynthesis Aromatic Lyase |
Pubmed 18700039 |
|
![]() |
1 |
216 |
S=449 I=44 E=8.05777e-46 |
Tryptophan synthase alpha chain EC=4.2.1.20 ; Amino-acid biosynthesis Aromatic Lyase |
Pubmed 2503057 |
|
![]() |
3 |
216 |
S=448 I=46 E=1.0108e-45 |
Tryptophan synthase alpha chain EC=4.2.1.20 ; Amino-acid biosynthesis Aromatic Lyase |
Pubmed 11092742 |
|
![]() |
3 |
216 |
S=442 I=42 E=5.16108e-45 |
Tryptophan synthase alpha chain EC=4.2.1.20 ; Amino-acid biosynthesis Aromatic Lyase |
Pubmed 15547262 |
|
![]() |
3 |
216 |
S=432 I=44 E=7.56805e-44 |
Tryptophan synthase alpha chain EC=4.2.1.20 ; Amino-acid biosynthesis Aromatic Lyase |
Pubmed 2828322 |
|
![]() |
1 |
215 |
S=432 I=44 E=9.41124e-44 |
Tryptophan synthase alpha chain EC=4.2.1.20 ; Amino-acid biosynthesis Aromatic Lyase |
Pubmed 10511537 |
|
![]() |
1 |
216 |
S=426 I=42 E=4.48158e-43 |
Tryptophan synthase alpha chain EC=4.2.1.20 ; Amino-acid biosynthesis Aromatic Lyase |
Pubmed 3127651 |
|
![]() |
1 |
216 |
S=413 I=40 E=1.74487e-41 |
Tryptophan synthase alpha chain EC=4.2.1.20 ; Amino-acid biosynthesis Aromatic Lyase |
Pubmed 8423001 |
|
![]() |
1 |
267 |
S=1106 I=83 E=1.23548e-125 |
Tryptophan synthase alpha chain EC=4.2.1.20 ; Amino-acid biosynthesis Aromatic Lyase |
||
![]() |
1 |
268 |
S=1098 I=82 E=1.17154e-124 |
Tryptophan synthase alpha chain EC=4.2.1.20 ; Amino-acid biosynthesis Aromatic Lyase |
||
![]() |
1 |
267 |
S=1062 I=81 E=2.91667e-120 |
Tryptophan synthase alpha chain EC=4.2.1.20 ; Amino-acid biosynthesis Aromatic Lyase |
||
![]() |
1 |
267 |
S=1062 I=81 E=2.91667e-120 |
Tryptophan synthase alpha chain EC=4.2.1.20 ; Amino-acid biosynthesis Aromatic Lyase |
||
![]() |
1 |
267 |
S=1056 I=81 E=1.35305e-119 |
Tryptophan synthase alpha chain EC=4.2.1.20 ; Amino-acid biosynthesis Aromatic Lyase |
||
![]() |
IPR013785 [G3DSA:3.20.20.70] | 1 |
267 |
Aldolase-type TIM barrel |
![]() |
[PTHR10314:SF4] | 54 |
251 |
- |
![]() |
[PTHR10314] | 54 |
251 |
- |
![]() |
IPR002028 [PF00290] | 8 |
249 |
Tryptophan synthase, alpha chain |
![]() |
IPR002028 [TIGR00262] | 8 |
262 |
Tryptophan synthase, alpha chain |
![]() |
[seg] | 117 |
131 |
- |
![]() |
[seg] | 217 |
244 |
- |
![]() |
2 |
112 |
S=380 I=63 E=1.40348e-38 |
![]() |
179 |
267 |
S=267 I=66 E=8.43917e-25 |
![]() |
IPR011060 [SSF51366] | 1 |
266 |
Ribulose-phosphate binding barrel |
Access unfiltered results
Miscellaneous analyses
![]() XFF4834R_chr27130 |
![]() DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
![]() |
![]() |
![]() XFF4834R_chr27150 |
ID | trpB |
AC | XFF4834R_chr27140 |
LT | XFF4834R_chr27140 |
OR | XFF4834R_chr from 3127708 to 3128925 on strand - |
DE | probable tryptophan synthase subunit beta |
IP | Pyridoxal phosphate-dependent enzyme, beta subunit |
CL | 1.5.1.15 Tryptophan GO:0000162 |
EC | |
GO |
InterPro Biological Process: metabolic process (GO:0008152) Biological Process: tryptophan metabolic process (GO:0006568) Molecular Function: catalytic activity (GO:0003824) Molecular Function: pyridoxal phosphate binding (GO:0030170) Molecular Function: tryptophan synthase activity (GO:0004834) Curated |
PM | |
AN | |
CC | COG: [E] Amino acid transport and metabolism; |
CC | MODEL: XFF4834R |
CC | STATUS: curated by darrasse (20120404) |
MW | 43192.3 Da |
SQ | 405 aa |
........10........20........30........40........50 |
![]() |
XFF4834R_chr11930 lcl|tdcB-XFF4834R_chr11930 |
59 |
145 |
S=99 I=30 E=2.41826e-05 |
catabolic threonine dehydratase, PLP-dependent |
![]() |
XFF4834R_chr11930 lcl|tdcB-XFF4834R_chr11930 |
59 |
145 |
S=99 I=30 E=2.41826e-05 |
catabolic threonine dehydratase, PLP-dependent |
![]() |
9 |
405 |
S=1482 I=69 E=8.72187e-171 |
Tryptophan synthase beta chain ; Amino-acid biosynthesis Aromatic Lyase Pyridoxal phosphate |
Pubmed 12754231 |
|
![]() |
8 |
405 |
S=1435 I=66 E=3.72514e-165 |
Tryptophan synthase beta chain EC=4.2.1.20 ; Amino-acid biosynthesis Aromatic Lyase Pyridoxal phosphate |
||
![]() |
10 |
405 |
S=1434 I=67 E=5.81105e-165 |
Tryptophan synthase beta chain EC=4.2.1.20 ; Amino-acid biosynthesis Aromatic Lyase Pyridoxal phosphate |
Pubmed 19077236 |
|
![]() |
7 |
402 |
S=1430 I=68 E=1.61167e-164 |
Tryptophan synthase beta chain EC=4.2.1.20 ; Amino-acid biosynthesis Aromatic Lyase Pyridoxal phosphate |
Pubmed 18700039 |
|
![]() |
4 |
397 |
S=1382 I=65 E=1.06447e-158 |
Tryptophan synthase beta chain EC=4.2.1.20 ; Amino-acid biosynthesis Aromatic Lyase Pyridoxal phosphate |
Pubmed 8423001 |
|
![]() |
13 |
397 |
S=1377 I=65 E=3.93649e-158 |
Tryptophan synthase beta chain EC=4.2.1.20 ; Amino-acid biosynthesis Aromatic Lyase Pyridoxal phosphate |
Pubmed 3127651 |
|
![]() |
7 |
397 |
S=1365 I=63 E=1.12957e-156 |
Tryptophan synthase beta chain EC=4.2.1.20 ; Amino-acid biosynthesis Aromatic Lyase Pyridoxal phosphate |
Pubmed 2503057 |
|
![]() |
7 |
405 |
S=1362 I=64 E=2.79711e-156 |
TrpB EC=4.2.1.20 ; Amino-acid biosynthesis Aromatic Lyase Pyridoxal phosphate Tryptophan |
Pubmed 15547262 |
|
![]() |
13 |
405 |
S=1350 I=65 E=7.61721e-155 |
Tryptophan synthase beta subunit ; Amino-acid biosynthesis Aromatic Lyase Pyridoxal phosphate |
Pubmed 11092742 |
|
![]() |
7 |
405 |
S=1348 I=63 E=1.28525e-154 |
Tryptophan synthase beta chain EC=4.2.1.20 ; Amino-acid biosynthesis Aromatic Lyase Pyridoxal phosphate |
Pubmed 10517032 |
|
![]() |
1 |
405 |
S=2133 I=100 E=0 |
Tryptophan synthase beta chain EC=4.2.1.20 ; Amino-acid biosynthesis Aromatic Lyase Pyridoxal phosphate |
||
![]() |
1 |
405 |
S=2130 I=100 E=0 |
Tryptophan synthase beta chain EC=4.2.1.20 ; Amino-acid biosynthesis Aromatic Lyase Pyridoxal phosphate |
||
![]() |
1 |
405 |
S=2112 I=99 E=0 |
Tryptophan synthase beta chain EC=4.2.1.20 ; Amino-acid biosynthesis Aromatic Lyase Pyridoxal phosphate |
||
![]() |
1 |
405 |
S=2109 I=98 E=0 |
Tryptophan synthase beta chain EC=4.2.1.20 ; Amino-acid biosynthesis Aromatic Lyase Pyridoxal phosphate |
||
![]() |
1 |
405 |
S=2057 I=95 E=0 |
Tryptophan synthase beta chain EC=4.2.1.20 ; Amino-acid biosynthesis Aromatic Lyase Pyridoxal phosphate |
||
![]() |
[G3DSA:3.40.50.1100] | 184 |
398 |
- |
![]() |
[PTHR10314:SF3] | 26 |
400 |
- |
![]() |
[PTHR10314] | 26 |
400 |
- |
![]() |
IPR001926 [PF00291] | 64 |
388 |
Pyridoxal phosphate-dependent enzyme, beta subunit |
![]() |
IPR006654 [TIGR00263] | 17 |
401 |
Tryptophan synthase, beta chain |
![]() |
IPR006653 [PS00168] | 91 |
105 |
Tryptophan synthase, beta chain, conserved site |
![]() |
315 |
388 |
S=238 I=60 E=2.59691e-21 |
![]() |
116 |
173 |
S=161 I=71 E=4.87088e-12 |
![]() |
272 |
314 |
S=161 I=70 E=5.13247e-12 |
![]() |
207 |
289 |
S=157 I=46 E=1.47399e-11 |
![]() |
77 |
114 |
S=152 I=79 E=6.37715e-11 |
![]() |
117 |
205 |
S=149 I=38 E=1.23709e-10 |
![]() |
176 |
205 |
S=135 I=83 E=7.25602e-09 |
![]() |
18 |
76 |
S=127 I=54 E=5.98457e-08 |
![]() |
46 |
80 |
S=102 I=51 E=6.74459e-05 |