3 hits
XFF4834R_chr13080 | cysK | XFF4834R_chr13080 | cysteine synthase |
XFF4834R_chr15680 | cysQ | XFF4834R_chr15680 | probable PAPS (adenosine 3'-phosphate 5'-phosphosulfate) 3'(2'),5'-bisphosphate nucleotidase |
XFF4834R_chr34970 | XFF4834R_chr38160942_4061312_r2_XFF4834R-XFF4834R_chr34970 | XFF4834R_chr34970 | putative cystathionine beta-synthase |
![]() XFF4834R_chr13070 |
![]() DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
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![]() XFF4834R_chr13090 |
ID | cysK |
AC | XFF4834R_chr13080 |
LT | XFF4834R_chr13080 |
OR | XFF4834R_chr from 1489618 to 1490577 on strand - |
DE | cysteine synthase |
IP | Pyridoxal phosphate-dependent enzyme, beta subunit |
CL | 1.5.1.12 Cysteine GO:0019344 |
EC | |
GO |
InterPro Biological Process: metabolic process (GO:0008152) Biological Process: cysteine biosynthetic process from serine (GO:0006535) Molecular Function: pyridoxal phosphate binding (GO:0030170) Molecular Function: catalytic activity (GO:0003824) Molecular Function: cysteine synthase activity (GO:0004124) Curated
|
PM | |
AN | |
CC | COG: [E] Amino acid transport and metabolism; |
CC | MODEL: XFF4834R |
CC | STATUS: curated by darrasse (20120330) |
MW | 34099.6 Da |
SQ | 319 aa |
........10........20........30........40........50 |
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XFF4834R_chr34970 lcl|XFF4834R_chr38160942_4061312_r2_XFF4834R-XFF4834R_chr34970 |
1 |
299 |
S=435 I=34 E=3.35999e-46 |
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XFF4834R_chr35240 lcl|XFF4834R_chr38460231_4094334_r1_XFF4834R-XFF4834R_chr35240 |
27 |
165 |
S=150 I=31 E=1.11662e-11 |
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NP_643648.1 lcl|cysK-XAC3341 |
1 |
319 |
S=1539 I=93 E=1.80291e-179 |
cysteine synthase |
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YP_365190.1 lcl|cysK-XCV3459 |
1 |
319 |
S=1522 I=92 E=2.44217e-177 |
cysteine synthase |
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NP_638528.1 lcl|cysK-XCC3182 |
1 |
319 |
S=1510 I=91 E=5.98996e-176 |
cysteine synthase |
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1 |
319 |
S=1381 I=83 E=2.96816e-160 |
probable cysteine synthase protein |
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1 |
299 |
S=440 I=35 E=3.07567e-46 |
probable cystathionine beta-synthase protein |
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NP_635989.1 lcl|cysB-XCC0597 |
1 |
299 |
S=437 I=35 E=6.23227e-46 |
cystathionine beta-synthase |
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NP_643910.1 lcl|cysB-XAC3603 |
1 |
299 |
S=430 I=34 E=4.35549e-45 |
cystathionine beta-synthase |
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YP_365457.1 lcl|XCV3726 |
1 |
299 |
S=428 I=34 E=7.67644e-45 |
cystathionine beta-synthase |
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14 |
164 |
S=156 I=33 E=7.27499e-12 |
probable cysteine synthase protein |
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YP_365476.1 lcl|XCV3745 |
27 |
165 |
S=151 I=32 E=3.37487e-11 |
putative cysteine synthase |
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3 |
316 |
S=818 I=54 E=1.82671e-90 |
Cysteine synthetase |
Pubmed 18385218 |
|
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2 |
313 |
S=806 I=51 E=4.76236e-89 |
Chloroplast O-acetyl-serine lyase |
Pubmed 16490209 |
|
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3 |
315 |
S=797 I=53 E=6.45635e-88 |
Chloroplast O-acetyl-serine lyase |
Pubmed 16490209 |
|
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4 |
306 |
S=767 I=52 E=2.64431e-84 |
Chloroplast O-acetyl-serine lyase/glutaredoxin fusion protein |
Pubmed 16490209 |
|
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5 |
303 |
S=710 I=48 E=1.95449e-77 |
Cysteine synthase EC=2.5.1.47 ; Amino-acid biosynthesis Pyridoxal phosphate Transferase |
Pubmed 7584024 |
|
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1 |
303 |
S=705 I=45 E=8.8328e-77 |
Cysteine synthase EC=2.5.1.47 ; Amino-acid biosynthesis Lyase Transferase |
Pubmed 10568807 |
|
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1 |
306 |
S=671 I=46 E=1.08523e-72 |
Probable cysteine synthase EC=2.5.1.47 ; Amino-acid biosynthesis Pyridoxal phosphate Transferase |
Pubmed 9387221 |
|
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5 |
303 |
S=658 I=47 E=4.49119e-71 |
Cysteine synthase EC=2.5.1.47 ; Amino-acid biosynthesis Transferase |
Pubmed 11685509 |
|
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5 |
303 |
S=653 I=48 E=1.89293e-70 |
Cysteine synthase EC=2.5.1.47 ; Amino-acid biosynthesis Transferase |
Pubmed 16233442 |
|
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3 |
305 |
S=647 I=43 E=8.26141e-70 |
Cysteine synthase EC=2.5.1.47 ; Amino-acid biosynthesis Transferase |
Pubmed 10085076 |
|
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[G3DSA:3.40.50.1100] | 116 |
299 |
- |
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IPR001926 [PF00291] | 7 |
292 |
Pyridoxal phosphate-dependent enzyme, beta subunit |
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IPR005856 [TIGR01136] | 7 |
303 |
Cysteine synthase K/M |
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IPR005859 [TIGR01139] | 7 |
303 |
Cysteine synthase A |
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IPR001216 [PS00901] | 32 |
50 |
Cysteine synthase/cystathionine beta-synthase P-phosphate-binding site |
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[seg] | 173 |
191 |
- |
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1 |
63 |
S=192 I=56 E=9.97604e-16 |
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99 |
131 |
S=158 I=97 E=1.2692e-11 |
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14 |
267 |
S=143 I=26 E=7.06494e-10 |
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28 |
98 |
S=120 I=38 E=5.28525e-07 |
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64 |
98 |
S=119 I=69 E=5.97141e-07 |
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99 |
127 |
S=110 I=72 E=8.38278e-06 |
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65 |
116 |
S=105 I=46 E=2.84118e-05 |
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4 |
160 |
S=105 I=27 E=2.86606e-05 |
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66 |
117 |
S=102 I=40 E=7.60981e-05 |
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194 |
247 |
S=101 I=42 E=8.30307e-05 |
Access unfiltered results
Miscellaneous analyses
![]() XFF4834R_chr15670 |
![]() DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
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![]() XFF4834R_chr15690 |
ID | cysQ |
AC | XFF4834R_chr15680 |
LT | XFF4834R_chr15680 |
OR | XFF4834R_chr from 1816019 to 1816819 on strand + |
DE | probable PAPS (adenosine 3'-phosphate 5'-phosphosulfate) 3'(2'),5'-bisphosphate nucleotidase |
IP | Inositol monophosphatase |
CL | 1.5.1.12 Cysteine GO:0019344 |
EC | |
GO |
InterPro Cellular Component: membrane (GO:0016020) Molecular Function: magnesium ion binding (GO:0000287) Molecular Function: inositol or phosphatidylinositol phosphatase activity (GO:0004437) Curated |
PM | |
AN | description of this gene in other Xanthomonas genomes is apparently inconsistent with this one, despite high homology |
CC | COG: [P] Inorganic ion transport and metabolism; |
CC | MODEL: XFF4834R |
CC | STATUS: curated by lgagnevin (20100717) |
MW | 29339.9 Da |
SQ | 266 aa |
........10........20........30........40........50 |
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XFF4834R_chr23960 lcl|suhB-XFF4834R_chr23960 |
43 |
218 |
S=152 I=30 E=5.58848e-12 |
inositol monophosphatase |
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YP_364931.1 lcl|cysQ-XCV3200 |
1 |
266 |
S=1301 I=94 E=1.15483e-150 |
sulfite synthesis pathway protein |
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NP_643375.2 lcl|cysQ-XAC3066 |
1 |
266 |
S=1293 I=94 E=1.02128e-149 |
sulfite synthesis pathway protein |
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NP_638230.2 lcl|cysQ-XCC2882 |
1 |
265 |
S=1245 I=90 E=6.74534e-144 |
sulfite synthesis pathway protein |
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1 |
264 |
S=956 I=72 E=7.53173e-109 |
putative sulfite synthesis pathway protein |
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31 |
218 |
S=155 I=31 E=7.71175e-12 |
probable inositol monophosphatase protein |
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YP_364313.1 lcl|suhB-XCV2582 |
43 |
218 |
S=152 I=30 E=2.0836e-11 |
myo-inositol-1(or 4)-monophosphatase |
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NP_642701.1 lcl|suhB-XAC2385 |
43 |
218 |
S=152 I=30 E=2.0836e-11 |
extragenic supressor protein SuhB |
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NP_637632.1 lcl|suhB-XCC2277 |
43 |
218 |
S=152 I=30 E=2.12025e-11 |
extragenic supressor protein |
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8 |
215 |
S=536 I=54 E=2.15856e-56 |
3'(2'),5'-bisphosphate nucleotidase cysQ EC=3.1.3.7 ; Cell inner membrane Cytoplasm Hydrolase Magnesium Metal-binding |
Pubmed 2172762 |
|
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8 |
251 |
S=531 I=49 E=8.86293e-56 |
3'(2'),5'-bisphosphate nucleotidase cysQ EC=3.1.3.7 ; Cell inner membrane Cytoplasm Hydrolase Magnesium Metal-binding |
||
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4 |
261 |
S=446 I=35 E=1.63227e-45 |
3'(2'),5'-bisphosphate nucleotidase cysQ EC=3.1.3.7 ; Cell inner membrane Cytoplasm Hydrolase Magnesium Metal-binding |
Pubmed 9020051 |
|
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7 |
265 |
S=442 I=40 E=5.93192e-45 |
3'(2'),5'-bisphosphate nucleotidase EC=3.1.3.25 EC=3.1.3.7 CysQ ; Hydrolase |
Pubmed 12438347 |
|
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15 |
253 |
S=439 I=40 E=1.35804e-44 |
3-phosphoadenosine-5-phosphosulfate PAPS-3 phosphatase |
Pubmed 18028413 |
|
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8 |
215 |
S=536 I=54 E=1.48654e-56 |
3'(2'),5'-bisphosphate nucleotidase cysQ EC=3.1.3.7 ; Cell inner membrane Cytoplasm Hydrolase Magnesium Metal-binding |
||
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8 |
251 |
S=534 I=49 E=2.96012e-56 |
3'(2'),5'-bisphosphate nucleotidase cysQ EC=3.1.3.7 ; Cell inner membrane Cytoplasm Hydrolase Magnesium Metal-binding |
||
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8 |
251 |
S=531 I=49 E=6.10364e-56 |
3'(2'),5'-bisphosphate nucleotidase cysQ EC=3.1.3.7 ; Cell inner membrane Cytoplasm Hydrolase Magnesium Metal-binding |
||
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8 |
251 |
S=530 I=49 E=8.20976e-56 |
3'(2'),5'-bisphosphate nucleotidase cysQ EC=3.1.3.7 ; Cell inner membrane Cytoplasm Hydrolase Magnesium Metal-binding |
||
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8 |
251 |
S=528 I=48 E=1.55148e-55 |
3'(2'),5'-bisphosphate nucleotidase cysQ EC=3.1.3.7 ; Cell inner membrane Cytoplasm Hydrolase Magnesium Metal-binding |
||
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IPR000760 [PR00377] | 40 |
60 |
Inositol monophosphatase |
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IPR000760 [PR00377] | 62 |
78 |
Inositol monophosphatase |
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IPR000760 [PR00377] | 86 |
102 |
Inositol monophosphatase |
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[G3DSA:3.30.540.10] | 7 |
152 |
- |
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[PTHR20854:SF5] | 62 |
259 |
- |
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IPR000760 [PTHR20854] | 62 |
259 |
Inositol monophosphatase |
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IPR000760 [PF00459] | 8 |
247 |
Inositol monophosphatase |
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IPR006240 [TIGR01331] | 8 |
255 |
3(2),5 -bisphosphate nucleotidase, bacterial |
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IPR020583 [PS00629] | 86 |
99 |
Inositol monophosphatase, metal-binding site |
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IPR020550 [PS00630] | 213 |
227 |
Inositol monophosphatase, conserved site |
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[seg] | 222 |
235 |
- |
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236 |
266 |
S=176 I=100 E=7.92103e-14 |
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165 |
214 |
S=165 I=62 E=1.58979e-12 |
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137 |
187 |
S=152 I=61 E=6.52215e-11 |
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85 |
139 |
S=144 I=49 E=5.76789e-10 |
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137 |
165 |
S=142 I=97 E=1.04352e-09 |
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1 |
28 |
S=126 I=96 E=9.63153e-08 |
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7 |
73 |
S=124 I=40 E=1.65371e-07 |
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137 |
160 |
S=115 I=88 E=2.22248e-06 |
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42 |
82 |
S=106 I=41 E=2.48713e-05 |
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[SSF56655] | 5 |
265 |
- |
Access unfiltered results
Miscellaneous analyses
![]() XFF4834R_chr34970 |
![]() DrawMap |
XML file
FASTA file |
Extract Sequence |
Codon Usage |
![]() |
![]() |
![]() XFF4834R_chr_3715 |
ID | XFF4834R_chr38160942_4061312_r2_XFF4834R-XFF4834R_chr34970 |
AC | XFF4834R_chr34970 |
LT | XFF4834R_chr34970 |
OR | XFF4834R_chr from 4059942 to 4061312 on strand - |
DE | putative cystathionine beta-synthase |
IP | Cystathionine beta-synthase |
CL | 1.5.1.12 Cysteine GO:0019344 |
EC | |
GO |
InterPro Biological Process: cysteine biosynthetic process from serine (GO:0006535) Biological Process: metabolic process (GO:0008152) Molecular Function: pyridoxal phosphate binding (GO:0030170) Molecular Function: catalytic activity (GO:0003824) Curated |
PM | |
AN | gene is named uptG in Xcc |
CC | COG: [E] Amino acid transport and metabolism; |
CC | MODEL: XFF4834R |
CC | STATUS: curated by darrasse (20120410) |
MW | 49716.3 Da |
SQ | 456 aa |
........10........20........30........40........50 |
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XFF4834R_chr13080 cysK-XFF4834R_chr13080 |
1 |
309 |
S=358 I=32 E=1.0986e-36 |
cysteine synthase |
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XFF4834R_chr35240 XFF4834R_chr38460231_4094334_r1_XFF4834R-XFF4834R_chr35240 |
28 |
316 |
S=125 I=23 E=1.77951e-08 |
Putative cysteine synthase |
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NP_643910.1 cysB-XAC3603 |
1 |
456 |
S=2247 I=94 E=0 |
cystathionine beta-synthase |
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YP_365457.1 XCV3726 |
1 |
456 |
S=2233 I=93 E=0 |
cystathionine beta-synthase |
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NP_635989.1 cysB-XCC0597 |
1 |
456 |
S=2204 I=92 E=0 |
cystathionine beta-synthase |
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XALc_2713 XALc_2713 |
1 |
456 |
S=2057 I=85 E=0 |
probable cystathionine beta-synthase protein |
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YP_365190.1 cysK-XCV3459 |
1 |
309 |
S=363 I=32 E=1.08994e-36 |
cysteine synthase |
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NP_643648.1 cysK-XAC3341 |
1 |
309 |
S=362 I=32 E=1.4407e-36 |
cysteine synthase |
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XALc_2522 cysK-XALc_2522 |
1 |
309 |
S=357 I=32 E=5.42152e-36 |
probable cysteine synthase protein |
![]() |
NP_638528.1 cysK-XCC3182 |
1 |
309 |
S=352 I=32 E=2.32524e-35 |
cysteine synthase |
![]() |
XALc_2730 cysK-XALc_2730 |
28 |
321 |
S=149 I=24 E=7.39506e-11 |
probable cysteine synthase protein |
![]() |
YP_365476.1 XCV3745 |
28 |
316 |
S=123 I=23 E=1.08258e-07 |
putative cysteine synthase |
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NP_643935.1 cysM-XAC3628 |
28 |
316 |
S=121 I=23 E=1.89146e-07 |
cysteine synthase |
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NP_635971.1 cysM-XCC0578 |
28 |
318 |
S=118 I=22 E=5.43204e-07 |
cysteine synthase |
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1 |
456 |
S=2203 I=92 E=0 |
Cystathionine beta-lyase EC=4.4.1.8 |
Pubmed 11589581 |
|
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1 |
455 |
S=1232 I=53 E=2.23287e-140 |
Cysteine synthase EC=2.5.1.47 ; Amino-acid biosynthesis Transferase |
Pubmed 16885444 |
|
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1 |
451 |
S=651 I=36 E=6.26311e-70 |
Cystathionine beta-synthase |
Pubmed 12101301 |
|
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102 |
322 |
S=609 I=56 E=6.92492e-65 |
Putative uncharacterized protein ; Pyridoxal phosphate |
||
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1 |
451 |
S=588 I=35 E=2.34315e-62 |
Probable cystathionine beta-synthase |
Pubmed 12375103 |
|
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7 |
433 |
S=593 I=35 E=3.5364e-63 |
Cystathionine beta-synthase EC=4.2.1.22 ; Alternative splicing Amino-acid biosynthesis CBS domain Cysteine Cytoplasm Heme Iron Isopeptide bond |
||
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3 |
456 |
S=582 I=33 E=9.54685e-62 |
Cystathionine beta-synthase EC=4.2.1.22 ; Amino-acid biosynthesis CBS domain Cysteine Cytoplasm Heme Iron Isopeptide bond Lyase Metal-binding Nucleus Phosphoprote |
||
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7 |
433 |
S=577 I=34 E=3.68781e-61 |
Cystathionine beta-synthase EC=4.2.1.22 ; Alternative splicing Amino-acid biosynthesis CBS domain Cysteine Cytoplasm Heme Iron Isopeptide bond Lyase |
||
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3 |
456 |
S=576 I=32 E=4.74873e-61 |
Cystathionine beta-synthase EC=4.2.1.22 ; Amino-acid biosynthesis CBS domain Cysteine Lyase Pyridoxal phosphate Repeat |
||
![]() |
7 |
451 |
S=571 I=33 E=1.85043e-60 |
Cystathionine beta-synthase EC=4.2.1.22 ; Allosteric enzyme Alternative splicing Amino-acid biosynthesis CBS domain Cysteine Cytoplasm Disease mu |
||
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[G3DSA:3.40.50.1100] | 120 |
311 |
- |
![]() |
[PTHR10314:SF8] | 27 |
324 |
- |
![]() |
[PTHR10314] | 27 |
324 |
- |
![]() |
IPR001926 [PF00291] | 9 |
302 |
Pyridoxal phosphate-dependent enzyme, beta subunit |
![]() |
IPR000644 [PF00571] | 343 |
389 |
Cystathionine beta-synthase, core |
![]() |
IPR000644 [SM00116] | 343 |
390 |
Cystathionine beta-synthase, core |
![]() |
IPR001216 [PS00901] | 32 |
50 |
Cysteine synthase/cystathionine beta-synthase P-phosphate-binding site |
![]() |
IPR000644 [PS51371] | 339 |
396 |
Cystathionine beta-synthase, core |
![]() |
[seg] | 69 |
80 |
- |
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[seg] | 271 |
284 |
- |
![]() |
190 |
260 |
S=275 I=75 E=7.74251e-26 |
![]() |
396 |
455 |
S=260 I=83 E=5.22112e-24 |
![]() |
1 |
64 |
S=183 I=54 E=1.13576e-14 |
![]() |
342 |
395 |
S=178 I=63 E=5.13275e-14 |
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99 |
129 |
S=150 I=90 E=1.18241e-10 |
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315 |
341 |
S=139 I=81 E=2.41489e-09 |
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130 |
176 |
S=127 I=55 E=6.63391e-08 |
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310 |
341 |
S=114 I=63 E=2.51618e-06 |
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97 |
131 |
S=113 I=60 E=3.85728e-06 |
![]() |
309 |
398 |
S=106 I=29 E=2.91575e-05 |
![]() |
IPR001926 [SSF53686] | 2 |
323 |
Pyridoxal phosphate-dependent enzyme, beta subunit |
![]() |
[SSF54631] | 330 |
392 |
- |
![]() |
[SSF54631] | 394 |
451 |
- |
Access unfiltered results
Miscellaneous analyses