Xanthomonas fuscans subsp. fuscans

4 hits

  1. XFF4834R_chr27360xylA1XFF4834R_chr27360probable D-xylose isomerase
  2. XFF4834R_chr27370xylB1XFF4834R_chr27370putative D-xylulokinase
  3. XFF4834R_chr41000xylA2XFF4834R_chr41000probable D-xylose isomerase
  4. XFF4834R_chr41180xylB2XFF4834R_chr41180putative D-xylulose kinase

xylA1 XFF4834R_chr27360
XFF4834R_chr27350
XFF4834R_chr27350 		Cluster
DrawMap 		XML file

FASTA file 		Extract
Sequence 		Codon
Usage 		Framed OrthoMCL XFF4834R_chr27370
XFF4834R_chr27370
ID xylA1
AC XFF4834R_chr27360
LT XFF4834R_chr27360
OR XFF4834R_chr from 3155340 to 3156677 on strand -
DE probable D-xylose isomerase
IP Xylose isomerase; Xylose isomerase, bacterial type
CL 1.1.1.19 Xylose catabolism GO:0042843
EC
GO InterPro
Biological Process: carbohydrate metabolic process (GO:0005975)
Molecular Function: xylose isomerase activity (GO:0009045)

Curated
PM
AN
CC COG: [G] Carbohydrate transport and metabolism;
CC MODEL: XFF4834R
CC STATUS: curated by elauber (20100719)
MW 48863.1 Da
SQ 445 aa
  
........10........20........30........40........50
         |         |         |         |         |
MSNTVYIGAKEYFPGIGKIGFEGRDSDNPLAFKVYDANKTIGDKTMAEHL
RFAVAYWHSFCGNGADPFGPGTRAYPWDVGDTALNRAEAKADAAFEFFTK
LGVPYYCFHDIDLSPDADDIGQYESNLKHMVGIAKQRQADTGIKLLWGTA
NLFSHPRYMNGASTNPDFNVVARAAVQVKAAIEATVELGGENYVFWGGRE
GYACLHNTQMKREQDNMARFLTLARDYGRSLGFKGNFLIEPKPMEPMKHQ
YDFDSATVIGFLRQHGLDQDFKLNIEANHATLSGHSFEHDLQVASDAGLL
GSIDANRGNPQNGWDTDQFPTDLYDTVGAMLVVLRQGGLAPGGLNFDAKV
RRESSDPQDLFLAHIGGMDAFARGLEVANALLTASPLEQWRAERYASFDS
GAGADFAAGKTTLADLAKHAAGNVPRQISGRQEAYENLINQYLTR

    





Show or not Domain decomposition
 

    

        
            
                XFF4834R
            
                
        
XFF4834R_chr41000 lcl|xylA-XFF4834R_chr41000

        
1

	
445

	
S=2138 I=90 E=0

	
D-xylose isomerase

     	

   





    

        
            
                X.species
            
                
        
NP_644524.2 lcl|xylA-XAC4225

        
1

	
445

	
S=2122 I=89 E=0

	
xylose isomerase

     	

   





    

        
            
                X.species
            
                
        
NP_642104.2 lcl|xylA-XAC1776

        
1

	
445

	
S=2113 I=89 E=0

	
xylose isomerase

     	

   





    

        
            
                X.species
            
                
        
YP_366061.1 lcl|xylA-XCV4330

        
1

	
445

	
S=2106 I=88 E=0

	
xylose isomerase

     	

   





    

        
            
                X.species
            
                
        
YP_363539.1 lcl|XCV1808

        
1

	
445

	
S=2106 I=88 E=0

	
xylose isomerase

     	

   





    

        
            
                X.species
            
                
        
NP_639439.1 lcl|xylA-XCC4100

        
1

	
445

	
S=2029 I=85 E=0

	
xylose isomerase

     	

   





    

        
            
                X.species
            
                
        
NP_637125.1 lcl|xylA-XCC1758

        
1

	
445

	
S=2014 I=84 E=0

	
xylose isomerase

     	

   





    

        
            
                X.species
            
                
        
 lcl|xylA1-XALc_1196

        
1

	
445

	
S=1922 I=81 E=0

	
probable xylose isomerase  protein

     	

   





    

        
            
                X.species
            
                
        
 lcl|xylA2-XALc_0064

        
1

	
445

	
S=1922 I=81 E=0

	
probable xylose isomerase  protein

     	

   





    

        
                pubmed
        
        

        
9

	
442

	
S=1297 I=55 E=2.79471e-148

	
Xylose isomerase EC=5.3.1.5 ; Carbohydrate metabolism Metal-binding Pentose shunt

	
Pubmed 12811467

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
10

	
442

	
S=1286 I=55 E=6.01431e-147

	
Xylose isomerase EC=5.3.1.5 ; Carbohydrate metabolism Metal-binding Pentose shunt

	
Pubmed 19050860

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
12

	
443

	
S=1091 I=50 E=2.299e-123

	
Xylose kinase

	
Pubmed 8031084,10368143

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
10

	
443

	
S=1080 I=47 E=5.58985e-122

	
Xylose isomerase EC=5.3.1.5 ; Carbohydrate metabolism Cytoplasm Magnesium Metal-binding Pentose shunt

	
Pubmed 1324398

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
12

	
443

	
S=1080 I=47 E=6.20638e-122

	
Xylose isomerase EC=5.3.1.5 ; Carbohydrate metabolism Cytoplasm Magnesium Metal-binding Pentose shunt

	
Pubmed 12066186

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
1

	
445

	
S=2122 I=89 E=0

	
Xylose isomerase 2 EC=5.3.1.5 ; Carbohydrate metabolism Cytoplasm Magnesium Metal-binding Pentose shunt

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
1

	
445

	
S=2106 I=88 E=0

	
Xylose isomerase EC=5.3.1.5 ; Carbohydrate metabolism Cytoplasm Magnesium Metal-binding Pentose shunt

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
1

	
445

	
S=2098 I=88 E=0

	
Xylose isomerase EC=5.3.1.5 ; Carbohydrate metabolism Cytoplasm Magnesium Metal-binding Pentose shunt

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
1

	
445

	
S=2098 I=88 E=0

	
Xylose isomerase 2 EC=5.3.1.5 ; Carbohydrate metabolism Cytoplasm Magnesium Metal-binding Pentose shunt

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
1

	
445

	
S=2098 I=88 E=0

	
Xylose isomerase 1 EC=5.3.1.5 ; Carbohydrate metabolism Cytoplasm Magnesium Metal-binding Pentose shunt

	

    

    

         
        
prodomImg

    





    

        Iprscan
        IPR001998
	[PR00688]
	
100

	
122

	
	
Xylose isomerase

    





    

        Iprscan
        IPR001998
	[PR00688]
	
141

	
161

	
	
Xylose isomerase

    





    

        Iprscan
        IPR001998
	[PR00688]
	
164

	
183

	
	
Xylose isomerase

    





    

        Iprscan
        IPR001998
	[PR00688]
	
188

	
209

	
	
Xylose isomerase

    





    

        Iprscan
        IPR001998
	[PR00688]
	
215

	
234

	
	
Xylose isomerase

    





    

        Iprscan
        IPR001998
	[PR00688]
	
237

	
261

	
	
Xylose isomerase

    





    

        Iprscan
        IPR001998
	[PR00688]
	
279

	
306

	
	
Xylose isomerase

    





    

        Iprscan
        IPR001998
	[PR00688]
	
308

	
319

	
	
Xylose isomerase

    





    

        Iprscan
        IPR001998
	[PR00688]
	
341

	
352

	
	
Xylose isomerase

    





    

        Iprscan
        IPR013022
	[G3DSA:3.20.20.150]
	
10

	
443

	
	
Xylose isomerase-like, TIM barrel domain

    





    

        Iprscan
        IPR001998
	[MF_00455]
	
19

	
443

	
	
Xylose isomerase

    





    

        Iprscan
        IPR012307
	[PF01261]
	
91

	
317

	
	
Xylose isomerase, TIM barrel domain

    





    

        Iprscan
        IPR013452
	[TIGR02630]
	
12

	
443

	
	
Xylose isomerase, bacterial type

    





    

        Iprscan
        IPR001998
	[PS51415]
	
43

	
443

	
	
Xylose isomerase

    





    

        Iprscan
        
	[seg]
	
87

	
98

	
	
-

    





    

        Iprscan
        
	[seg]
	
170

	
184

	
	
-

    





    

        Iprscan
        
	[seg]
	
396

	
409

	
	
-

    





    

        
            
                
            
                
        
PD003353

        
18

	
443

	
S=1146 I=53 E=2.48454e-131

    	
    





    

        Iprscan
        IPR013022
	[SSF51658]
	
10

	
443

	
	
Xylose isomerase-like, TIM barrel domain

    




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ID


DE


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PM



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CL

 
  Your email  
 
  Validation code (copy this one w1X5SwPd)  
 
     



Show or not Access unfiltered results






    

       
            
                pubmed
            
        
	    
            
Set of Uniprot with relevant PubMed cross-references ncbi-blastp

        		
 	    
            40 hits
        
    

    

        
            
                swiss-prot
            
        
	    
            
Swiss-Prot ncbi-blastp

        		
 	    
            195 hits
        
    

    
    
    

        
            
                XFF4834R
            
        
    	
            
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp

        		        
        
            2 hits
        
    

        
    

        
            
                hamap
            
        
	
            
HAMAP scan

        		        
        
            0 hits
        
    

    
    

	    
            
                Interpro Scan
            
            
	        
                
IprScan

            		        
            
                18 hits
            
    








Show or not Miscellaneous analyses




    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetLocalBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBl4w_HP/XFF4834R_chr27360.xml_fasta", "https://iant.toulouse.inra.fr/bacteria/annotation/web/img/XFF4834R.png"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    
    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetNcbiBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBl4w_HP/XFF4834R_chr27360.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetUniprotBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBl4w_HP/XFF4834R_chr27360.xml_fasta"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetKeggBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBl4w_HP/XFF4834R_chr27360.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    

    






xylB1 XFF4834R_chr27370




    

         
             
            XFF4834R_chr27360
            
XFF4834R_chr27360
            
        		


       
           
	   Cluster
	   
DrawMap
	   
        		
	
        
            XML file
        	


	    FASTA file
        		
	
	
             
            Extract
Sequence
            
        		
	
	
             
            Codon
Usage
            
        		
    
    
            
            Framed
            
     
  	



	
            OrthoMCL
            
    
  	
    
    
    

     


	
             
            XFF4834R_chr27380
            
XFF4834R_chr27380
            
        		

    





    

        ID
        xylB1
    

    

        AC
        XFF4834R_chr27370
    

    

        LT
        XFF4834R_chr27370
    

    

        OR
        XFF4834R_chr from 3156725 to 3158218 on strand -
    

   

        DE
        putative D-xylulokinase
  

   

        IP
        
  
  
  
  

        CL
        1.1.1.19 Xylose catabolism	GO:0042843 
    

  

        EC
        
    

    
    

        GO
        
            InterPro



            Curated

        		
    


  

        PM
        
    

  

        AN
        
    

  

        CC
        COG: [G] Carbohydrate transport and metabolism; 
    

    

        CC
        MODEL: XFF4834R 
  
    
  

        CC
        STATUS: curated by elauber (20110110)
  

  
  


    

        MW
        53027.5 Da
    


    

        SQ
        497 aa
    

    

         
        
........10........20........30........40........50
         |         |         |         |         |
MSLYVGLDVGTQSVKLVAYDPQDRAVVATIAAPMELISRDDGTREQQAQW
WIDGIVHCFAQLDGEQRARVRGISVSGQQHGFVPVAADGSVTAPVKLWCD
TSTALECDEIMDAVGGAAGSVAAAGNPIMAGYTASKLPWTRKHRPEAYAA
MTTVMLPHDYINFWLTGERFAEVGDASGTGWLDVRTRQWSERMLSAVDAQ
RDLRDALPPLVDTGAVYALSDAAAQALHLPAGVRVTTGSGDNMMAAIGTG
NVVPGRLTMSLGTSGTLFAYADHPVVDDDARWAAFCSSSGGWLPLICTMN
CTVATEAVMRMFSITRDQTEAMIADTAPGADGLVLLPFFNGERTPDLPAA
RGCLFGMDLHNTTAAHFYRAAMEGATYSLRNGFDAFVAAGLQFDTILLTG
GGSKSAQWRQMVADIFNLQVVVPTQPEGAAFGAALQALWACERADGGDAA
LADVVLEHLQVDDALAAQPNPQRVAQYQQHYQTFLKHLHVVSPLYAG

    






    

        
            
                XFF4834R
            
                
        
XFF4834R_chr41180 lcl|XFF4834R_chr_4781896_4783542_r1_XFF4834R-XFF4834R_chr41180

        
3

	
415

	
S=176 I=26 E=1.22786e-14

	

     	

   





    

        
            
                XFF4834R
            
                
        
XFF4834R_chr03420 lcl|glpK-XFF4834R_chr03420

        
128

	
427

	
S=127 I=24 E=1.17985e-08

	
glycerol kinase

     	

   





    

        
            
                X.species
            
                
        
YP_363538.1 lcl|XCV1807

        
1

	
497

	
S=2377 I=91 E=0

	
putative xylulose kinase

     	

   





    

        
            
                X.species
            
                
        
NP_642103.1 lcl|XAC1775-XAC1775

        
1

	
497

	
S=2365 I=91 E=0

	
D-xylulokinase

     	

   





    

        
            
                X.species
            
                
        
NP_637124.1 lcl|XCC1757

        
1

	
497

	
S=2222 I=87 E=0

	
D-xylulokinase

     	

   





    

        
            
                X.species
            
                
        
 lcl|xylB-XALc_1195

        
1

	
497

	
S=1794 I=69 E=0

	
probable xylulose kinase protein

     	

   





    

        
            
                X.species
            
                
        
YP_366081.1 lcl|xylB4-XCV4350

        
3

	
415

	
S=184 I=26 E=5.1057e-15

	
xylulose kinase

     	

   





    

        
            
                X.species
            
                
        
NP_644543.2 lcl|xylB-XAC4244

        
3

	
415

	
S=173 I=26 E=1.03371e-13

	
xylulose kinase

     	

   





    

        
            
                X.species
            
                
        
 lcl|glpK-XALc_0443

        
128

	
427

	
S=132 I=24 E=1.07527e-08

	
probable glycerol kinase protein

     	

   





    

        
            
                X.species
            
                
        
NP_640714.1 lcl|glpK-XAC0358

        
128

	
427

	
S=131 I=25 E=1.55079e-08

	
glycerol kinase

     	

   





    

        
            
                X.species
            
                
        
NP_635753.1 lcl|glpK-XCC0358

        
60

	
427

	
S=127 I=23 E=4.81723e-08

	
glycerol kinase

     	

   





    

        
            
                X.species
            
                
        
YP_362103.1 lcl|glpK-XCV0372

        
128

	
427

	
S=126 I=24 E=5.93846e-08

	
glycerol kinase

     	

   





    

        
                pubmed
        
        

        
1

	
496

	
S=1080 I=41 E=7.08586e-122

	
D-xylulokinase EC=2.7.1.17 ; Transferase

	
Pubmed 12811467

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
2

	
427

	
S=977 I=47 E=1.6923e-109

	
Xylulose kinase ; Transferase

	
Pubmed 9116029,9461423

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
4

	
420

	
S=593 I=33 E=5.51957e-63

	
Xylulose kinase ; Transferase

	
Pubmed 1368665,9495747

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
3

	
427

	
S=545 I=36 E=4.1549e-57

	
Xylulose kinase EC=2.7.1.17 ; ATP-binding Carbohydrate metabolism Nucleotide-binding Transferase Xylose

	
Pubmed 1657868

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
3

	
421

	
S=541 I=32 E=1.396e-56

	
Xylulose kinase ; Transferase

	
Pubmed 16151815

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
3

	
488

	
S=910 I=37 E=1.738e-101

	
Xylulose kinase EC=2.7.1.17 ; ATP-binding Carbohydrate metabolism Nucleotide-binding Transferase Xylose

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
3

	
427

	
S=578 I=36 E=2.83618e-61

	
Xylulose kinase EC=2.7.1.17 ; ATP-binding Carbohydrate metabolism Nucleotide-binding Transferase Xylose

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
3

	
427

	
S=545 I=36 E=2.82672e-57

	
Xylulose kinase EC=2.7.1.17 ; ATP-binding Carbohydrate metabolism Nucleotide-binding Transferase Xylose

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
1

	
421

	
S=514 I=32 E=1.66971e-53

	
Xylulose kinase EC=2.7.1.17 ; ATP-binding Carbohydrate metabolism Nucleotide-binding Transferase Xylose

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
3

	
420

	
S=472 I=32 E=1.86231e-48

	
Xylulose kinase EC=2.7.1.17 ; ATP-binding Carbohydrate metabolism Nucleotide-binding Transferase Xylose

	

    

    

         
        
prodomImg

    





    

        
            
                
            
                
        
PD001007

        
317

	
385

	
S=164 I=46 E=2.90563e-12

    	
    





    

        
            
                
            
                
        
PD024458

        
136

	
194

	
S=156 I=48 E=2.8037e-11

    	
    





    

        
            
                
            
                
        
PDA1R628

        
283

	
308

	
S=140 I=100 E=2.33072e-09

    	
    





    

        
            
                
            
                
        
PD869475

        
328

	
418

	
S=115 I=33 E=2.62671e-06

    	
    





    

        
            
                
            
                
        
PD191435

        
219

	
287

	
S=109 I=46 E=1.38879e-05

    	
    





    

        
            
                
            
                
        
PDA772Q0

        
196

	
217

	
S=105 I=95 E=3.40914e-05

    	
    





    

        
            
                
            
                
        
PDA321L2

        
196

	
218

	
S=102 I=87 E=8.08182e-05

    	
    




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Show or not Access unfiltered results






    

       
            
                pubmed
            
        
	    
            
Set of Uniprot with relevant PubMed cross-references ncbi-blastp

        		
 	    
            57 hits
        
    

    

        
            
                swiss-prot
            
        
	    
            
Swiss-Prot ncbi-blastp

        		
 	    
            156 hits
        
    

    
    
    

        
            
                XFF4834R
            
        
    	
            
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp

        		        
        
            3 hits
        
    

        
    

        
            
                hamap
            
        
	
            
HAMAP scan

        		        
        
            0 hits
        
    

    
    

	    
            
                Interpro Scan
            
            
	        
                
IprScan

            		        
            
                0 hits
            
    








Show or not Miscellaneous analyses




    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetLocalBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBl4w_HP/XFF4834R_chr27370.xml_fasta", "https://iant.toulouse.inra.fr/bacteria/annotation/web/img/XFF4834R.png"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    
    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetNcbiBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBl4w_HP/XFF4834R_chr27370.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetUniprotBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBl4w_HP/XFF4834R_chr27370.xml_fasta"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetKeggBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBl4w_HP/XFF4834R_chr27370.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    

    






xylA2 XFF4834R_chr41000




    

         
             
            XFF4834R_chr_4380
            
XFF4834R_chr_4380
            
        		


       
           
	   Cluster
	   
DrawMap
	   
        		
	
        
            XML file
        	


	    FASTA file
        		
	
	
             
            Extract
Sequence
            
        		
	
	
             
            Codon
Usage
            
        		
    
    
            
            Framed
            
     
  	



	
            OrthoMCL
            
    
  	
    
    
    

     


	
             
            XFF4834R_chr41010
            
XFF4834R_chr41010
            
        		

    





    

        ID
        xylA2
    

    

        AC
        XFF4834R_chr41000
    

    

        LT
        XFF4834R_chr41000
    

    

        OR
        XFF4834R_chr from 4757765 to 4759102 on strand +
    

   

        DE
        probable D-xylose isomerase
  

   

        IP
        Xylose isomerase; Xylose isomerase, bacterial type
  
  
  
  

        CL
        1.1.1.19 Xylose catabolism	GO:0042843 
    

  

        EC
        
    

    
    

        GO
        
            InterPro
Biological Process: carbohydrate metabolic process (GO:0005975)
Molecular Function: xylose isomerase activity (GO:0009045)


            Curated

        		
    


  

        PM
        
    

  

        AN
        
    

  

        CC
        COG: [G] Carbohydrate transport and metabolism; 
    

    

        CC
        MODEL: XFF4834R 
  
    
  

        CC
        STATUS: curated by elauber (20100719)
  

  
  


    

        MW
        48807 Da
    


    

        SQ
        445 aa
    

    

         
        
........10........20........30........40........50
         |         |         |         |         |
MSNTVYIGAKEYFPGIGQIGFEGRDSDNPLAFKVYDANKTIGDKTMAEHL
RFAVAYWHSFCGNGADPFGPGTRAYPWDVGDTALNRAEAKADAAFEFFTK
LGVPYYCFHDIDLSPDADDIGQYESNLKHMVGIAKQRQADTGIKLLWGTA
NLFSHPRYMNGASTNPDFNVVARAAVQVKAAIEATVELGGENYVFWGGRE
GYACLHNTQMKREQDNMARFLTLARDYGRSLGFKGNFLIEPKPMEPMKHQ
YDFDSATVIGFLRQHGLDQDFKLNIEANHATLSGHSFEHDLQVASDAGLL
GSIDANRGNPQNGWDTDQFPTDLYDTVGAMLVVLRQGGLAPGGLNFDAKV
RRESSDPQDLFLAHIGGMDAFARGLEVANALLTASPLEQWRAERYASFDS
GAGADFAAGKTTLADLAKHAAGNAPQQISGRQEAYENLINQYLTR

    





Show or not Domain decomposition
 

    

        
            
                XFF4834R
            
                
        
XFF4834R_chr27360 lcl|xylA-XFF4834R_chr27360

        
1

	
445

	
S=2138 I=90 E=0

	
D-xylose isomerase

     	

   





    

        
            
                X.species
            
                
        
NP_644524.2 lcl|xylA-XAC4225

        
1

	
445

	
S=2126 I=89 E=0

	
xylose isomerase

     	

   





    

        
            
                X.species
            
                
        
NP_642104.2 lcl|xylA-XAC1776

        
1

	
445

	
S=2117 I=89 E=0

	
xylose isomerase

     	

   





    

        
            
                X.species
            
                
        
YP_366061.1 lcl|xylA-XCV4330

        
1

	
445

	
S=2111 I=89 E=0

	
xylose isomerase

     	

   





    

        
            
                X.species
            
                
        
YP_363539.1 lcl|XCV1808

        
1

	
445

	
S=2111 I=89 E=0

	
xylose isomerase

     	

   





    

        
            
                X.species
            
                
        
NP_639439.1 lcl|xylA-XCC4100

        
1

	
445

	
S=2027 I=85 E=0

	
xylose isomerase

     	

   





    

        
            
                X.species
            
                
        
NP_637125.1 lcl|xylA-XCC1758

        
1

	
445

	
S=2013 I=84 E=0

	
xylose isomerase

     	

   





    

        
            
                X.species
            
                
        
 lcl|xylA1-XALc_1196

        
1

	
445

	
S=1920 I=80 E=0

	
probable xylose isomerase  protein

     	

   





    

        
            
                X.species
            
                
        
 lcl|xylA2-XALc_0064

        
1

	
445

	
S=1920 I=80 E=0

	
probable xylose isomerase  protein

     	

   





    

        
                pubmed
        
        

        
9

	
442

	
S=1295 I=55 E=5.01224e-148

	
Xylose isomerase EC=5.3.1.5 ; Carbohydrate metabolism Metal-binding Pentose shunt

	
Pubmed 12811467

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
10

	
442

	
S=1283 I=55 E=1.30673e-146

	
Xylose isomerase EC=5.3.1.5 ; Carbohydrate metabolism Metal-binding Pentose shunt

	
Pubmed 19050860

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
10

	
443

	
S=1087 I=47 E=7.07943e-123

	
Xylose isomerase EC=5.3.1.5 ; Carbohydrate metabolism Cytoplasm Magnesium Metal-binding Pentose shunt

	
Pubmed 1324398

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
12

	
443

	
S=1080 I=50 E=5.2589e-122

	
Xylose kinase

	
Pubmed 8031084,10368143

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
12

	
443

	
S=1080 I=47 E=5.83892e-122

	
Xylose isomerase EC=5.3.1.5 ; Carbohydrate metabolism Cytoplasm Magnesium Metal-binding Pentose shunt

	
Pubmed 6320721,6327696

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
1

	
445

	
S=2126 I=89 E=0

	
Xylose isomerase 2 EC=5.3.1.5 ; Carbohydrate metabolism Cytoplasm Magnesium Metal-binding Pentose shunt

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
1

	
445

	
S=2111 I=89 E=0

	
Xylose isomerase EC=5.3.1.5 ; Carbohydrate metabolism Cytoplasm Magnesium Metal-binding Pentose shunt

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
1

	
445

	
S=2100 I=88 E=0

	
Xylose isomerase EC=5.3.1.5 ; Carbohydrate metabolism Cytoplasm Magnesium Metal-binding Pentose shunt

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
1

	
445

	
S=2100 I=88 E=0

	
Xylose isomerase 2 EC=5.3.1.5 ; Carbohydrate metabolism Cytoplasm Magnesium Metal-binding Pentose shunt

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
1

	
445

	
S=2100 I=88 E=0

	
Xylose isomerase 1 EC=5.3.1.5 ; Carbohydrate metabolism Cytoplasm Magnesium Metal-binding Pentose shunt

	

    

    

         
        
prodomImg

    





    

        Iprscan
        IPR001998
	[PR00688]
	
100

	
122

	
	
Xylose isomerase

    





    

        Iprscan
        IPR001998
	[PR00688]
	
141

	
161

	
	
Xylose isomerase

    





    

        Iprscan
        IPR001998
	[PR00688]
	
164

	
183

	
	
Xylose isomerase

    





    

        Iprscan
        IPR001998
	[PR00688]
	
188

	
209

	
	
Xylose isomerase

    





    

        Iprscan
        IPR001998
	[PR00688]
	
215

	
234

	
	
Xylose isomerase

    





    

        Iprscan
        IPR001998
	[PR00688]
	
237

	
261

	
	
Xylose isomerase

    





    

        Iprscan
        IPR001998
	[PR00688]
	
279

	
306

	
	
Xylose isomerase

    





    

        Iprscan
        IPR001998
	[PR00688]
	
308

	
319

	
	
Xylose isomerase

    





    

        Iprscan
        IPR001998
	[PR00688]
	
341

	
352

	
	
Xylose isomerase

    





    

        Iprscan
        IPR013022
	[G3DSA:3.20.20.150]
	
10

	
443

	
	
Xylose isomerase-like, TIM barrel domain

    





    

        Iprscan
        IPR001998
	[MF_00455]
	
19

	
443

	
	
Xylose isomerase

    





    

        Iprscan
        IPR012307
	[PF01261]
	
91

	
317

	
	
Xylose isomerase, TIM barrel domain

    





    

        Iprscan
        IPR013452
	[TIGR02630]
	
12

	
443

	
	
Xylose isomerase, bacterial type

    





    

        Iprscan
        IPR001998
	[PS51415]
	
43

	
443

	
	
Xylose isomerase

    





    

        Iprscan
        
	[seg]
	
87

	
98

	
	
-

    





    

        Iprscan
        
	[seg]
	
170

	
184

	
	
-

    





    

        Iprscan
        
	[seg]
	
396

	
409

	
	
-

    





    

        
            
                
            
                
        
PD003353

        
18

	
444

	
S=1147 I=52 E=1.89612e-131

    	
    





    

        Iprscan
        IPR013022
	[SSF51658]
	
10

	
443

	
	
Xylose isomerase-like, TIM barrel domain

    




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                pubmed
            
        
	    
            
Set of Uniprot with relevant PubMed cross-references ncbi-blastp

        		
 	    
            40 hits
        
    

    

        
            
                swiss-prot
            
        
	    
            
Swiss-Prot ncbi-blastp

        		
 	    
            195 hits
        
    

    
    
    

        
            
                XFF4834R
            
        
    	
            
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp

        		        
        
            2 hits
        
    

        
    

        
            
                hamap
            
        
	
            
HAMAP scan

        		        
        
            0 hits
        
    

    
    

	    
            
                Interpro Scan
            
            
	        
                
IprScan

            		        
            
                18 hits
            
    








Show or not Miscellaneous analyses




    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetLocalBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBl4w_HP/XFF4834R_chr41000.xml_fasta", "https://iant.toulouse.inra.fr/bacteria/annotation/web/img/XFF4834R.png"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    
    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetNcbiBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBl4w_HP/XFF4834R_chr41000.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetUniprotBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBl4w_HP/XFF4834R_chr41000.xml_fasta"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetKeggBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBl4w_HP/XFF4834R_chr41000.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    

    






xylB2 XFF4834R_chr41180




    

         
             
            XFF4834R_chr41170
            
XFF4834R_chr41170
            
        		


       
           
	   Cluster
	   
DrawMap
	   
        		
	
        
            XML file
        	


	    FASTA file
        		
	
	
             
            Extract
Sequence
            
        		
	
	
             
            Codon
Usage
            
        		
    
    
            
            Framed
            
     
  	



	
            OrthoMCL
            
    
  	
    
    
    

     


	
             
            XFF4834R_chr41190
            
XFF4834R_chr41190
            
        		

    





    

        ID
        xylB2
    

    

        AC
        XFF4834R_chr41180
    

    

        LT
        XFF4834R_chr41180
    

    

        OR
        XFF4834R_chr from 4781896 to 4783542 on strand -
    

   

        DE
        putative D-xylulose kinase
  

   

        IP
        
  
  
  
  

        CL
        1.1.1.19 Xylose catabolism	GO:0042843 
    

  

        EC
        
    

    
    

        GO
        
            InterPro



            Curated

        		
    


  

        PM
        
    

  

        AN
        
    

  

        CC
        COG: [G] Carbohydrate transport and metabolism; 
    

    

        CC
        MODEL: XFF4834R 
  
    
  

        CC
        STATUS: curated by elauber (20100716)
  

  
  


    

        MW
        59512.7 Da
    


    

        SQ
        548 aa
    

    

         
        
........10........20........30........40........50
         |         |         |         |         |
MRTQTLADDTGGNAPLVLAVDLGTSGCKCALVTLDGKVLAWAFEPVQLHV
QGVAAEQDPHAWWDAFCATAAAVVQGDAALRRRVVAVCCSTQGEGTVCVD
HNGQALGRAMLWLDMRGQAAIARRLQGRWLNVRGYDPLRLWRWLRLSGGA
PARSGKDCAGHIAYLRDHQPVRYERTHKFLNVLDYMNLRLTGRFCATPDS
MLTTWVTDNRDPHHIRYDAGLLDMVGVERDKLPDLLPSTAVLGPLLPQVA
EALGLSPQTVVVAGAIDTSAVAVAAAVEDHAAHLYLGTSSWLGAHVPRMK
TDVRSTIAAVPCAVEGRYLAIALQTTAGANLSFLRDRILFHADELLSDEQ
RPDVYEVLNRIAARVPAGSNGLIYMPWLFGERTPVEDPSLRAGLINLSLM
HSREDMIRAVMEGVAFNTRWMMEPFARLLGCDPGTIAAVGGGAQSDLWCQ
IIADVSGRPIRQLHNPIQANAVGAAFIAGVGLGRLGFGDLAALQRPRRVY
EPDAGTRALYDDRYAVFKDLQRTLAPIYRRLNPSTPAPAQEVAAHVCP

    






    

        
            
                XFF4834R
            
                
        
XFF4834R_chr27370 lcl|xylB-XFF4834R_chr27370

        
159

	
528

	
S=162 I=27 E=8.06817e-13

	
xylulokinase

     	

   





    

        
            
                XFF4834R
            
                
        
XFF4834R_chr03420 lcl|glpK-XFF4834R_chr03420

        
367

	
524

	
S=107 I=26 E=3.78963e-06

	
glycerol kinase

     	

   





    

        
            
                X.species
            
                
        
YP_366081.1 lcl|xylB4-XCV4350

        
1

	
548

	
S=2563 I=90 E=0

	
xylulose kinase

     	

   





    

        
            
                X.species
            
                
        
NP_644543.2 lcl|xylB-XAC4244

        
1

	
548

	
S=2559 I=91 E=0

	
xylulose kinase

     	

   





    

        
            
                X.species
            
                
        
 lcl|xylB-XALc_1195

        
81

	
480

	
S=179 I=29 E=2.17521e-14

	
probable xylulose kinase protein

     	

   





    

        
            
                X.species
            
                
        
NP_642103.1 lcl|XAC1775-XAC1775

        
159

	
528

	
S=162 I=27 E=2.87041e-12

	
D-xylulokinase

     	

   





    

        
            
                X.species
            
                
        
YP_363538.1 lcl|XCV1807

        
159

	
528

	
S=161 I=27 E=3.47733e-12

	
putative xylulose kinase

     	

   





    

        
            
                X.species
            
                
        
NP_637124.1 lcl|XCC1757

        
80

	
478

	
S=159 I=25 E=5.97049e-12

	
D-xylulokinase

     	

   





    

        
            
                X.species
            
                
        
NP_635753.1 lcl|glpK-XCC0358

        
367

	
503

	
S=115 I=27 E=1.39725e-06

	
glycerol kinase

     	

   





    

        
            
                X.species
            
                
        
YP_362103.1 lcl|glpK-XCV0372

        
367

	
502

	
S=112 I=27 E=3.17107e-06

	
glycerol kinase

     	

   





    

        
            
                X.species
            
                
        
 lcl|glpK-XALc_0443

        
367

	
483

	
S=112 I=27 E=3.2551e-06

	
probable glycerol kinase protein

     	

   





    

        
            
                X.species
            
                
        
NP_640714.1 lcl|glpK-XAC0358

        
367

	
510

	
S=108 I=27 E=1.01999e-05

	
glycerol kinase

     	

   





    

        
                pubmed
        
        

        
18

	
531

	
S=389 I=27 E=3.40624e-38

	
Xylulose kinase ; Transferase

	
Pubmed 1368665,9495747

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
17

	
536

	
S=360 I=27 E=1.09289e-34

	
Xylose isomerase ; Kinase Transferase

	
Pubmed 8031084,10368143

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
17

	
520

	
S=355 I=26 E=5.38901e-34

	
Xylulose kinase EC=2.7.1.17 ; ATP-binding Carbohydrate metabolism Nucleotide-binding Transferase Xylose

	
Pubmed 2994009

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
14

	
527

	
S=344 I=25 E=1.01756e-32

	
Xylulose kinase EC=2.7.1.17 ; ATP-binding Carbohydrate metabolism Nucleotide-binding Transferase Xylose

	
Pubmed 1660563

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
17

	
531

	
S=310 I=23 E=1.43738e-28

	
D-xylulose kinase EF0083 ; Transferase

	
Pubmed 12066186

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
17

	
520

	
S=355 I=26 E=3.66816e-34

	
Xylulose kinase EC=2.7.1.17 ; ATP-binding Carbohydrate metabolism Nucleotide-binding Transferase Xylose

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
16

	
522

	
S=345 I=26 E=5.2859e-33

	
D-xylulose kinase EC=2.7.1.- ; ATP-binding Carbohydrate metabolism Nucleotide-binding Transferase Xylose

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
14

	
527

	
S=344 I=25 E=6.92629e-33

	
Xylulose kinase EC=2.7.1.17 ; ATP-binding Carbohydrate metabolism Nucleotide-binding Transferase Xylose

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
16

	
522

	
S=343 I=26 E=1.07109e-32

	
D-xylulose kinase EC=2.7.1.- ; ATP-binding Carbohydrate metabolism Nucleotide-binding Transferase Xylose

	

    

    

         
        
prodomImg

    





    

        
                sp
        
        

        
17

	
531

	
S=308 I=24 E=1.78558e-28

	
Xylulose kinase EC=2.7.1.17 ; ATP-binding Carbohydrate metabolism Nucleotide-binding Transferase Xylose

	

    

    

         
        
prodomImg

    





    

        
            
                
            
                
        
PD986736

        
303

	
352

	
S=254 I=100 E=3.30601e-23

    	
    





    

        
            
                
            
                
        
PD659906

        
424

	
467

	
S=210 I=89 E=5.75211e-18

    	
    





    

        
            
                
            
                
        
PDA256J7

        
420

	
532

	
S=203 I=40 E=5.13145e-17

    	
    





    

        
            
                
            
                
        
PDA3A7G1

        
82

	
246

	
S=188 I=35 E=2.88141e-15

    	
    





    

        
            
                
            
                
        
PD001007

        
355

	
423

	
S=163 I=49 E=3.54318e-12

    	
    





    

        
            
                
            
                
        
PD869475

        
331

	
462

	
S=115 I=30 E=2.40221e-06

    	
    





    

        
            
                
            
                
        
PD298402

        
405

	
461

	
S=113 I=37 E=3.34579e-06

    	
    





    

        
            
                
            
                
        
PD708303

        
124

	
161

	
S=112 I=61 E=4.23383e-06

    	
    





    

        
            
                
            
                
        
PD557873

        
405

	
486

	
S=107 I=28 E=1.86397e-05

    	
    





    

        
            
                
            
                
        
PD986756

        
433

	
524

	
S=106 I=34 E=2.44243e-05

    	
    




Show or not Suggestions
Suggest an annotation


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                pubmed
            
        
	    
            
Set of Uniprot with relevant PubMed cross-references ncbi-blastp

        		
 	    
            46 hits
        
    

    

        
            
                swiss-prot
            
        
	    
            
Swiss-Prot ncbi-blastp

        		
 	    
            360 hits
        
    

    
    
    

        
            
                XFF4834R
            
        
    	
            
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp

        		        
        
            3 hits
        
    

        
    

        
            
                hamap
            
        
	
            
HAMAP scan

        		        
        
            0 hits
        
    

    
    

	    
            
                Interpro Scan
            
            
	        
                
IprScan

            		        
            
                0 hits
            
    








Show or not Miscellaneous analyses




    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetLocalBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBl4w_HP/XFF4834R_chr41180.xml_fasta", "https://iant.toulouse.inra.fr/bacteria/annotation/web/img/XFF4834R.png"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    
    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetNcbiBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBl4w_HP/XFF4834R_chr41180.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetUniprotBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBl4w_HP/XFF4834R_chr41180.xml_fasta"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetKeggBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBl4w_HP/XFF4834R_chr41180.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    •