Xanthomonas fuscans subsp. fuscans

4 hits

  1. XFF4834R_chr27360xylA1XFF4834R_chr27360probable D-xylose isomerase
  2. XFF4834R_chr27370xylB1XFF4834R_chr27370putative D-xylulokinase
  3. XFF4834R_chr41000xylA2XFF4834R_chr41000probable D-xylose isomerase
  4. XFF4834R_chr41180xylB2XFF4834R_chr41180putative D-xylulose kinase

xylA1 XFF4834R_chr27360
XFF4834R_chr27350
XFF4834R_chr27350 		Cluster
DrawMap 		XML file

FASTA file 		Extract
Sequence 		Codon
Usage 		Framed OrthoMCL XFF4834R_chr27370
XFF4834R_chr27370
ID xylA1
AC XFF4834R_chr27360
LT XFF4834R_chr27360
OR XFF4834R_chr from 3155340 to 3156677 on strand -
DE probable D-xylose isomerase
IP Xylose isomerase; Xylose isomerase, bacterial type
CL 1.1.1.19 Xylose catabolism GO:0042843
EC
GO InterPro
Biological Process: carbohydrate metabolic process (GO:0005975)
Molecular Function: xylose isomerase activity (GO:0009045)

Curated
PM
AN
CC COG: [G] Carbohydrate transport and metabolism;
CC MODEL: XFF4834R
CC STATUS: curated by elauber (20100719)
MW 48863.1 Da
SQ 445 aa
  
........10........20........30........40........50
         |         |         |         |         |
MSNTVYIGAKEYFPGIGKIGFEGRDSDNPLAFKVYDANKTIGDKTMAEHL
RFAVAYWHSFCGNGADPFGPGTRAYPWDVGDTALNRAEAKADAAFEFFTK
LGVPYYCFHDIDLSPDADDIGQYESNLKHMVGIAKQRQADTGIKLLWGTA
NLFSHPRYMNGASTNPDFNVVARAAVQVKAAIEATVELGGENYVFWGGRE
GYACLHNTQMKREQDNMARFLTLARDYGRSLGFKGNFLIEPKPMEPMKHQ
YDFDSATVIGFLRQHGLDQDFKLNIEANHATLSGHSFEHDLQVASDAGLL
GSIDANRGNPQNGWDTDQFPTDLYDTVGAMLVVLRQGGLAPGGLNFDAKV
RRESSDPQDLFLAHIGGMDAFARGLEVANALLTASPLEQWRAERYASFDS
GAGADFAAGKTTLADLAKHAAGNVPRQISGRQEAYENLINQYLTR

    





Show or not Domain decomposition
 

    

        
            
                XFF4834R
            
                
        
XFF4834R_chr41000 lcl|xylA-XFF4834R_chr41000

        
1

	
445

	
S=2138 I=90 E=0

	
D-xylose isomerase

     	

   





    

        
            
                XFF4834R
            
                
        
NP_644524.2 lcl|xylA-XAC4225

        
1

	
445

	
S=2122 I=89 E=0

	
xylose isomerase

     	

   





    

        
            
                XFF4834R
            
                
        
NP_642104.2 lcl|xylA-XAC1776

        
1

	
445

	
S=2113 I=89 E=0

	
xylose isomerase

     	

   





    

        
            
                XFF4834R
            
                
        
YP_366061.1 lcl|xylA-XCV4330

        
1

	
445

	
S=2106 I=88 E=0

	
xylose isomerase

     	

   





    

        
            
                XFF4834R
            
                
        
YP_363539.1 lcl|XCV1808

        
1

	
445

	
S=2106 I=88 E=0

	
xylose isomerase

     	

   





    

        
            
                XFF4834R
            
                
        
NP_639439.1 lcl|xylA-XCC4100

        
1

	
445

	
S=2029 I=85 E=0

	
xylose isomerase

     	

   





    

        
            
                XFF4834R
            
                
        
NP_637125.1 lcl|xylA-XCC1758

        
1

	
445

	
S=2014 I=84 E=0

	
xylose isomerase

     	

   





    

        
            
                XFF4834R
            
                
        
 lcl|xylA1-XALc_1196

        
1

	
445

	
S=1922 I=81 E=0

	
probable xylose isomerase  protein

     	

   





    

        
            
                XFF4834R
            
                
        
 lcl|xylA2-XALc_0064

        
1

	
445

	
S=1922 I=81 E=0

	
probable xylose isomerase  protein

     	

   





    

        
                pubmed
        
        

        
9

	
442

	
S=1297 I=55 E=2.79471e-148

	
Xylose isomerase EC=5.3.1.5 ; Carbohydrate metabolism Metal-binding Pentose shunt

	
Pubmed 12811467

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
10

	
442

	
S=1286 I=55 E=6.01431e-147

	
Xylose isomerase EC=5.3.1.5 ; Carbohydrate metabolism Metal-binding Pentose shunt

	
Pubmed 19050860

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
12

	
443

	
S=1091 I=50 E=2.299e-123

	
Xylose kinase

	
Pubmed 8031084,10368143

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
10

	
443

	
S=1080 I=47 E=5.58985e-122

	
Xylose isomerase EC=5.3.1.5 ; Carbohydrate metabolism Cytoplasm Magnesium Metal-binding Pentose shunt

	
Pubmed 1324398

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
12

	
443

	
S=1080 I=47 E=6.20638e-122

	
Xylose isomerase EC=5.3.1.5 ; Carbohydrate metabolism Cytoplasm Magnesium Metal-binding Pentose shunt

	
Pubmed 12066186

    

    

         
        
prodomImg

    





    

        
            
                sp_Pdown
            
        
        
sp|Q8PEW5|XYLA2_XANAC

        
1

	
445

	
S=2122 I=89 E=0

	
Xylose isomerase 2 EC=5.3.1.5 ; Carbohydrate metabolism Cytoplasm Magnesium Metal-binding Pentose shunt

    





    

        
            
                sp_Pdown
            
        
        
sp|Q3BMF2|XYLA_XANC5

        
1

	
445

	
S=2106 I=88 E=0

	
Xylose isomerase EC=5.3.1.5 ; Carbohydrate metabolism Cytoplasm Magnesium Metal-binding Pentose shunt

    





    

        
            
                sp_Pdown
            
        
        
sp|Q2NXR2|XYLA_XANOM

        
1

	
445

	
S=2098 I=88 E=0

	
Xylose isomerase EC=5.3.1.5 ; Carbohydrate metabolism Cytoplasm Magnesium Metal-binding Pentose shunt

    





    

        
            
                sp_Pdown
            
        
        
sp|Q5GUF2|XYLA2_XANOR

        
1

	
445

	
S=2098 I=88 E=0

	
Xylose isomerase 2 EC=5.3.1.5 ; Carbohydrate metabolism Cytoplasm Magnesium Metal-binding Pentose shunt

    





    

        
            
                sp_Pdown
            
        
        
sp|Q5GYQ7|XYLA1_XANOR

        
1

	
445

	
S=2098 I=88 E=0

	
Xylose isomerase 1 EC=5.3.1.5 ; Carbohydrate metabolism Cytoplasm Magnesium Metal-binding Pentose shunt

    





    

        Iprscan
        IPR001998
	[PR00688]
	
100

	
122

	
	
Xylose isomerase

    





    

        Iprscan
        IPR001998
	[PR00688]
	
141

	
161

	
	
Xylose isomerase

    





    

        Iprscan
        IPR001998
	[PR00688]
	
164

	
183

	
	
Xylose isomerase

    





    

        Iprscan
        IPR001998
	[PR00688]
	
188

	
209

	
	
Xylose isomerase

    





    

        Iprscan
        IPR001998
	[PR00688]
	
215

	
234

	
	
Xylose isomerase

    





    

        Iprscan
        IPR001998
	[PR00688]
	
237

	
261

	
	
Xylose isomerase

    





    

        Iprscan
        IPR001998
	[PR00688]
	
279

	
306

	
	
Xylose isomerase

    





    

        Iprscan
        IPR001998
	[PR00688]
	
308

	
319

	
	
Xylose isomerase

    





    

        Iprscan
        IPR001998
	[PR00688]
	
341

	
352

	
	
Xylose isomerase

    





    

        Iprscan
        IPR013022
	[G3DSA:3.20.20.150]
	
10

	
443

	
	
Xylose isomerase-like, TIM barrel domain

    





    

        Iprscan
        IPR001998
	[MF_00455]
	
19

	
443

	
	
Xylose isomerase

    





    

        Iprscan
        IPR012307
	[PF01261]
	
91

	
317

	
	
Xylose isomerase, TIM barrel domain

    





    

        Iprscan
        IPR013452
	[TIGR02630]
	
12

	
443

	
	
Xylose isomerase, bacterial type

    





    

        Iprscan
        IPR001998
	[PS51415]
	
43

	
443

	
	
Xylose isomerase

    





    

        Iprscan
        
	[seg]
	
87

	
98

	
	
-

    





    

        Iprscan
        
	[seg]
	
170

	
184

	
	
-

    





    

        Iprscan
        
	[seg]
	
396

	
409

	
	
-

    





    

        
            
                
            
                
        
PD003353

        
18

	
443

	
S=1146 I=53 E=2.48454e-131

    	
    





    

        Iprscan
        IPR013022
	[SSF51658]
	
10

	
443

	
	
Xylose isomerase-like, TIM barrel domain

    




Show or not Suggestions
Suggest an annotation


Move your mouse over each field to get more informations


ID


DE


EC


GO


PM



CC


CL

 
  Your email  
 
  Validation code (copy this one BG4WZMwS)  
 
     



Show or not Access unfiltered results






    

       
            
                pubmed
            
        
	    
            
Set of Uniprot with relevant PubMed cross-references ncbi-blastp

        		
 	    
            40 hits
        
    

    

        
            
                swiss-prot
            
        
	    
            
Swiss-Prot ncbi-blastp

        		
 	    
            195 hits
        
    

    
    
    

        
            
                XFF4834R
            
        
    	
            
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp

        		        
        
            2 hits
        
    

        
    

        
            
                hamap
            
        
	
            
HAMAP scan

        		        
        
            0 hits
        
    

    
    

	    
            
                Interpro Scan
            
            
	        
                
IprScan

            		        
            
                18 hits
            
    








Show or not Miscellaneous analyses




    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetLocalBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBk6lRw7/XFF4834R_chr27360.xml_fasta", "https://iant.toulouse.inra.fr/bacteria/annotation/web/img/XFF4834R.png"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    
    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetNcbiBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBk6lRw7/XFF4834R_chr27360.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetUniprotBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBk6lRw7/XFF4834R_chr27360.xml_fasta"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetKeggBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBk6lRw7/XFF4834R_chr27360.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    

    






xylB1 XFF4834R_chr27370




    

         
             
            XFF4834R_chr27360
            
XFF4834R_chr27360
            
        		


       
           
	   Cluster
	   
DrawMap
	   
        		
	
        
            XML file
        	


	    FASTA file
        		
	
	
             
            Extract
Sequence
            
        		
	
	
             
            Codon
Usage
            
        		
    
    
            
            Framed
            
     
  	



	
            OrthoMCL
            
    
  	
    
    
    

     


	
             
            XFF4834R_chr27380
            
XFF4834R_chr27380
            
        		

    





    

        ID
        xylB1
    

    

        AC
        XFF4834R_chr27370
    

    

        LT
        XFF4834R_chr27370
    

    

        OR
        XFF4834R_chr from 3156725 to 3158218 on strand -
    

   

        DE
        putative D-xylulokinase
  

   

        IP
        
  
  
  
  

        CL
        1.1.1.19 Xylose catabolism	GO:0042843 
    

  

        EC
        
    

    
    

        GO
        
            InterPro



            Curated

        		
    


  

        PM
        
    

  

        AN
        
    

  

        CC
        COG: [G] Carbohydrate transport and metabolism; 
    

    

        CC
        MODEL: XFF4834R 
  
    
  

        CC
        STATUS: curated by elauber (20110110)
  

  
  


    

        MW
        53027.5 Da
    


    

        SQ
        497 aa
    

    

         
        
........10........20........30........40........50
         |         |         |         |         |
MSLYVGLDVGTQSVKLVAYDPQDRAVVATIAAPMELISRDDGTREQQAQW
WIDGIVHCFAQLDGEQRARVRGISVSGQQHGFVPVAADGSVTAPVKLWCD
TSTALECDEIMDAVGGAAGSVAAAGNPIMAGYTASKLPWTRKHRPEAYAA
MTTVMLPHDYINFWLTGERFAEVGDASGTGWLDVRTRQWSERMLSAVDAQ
RDLRDALPPLVDTGAVYALSDAAAQALHLPAGVRVTTGSGDNMMAAIGTG
NVVPGRLTMSLGTSGTLFAYADHPVVDDDARWAAFCSSSGGWLPLICTMN
CTVATEAVMRMFSITRDQTEAMIADTAPGADGLVLLPFFNGERTPDLPAA
RGCLFGMDLHNTTAAHFYRAAMEGATYSLRNGFDAFVAAGLQFDTILLTG
GGSKSAQWRQMVADIFNLQVVVPTQPEGAAFGAALQALWACERADGGDAA
LADVVLEHLQVDDALAAQPNPQRVAQYQQHYQTFLKHLHVVSPLYAG

    






    

        
            
                XFF4834R
            
                
        
XFF4834R_chr41180 lcl|XFF4834R_chr_4781896_4783542_r1_XFF4834R-XFF4834R_chr41180

        
3

	
415

	
S=176 I=26 E=1.22786e-14

	

     	

   





    

        
            
                XFF4834R
            
                
        
XFF4834R_chr03420 lcl|glpK-XFF4834R_chr03420

        
128

	
427

	
S=127 I=24 E=1.17985e-08

	
glycerol kinase

     	

   





    

        
            
                XFF4834R
            
                
        
YP_363538.1 lcl|XCV1807

        
1

	
497

	
S=2377 I=91 E=0

	
putative xylulose kinase

     	

   





    

        
            
                XFF4834R
            
                
        
NP_642103.1 lcl|XAC1775-XAC1775

        
1

	
497

	
S=2365 I=91 E=0

	
D-xylulokinase

     	

   





    

        
            
                XFF4834R
            
                
        
NP_637124.1 lcl|XCC1757

        
1

	
497

	
S=2222 I=87 E=0

	
D-xylulokinase

     	

   





    

        
            
                XFF4834R
            
                
        
 lcl|xylB-XALc_1195

        
1

	
497

	
S=1794 I=69 E=0

	
probable xylulose kinase protein

     	

   





    

        
            
                XFF4834R
            
                
        
YP_366081.1 lcl|xylB4-XCV4350

        
3

	
415

	
S=184 I=26 E=5.1057e-15

	
xylulose kinase

     	

   





    

        
            
                XFF4834R
            
                
        
NP_644543.2 lcl|xylB-XAC4244

        
3

	
415

	
S=173 I=26 E=1.03371e-13

	
xylulose kinase

     	

   





    

        
            
                XFF4834R
            
                
        
 lcl|glpK-XALc_0443

        
128

	
427

	
S=132 I=24 E=1.07527e-08

	
probable glycerol kinase protein

     	

   





    

        
            
                XFF4834R
            
                
        
NP_640714.1 lcl|glpK-XAC0358

        
128

	
427

	
S=131 I=25 E=1.55079e-08

	
glycerol kinase

     	

   





    

        
            
                XFF4834R
            
                
        
NP_635753.1 lcl|glpK-XCC0358

        
60

	
427

	
S=127 I=23 E=4.81723e-08

	
glycerol kinase

     	

   





    

        
            
                XFF4834R
            
                
        
YP_362103.1 lcl|glpK-XCV0372

        
128

	
427

	
S=126 I=24 E=5.93846e-08

	
glycerol kinase

     	

   





    

        
                pubmed
        
        

        
1

	
496

	
S=1080 I=41 E=7.08586e-122

	
D-xylulokinase EC=2.7.1.17 ; Transferase

	
Pubmed 12811467

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
2

	
427

	
S=977 I=47 E=1.6923e-109

	
Xylulose kinase ; Transferase

	
Pubmed 9116029,9461423

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
4

	
420

	
S=593 I=33 E=5.51957e-63

	
Xylulose kinase ; Transferase

	
Pubmed 1368665,9495747

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
3

	
427

	
S=545 I=36 E=4.1549e-57

	
Xylulose kinase EC=2.7.1.17 ; ATP-binding Carbohydrate metabolism Nucleotide-binding Transferase Xylose

	
Pubmed 1657868

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
3

	
421

	
S=541 I=32 E=1.396e-56

	
Xylulose kinase ; Transferase

	
Pubmed 16151815

    

    

         
        
prodomImg

    





    

        
            
                sp_Pdown
            
        
        
sp|P44401|XYLB_HAEIN

        
3

	
488

	
S=910 I=37 E=1.738e-101

	
Xylulose kinase EC=2.7.1.17 ; ATP-binding Carbohydrate metabolism Nucleotide-binding Transferase Xylose

    





    

        
            
                sp_Pdown
            
        
        
sp|Q9RK00|XYLB_STRCO

        
3

	
427

	
S=578 I=36 E=2.83618e-61

	
Xylulose kinase EC=2.7.1.17 ; ATP-binding Carbohydrate metabolism Nucleotide-binding Transferase Xylose

    





    

        
            
                sp_Pdown
            
        
        
sp|P27156|XYLB_STRRU

        
3

	
427

	
S=545 I=36 E=2.82672e-57

	
Xylulose kinase EC=2.7.1.17 ; ATP-binding Carbohydrate metabolism Nucleotide-binding Transferase Xylose

    





    

        
            
                sp_Pdown
            
        
        
sp|P39211|XYLB_BACSU

        
1

	
421

	
S=514 I=32 E=1.66971e-53

	
Xylulose kinase EC=2.7.1.17 ; ATP-binding Carbohydrate metabolism Nucleotide-binding Transferase Xylose

    





    

        
            
                sp_Pdown
            
        
        
sp|P29444|XYLB_KLEPN

        
3

	
420

	
S=472 I=32 E=1.86231e-48

	
Xylulose kinase EC=2.7.1.17 ; ATP-binding Carbohydrate metabolism Nucleotide-binding Transferase Xylose

    





    

        
            
                
            
                
        
PD001007

        
317

	
385

	
S=164 I=46 E=2.90563e-12

    	
    





    

        
            
                
            
                
        
PD024458

        
136

	
194

	
S=156 I=48 E=2.8037e-11

    	
    





    

        
            
                
            
                
        
PDA1R628

        
283

	
308

	
S=140 I=100 E=2.33072e-09

    	
    





    

        
            
                
            
                
        
PD869475

        
328

	
418

	
S=115 I=33 E=2.62671e-06

    	
    





    

        
            
                
            
                
        
PD191435

        
219

	
287

	
S=109 I=46 E=1.38879e-05

    	
    





    

        
            
                
            
                
        
PDA772Q0

        
196

	
217

	
S=105 I=95 E=3.40914e-05

    	
    





    

        
            
                
            
                
        
PDA321L2

        
196

	
218

	
S=102 I=87 E=8.08182e-05

    	
    




Show or not Suggestions
Suggest an annotation


Move your mouse over each field to get more informations


ID


DE


EC


GO


PM



CC


CL

 
  Your email  
 
  Validation code (copy this one Qfm6fjHV)  
 
     



Show or not Access unfiltered results






    

       
            
                pubmed
            
        
	    
            
Set of Uniprot with relevant PubMed cross-references ncbi-blastp

        		
 	    
            57 hits
        
    

    

        
            
                swiss-prot
            
        
	    
            
Swiss-Prot ncbi-blastp

        		
 	    
            156 hits
        
    

    
    
    

        
            
                XFF4834R
            
        
    	
            
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp

        		        
        
            3 hits
        
    

        
    

        
            
                hamap
            
        
	
            
HAMAP scan

        		        
        
            0 hits
        
    

    
    

	    
            
                Interpro Scan
            
            
	        
                
IprScan

            		        
            
                0 hits
            
    








Show or not Miscellaneous analyses




    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetLocalBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBk6lRw7/XFF4834R_chr27370.xml_fasta", "https://iant.toulouse.inra.fr/bacteria/annotation/web/img/XFF4834R.png"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    
    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetNcbiBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBk6lRw7/XFF4834R_chr27370.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetUniprotBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBk6lRw7/XFF4834R_chr27370.xml_fasta"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetKeggBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBk6lRw7/XFF4834R_chr27370.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    

    






xylA2 XFF4834R_chr41000




    

         
             
            XFF4834R_chr_4380
            
XFF4834R_chr_4380
            
        		


       
           
	   Cluster
	   
DrawMap
	   
        		
	
        
            XML file
        	


	    FASTA file
        		
	
	
             
            Extract
Sequence
            
        		
	
	
             
            Codon
Usage
            
        		
    
    
            
            Framed
            
     
  	



	
            OrthoMCL
            
    
  	
    
    
    

     


	
             
            XFF4834R_chr41010
            
XFF4834R_chr41010
            
        		

    





    

        ID
        xylA2
    

    

        AC
        XFF4834R_chr41000
    

    

        LT
        XFF4834R_chr41000
    

    

        OR
        XFF4834R_chr from 4757765 to 4759102 on strand +
    

   

        DE
        probable D-xylose isomerase
  

   

        IP
        Xylose isomerase; Xylose isomerase, bacterial type
  
  
  
  

        CL
        1.1.1.19 Xylose catabolism	GO:0042843 
    

  

        EC
        
    

    
    

        GO
        
            InterPro
Biological Process: carbohydrate metabolic process (GO:0005975)
Molecular Function: xylose isomerase activity (GO:0009045)


            Curated

        		
    


  

        PM
        
    

  

        AN
        
    

  

        CC
        COG: [G] Carbohydrate transport and metabolism; 
    

    

        CC
        MODEL: XFF4834R 
  
    
  

        CC
        STATUS: curated by elauber (20100719)
  

  
  


    

        MW
        48807 Da
    


    

        SQ
        445 aa
    

    

         
        
........10........20........30........40........50
         |         |         |         |         |
MSNTVYIGAKEYFPGIGQIGFEGRDSDNPLAFKVYDANKTIGDKTMAEHL
RFAVAYWHSFCGNGADPFGPGTRAYPWDVGDTALNRAEAKADAAFEFFTK
LGVPYYCFHDIDLSPDADDIGQYESNLKHMVGIAKQRQADTGIKLLWGTA
NLFSHPRYMNGASTNPDFNVVARAAVQVKAAIEATVELGGENYVFWGGRE
GYACLHNTQMKREQDNMARFLTLARDYGRSLGFKGNFLIEPKPMEPMKHQ
YDFDSATVIGFLRQHGLDQDFKLNIEANHATLSGHSFEHDLQVASDAGLL
GSIDANRGNPQNGWDTDQFPTDLYDTVGAMLVVLRQGGLAPGGLNFDAKV
RRESSDPQDLFLAHIGGMDAFARGLEVANALLTASPLEQWRAERYASFDS
GAGADFAAGKTTLADLAKHAAGNAPQQISGRQEAYENLINQYLTR

    





Show or not Domain decomposition
 

    

        
            
                XFF4834R
            
                
        
XFF4834R_chr27360 lcl|xylA-XFF4834R_chr27360

        
1

	
445

	
S=2138 I=90 E=0

	
D-xylose isomerase

     	

   





    

        
            
                XFF4834R
            
                
        
NP_644524.2 lcl|xylA-XAC4225

        
1

	
445

	
S=2126 I=89 E=0

	
xylose isomerase

     	

   





    

        
            
                XFF4834R
            
                
        
NP_642104.2 lcl|xylA-XAC1776

        
1

	
445

	
S=2117 I=89 E=0

	
xylose isomerase

     	

   





    

        
            
                XFF4834R
            
                
        
YP_366061.1 lcl|xylA-XCV4330

        
1

	
445

	
S=2111 I=89 E=0

	
xylose isomerase

     	

   





    

        
            
                XFF4834R
            
                
        
YP_363539.1 lcl|XCV1808

        
1

	
445

	
S=2111 I=89 E=0

	
xylose isomerase

     	

   





    

        
            
                XFF4834R
            
                
        
NP_639439.1 lcl|xylA-XCC4100

        
1

	
445

	
S=2027 I=85 E=0

	
xylose isomerase

     	

   





    

        
            
                XFF4834R
            
                
        
NP_637125.1 lcl|xylA-XCC1758

        
1

	
445

	
S=2013 I=84 E=0

	
xylose isomerase

     	

   





    

        
            
                XFF4834R
            
                
        
 lcl|xylA1-XALc_1196

        
1

	
445

	
S=1920 I=80 E=0

	
probable xylose isomerase  protein

     	

   





    

        
            
                XFF4834R
            
                
        
 lcl|xylA2-XALc_0064

        
1

	
445

	
S=1920 I=80 E=0

	
probable xylose isomerase  protein

     	

   





    

        
                pubmed
        
        

        
9

	
442

	
S=1295 I=55 E=5.01224e-148

	
Xylose isomerase EC=5.3.1.5 ; Carbohydrate metabolism Metal-binding Pentose shunt

	
Pubmed 12811467

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
10

	
442

	
S=1283 I=55 E=1.30673e-146

	
Xylose isomerase EC=5.3.1.5 ; Carbohydrate metabolism Metal-binding Pentose shunt

	
Pubmed 19050860

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
10

	
443

	
S=1087 I=47 E=7.07943e-123

	
Xylose isomerase EC=5.3.1.5 ; Carbohydrate metabolism Cytoplasm Magnesium Metal-binding Pentose shunt

	
Pubmed 1324398

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
12

	
443

	
S=1080 I=50 E=5.2589e-122

	
Xylose kinase

	
Pubmed 8031084,10368143

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
12

	
443

	
S=1080 I=47 E=5.83892e-122

	
Xylose isomerase EC=5.3.1.5 ; Carbohydrate metabolism Cytoplasm Magnesium Metal-binding Pentose shunt

	
Pubmed 6320721,6327696

    

    

         
        
prodomImg

    





    

        
            
                sp_Pdown
            
        
        
sp|Q8PEW5|XYLA2_XANAC

        
1

	
445

	
S=2126 I=89 E=0

	
Xylose isomerase 2 EC=5.3.1.5 ; Carbohydrate metabolism Cytoplasm Magnesium Metal-binding Pentose shunt

    





    

        
            
                sp_Pdown
            
        
        
sp|Q3BMF2|XYLA_XANC5

        
1

	
445

	
S=2111 I=89 E=0

	
Xylose isomerase EC=5.3.1.5 ; Carbohydrate metabolism Cytoplasm Magnesium Metal-binding Pentose shunt

    





    

        
            
                sp_Pdown
            
        
        
sp|Q2NXR2|XYLA_XANOM

        
1

	
445

	
S=2100 I=88 E=0

	
Xylose isomerase EC=5.3.1.5 ; Carbohydrate metabolism Cytoplasm Magnesium Metal-binding Pentose shunt

    





    

        
            
                sp_Pdown
            
        
        
sp|Q5GUF2|XYLA2_XANOR

        
1

	
445

	
S=2100 I=88 E=0

	
Xylose isomerase 2 EC=5.3.1.5 ; Carbohydrate metabolism Cytoplasm Magnesium Metal-binding Pentose shunt

    





    

        
            
                sp_Pdown
            
        
        
sp|Q5GYQ7|XYLA1_XANOR

        
1

	
445

	
S=2100 I=88 E=0

	
Xylose isomerase 1 EC=5.3.1.5 ; Carbohydrate metabolism Cytoplasm Magnesium Metal-binding Pentose shunt

    





    

        Iprscan
        IPR001998
	[PR00688]
	
100

	
122

	
	
Xylose isomerase

    





    

        Iprscan
        IPR001998
	[PR00688]
	
141

	
161

	
	
Xylose isomerase

    





    

        Iprscan
        IPR001998
	[PR00688]
	
164

	
183

	
	
Xylose isomerase

    





    

        Iprscan
        IPR001998
	[PR00688]
	
188

	
209

	
	
Xylose isomerase

    





    

        Iprscan
        IPR001998
	[PR00688]
	
215

	
234

	
	
Xylose isomerase

    





    

        Iprscan
        IPR001998
	[PR00688]
	
237

	
261

	
	
Xylose isomerase

    





    

        Iprscan
        IPR001998
	[PR00688]
	
279

	
306

	
	
Xylose isomerase

    





    

        Iprscan
        IPR001998
	[PR00688]
	
308

	
319

	
	
Xylose isomerase

    





    

        Iprscan
        IPR001998
	[PR00688]
	
341

	
352

	
	
Xylose isomerase

    





    

        Iprscan
        IPR013022
	[G3DSA:3.20.20.150]
	
10

	
443

	
	
Xylose isomerase-like, TIM barrel domain

    





    

        Iprscan
        IPR001998
	[MF_00455]
	
19

	
443

	
	
Xylose isomerase

    





    

        Iprscan
        IPR012307
	[PF01261]
	
91

	
317

	
	
Xylose isomerase, TIM barrel domain

    





    

        Iprscan
        IPR013452
	[TIGR02630]
	
12

	
443

	
	
Xylose isomerase, bacterial type

    





    

        Iprscan
        IPR001998
	[PS51415]
	
43

	
443

	
	
Xylose isomerase

    





    

        Iprscan
        
	[seg]
	
87

	
98

	
	
-

    





    

        Iprscan
        
	[seg]
	
170

	
184

	
	
-

    





    

        Iprscan
        
	[seg]
	
396

	
409

	
	
-

    





    

        
            
                
            
                
        
PD003353

        
18

	
444

	
S=1147 I=52 E=1.89612e-131

    	
    





    

        Iprscan
        IPR013022
	[SSF51658]
	
10

	
443

	
	
Xylose isomerase-like, TIM barrel domain

    




Show or not Suggestions
Suggest an annotation


Move your mouse over each field to get more informations


ID


DE


EC


GO


PM



CC


CL

 
  Your email  
 
  Validation code (copy this one jQDU3A2e)  
 
     



Show or not Access unfiltered results






    

       
            
                pubmed
            
        
	    
            
Set of Uniprot with relevant PubMed cross-references ncbi-blastp

        		
 	    
            40 hits
        
    

    

        
            
                swiss-prot
            
        
	    
            
Swiss-Prot ncbi-blastp

        		
 	    
            195 hits
        
    

    
    
    

        
            
                XFF4834R
            
        
    	
            
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp

        		        
        
            2 hits
        
    

        
    

        
            
                hamap
            
        
	
            
HAMAP scan

        		        
        
            0 hits
        
    

    
    

	    
            
                Interpro Scan
            
            
	        
                
IprScan

            		        
            
                18 hits
            
    








Show or not Miscellaneous analyses




    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetLocalBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBk6lRw7/XFF4834R_chr41000.xml_fasta", "https://iant.toulouse.inra.fr/bacteria/annotation/web/img/XFF4834R.png"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    
    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetNcbiBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBk6lRw7/XFF4834R_chr41000.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetUniprotBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBk6lRw7/XFF4834R_chr41000.xml_fasta"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetKeggBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBk6lRw7/XFF4834R_chr41000.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    

    






xylB2 XFF4834R_chr41180




    

         
             
            XFF4834R_chr41170
            
XFF4834R_chr41170
            
        		


       
           
	   Cluster
	   
DrawMap
	   
        		
	
        
            XML file
        	


	    FASTA file
        		
	
	
             
            Extract
Sequence
            
        		
	
	
             
            Codon
Usage
            
        		
    
    
            
            Framed
            
     
  	



	
            OrthoMCL
            
    
  	
    
    
    

     


	
             
            XFF4834R_chr41190
            
XFF4834R_chr41190
            
        		

    





    

        ID
        xylB2
    

    

        AC
        XFF4834R_chr41180
    

    

        LT
        XFF4834R_chr41180
    

    

        OR
        XFF4834R_chr from 4781896 to 4783542 on strand -
    

   

        DE
        putative D-xylulose kinase
  

   

        IP
        
  
  
  
  

        CL
        1.1.1.19 Xylose catabolism	GO:0042843 
    

  

        EC
        
    

    
    

        GO
        
            InterPro



            Curated

        		
    


  

        PM
        
    

  

        AN
        
    

  

        CC
        COG: [G] Carbohydrate transport and metabolism; 
    

    

        CC
        MODEL: XFF4834R 
  
    
  

        CC
        STATUS: curated by elauber (20100716)
  

  
  


    

        MW
        59512.7 Da
    


    

        SQ
        548 aa
    

    

         
        
........10........20........30........40........50
         |         |         |         |         |
MRTQTLADDTGGNAPLVLAVDLGTSGCKCALVTLDGKVLAWAFEPVQLHV
QGVAAEQDPHAWWDAFCATAAAVVQGDAALRRRVVAVCCSTQGEGTVCVD
HNGQALGRAMLWLDMRGQAAIARRLQGRWLNVRGYDPLRLWRWLRLSGGA
PARSGKDCAGHIAYLRDHQPVRYERTHKFLNVLDYMNLRLTGRFCATPDS
MLTTWVTDNRDPHHIRYDAGLLDMVGVERDKLPDLLPSTAVLGPLLPQVA
EALGLSPQTVVVAGAIDTSAVAVAAAVEDHAAHLYLGTSSWLGAHVPRMK
TDVRSTIAAVPCAVEGRYLAIALQTTAGANLSFLRDRILFHADELLSDEQ
RPDVYEVLNRIAARVPAGSNGLIYMPWLFGERTPVEDPSLRAGLINLSLM
HSREDMIRAVMEGVAFNTRWMMEPFARLLGCDPGTIAAVGGGAQSDLWCQ
IIADVSGRPIRQLHNPIQANAVGAAFIAGVGLGRLGFGDLAALQRPRRVY
EPDAGTRALYDDRYAVFKDLQRTLAPIYRRLNPSTPAPAQEVAAHVCP

    






    

        
            
                XFF4834R
            
                
        
XFF4834R_chr27370 lcl|xylB-XFF4834R_chr27370

        
159

	
528

	
S=162 I=27 E=8.06817e-13

	
xylulokinase

     	

   





    

        
            
                XFF4834R
            
                
        
XFF4834R_chr03420 lcl|glpK-XFF4834R_chr03420

        
367

	
524

	
S=107 I=26 E=3.78963e-06

	
glycerol kinase

     	

   





    

        
            
                XFF4834R
            
                
        
YP_366081.1 lcl|xylB4-XCV4350

        
1

	
548

	
S=2563 I=90 E=0

	
xylulose kinase

     	

   





    

        
            
                XFF4834R
            
                
        
NP_644543.2 lcl|xylB-XAC4244

        
1

	
548

	
S=2559 I=91 E=0

	
xylulose kinase

     	

   





    

        
            
                XFF4834R
            
                
        
 lcl|xylB-XALc_1195

        
81

	
480

	
S=179 I=29 E=2.17521e-14

	
probable xylulose kinase protein

     	

   





    

        
            
                XFF4834R
            
                
        
NP_642103.1 lcl|XAC1775-XAC1775

        
159

	
528

	
S=162 I=27 E=2.87041e-12

	
D-xylulokinase

     	

   





    

        
            
                XFF4834R
            
                
        
YP_363538.1 lcl|XCV1807

        
159

	
528

	
S=161 I=27 E=3.47733e-12

	
putative xylulose kinase

     	

   





    

        
            
                XFF4834R
            
                
        
NP_637124.1 lcl|XCC1757

        
80

	
478

	
S=159 I=25 E=5.97049e-12

	
D-xylulokinase

     	

   





    

        
            
                XFF4834R
            
                
        
NP_635753.1 lcl|glpK-XCC0358

        
367

	
503

	
S=115 I=27 E=1.39725e-06

	
glycerol kinase

     	

   





    

        
            
                XFF4834R
            
                
        
YP_362103.1 lcl|glpK-XCV0372

        
367

	
502

	
S=112 I=27 E=3.17107e-06

	
glycerol kinase

     	

   





    

        
            
                XFF4834R
            
                
        
 lcl|glpK-XALc_0443

        
367

	
483

	
S=112 I=27 E=3.2551e-06

	
probable glycerol kinase protein

     	

   





    

        
            
                XFF4834R
            
                
        
NP_640714.1 lcl|glpK-XAC0358

        
367

	
510

	
S=108 I=27 E=1.01999e-05

	
glycerol kinase

     	

   





    

        
                pubmed
        
        

        
18

	
531

	
S=389 I=27 E=3.40624e-38

	
Xylulose kinase ; Transferase

	
Pubmed 1368665,9495747

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
17

	
536

	
S=360 I=27 E=1.09289e-34

	
Xylose isomerase ; Kinase Transferase

	
Pubmed 8031084,10368143

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
17

	
520

	
S=355 I=26 E=5.38901e-34

	
Xylulose kinase EC=2.7.1.17 ; ATP-binding Carbohydrate metabolism Nucleotide-binding Transferase Xylose

	
Pubmed 2994009

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
14

	
527

	
S=344 I=25 E=1.01756e-32

	
Xylulose kinase EC=2.7.1.17 ; ATP-binding Carbohydrate metabolism Nucleotide-binding Transferase Xylose

	
Pubmed 1660563

    

    

         
        
prodomImg

    





    

        
                pubmed
        
        

        
17

	
531

	
S=310 I=23 E=1.43738e-28

	
D-xylulose kinase EF0083 ; Transferase

	
Pubmed 12066186

    

    

         
        
prodomImg

    





    

        
            
                sp_Pdown
            
        
        
sp|P39211|XYLB_BACSU

        
17

	
520

	
S=355 I=26 E=3.66816e-34

	
Xylulose kinase EC=2.7.1.17 ; ATP-binding Carbohydrate metabolism Nucleotide-binding Transferase Xylose

    





    

        
            
                sp_Pdown
            
        
        
sp|Q5HL88|XYLB_STAEQ

        
16

	
522

	
S=345 I=26 E=5.2859e-33

	
D-xylulose kinase EC=2.7.1.- ; ATP-binding Carbohydrate metabolism Nucleotide-binding Transferase Xylose

    





    

        
            
                sp_Pdown
            
        
        
sp|P21939|XYLB_LACPE

        
14

	
527

	
S=344 I=25 E=6.92629e-33

	
Xylulose kinase EC=2.7.1.17 ; ATP-binding Carbohydrate metabolism Nucleotide-binding Transferase Xylose

    





    

        
            
                sp_Pdown
            
        
        
sp|Q8CR47|XYLB_STAES

        
16

	
522

	
S=343 I=26 E=1.07109e-32

	
D-xylulose kinase EC=2.7.1.- ; ATP-binding Carbohydrate metabolism Nucleotide-binding Transferase Xylose

    





    

        
            
                sp_Pdown
            
        
        
sp|P35850|XYLB_LACBR

        
17

	
531

	
S=308 I=24 E=1.78558e-28

	
Xylulose kinase EC=2.7.1.17 ; ATP-binding Carbohydrate metabolism Nucleotide-binding Transferase Xylose

    





    

        
            
                
            
                
        
PD986736

        
303

	
352

	
S=254 I=100 E=3.30601e-23

    	
    





    

        
            
                
            
                
        
PD659906

        
424

	
467

	
S=210 I=89 E=5.75211e-18

    	
    





    

        
            
                
            
                
        
PDA256J7

        
420

	
532

	
S=203 I=40 E=5.13145e-17

    	
    





    

        
            
                
            
                
        
PDA3A7G1

        
82

	
246

	
S=188 I=35 E=2.88141e-15

    	
    





    

        
            
                
            
                
        
PD001007

        
355

	
423

	
S=163 I=49 E=3.54318e-12

    	
    





    

        
            
                
            
                
        
PD869475

        
331

	
462

	
S=115 I=30 E=2.40221e-06

    	
    





    

        
            
                
            
                
        
PD298402

        
405

	
461

	
S=113 I=37 E=3.34579e-06

    	
    





    

        
            
                
            
                
        
PD708303

        
124

	
161

	
S=112 I=61 E=4.23383e-06

    	
    





    

        
            
                
            
                
        
PD557873

        
405

	
486

	
S=107 I=28 E=1.86397e-05

    	
    





    

        
            
                
            
                
        
PD986756

        
433

	
524

	
S=106 I=34 E=2.44243e-05

    	
    




Show or not Suggestions
Suggest an annotation


Move your mouse over each field to get more informations


ID


DE


EC


GO


PM



CC


CL

 
  Your email  
 
  Validation code (copy this one DoVWP4K3)  
 
     



Show or not Access unfiltered results






    

       
            
                pubmed
            
        
	    
            
Set of Uniprot with relevant PubMed cross-references ncbi-blastp

        		
 	    
            46 hits
        
    

    

        
            
                swiss-prot
            
        
	    
            
Swiss-Prot ncbi-blastp

        		
 	    
            360 hits
        
    

    
    
    

        
            
                XFF4834R
            
        
    	
            
Xanthomonas fuscans subsp. fuscans proteome ncbi-blastp

        		        
        
            3 hits
        
    

        
    

        
            
                hamap
            
        
	
            
HAMAP scan

        		        
        
            0 hits
        
    

    
    

	    
            
                Interpro Scan
            
            
	        
                
IprScan

            		        
            
                0 hits
            
    








Show or not Miscellaneous analyses




    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetLocalBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBk6lRw7/XFF4834R_chr41180.xml_fasta", "https://iant.toulouse.inra.fr/bacteria/annotation/web/img/XFF4834R.png"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    
    
    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetNcbiBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBk6lRw7/XFF4834R_chr41180.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetUniprotBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBk6lRw7/XFF4834R_chr41180.xml_fasta"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    • 
    

    
    
        
  • ERROR Tag PERLLIB Portal/Tools.pl GetKeggBlastButton\("/www/bacteria/annotation//site//www/bacteria/annotation//site/tmp/WBk6lRw7/XFF4834R_chr41180.xml_fasta", "blastp"\) - ERROR: No such file or directory at /www/bacteria/annotation/cgi/XFF4834R/../../lib/iANT/Entry/Display.pm line 164.

    •