FrameDP: sensitive peptide detection on noisy matured sequences

Upload a multifasta file

Warning: this web instance of FrameDP is configured to accept a maximum of 50 sequences.
To analyse more sequences, download the package and install the cli version.

Select or deselect optional actions (CTRL-click for multiple selection)



Click on the image to have access to the analyses performed on the test dataset

Enter your email address to perform an automatic functionnal annotation of the predicted peptides

Peptide prediction parameters

  • Minimum length of the predicted peptides:
  • e-value cut-off for considering ncbi-blastx hits
  • reference protein database is set to uniprot_sprot.fasta-norep

    Self-training process parameters

  • Enter the method used for the first classification: (GC or GC3)
  • Enter the maximum number of models:
  • Enter the maximum number of iterations: (1 means that the models will be based on GC% or GC3% only)
  • Cut-offs for considering ncbi-blastx HSPs : evalue <= ; length >=